Multiple sequence alignment - TraesCS5D01G109200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G109200 chr5D 100.000 6071 0 0 1 6071 123444999 123451069 0.000000e+00 11212.0
1 TraesCS5D01G109200 chr5D 94.976 836 34 5 2 831 36488007 36487174 0.000000e+00 1304.0
2 TraesCS5D01G109200 chr5D 91.513 271 21 2 5221 5490 486284795 486285064 7.430000e-99 372.0
3 TraesCS5D01G109200 chr5A 97.233 4373 81 16 892 5244 136388583 136392935 0.000000e+00 7369.0
4 TraesCS5D01G109200 chr5A 92.973 185 10 3 5840 6022 136393410 136393593 3.610000e-67 267.0
5 TraesCS5D01G109200 chr5A 95.588 68 2 1 5491 5557 136392933 136393000 2.310000e-19 108.0
6 TraesCS5D01G109200 chr5B 96.851 1842 47 3 1892 3723 136405297 136407137 0.000000e+00 3070.0
7 TraesCS5D01G109200 chr5B 93.829 1426 63 17 3761 5172 136407135 136408549 0.000000e+00 2122.0
8 TraesCS5D01G109200 chr5B 91.119 563 24 11 886 1430 136403793 136404347 0.000000e+00 739.0
9 TraesCS5D01G109200 chr5B 92.838 377 20 4 1504 1873 136404808 136405184 1.930000e-149 540.0
10 TraesCS5D01G109200 chr6B 94.781 843 41 2 1 842 140089432 140088592 0.000000e+00 1310.0
11 TraesCS5D01G109200 chr6B 94.378 836 44 2 1 835 712562706 712563539 0.000000e+00 1280.0
12 TraesCS5D01G109200 chr6B 91.667 60 4 1 5833 5892 21781545 21781603 1.400000e-11 82.4
13 TraesCS5D01G109200 chr6B 93.878 49 3 0 5929 5977 4421422 4421470 2.350000e-09 75.0
14 TraesCS5D01G109200 chr2D 94.643 840 39 3 2 837 621667931 621668768 0.000000e+00 1297.0
15 TraesCS5D01G109200 chr2D 95.200 250 10 2 5243 5491 541547536 541547288 1.590000e-105 394.0
16 TraesCS5D01G109200 chr3B 94.524 840 42 3 1 839 537418291 537419127 0.000000e+00 1293.0
17 TraesCS5D01G109200 chr2A 95.326 813 35 2 1 810 592830608 592831420 0.000000e+00 1288.0
18 TraesCS5D01G109200 chr2A 91.379 116 9 1 5833 5948 747258875 747258989 2.270000e-34 158.0
19 TraesCS5D01G109200 chr2A 90.141 71 5 2 5840 5910 208581946 208581878 2.330000e-14 91.6
20 TraesCS5D01G109200 chr4D 94.411 841 39 4 3 837 498607501 498606663 0.000000e+00 1286.0
21 TraesCS5D01G109200 chr4D 94.187 843 43 3 1 839 15242359 15241519 0.000000e+00 1280.0
22 TraesCS5D01G109200 chr4D 94.466 253 12 2 5239 5490 101017613 101017864 7.380000e-104 388.0
23 TraesCS5D01G109200 chr4D 94.094 254 12 3 5248 5499 115044521 115044269 3.430000e-102 383.0
24 TraesCS5D01G109200 chr2B 94.153 838 46 2 1 837 690962645 690961810 0.000000e+00 1273.0
25 TraesCS5D01G109200 chr4A 94.488 254 12 2 5242 5494 615435280 615435028 2.050000e-104 390.0
26 TraesCS5D01G109200 chr4A 93.156 263 14 4 5240 5499 643110907 643111168 3.430000e-102 383.0
27 TraesCS5D01G109200 chr4A 85.915 284 36 3 5548 5830 101515950 101515670 3.560000e-77 300.0
28 TraesCS5D01G109200 chr4A 90.000 120 12 0 5547 5666 591501599 591501480 8.150000e-34 156.0
29 TraesCS5D01G109200 chr4A 87.500 120 15 0 5547 5666 593110665 593110784 8.210000e-29 139.0
30 TraesCS5D01G109200 chr3A 93.725 255 14 2 5246 5499 300127485 300127738 1.230000e-101 381.0
31 TraesCS5D01G109200 chr3A 93.725 255 14 2 5246 5499 309063558 309063811 1.230000e-101 381.0
32 TraesCS5D01G109200 chr3A 92.537 268 14 6 5237 5501 493129672 493129936 4.440000e-101 379.0
33 TraesCS5D01G109200 chr7D 86.054 294 41 0 5547 5840 418075872 418075579 3.530000e-82 316.0
34 TraesCS5D01G109200 chr7D 90.303 165 12 4 5833 5997 418627312 418627152 4.770000e-51 213.0
35 TraesCS5D01G109200 chr7D 88.485 165 15 4 5833 5997 417938404 417938244 4.800000e-46 196.0
36 TraesCS5D01G109200 chr4B 86.301 292 38 1 5549 5840 20300732 20300443 3.530000e-82 316.0
37 TraesCS5D01G109200 chr7B 90.840 131 11 1 5842 5972 44259328 44259457 2.250000e-39 174.0
38 TraesCS5D01G109200 chr7B 90.244 123 10 2 5833 5955 433881691 433881571 6.300000e-35 159.0
39 TraesCS5D01G109200 chr6A 91.667 60 4 1 5833 5892 13379978 13380036 1.400000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G109200 chr5D 123444999 123451069 6070 False 11212.000000 11212 100.000000 1 6071 1 chr5D.!!$F1 6070
1 TraesCS5D01G109200 chr5D 36487174 36488007 833 True 1304.000000 1304 94.976000 2 831 1 chr5D.!!$R1 829
2 TraesCS5D01G109200 chr5A 136388583 136393593 5010 False 2581.333333 7369 95.264667 892 6022 3 chr5A.!!$F1 5130
3 TraesCS5D01G109200 chr5B 136403793 136408549 4756 False 1617.750000 3070 93.659250 886 5172 4 chr5B.!!$F1 4286
4 TraesCS5D01G109200 chr6B 140088592 140089432 840 True 1310.000000 1310 94.781000 1 842 1 chr6B.!!$R1 841
5 TraesCS5D01G109200 chr6B 712562706 712563539 833 False 1280.000000 1280 94.378000 1 835 1 chr6B.!!$F3 834
6 TraesCS5D01G109200 chr2D 621667931 621668768 837 False 1297.000000 1297 94.643000 2 837 1 chr2D.!!$F1 835
7 TraesCS5D01G109200 chr3B 537418291 537419127 836 False 1293.000000 1293 94.524000 1 839 1 chr3B.!!$F1 838
8 TraesCS5D01G109200 chr2A 592830608 592831420 812 False 1288.000000 1288 95.326000 1 810 1 chr2A.!!$F1 809
9 TraesCS5D01G109200 chr4D 498606663 498607501 838 True 1286.000000 1286 94.411000 3 837 1 chr4D.!!$R3 834
10 TraesCS5D01G109200 chr4D 15241519 15242359 840 True 1280.000000 1280 94.187000 1 839 1 chr4D.!!$R1 838
11 TraesCS5D01G109200 chr2B 690961810 690962645 835 True 1273.000000 1273 94.153000 1 837 1 chr2B.!!$R1 836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.445436 GATCTGCAACCAGTCGCAAG 59.555 55.000 0.0 0.0 40.09 4.01 F
585 589 0.460459 GGCTCCTAGACGAAGGCAAC 60.460 60.000 0.0 0.0 36.51 4.17 F
851 864 0.671781 GCGAGGCATGTGTTCTGTCT 60.672 55.000 0.0 0.0 0.00 3.41 F
2646 3180 0.321298 TTAGGGGTTCTCGCACTTGC 60.321 55.000 0.0 0.0 37.78 4.01 F
3564 4099 2.032377 ACACAACAAACGCATTCTACCG 60.032 45.455 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 2311 0.109412 GCATCAGCTCAAACTGGCAC 60.109 55.000 0.00 0.00 38.26 5.01 R
2646 3180 7.543520 ACATGTCACATAGCATAATATCTCACG 59.456 37.037 0.00 0.00 0.00 4.35 R
2947 3481 8.317679 CCAACAGGATTTCCAATAATACCAAAA 58.682 33.333 0.00 0.00 38.89 2.44 R
4738 5277 1.190323 GACAGCGCTCGGAATTTATCG 59.810 52.381 7.13 0.00 0.00 2.92 R
5341 5888 0.091344 CTAAACGTGTTGAGCGCTCG 59.909 55.000 30.75 21.89 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 5.602978 CCATGAACACCTAGAGTACCCTAAT 59.397 44.000 0.00 0.00 0.00 1.73
70 71 8.019656 AGAGTACCCTAATACAACCATAACAG 57.980 38.462 0.00 0.00 0.00 3.16
106 107 0.465097 CCCTGTGTCATCATCCCTGC 60.465 60.000 0.00 0.00 0.00 4.85
155 156 0.445436 GATCTGCAACCAGTCGCAAG 59.555 55.000 0.00 0.00 40.09 4.01
396 398 1.276859 ATCTCCCACCAGCATCAGCA 61.277 55.000 0.00 0.00 45.49 4.41
399 401 1.604308 CCCACCAGCATCAGCACAA 60.604 57.895 0.00 0.00 45.49 3.33
408 410 2.097825 GCATCAGCACAAAGGAAGGAT 58.902 47.619 0.00 0.00 41.58 3.24
585 589 0.460459 GGCTCCTAGACGAAGGCAAC 60.460 60.000 0.00 0.00 36.51 4.17
588 592 1.546476 CTCCTAGACGAAGGCAACAGT 59.454 52.381 0.00 0.00 36.51 3.55
626 630 2.679930 CGGAGCCCGGAGAAACTTATTT 60.680 50.000 0.73 0.00 44.15 1.40
689 693 1.354101 CCCTAACCCTACCACACACA 58.646 55.000 0.00 0.00 0.00 3.72
720 724 2.251386 AGACCCGAGGTTCCCCCTA 61.251 63.158 0.00 0.00 46.51 3.53
839 852 4.697756 CTTTCCGGGTGCGAGGCA 62.698 66.667 0.00 0.00 35.60 4.75
845 858 2.672996 GGGTGCGAGGCATGTGTT 60.673 61.111 0.00 0.00 41.91 3.32
846 859 2.690778 GGGTGCGAGGCATGTGTTC 61.691 63.158 0.00 0.00 41.91 3.18
847 860 1.672356 GGTGCGAGGCATGTGTTCT 60.672 57.895 0.00 0.00 41.91 3.01
848 861 1.499056 GTGCGAGGCATGTGTTCTG 59.501 57.895 0.00 0.00 41.91 3.02
849 862 1.071299 TGCGAGGCATGTGTTCTGT 59.929 52.632 0.00 0.00 31.71 3.41
850 863 0.950555 TGCGAGGCATGTGTTCTGTC 60.951 55.000 0.00 0.00 31.71 3.51
851 864 0.671781 GCGAGGCATGTGTTCTGTCT 60.672 55.000 0.00 0.00 0.00 3.41
852 865 1.354040 CGAGGCATGTGTTCTGTCTC 58.646 55.000 0.00 0.00 41.02 3.36
853 866 1.067283 CGAGGCATGTGTTCTGTCTCT 60.067 52.381 3.73 0.00 42.01 3.10
854 867 2.164422 CGAGGCATGTGTTCTGTCTCTA 59.836 50.000 3.73 0.00 42.01 2.43
855 868 3.367395 CGAGGCATGTGTTCTGTCTCTAA 60.367 47.826 3.73 0.00 42.01 2.10
856 869 3.929610 GAGGCATGTGTTCTGTCTCTAAC 59.070 47.826 0.00 0.00 41.18 2.34
857 870 3.580458 AGGCATGTGTTCTGTCTCTAACT 59.420 43.478 0.00 0.00 0.00 2.24
858 871 4.040952 AGGCATGTGTTCTGTCTCTAACTT 59.959 41.667 0.00 0.00 0.00 2.66
859 872 4.153117 GGCATGTGTTCTGTCTCTAACTTG 59.847 45.833 0.00 0.00 0.00 3.16
860 873 4.752101 GCATGTGTTCTGTCTCTAACTTGT 59.248 41.667 0.00 0.00 0.00 3.16
861 874 5.237344 GCATGTGTTCTGTCTCTAACTTGTT 59.763 40.000 0.00 0.00 0.00 2.83
862 875 6.423905 GCATGTGTTCTGTCTCTAACTTGTTA 59.576 38.462 0.00 0.00 0.00 2.41
863 876 7.042051 GCATGTGTTCTGTCTCTAACTTGTTAA 60.042 37.037 0.00 0.00 0.00 2.01
864 877 8.826710 CATGTGTTCTGTCTCTAACTTGTTAAA 58.173 33.333 0.00 0.00 0.00 1.52
865 878 8.780846 TGTGTTCTGTCTCTAACTTGTTAAAA 57.219 30.769 0.00 0.00 0.00 1.52
866 879 8.662141 TGTGTTCTGTCTCTAACTTGTTAAAAC 58.338 33.333 0.00 0.00 0.00 2.43
867 880 8.880750 GTGTTCTGTCTCTAACTTGTTAAAACT 58.119 33.333 0.00 0.00 0.00 2.66
868 881 9.444600 TGTTCTGTCTCTAACTTGTTAAAACTT 57.555 29.630 0.00 0.00 0.00 2.66
869 882 9.704098 GTTCTGTCTCTAACTTGTTAAAACTTG 57.296 33.333 0.00 0.00 0.00 3.16
870 883 9.661563 TTCTGTCTCTAACTTGTTAAAACTTGA 57.338 29.630 0.00 0.00 0.00 3.02
871 884 9.314321 TCTGTCTCTAACTTGTTAAAACTTGAG 57.686 33.333 0.00 0.00 0.00 3.02
872 885 9.099454 CTGTCTCTAACTTGTTAAAACTTGAGT 57.901 33.333 0.00 0.00 0.00 3.41
873 886 8.879759 TGTCTCTAACTTGTTAAAACTTGAGTG 58.120 33.333 0.00 0.00 0.00 3.51
874 887 8.336080 GTCTCTAACTTGTTAAAACTTGAGTGG 58.664 37.037 0.00 0.00 0.00 4.00
875 888 8.044908 TCTCTAACTTGTTAAAACTTGAGTGGT 58.955 33.333 0.00 0.00 0.00 4.16
876 889 7.981142 TCTAACTTGTTAAAACTTGAGTGGTG 58.019 34.615 0.00 0.00 0.00 4.17
877 890 6.827586 AACTTGTTAAAACTTGAGTGGTGA 57.172 33.333 0.00 0.00 0.00 4.02
878 891 6.827586 ACTTGTTAAAACTTGAGTGGTGAA 57.172 33.333 0.00 0.00 0.00 3.18
879 892 6.852664 ACTTGTTAAAACTTGAGTGGTGAAG 58.147 36.000 0.00 0.00 0.00 3.02
880 893 6.433093 ACTTGTTAAAACTTGAGTGGTGAAGT 59.567 34.615 0.00 0.00 33.75 3.01
881 894 6.827586 TGTTAAAACTTGAGTGGTGAAGTT 57.172 33.333 0.00 0.00 42.83 2.66
885 898 5.975693 AAACTTGAGTGGTGAAGTTTTGA 57.024 34.783 0.00 0.00 45.71 2.69
886 899 6.530019 AAACTTGAGTGGTGAAGTTTTGAT 57.470 33.333 0.00 0.00 45.71 2.57
887 900 5.757850 ACTTGAGTGGTGAAGTTTTGATC 57.242 39.130 0.00 0.00 0.00 2.92
888 901 5.192927 ACTTGAGTGGTGAAGTTTTGATCA 58.807 37.500 0.00 0.00 0.00 2.92
889 902 5.297776 ACTTGAGTGGTGAAGTTTTGATCAG 59.702 40.000 0.00 0.00 0.00 2.90
890 903 5.034852 TGAGTGGTGAAGTTTTGATCAGA 57.965 39.130 0.00 0.00 0.00 3.27
891 904 5.624159 TGAGTGGTGAAGTTTTGATCAGAT 58.376 37.500 0.00 0.00 0.00 2.90
892 905 5.471116 TGAGTGGTGAAGTTTTGATCAGATG 59.529 40.000 0.00 0.00 0.00 2.90
893 906 5.624159 AGTGGTGAAGTTTTGATCAGATGA 58.376 37.500 0.00 0.00 0.00 2.92
894 907 6.064060 AGTGGTGAAGTTTTGATCAGATGAA 58.936 36.000 0.00 0.00 0.00 2.57
895 908 6.206243 AGTGGTGAAGTTTTGATCAGATGAAG 59.794 38.462 0.00 0.00 0.00 3.02
899 912 7.173907 GGTGAAGTTTTGATCAGATGAAGAGAA 59.826 37.037 0.00 0.00 0.00 2.87
901 914 8.781196 TGAAGTTTTGATCAGATGAAGAGAAAG 58.219 33.333 0.00 0.00 0.00 2.62
1623 2051 4.580167 TGGCTCATCTAAATGTATGTTGCC 59.420 41.667 0.00 0.00 40.58 4.52
1769 2197 4.865925 GGTTTGCACCGAGTTAAACTTTTT 59.134 37.500 0.00 0.00 34.40 1.94
1878 2309 2.517935 CATTGTGTGTGTGTGTGTGTG 58.482 47.619 0.00 0.00 0.00 3.82
1880 2311 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2151 2676 8.784043 GTTTCATCCCATAACTATGATAACACC 58.216 37.037 0.00 0.00 35.75 4.16
2351 2876 0.981956 GCCGTTGCTATTTTTCGTGC 59.018 50.000 0.00 0.00 33.53 5.34
2357 2882 6.427150 CCGTTGCTATTTTTCGTGCTTATAT 58.573 36.000 0.00 0.00 0.00 0.86
2646 3180 0.321298 TTAGGGGTTCTCGCACTTGC 60.321 55.000 0.00 0.00 37.78 4.01
2947 3481 4.841246 CAGATAGGCCCAGATACTAAGGTT 59.159 45.833 0.00 0.00 0.00 3.50
3127 3661 7.363968 GGCTTCAGGTACTTAATCTTAGTGAGT 60.364 40.741 0.00 0.00 34.60 3.41
3170 3704 7.272037 TCAACCAGAAGTTAATTCTTTCCAC 57.728 36.000 0.00 0.00 46.49 4.02
3278 3812 5.527026 AATTTCATCCTCCCTTCTTCTGT 57.473 39.130 0.00 0.00 0.00 3.41
3550 4085 2.277969 CAAATTGGCAGCAACACAACA 58.722 42.857 0.00 0.00 0.00 3.33
3564 4099 2.032377 ACACAACAAACGCATTCTACCG 60.032 45.455 0.00 0.00 0.00 4.02
3565 4100 2.032377 CACAACAAACGCATTCTACCGT 60.032 45.455 0.00 0.00 39.70 4.83
3759 4294 5.453266 CACATGCTGCATAATAAAAGACACG 59.547 40.000 15.78 0.55 0.00 4.49
3799 4334 7.990886 TGTATCCTTACTCCGCTTCATATTTTT 59.009 33.333 0.00 0.00 0.00 1.94
4546 5085 6.741992 TGTTCATGGTAGAATCACATGTTC 57.258 37.500 0.00 0.00 41.91 3.18
4549 5088 6.065976 TCATGGTAGAATCACATGTTCCTT 57.934 37.500 0.00 0.00 41.91 3.36
4574 5113 5.993748 TTCCTTCTGTTTTCAAGGTTGTT 57.006 34.783 0.00 0.00 31.63 2.83
4738 5277 3.105937 GTCTTTGTTTTCAGCGGTTGAC 58.894 45.455 0.00 0.00 34.94 3.18
4757 5296 1.209128 CGATAAATTCCGAGCGCTGT 58.791 50.000 18.48 0.00 0.00 4.40
4886 5425 3.131577 TGGATTTGGAATCAGCAATCAGC 59.868 43.478 3.39 0.00 46.19 4.26
4919 5458 1.065199 TGAGATGGCCTCGCTTGAAAT 60.065 47.619 3.32 0.00 44.92 2.17
4932 5471 6.091169 CCTCGCTTGAAATTTTGCATTGTATT 59.909 34.615 10.71 0.00 0.00 1.89
4933 5472 7.275341 CCTCGCTTGAAATTTTGCATTGTATTA 59.725 33.333 10.71 0.00 0.00 0.98
4934 5473 8.172159 TCGCTTGAAATTTTGCATTGTATTAG 57.828 30.769 10.71 0.00 0.00 1.73
4937 5476 7.608308 TTGAAATTTTGCATTGTATTAGCCC 57.392 32.000 0.00 0.00 0.00 5.19
4940 5479 7.663081 TGAAATTTTGCATTGTATTAGCCCAAA 59.337 29.630 0.00 0.00 0.00 3.28
4998 5543 3.918544 GGCTTTGCTTGCCGGATA 58.081 55.556 5.05 0.00 41.03 2.59
5011 5556 2.017049 GCCGGATAGCATGAGTTTTGT 58.983 47.619 5.05 0.00 0.00 2.83
5012 5557 3.202906 GCCGGATAGCATGAGTTTTGTA 58.797 45.455 5.05 0.00 0.00 2.41
5013 5558 3.002348 GCCGGATAGCATGAGTTTTGTAC 59.998 47.826 5.05 0.00 0.00 2.90
5274 5821 9.762381 ATCTATACCAATGTAAAAAGACCCAAA 57.238 29.630 0.00 0.00 0.00 3.28
5275 5822 9.762381 TCTATACCAATGTAAAAAGACCCAAAT 57.238 29.630 0.00 0.00 0.00 2.32
5276 5823 9.801873 CTATACCAATGTAAAAAGACCCAAATG 57.198 33.333 0.00 0.00 0.00 2.32
5277 5824 5.863965 ACCAATGTAAAAAGACCCAAATGG 58.136 37.500 0.00 0.00 41.37 3.16
5292 5839 5.556006 CCAAATGGGCAGATCCAATTAAT 57.444 39.130 0.00 0.00 37.51 1.40
5293 5840 5.544650 CCAAATGGGCAGATCCAATTAATC 58.455 41.667 0.00 0.00 37.51 1.75
5294 5841 5.306160 CCAAATGGGCAGATCCAATTAATCT 59.694 40.000 0.00 0.00 37.51 2.40
5295 5842 6.453092 CAAATGGGCAGATCCAATTAATCTC 58.547 40.000 0.62 0.00 37.51 2.75
5296 5843 3.743521 TGGGCAGATCCAATTAATCTCG 58.256 45.455 0.62 0.00 36.21 4.04
5297 5844 3.077359 GGGCAGATCCAATTAATCTCGG 58.923 50.000 0.62 0.00 36.21 4.63
5298 5845 2.485814 GGCAGATCCAATTAATCTCGGC 59.514 50.000 0.62 2.99 31.05 5.54
5299 5846 2.485814 GCAGATCCAATTAATCTCGGCC 59.514 50.000 0.00 0.00 31.05 6.13
5300 5847 3.743521 CAGATCCAATTAATCTCGGCCA 58.256 45.455 2.24 0.00 31.05 5.36
5301 5848 4.330250 CAGATCCAATTAATCTCGGCCAT 58.670 43.478 2.24 0.00 31.05 4.40
5302 5849 4.394300 CAGATCCAATTAATCTCGGCCATC 59.606 45.833 2.24 0.00 31.05 3.51
5303 5850 3.855255 TCCAATTAATCTCGGCCATCA 57.145 42.857 2.24 0.00 0.00 3.07
5304 5851 4.163441 TCCAATTAATCTCGGCCATCAA 57.837 40.909 2.24 0.00 0.00 2.57
5305 5852 4.531854 TCCAATTAATCTCGGCCATCAAA 58.468 39.130 2.24 0.00 0.00 2.69
5306 5853 5.139727 TCCAATTAATCTCGGCCATCAAAT 58.860 37.500 2.24 0.00 0.00 2.32
5307 5854 5.241506 TCCAATTAATCTCGGCCATCAAATC 59.758 40.000 2.24 0.00 0.00 2.17
5308 5855 5.009911 CCAATTAATCTCGGCCATCAAATCA 59.990 40.000 2.24 0.00 0.00 2.57
5309 5856 6.294899 CCAATTAATCTCGGCCATCAAATCAT 60.295 38.462 2.24 0.00 0.00 2.45
5310 5857 5.694231 TTAATCTCGGCCATCAAATCATG 57.306 39.130 2.24 0.00 0.00 3.07
5311 5858 2.715749 TCTCGGCCATCAAATCATGT 57.284 45.000 2.24 0.00 0.00 3.21
5312 5859 2.564771 TCTCGGCCATCAAATCATGTC 58.435 47.619 2.24 0.00 0.00 3.06
5313 5860 2.093021 TCTCGGCCATCAAATCATGTCA 60.093 45.455 2.24 0.00 0.00 3.58
5314 5861 2.684374 CTCGGCCATCAAATCATGTCAA 59.316 45.455 2.24 0.00 0.00 3.18
5315 5862 3.289836 TCGGCCATCAAATCATGTCAAT 58.710 40.909 2.24 0.00 0.00 2.57
5316 5863 3.316029 TCGGCCATCAAATCATGTCAATC 59.684 43.478 2.24 0.00 0.00 2.67
5317 5864 3.551454 CGGCCATCAAATCATGTCAATCC 60.551 47.826 2.24 0.00 0.00 3.01
5318 5865 3.385433 GGCCATCAAATCATGTCAATCCA 59.615 43.478 0.00 0.00 0.00 3.41
5319 5866 4.141892 GGCCATCAAATCATGTCAATCCAA 60.142 41.667 0.00 0.00 0.00 3.53
5320 5867 4.807304 GCCATCAAATCATGTCAATCCAAC 59.193 41.667 0.00 0.00 0.00 3.77
5321 5868 5.038683 CCATCAAATCATGTCAATCCAACG 58.961 41.667 0.00 0.00 0.00 4.10
5322 5869 5.163632 CCATCAAATCATGTCAATCCAACGA 60.164 40.000 0.00 0.00 0.00 3.85
5323 5870 5.295431 TCAAATCATGTCAATCCAACGAC 57.705 39.130 0.00 0.00 0.00 4.34
5324 5871 4.155826 TCAAATCATGTCAATCCAACGACC 59.844 41.667 0.00 0.00 0.00 4.79
5325 5872 3.634397 ATCATGTCAATCCAACGACCT 57.366 42.857 0.00 0.00 0.00 3.85
5326 5873 4.753516 ATCATGTCAATCCAACGACCTA 57.246 40.909 0.00 0.00 0.00 3.08
5327 5874 4.123497 TCATGTCAATCCAACGACCTAG 57.877 45.455 0.00 0.00 0.00 3.02
5328 5875 3.767131 TCATGTCAATCCAACGACCTAGA 59.233 43.478 0.00 0.00 0.00 2.43
5329 5876 3.587797 TGTCAATCCAACGACCTAGAC 57.412 47.619 0.00 0.00 0.00 2.59
5330 5877 3.162666 TGTCAATCCAACGACCTAGACT 58.837 45.455 0.00 0.00 0.00 3.24
5331 5878 3.056821 TGTCAATCCAACGACCTAGACTG 60.057 47.826 0.00 0.00 0.00 3.51
5332 5879 2.094182 TCAATCCAACGACCTAGACTGC 60.094 50.000 0.00 0.00 0.00 4.40
5333 5880 1.853963 ATCCAACGACCTAGACTGCT 58.146 50.000 0.00 0.00 0.00 4.24
5334 5881 1.629043 TCCAACGACCTAGACTGCTT 58.371 50.000 0.00 0.00 0.00 3.91
5335 5882 1.544691 TCCAACGACCTAGACTGCTTC 59.455 52.381 0.00 0.00 0.00 3.86
5336 5883 1.272490 CCAACGACCTAGACTGCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
5337 5884 2.288825 CCAACGACCTAGACTGCTTCAA 60.289 50.000 0.00 0.00 0.00 2.69
5338 5885 3.589988 CAACGACCTAGACTGCTTCAAT 58.410 45.455 0.00 0.00 0.00 2.57
5339 5886 3.238108 ACGACCTAGACTGCTTCAATG 57.762 47.619 0.00 0.00 0.00 2.82
5340 5887 2.563179 ACGACCTAGACTGCTTCAATGT 59.437 45.455 0.00 0.00 0.00 2.71
5341 5888 3.182967 CGACCTAGACTGCTTCAATGTC 58.817 50.000 0.00 0.00 0.00 3.06
5342 5889 3.182967 GACCTAGACTGCTTCAATGTCG 58.817 50.000 0.00 0.00 36.01 4.35
5343 5890 2.826128 ACCTAGACTGCTTCAATGTCGA 59.174 45.455 0.00 0.00 36.01 4.20
5344 5891 3.119316 ACCTAGACTGCTTCAATGTCGAG 60.119 47.826 0.00 0.00 36.01 4.04
5345 5892 1.719600 AGACTGCTTCAATGTCGAGC 58.280 50.000 0.00 0.00 36.01 5.03
5346 5893 0.368227 GACTGCTTCAATGTCGAGCG 59.632 55.000 0.00 0.00 39.23 5.03
5347 5894 1.059994 CTGCTTCAATGTCGAGCGC 59.940 57.895 0.00 0.00 39.23 5.92
5348 5895 1.357258 CTGCTTCAATGTCGAGCGCT 61.357 55.000 11.27 11.27 39.23 5.92
5349 5896 1.346538 GCTTCAATGTCGAGCGCTC 59.653 57.895 27.64 27.64 0.00 5.03
5350 5897 1.354337 GCTTCAATGTCGAGCGCTCA 61.354 55.000 34.69 18.66 0.00 4.26
5351 5898 1.070821 CTTCAATGTCGAGCGCTCAA 58.929 50.000 34.69 17.41 0.00 3.02
5352 5899 0.790207 TTCAATGTCGAGCGCTCAAC 59.210 50.000 34.69 28.50 0.00 3.18
5353 5900 0.319469 TCAATGTCGAGCGCTCAACA 60.319 50.000 31.47 31.47 0.00 3.33
5354 5901 0.179240 CAATGTCGAGCGCTCAACAC 60.179 55.000 31.93 24.81 0.00 3.32
5355 5902 1.617755 AATGTCGAGCGCTCAACACG 61.618 55.000 31.93 20.44 0.00 4.49
5356 5903 2.729862 GTCGAGCGCTCAACACGT 60.730 61.111 34.69 0.00 0.00 4.49
5357 5904 2.027024 TCGAGCGCTCAACACGTT 59.973 55.556 34.69 0.00 0.00 3.99
5358 5905 1.590525 TCGAGCGCTCAACACGTTT 60.591 52.632 34.69 0.00 0.00 3.60
5359 5906 0.318022 TCGAGCGCTCAACACGTTTA 60.318 50.000 34.69 4.78 0.00 2.01
5360 5907 0.091344 CGAGCGCTCAACACGTTTAG 59.909 55.000 34.69 12.34 0.00 1.85
5361 5908 1.137513 GAGCGCTCAACACGTTTAGT 58.862 50.000 31.91 0.00 0.00 2.24
5375 5922 6.654519 CACGTTTAGTGTGCAGTTAATTTC 57.345 37.500 0.00 0.00 45.51 2.17
5376 5923 6.195868 CACGTTTAGTGTGCAGTTAATTTCA 58.804 36.000 0.00 0.00 45.51 2.69
5377 5924 6.855914 CACGTTTAGTGTGCAGTTAATTTCAT 59.144 34.615 0.00 0.00 45.51 2.57
5378 5925 8.012809 CACGTTTAGTGTGCAGTTAATTTCATA 58.987 33.333 0.00 0.00 45.51 2.15
5379 5926 8.013378 ACGTTTAGTGTGCAGTTAATTTCATAC 58.987 33.333 0.00 0.00 0.00 2.39
5380 5927 8.012809 CGTTTAGTGTGCAGTTAATTTCATACA 58.987 33.333 0.00 0.00 0.00 2.29
5381 5928 9.672086 GTTTAGTGTGCAGTTAATTTCATACAA 57.328 29.630 0.00 0.00 0.00 2.41
5385 5932 9.762933 AGTGTGCAGTTAATTTCATACAAAAAT 57.237 25.926 0.00 0.00 0.00 1.82
5412 5959 8.854979 GTGCTAATCACATAATAACATGCAAA 57.145 30.769 0.00 0.00 44.98 3.68
5413 5960 9.467258 GTGCTAATCACATAATAACATGCAAAT 57.533 29.630 0.00 0.00 44.98 2.32
5470 6017 7.810766 ATACTTCCAAAATTAACGTGCATTG 57.189 32.000 0.00 0.00 0.00 2.82
5471 6018 4.447389 ACTTCCAAAATTAACGTGCATTGC 59.553 37.500 0.46 0.46 0.00 3.56
5472 6019 3.982475 TCCAAAATTAACGTGCATTGCA 58.018 36.364 7.38 7.38 35.60 4.08
5488 6035 3.955429 GCACGTGCACATTGACTAG 57.045 52.632 34.52 0.00 41.59 2.57
5489 6036 1.148310 GCACGTGCACATTGACTAGT 58.852 50.000 34.52 0.00 41.59 2.57
5490 6037 2.333926 GCACGTGCACATTGACTAGTA 58.666 47.619 34.52 0.00 41.59 1.82
5491 6038 2.734606 GCACGTGCACATTGACTAGTAA 59.265 45.455 34.52 0.00 41.59 2.24
5492 6039 3.181530 GCACGTGCACATTGACTAGTAAG 60.182 47.826 34.52 0.00 41.59 2.34
5558 6105 5.557891 ACAAAGAGATAGTTCATTGCAGC 57.442 39.130 0.00 0.00 0.00 5.25
5559 6106 5.251764 ACAAAGAGATAGTTCATTGCAGCT 58.748 37.500 0.00 0.00 0.00 4.24
5560 6107 5.123502 ACAAAGAGATAGTTCATTGCAGCTG 59.876 40.000 10.11 10.11 0.00 4.24
5602 6312 1.411394 CTTTAACTCGTTCACGGCGA 58.589 50.000 16.62 0.00 40.29 5.54
5624 6334 1.809567 GCAGTTGCAGGGAGGTTTGG 61.810 60.000 0.00 0.00 41.59 3.28
5638 6348 2.876581 GGTTTGGAATGAACCTGAGGT 58.123 47.619 0.00 0.00 42.58 3.85
5639 6349 2.558359 GGTTTGGAATGAACCTGAGGTG 59.442 50.000 4.15 0.00 42.58 4.00
5646 6356 4.222145 GGAATGAACCTGAGGTGTACAGTA 59.778 45.833 4.15 0.00 35.34 2.74
5652 6362 1.204941 CTGAGGTGTACAGTAGGGTGC 59.795 57.143 0.00 0.00 0.00 5.01
5660 6370 5.243207 GTGTACAGTAGGGTGCAGTAAAAT 58.757 41.667 0.00 0.00 34.01 1.82
5661 6371 5.350640 GTGTACAGTAGGGTGCAGTAAAATC 59.649 44.000 0.00 0.00 34.01 2.17
5663 6373 3.259876 ACAGTAGGGTGCAGTAAAATCGA 59.740 43.478 0.00 0.00 0.00 3.59
5664 6374 3.865745 CAGTAGGGTGCAGTAAAATCGAG 59.134 47.826 0.00 0.00 0.00 4.04
5666 6376 1.628846 AGGGTGCAGTAAAATCGAGGT 59.371 47.619 0.00 0.00 0.00 3.85
5667 6377 2.007608 GGGTGCAGTAAAATCGAGGTC 58.992 52.381 0.00 0.00 0.00 3.85
5668 6378 2.614481 GGGTGCAGTAAAATCGAGGTCA 60.614 50.000 0.00 0.00 0.00 4.02
5698 6410 1.398958 TTTGGAGGTTGTTGCTGCCC 61.399 55.000 0.00 0.00 0.00 5.36
5705 6417 0.451783 GTTGTTGCTGCCCTAATCGG 59.548 55.000 0.00 0.00 0.00 4.18
5712 6424 1.202770 GCTGCCCTAATCGGTGGTTAT 60.203 52.381 0.00 0.00 0.00 1.89
5714 6426 3.551846 CTGCCCTAATCGGTGGTTATTT 58.448 45.455 0.00 0.00 0.00 1.40
5722 6434 7.415206 CCCTAATCGGTGGTTATTTTTCTTCAG 60.415 40.741 0.00 0.00 0.00 3.02
5724 6436 5.682943 TCGGTGGTTATTTTTCTTCAGTG 57.317 39.130 0.00 0.00 0.00 3.66
5748 6460 5.695816 GGCTTCTGCTATCTTTGATGACTAG 59.304 44.000 0.00 0.00 39.59 2.57
5751 6463 8.087750 GCTTCTGCTATCTTTGATGACTAGTAT 58.912 37.037 0.00 0.00 36.03 2.12
5774 6487 9.262472 GTATTTTATGTTGCTTGACTTTACTCG 57.738 33.333 0.00 0.00 0.00 4.18
5777 6490 2.286833 TGTTGCTTGACTTTACTCGTGC 59.713 45.455 0.00 0.00 0.00 5.34
5784 6497 4.371855 TGACTTTACTCGTGCCATCTAG 57.628 45.455 0.00 0.00 0.00 2.43
5800 6513 5.931146 GCCATCTAGGATCATTGTAACAGAG 59.069 44.000 0.00 0.00 41.22 3.35
5801 6514 6.239430 GCCATCTAGGATCATTGTAACAGAGA 60.239 42.308 0.00 0.00 41.22 3.10
5802 6515 7.687837 GCCATCTAGGATCATTGTAACAGAGAA 60.688 40.741 0.00 0.00 41.22 2.87
5803 6516 8.206867 CCATCTAGGATCATTGTAACAGAGAAA 58.793 37.037 0.00 0.00 41.22 2.52
5804 6517 9.258826 CATCTAGGATCATTGTAACAGAGAAAG 57.741 37.037 0.00 0.00 0.00 2.62
5805 6518 8.595362 TCTAGGATCATTGTAACAGAGAAAGA 57.405 34.615 0.00 0.00 0.00 2.52
5806 6519 9.035890 TCTAGGATCATTGTAACAGAGAAAGAA 57.964 33.333 0.00 0.00 0.00 2.52
5807 6520 9.658799 CTAGGATCATTGTAACAGAGAAAGAAA 57.341 33.333 0.00 0.00 0.00 2.52
5809 6522 9.171877 AGGATCATTGTAACAGAGAAAGAAATC 57.828 33.333 0.00 0.00 0.00 2.17
5810 6523 8.950210 GGATCATTGTAACAGAGAAAGAAATCA 58.050 33.333 0.00 0.00 0.00 2.57
5813 6526 9.342308 TCATTGTAACAGAGAAAGAAATCAAGT 57.658 29.630 0.00 0.00 0.00 3.16
5817 6530 9.832445 TGTAACAGAGAAAGAAATCAAGTAACT 57.168 29.630 0.00 0.00 0.00 2.24
5819 6532 8.964476 AACAGAGAAAGAAATCAAGTAACTCA 57.036 30.769 0.00 0.00 0.00 3.41
5820 6533 9.566432 AACAGAGAAAGAAATCAAGTAACTCAT 57.434 29.630 0.00 0.00 0.00 2.90
5821 6534 8.997323 ACAGAGAAAGAAATCAAGTAACTCATG 58.003 33.333 0.00 0.00 0.00 3.07
5822 6535 9.212641 CAGAGAAAGAAATCAAGTAACTCATGA 57.787 33.333 0.00 0.00 0.00 3.07
5823 6536 9.784531 AGAGAAAGAAATCAAGTAACTCATGAA 57.215 29.630 0.00 0.00 0.00 2.57
5824 6537 9.818796 GAGAAAGAAATCAAGTAACTCATGAAC 57.181 33.333 0.00 0.00 0.00 3.18
5825 6538 9.566432 AGAAAGAAATCAAGTAACTCATGAACT 57.434 29.630 0.00 0.00 0.00 3.01
5826 6539 9.604626 GAAAGAAATCAAGTAACTCATGAACTG 57.395 33.333 0.00 0.00 0.00 3.16
5827 6540 7.678947 AGAAATCAAGTAACTCATGAACTGG 57.321 36.000 0.00 0.00 0.00 4.00
5828 6541 5.886960 AATCAAGTAACTCATGAACTGGC 57.113 39.130 0.00 0.00 0.00 4.85
5829 6542 4.623932 TCAAGTAACTCATGAACTGGCT 57.376 40.909 0.00 0.00 0.00 4.75
5830 6543 5.738619 TCAAGTAACTCATGAACTGGCTA 57.261 39.130 0.00 0.00 0.00 3.93
5831 6544 5.724328 TCAAGTAACTCATGAACTGGCTAG 58.276 41.667 0.00 0.00 0.00 3.42
5832 6545 5.480422 TCAAGTAACTCATGAACTGGCTAGA 59.520 40.000 3.17 0.00 0.00 2.43
5833 6546 6.014584 TCAAGTAACTCATGAACTGGCTAGAA 60.015 38.462 3.17 0.00 0.00 2.10
5834 6547 6.552445 AGTAACTCATGAACTGGCTAGAAT 57.448 37.500 3.17 0.00 0.00 2.40
5835 6548 7.661536 AGTAACTCATGAACTGGCTAGAATA 57.338 36.000 3.17 0.00 0.00 1.75
5836 6549 7.721402 AGTAACTCATGAACTGGCTAGAATAG 58.279 38.462 3.17 0.00 43.09 1.73
5870 6583 2.697751 AGTAGCTCATGAACTGGCTAGG 59.302 50.000 13.12 0.00 35.59 3.02
5898 6611 8.916628 AGCTAGATTTTTCTCCTCCAAATATC 57.083 34.615 0.00 0.00 0.00 1.63
5910 6623 4.455606 CTCCAAATATCTGGAAGGACACC 58.544 47.826 0.00 0.00 44.97 4.16
5914 6627 1.335132 TATCTGGAAGGACACCGCCC 61.335 60.000 0.00 0.00 0.00 6.13
5915 6628 3.322466 CTGGAAGGACACCGCCCT 61.322 66.667 0.00 0.00 35.03 5.19
5916 6629 3.612247 CTGGAAGGACACCGCCCTG 62.612 68.421 0.00 0.00 33.55 4.45
5917 6630 3.319198 GGAAGGACACCGCCCTGA 61.319 66.667 0.00 0.00 33.55 3.86
5923 6636 2.034066 ACACCGCCCTGAATGTGG 59.966 61.111 0.00 0.00 39.33 4.17
5938 6651 8.217799 CCCTGAATGTGGTTATTCCTCTTATTA 58.782 37.037 0.00 0.00 36.46 0.98
5948 6661 9.099454 GGTTATTCCTCTTATTATAAGCGATGG 57.901 37.037 7.08 6.87 0.00 3.51
5960 6673 5.916661 ATAAGCGATGGTACGATCCTTAT 57.083 39.130 21.89 21.89 35.09 1.73
5961 6674 3.577649 AGCGATGGTACGATCCTTATG 57.422 47.619 11.74 0.00 35.09 1.90
6038 6751 9.995003 AAAAATAGAGGTATTTTCACATTGCAA 57.005 25.926 0.00 0.00 44.62 4.08
6039 6752 9.995003 AAAATAGAGGTATTTTCACATTGCAAA 57.005 25.926 1.71 0.00 42.72 3.68
6040 6753 9.643693 AAATAGAGGTATTTTCACATTGCAAAG 57.356 29.630 1.71 0.19 35.66 2.77
6041 6754 5.473039 AGAGGTATTTTCACATTGCAAAGC 58.527 37.500 1.71 0.00 0.00 3.51
6042 6755 5.010922 AGAGGTATTTTCACATTGCAAAGCA 59.989 36.000 1.71 0.00 36.47 3.91
6056 6769 5.323371 TGCAAAGCAACAAAGTCTTTACT 57.677 34.783 0.00 0.00 34.76 2.24
6057 6770 5.719173 TGCAAAGCAACAAAGTCTTTACTT 58.281 33.333 0.00 0.00 40.97 2.24
6058 6771 5.804979 TGCAAAGCAACAAAGTCTTTACTTC 59.195 36.000 0.00 0.00 39.36 3.01
6059 6772 6.036470 GCAAAGCAACAAAGTCTTTACTTCT 58.964 36.000 0.00 0.00 45.37 2.85
6060 6773 6.531594 GCAAAGCAACAAAGTCTTTACTTCTT 59.468 34.615 0.00 0.00 45.37 2.52
6061 6774 7.253783 GCAAAGCAACAAAGTCTTTACTTCTTC 60.254 37.037 0.00 0.00 45.37 2.87
6062 6775 7.631717 AAGCAACAAAGTCTTTACTTCTTCT 57.368 32.000 0.00 0.00 45.37 2.85
6063 6776 7.252965 AGCAACAAAGTCTTTACTTCTTCTC 57.747 36.000 0.00 0.00 45.37 2.87
6064 6777 6.823689 AGCAACAAAGTCTTTACTTCTTCTCA 59.176 34.615 0.00 0.00 45.37 3.27
6065 6778 7.336931 AGCAACAAAGTCTTTACTTCTTCTCAA 59.663 33.333 0.00 0.00 45.37 3.02
6066 6779 7.641802 GCAACAAAGTCTTTACTTCTTCTCAAG 59.358 37.037 0.00 0.00 45.37 3.02
6067 6780 8.883731 CAACAAAGTCTTTACTTCTTCTCAAGA 58.116 33.333 0.00 0.00 45.37 3.02
6068 6781 9.449719 AACAAAGTCTTTACTTCTTCTCAAGAA 57.550 29.630 0.00 0.00 45.37 2.52
6069 6782 9.449719 ACAAAGTCTTTACTTCTTCTCAAGAAA 57.550 29.630 0.00 0.00 45.37 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 8.253810 CAGAGATCTTCTTCTGTTATGGTTGTA 58.746 37.037 0.00 0.00 32.41 2.41
70 71 2.102925 CAGGGCTCCAGAGATCTTCTTC 59.897 54.545 0.00 0.00 32.41 2.87
106 107 2.419851 GCAGGGGTCTTCTCTCAAGATG 60.420 54.545 0.00 0.00 0.00 2.90
204 205 0.106708 AGCGCTGGTGTCAAGAAAGA 59.893 50.000 10.39 0.00 0.00 2.52
396 398 4.985538 TGCTGTTCTTATCCTTCCTTTGT 58.014 39.130 0.00 0.00 0.00 2.83
399 401 3.009473 TGCTGCTGTTCTTATCCTTCCTT 59.991 43.478 0.00 0.00 0.00 3.36
408 410 3.148412 TGATTTGCTGCTGCTGTTCTTA 58.852 40.909 17.00 0.00 40.48 2.10
689 693 1.874345 CGGGTCTGTTCGCTAGGTGT 61.874 60.000 0.00 0.00 0.00 4.16
748 752 2.283676 TCGCCGGTTCCCTCTCTT 60.284 61.111 1.90 0.00 0.00 2.85
821 834 4.699522 GCCTCGCACCCGGAAAGT 62.700 66.667 0.73 0.00 34.56 2.66
822 835 3.976701 ATGCCTCGCACCCGGAAAG 62.977 63.158 0.73 0.00 43.04 2.62
839 852 8.958119 TTTAACAAGTTAGAGACAGAACACAT 57.042 30.769 0.00 0.00 0.00 3.21
842 855 9.444600 AAGTTTTAACAAGTTAGAGACAGAACA 57.555 29.630 0.00 0.00 0.00 3.18
843 856 9.704098 CAAGTTTTAACAAGTTAGAGACAGAAC 57.296 33.333 0.00 0.00 0.00 3.01
844 857 9.661563 TCAAGTTTTAACAAGTTAGAGACAGAA 57.338 29.630 0.00 0.00 0.00 3.02
845 858 9.314321 CTCAAGTTTTAACAAGTTAGAGACAGA 57.686 33.333 0.00 0.00 0.00 3.41
846 859 9.099454 ACTCAAGTTTTAACAAGTTAGAGACAG 57.901 33.333 9.99 2.01 0.00 3.51
847 860 8.879759 CACTCAAGTTTTAACAAGTTAGAGACA 58.120 33.333 9.99 0.00 0.00 3.41
848 861 8.336080 CCACTCAAGTTTTAACAAGTTAGAGAC 58.664 37.037 9.99 4.16 0.00 3.36
849 862 8.044908 ACCACTCAAGTTTTAACAAGTTAGAGA 58.955 33.333 9.99 0.00 0.00 3.10
850 863 8.122952 CACCACTCAAGTTTTAACAAGTTAGAG 58.877 37.037 0.00 0.00 0.00 2.43
851 864 7.825270 TCACCACTCAAGTTTTAACAAGTTAGA 59.175 33.333 0.00 0.00 0.00 2.10
852 865 7.981142 TCACCACTCAAGTTTTAACAAGTTAG 58.019 34.615 0.00 0.00 0.00 2.34
853 866 7.925043 TCACCACTCAAGTTTTAACAAGTTA 57.075 32.000 0.00 0.00 0.00 2.24
854 867 6.827586 TCACCACTCAAGTTTTAACAAGTT 57.172 33.333 0.00 0.00 0.00 2.66
855 868 6.433093 ACTTCACCACTCAAGTTTTAACAAGT 59.567 34.615 0.00 0.00 27.81 3.16
856 869 6.852664 ACTTCACCACTCAAGTTTTAACAAG 58.147 36.000 0.00 0.00 27.81 3.16
857 870 6.827586 ACTTCACCACTCAAGTTTTAACAA 57.172 33.333 0.00 0.00 27.81 2.83
858 871 6.827586 AACTTCACCACTCAAGTTTTAACA 57.172 33.333 0.00 0.00 39.34 2.41
864 877 5.652014 TGATCAAAACTTCACCACTCAAGTT 59.348 36.000 0.00 0.00 43.28 2.66
865 878 5.192927 TGATCAAAACTTCACCACTCAAGT 58.807 37.500 0.00 0.00 34.16 3.16
866 879 5.528690 TCTGATCAAAACTTCACCACTCAAG 59.471 40.000 0.00 0.00 0.00 3.02
867 880 5.436175 TCTGATCAAAACTTCACCACTCAA 58.564 37.500 0.00 0.00 0.00 3.02
868 881 5.034852 TCTGATCAAAACTTCACCACTCA 57.965 39.130 0.00 0.00 0.00 3.41
869 882 5.702670 TCATCTGATCAAAACTTCACCACTC 59.297 40.000 0.00 0.00 0.00 3.51
870 883 5.624159 TCATCTGATCAAAACTTCACCACT 58.376 37.500 0.00 0.00 0.00 4.00
871 884 5.947228 TCATCTGATCAAAACTTCACCAC 57.053 39.130 0.00 0.00 0.00 4.16
872 885 6.298361 TCTTCATCTGATCAAAACTTCACCA 58.702 36.000 0.00 0.00 0.00 4.17
873 886 6.652481 TCTCTTCATCTGATCAAAACTTCACC 59.348 38.462 0.00 0.00 0.00 4.02
874 887 7.664082 TCTCTTCATCTGATCAAAACTTCAC 57.336 36.000 0.00 0.00 0.00 3.18
875 888 8.681486 TTTCTCTTCATCTGATCAAAACTTCA 57.319 30.769 0.00 0.00 0.00 3.02
876 889 8.997323 TCTTTCTCTTCATCTGATCAAAACTTC 58.003 33.333 0.00 0.00 0.00 3.01
877 890 8.915057 TCTTTCTCTTCATCTGATCAAAACTT 57.085 30.769 0.00 0.00 0.00 2.66
878 891 8.915057 TTCTTTCTCTTCATCTGATCAAAACT 57.085 30.769 0.00 0.00 0.00 2.66
879 892 9.956720 TTTTCTTTCTCTTCATCTGATCAAAAC 57.043 29.630 0.00 0.00 0.00 2.43
956 969 1.302832 GGTGGAGCTGAACCTGGTG 60.303 63.158 0.00 0.00 33.40 4.17
1068 1092 1.764571 CGGTGGTTGGTGAGAAGGGA 61.765 60.000 0.00 0.00 0.00 4.20
1524 1948 7.219535 GCATACTGTTGTTTTGCTTATGATGAG 59.780 37.037 0.00 0.00 33.85 2.90
1623 2051 3.950397 TGGCCTATGAAACCAACAGTAG 58.050 45.455 3.32 0.00 0.00 2.57
1769 2197 4.929211 TGATTCGATTCGCAGAAGAGAAAA 59.071 37.500 0.00 0.00 45.90 2.29
1878 2309 1.068748 CATCAGCTCAAACTGGCACAC 60.069 52.381 0.00 0.00 38.26 3.82
1880 2311 0.109412 GCATCAGCTCAAACTGGCAC 60.109 55.000 0.00 0.00 38.26 5.01
2646 3180 7.543520 ACATGTCACATAGCATAATATCTCACG 59.456 37.037 0.00 0.00 0.00 4.35
2947 3481 8.317679 CCAACAGGATTTCCAATAATACCAAAA 58.682 33.333 0.00 0.00 38.89 2.44
3127 3661 6.097356 GGTTGAAATAGAGTACGTGATGTGA 58.903 40.000 0.00 0.00 0.00 3.58
3384 3918 2.369394 CCTACAAGTTTCCCATCAGGC 58.631 52.381 0.00 0.00 34.51 4.85
3550 4085 1.796459 GTGACACGGTAGAATGCGTTT 59.204 47.619 0.00 0.00 0.00 3.60
3743 4278 9.123709 TGAAAAATGACGTGTCTTTTATTATGC 57.876 29.630 12.49 0.19 36.38 3.14
3799 4334 2.028476 ACGACAAACTGTATAGCTGCCA 60.028 45.455 0.00 0.00 0.00 4.92
4098 4633 8.698854 GCGCTTGCTGCAAAATTATATTATTAA 58.301 29.630 16.74 0.00 43.06 1.40
4549 5088 6.764379 ACAACCTTGAAAACAGAAGGAAAAA 58.236 32.000 0.00 0.00 41.26 1.94
4716 5255 2.750166 TCAACCGCTGAAAACAAAGACA 59.250 40.909 0.00 0.00 0.00 3.41
4738 5277 1.190323 GACAGCGCTCGGAATTTATCG 59.810 52.381 7.13 0.00 0.00 2.92
4740 5279 2.309528 TGACAGCGCTCGGAATTTAT 57.690 45.000 7.13 0.00 0.00 1.40
4886 5425 4.125703 GGCCATCTCACAATCTACTCAAG 58.874 47.826 0.00 0.00 0.00 3.02
4940 5479 8.530311 TGATGCACCAACTTCAAACAAATATAT 58.470 29.630 0.00 0.00 0.00 0.86
4994 5539 8.894768 ATTCTAGTACAAAACTCATGCTATCC 57.105 34.615 0.00 0.00 39.80 2.59
5155 5701 2.858344 CCGGCGACTCATTTAACTGTAG 59.142 50.000 9.30 0.00 0.00 2.74
5248 5795 9.762381 TTTGGGTCTTTTTACATTGGTATAGAT 57.238 29.630 0.00 0.00 0.00 1.98
5249 5796 9.762381 ATTTGGGTCTTTTTACATTGGTATAGA 57.238 29.630 0.00 0.00 0.00 1.98
5250 5797 9.801873 CATTTGGGTCTTTTTACATTGGTATAG 57.198 33.333 0.00 0.00 0.00 1.31
5251 5798 8.754080 CCATTTGGGTCTTTTTACATTGGTATA 58.246 33.333 0.00 0.00 0.00 1.47
5252 5799 7.619965 CCATTTGGGTCTTTTTACATTGGTAT 58.380 34.615 0.00 0.00 0.00 2.73
5253 5800 6.998802 CCATTTGGGTCTTTTTACATTGGTA 58.001 36.000 0.00 0.00 0.00 3.25
5254 5801 5.863965 CCATTTGGGTCTTTTTACATTGGT 58.136 37.500 0.00 0.00 0.00 3.67
5269 5816 9.357742 GAGATTAATTGGATCTGCCCATTTGGG 62.358 44.444 11.52 11.52 44.64 4.12
5270 5817 5.306160 AGATTAATTGGATCTGCCCATTTGG 59.694 40.000 5.62 0.00 34.16 3.28
5271 5818 6.415206 AGATTAATTGGATCTGCCCATTTG 57.585 37.500 5.62 0.00 34.16 2.32
5272 5819 5.242393 CGAGATTAATTGGATCTGCCCATTT 59.758 40.000 9.96 0.00 34.16 2.32
5273 5820 4.763793 CGAGATTAATTGGATCTGCCCATT 59.236 41.667 9.96 0.00 36.15 3.16
5274 5821 4.330250 CGAGATTAATTGGATCTGCCCAT 58.670 43.478 9.96 0.00 35.87 4.00
5275 5822 3.496692 CCGAGATTAATTGGATCTGCCCA 60.497 47.826 9.96 0.00 34.13 5.36
5276 5823 3.077359 CCGAGATTAATTGGATCTGCCC 58.923 50.000 9.96 0.00 34.13 5.36
5277 5824 2.485814 GCCGAGATTAATTGGATCTGCC 59.514 50.000 9.96 0.00 34.13 4.85
5278 5825 2.485814 GGCCGAGATTAATTGGATCTGC 59.514 50.000 9.96 8.37 34.13 4.26
5279 5826 3.743521 TGGCCGAGATTAATTGGATCTG 58.256 45.455 9.96 4.52 34.13 2.90
5280 5827 4.042062 TGATGGCCGAGATTAATTGGATCT 59.958 41.667 0.00 6.01 36.60 2.75
5281 5828 4.326826 TGATGGCCGAGATTAATTGGATC 58.673 43.478 0.00 0.00 0.00 3.36
5282 5829 4.371624 TGATGGCCGAGATTAATTGGAT 57.628 40.909 0.00 0.00 0.00 3.41
5283 5830 3.855255 TGATGGCCGAGATTAATTGGA 57.145 42.857 0.00 0.00 0.00 3.53
5284 5831 4.916983 TTTGATGGCCGAGATTAATTGG 57.083 40.909 0.00 0.00 0.00 3.16
5285 5832 6.075762 TGATTTGATGGCCGAGATTAATTG 57.924 37.500 0.00 0.00 0.00 2.32
5286 5833 6.266103 ACATGATTTGATGGCCGAGATTAATT 59.734 34.615 0.00 0.00 0.00 1.40
5287 5834 5.771666 ACATGATTTGATGGCCGAGATTAAT 59.228 36.000 0.00 0.00 0.00 1.40
5288 5835 5.132502 ACATGATTTGATGGCCGAGATTAA 58.867 37.500 0.00 0.00 0.00 1.40
5289 5836 4.717877 ACATGATTTGATGGCCGAGATTA 58.282 39.130 0.00 0.00 0.00 1.75
5290 5837 3.559069 ACATGATTTGATGGCCGAGATT 58.441 40.909 0.00 0.00 0.00 2.40
5291 5838 3.144506 GACATGATTTGATGGCCGAGAT 58.855 45.455 0.00 0.00 0.00 2.75
5292 5839 2.093021 TGACATGATTTGATGGCCGAGA 60.093 45.455 0.00 0.00 29.16 4.04
5293 5840 2.291365 TGACATGATTTGATGGCCGAG 58.709 47.619 0.00 0.00 29.16 4.63
5294 5841 2.416680 TGACATGATTTGATGGCCGA 57.583 45.000 0.00 0.00 29.16 5.54
5295 5842 3.551454 GGATTGACATGATTTGATGGCCG 60.551 47.826 0.00 0.00 29.16 6.13
5296 5843 3.385433 TGGATTGACATGATTTGATGGCC 59.615 43.478 0.00 0.00 29.16 5.36
5297 5844 4.659111 TGGATTGACATGATTTGATGGC 57.341 40.909 0.00 0.00 0.00 4.40
5298 5845 5.038683 CGTTGGATTGACATGATTTGATGG 58.961 41.667 0.00 0.00 0.00 3.51
5299 5846 5.740569 GTCGTTGGATTGACATGATTTGATG 59.259 40.000 0.00 0.00 35.20 3.07
5300 5847 5.163622 GGTCGTTGGATTGACATGATTTGAT 60.164 40.000 0.00 0.00 36.83 2.57
5301 5848 4.155826 GGTCGTTGGATTGACATGATTTGA 59.844 41.667 0.00 0.00 36.83 2.69
5302 5849 4.156556 AGGTCGTTGGATTGACATGATTTG 59.843 41.667 0.00 0.00 36.83 2.32
5303 5850 4.335416 AGGTCGTTGGATTGACATGATTT 58.665 39.130 0.00 0.00 36.83 2.17
5304 5851 3.955471 AGGTCGTTGGATTGACATGATT 58.045 40.909 0.00 0.00 36.83 2.57
5305 5852 3.634397 AGGTCGTTGGATTGACATGAT 57.366 42.857 0.00 0.00 36.83 2.45
5306 5853 3.767131 TCTAGGTCGTTGGATTGACATGA 59.233 43.478 0.00 0.00 36.83 3.07
5307 5854 3.865745 GTCTAGGTCGTTGGATTGACATG 59.134 47.826 0.00 0.00 36.83 3.21
5308 5855 3.769844 AGTCTAGGTCGTTGGATTGACAT 59.230 43.478 0.00 0.00 36.83 3.06
5309 5856 3.056821 CAGTCTAGGTCGTTGGATTGACA 60.057 47.826 0.00 0.00 36.83 3.58
5310 5857 3.512680 CAGTCTAGGTCGTTGGATTGAC 58.487 50.000 0.00 0.00 0.00 3.18
5311 5858 2.094182 GCAGTCTAGGTCGTTGGATTGA 60.094 50.000 0.00 0.00 0.00 2.57
5312 5859 2.093973 AGCAGTCTAGGTCGTTGGATTG 60.094 50.000 0.00 0.00 0.00 2.67
5313 5860 2.180276 AGCAGTCTAGGTCGTTGGATT 58.820 47.619 0.00 0.00 0.00 3.01
5314 5861 1.853963 AGCAGTCTAGGTCGTTGGAT 58.146 50.000 0.00 0.00 0.00 3.41
5315 5862 1.544691 GAAGCAGTCTAGGTCGTTGGA 59.455 52.381 0.00 0.00 0.00 3.53
5316 5863 1.272490 TGAAGCAGTCTAGGTCGTTGG 59.728 52.381 0.00 0.00 0.00 3.77
5317 5864 2.724977 TGAAGCAGTCTAGGTCGTTG 57.275 50.000 0.00 0.00 0.00 4.10
5318 5865 3.006967 ACATTGAAGCAGTCTAGGTCGTT 59.993 43.478 0.00 0.00 0.00 3.85
5319 5866 2.563179 ACATTGAAGCAGTCTAGGTCGT 59.437 45.455 0.00 0.00 0.00 4.34
5320 5867 3.182967 GACATTGAAGCAGTCTAGGTCG 58.817 50.000 0.00 0.00 34.13 4.79
5321 5868 3.119459 TCGACATTGAAGCAGTCTAGGTC 60.119 47.826 6.60 6.60 38.76 3.85
5322 5869 2.826128 TCGACATTGAAGCAGTCTAGGT 59.174 45.455 0.00 0.00 0.00 3.08
5323 5870 3.443037 CTCGACATTGAAGCAGTCTAGG 58.557 50.000 0.00 0.00 0.00 3.02
5324 5871 2.857152 GCTCGACATTGAAGCAGTCTAG 59.143 50.000 0.00 0.00 0.00 2.43
5325 5872 2.732282 CGCTCGACATTGAAGCAGTCTA 60.732 50.000 9.76 0.00 0.00 2.59
5326 5873 1.719600 GCTCGACATTGAAGCAGTCT 58.280 50.000 0.00 0.00 0.00 3.24
5327 5874 0.368227 CGCTCGACATTGAAGCAGTC 59.632 55.000 9.76 0.00 0.00 3.51
5328 5875 1.630244 GCGCTCGACATTGAAGCAGT 61.630 55.000 0.00 0.00 0.00 4.40
5329 5876 1.059994 GCGCTCGACATTGAAGCAG 59.940 57.895 0.00 5.34 0.00 4.24
5330 5877 1.354337 GAGCGCTCGACATTGAAGCA 61.354 55.000 23.61 0.00 0.00 3.91
5331 5878 1.346538 GAGCGCTCGACATTGAAGC 59.653 57.895 23.61 0.00 0.00 3.86
5332 5879 1.070821 TTGAGCGCTCGACATTGAAG 58.929 50.000 30.75 0.00 0.00 3.02
5333 5880 0.790207 GTTGAGCGCTCGACATTGAA 59.210 50.000 40.41 22.88 42.27 2.69
5334 5881 0.319469 TGTTGAGCGCTCGACATTGA 60.319 50.000 42.95 27.81 46.09 2.57
5335 5882 2.153039 TGTTGAGCGCTCGACATTG 58.847 52.632 42.95 0.00 46.09 2.82
5336 5883 4.673403 TGTTGAGCGCTCGACATT 57.327 50.000 42.95 9.77 46.09 2.71
5339 5886 1.818221 AAACGTGTTGAGCGCTCGAC 61.818 55.000 39.44 39.44 42.86 4.20
5340 5887 0.318022 TAAACGTGTTGAGCGCTCGA 60.318 50.000 30.75 27.40 0.00 4.04
5341 5888 0.091344 CTAAACGTGTTGAGCGCTCG 59.909 55.000 30.75 21.89 0.00 5.03
5342 5889 1.136611 CACTAAACGTGTTGAGCGCTC 60.137 52.381 30.42 30.42 38.84 5.03
5343 5890 0.859232 CACTAAACGTGTTGAGCGCT 59.141 50.000 11.27 11.27 38.84 5.92
5344 5891 3.345087 CACTAAACGTGTTGAGCGC 57.655 52.632 0.00 0.00 38.84 5.92
5353 5900 6.366315 TGAAATTAACTGCACACTAAACGT 57.634 33.333 0.00 0.00 0.00 3.99
5354 5901 8.012809 TGTATGAAATTAACTGCACACTAAACG 58.987 33.333 0.00 0.00 0.00 3.60
5355 5902 9.672086 TTGTATGAAATTAACTGCACACTAAAC 57.328 29.630 0.00 0.00 0.00 2.01
5359 5906 9.762933 ATTTTTGTATGAAATTAACTGCACACT 57.237 25.926 0.00 0.00 0.00 3.55
5444 5991 9.515020 CAATGCACGTTAATTTTGGAAGTATAT 57.485 29.630 0.00 0.00 0.00 0.86
5445 5992 7.486551 GCAATGCACGTTAATTTTGGAAGTATA 59.513 33.333 0.00 0.00 0.00 1.47
5446 5993 6.310224 GCAATGCACGTTAATTTTGGAAGTAT 59.690 34.615 0.00 0.00 0.00 2.12
5447 5994 5.631512 GCAATGCACGTTAATTTTGGAAGTA 59.368 36.000 0.00 0.00 0.00 2.24
5448 5995 4.447389 GCAATGCACGTTAATTTTGGAAGT 59.553 37.500 0.00 0.00 0.00 3.01
5449 5996 4.447054 TGCAATGCACGTTAATTTTGGAAG 59.553 37.500 2.72 0.00 31.71 3.46
5450 5997 4.371786 TGCAATGCACGTTAATTTTGGAA 58.628 34.783 2.72 0.00 31.71 3.53
5451 5998 3.982475 TGCAATGCACGTTAATTTTGGA 58.018 36.364 2.72 0.00 31.71 3.53
5470 6017 1.148310 ACTAGTCAATGTGCACGTGC 58.852 50.000 33.11 33.11 42.50 5.34
5471 6018 4.234574 TCTTACTAGTCAATGTGCACGTG 58.765 43.478 13.39 12.28 0.00 4.49
5472 6019 4.514781 TCTTACTAGTCAATGTGCACGT 57.485 40.909 13.13 9.52 0.00 4.49
5473 6020 5.161358 TCTTCTTACTAGTCAATGTGCACG 58.839 41.667 13.13 0.00 0.00 5.34
5474 6021 7.042051 TGTTTCTTCTTACTAGTCAATGTGCAC 60.042 37.037 10.75 10.75 0.00 4.57
5475 6022 6.989759 TGTTTCTTCTTACTAGTCAATGTGCA 59.010 34.615 0.00 0.00 0.00 4.57
5476 6023 7.421530 TGTTTCTTCTTACTAGTCAATGTGC 57.578 36.000 0.00 0.00 0.00 4.57
5477 6024 9.208022 TCATGTTTCTTCTTACTAGTCAATGTG 57.792 33.333 0.00 0.00 0.00 3.21
5478 6025 9.429359 CTCATGTTTCTTCTTACTAGTCAATGT 57.571 33.333 0.00 0.00 0.00 2.71
5479 6026 9.645059 TCTCATGTTTCTTCTTACTAGTCAATG 57.355 33.333 0.00 0.00 0.00 2.82
5480 6027 9.868277 CTCTCATGTTTCTTCTTACTAGTCAAT 57.132 33.333 0.00 0.00 0.00 2.57
5481 6028 9.078990 TCTCTCATGTTTCTTCTTACTAGTCAA 57.921 33.333 0.00 0.00 0.00 3.18
5482 6029 8.637196 TCTCTCATGTTTCTTCTTACTAGTCA 57.363 34.615 0.00 0.00 0.00 3.41
5483 6030 9.567848 CTTCTCTCATGTTTCTTCTTACTAGTC 57.432 37.037 0.00 0.00 0.00 2.59
5484 6031 9.303116 TCTTCTCTCATGTTTCTTCTTACTAGT 57.697 33.333 0.00 0.00 0.00 2.57
5487 6034 8.592809 ACATCTTCTCTCATGTTTCTTCTTACT 58.407 33.333 0.00 0.00 28.27 2.24
5488 6035 8.770438 ACATCTTCTCTCATGTTTCTTCTTAC 57.230 34.615 0.00 0.00 28.27 2.34
5489 6036 9.212641 CAACATCTTCTCTCATGTTTCTTCTTA 57.787 33.333 0.00 0.00 40.52 2.10
5490 6037 7.174599 CCAACATCTTCTCTCATGTTTCTTCTT 59.825 37.037 0.00 0.00 40.52 2.52
5491 6038 6.654161 CCAACATCTTCTCTCATGTTTCTTCT 59.346 38.462 0.00 0.00 40.52 2.85
5492 6039 6.128063 CCCAACATCTTCTCTCATGTTTCTTC 60.128 42.308 0.00 0.00 40.52 2.87
5512 6059 4.670896 AATAATATTGCACCAGCCCAAC 57.329 40.909 0.00 0.00 41.13 3.77
5554 6101 3.991773 TCAATCTTTTCATTTGCAGCTGC 59.008 39.130 31.89 31.89 42.50 5.25
5555 6102 6.100004 AGATCAATCTTTTCATTTGCAGCTG 58.900 36.000 10.11 10.11 31.97 4.24
5556 6103 6.282199 AGATCAATCTTTTCATTTGCAGCT 57.718 33.333 0.00 0.00 31.97 4.24
5557 6104 6.963049 AAGATCAATCTTTTCATTTGCAGC 57.037 33.333 0.00 0.00 44.28 5.25
5587 6297 1.663702 CCTTCGCCGTGAACGAGTT 60.664 57.895 4.03 0.00 41.18 3.01
5592 6302 2.251642 AACTGCCTTCGCCGTGAAC 61.252 57.895 0.00 0.00 32.16 3.18
5602 6312 2.011617 AACCTCCCTGCAACTGCCTT 62.012 55.000 0.00 0.00 41.18 4.35
5624 6334 4.273148 ACTGTACACCTCAGGTTCATTC 57.727 45.455 0.00 0.00 37.25 2.67
5636 6346 0.974383 ACTGCACCCTACTGTACACC 59.026 55.000 0.00 0.00 0.00 4.16
5637 6347 3.947910 TTACTGCACCCTACTGTACAC 57.052 47.619 0.00 0.00 0.00 2.90
5638 6348 4.959560 TTTTACTGCACCCTACTGTACA 57.040 40.909 0.00 0.00 0.00 2.90
5639 6349 4.565564 CGATTTTACTGCACCCTACTGTAC 59.434 45.833 0.00 0.00 0.00 2.90
5646 6356 1.628846 ACCTCGATTTTACTGCACCCT 59.371 47.619 0.00 0.00 0.00 4.34
5652 6362 9.708222 CTATCAAAATTGACCTCGATTTTACTG 57.292 33.333 11.37 3.52 44.10 2.74
5660 6370 6.234920 TCCAAACTATCAAAATTGACCTCGA 58.765 36.000 0.00 0.00 40.49 4.04
5661 6371 6.403636 CCTCCAAACTATCAAAATTGACCTCG 60.404 42.308 0.00 0.00 40.49 4.63
5663 6373 6.314917 ACCTCCAAACTATCAAAATTGACCT 58.685 36.000 0.00 0.00 40.49 3.85
5664 6374 6.590234 ACCTCCAAACTATCAAAATTGACC 57.410 37.500 0.00 0.00 40.49 4.02
5666 6376 7.595819 ACAACCTCCAAACTATCAAAATTGA 57.404 32.000 0.00 0.00 42.14 2.57
5667 6377 7.307337 GCAACAACCTCCAAACTATCAAAATTG 60.307 37.037 0.00 0.00 0.00 2.32
5668 6378 6.705825 GCAACAACCTCCAAACTATCAAAATT 59.294 34.615 0.00 0.00 0.00 1.82
5680 6392 1.832167 GGGCAGCAACAACCTCCAA 60.832 57.895 0.00 0.00 0.00 3.53
5698 6410 7.962918 CACTGAAGAAAAATAACCACCGATTAG 59.037 37.037 0.00 0.00 0.00 1.73
5705 6417 5.453567 AGCCACTGAAGAAAAATAACCAC 57.546 39.130 0.00 0.00 0.00 4.16
5712 6424 3.290710 AGCAGAAGCCACTGAAGAAAAA 58.709 40.909 11.19 0.00 43.56 1.94
5714 6426 2.645838 AGCAGAAGCCACTGAAGAAA 57.354 45.000 11.19 0.00 43.56 2.52
5722 6434 4.034975 GTCATCAAAGATAGCAGAAGCCAC 59.965 45.833 0.00 0.00 43.56 5.01
5724 6436 4.450053 AGTCATCAAAGATAGCAGAAGCC 58.550 43.478 0.00 0.00 43.56 4.35
5748 6460 9.262472 CGAGTAAAGTCAAGCAACATAAAATAC 57.738 33.333 0.00 0.00 0.00 1.89
5751 6463 7.129622 CACGAGTAAAGTCAAGCAACATAAAA 58.870 34.615 0.00 0.00 0.00 1.52
5756 6468 2.286833 GCACGAGTAAAGTCAAGCAACA 59.713 45.455 0.00 0.00 0.00 3.33
5757 6469 2.349532 GGCACGAGTAAAGTCAAGCAAC 60.350 50.000 0.00 0.00 0.00 4.17
5758 6470 1.871039 GGCACGAGTAAAGTCAAGCAA 59.129 47.619 0.00 0.00 0.00 3.91
5774 6487 5.368145 TGTTACAATGATCCTAGATGGCAC 58.632 41.667 0.00 0.00 35.26 5.01
5777 6490 7.295322 TCTCTGTTACAATGATCCTAGATGG 57.705 40.000 0.00 0.00 37.10 3.51
5784 6497 8.950210 TGATTTCTTTCTCTGTTACAATGATCC 58.050 33.333 0.00 0.00 0.00 3.36
5800 6513 9.604626 CAGTTCATGAGTTACTTGATTTCTTTC 57.395 33.333 0.00 0.00 33.71 2.62
5801 6514 8.571336 CCAGTTCATGAGTTACTTGATTTCTTT 58.429 33.333 0.00 0.00 33.71 2.52
5802 6515 7.308830 GCCAGTTCATGAGTTACTTGATTTCTT 60.309 37.037 0.00 0.00 33.71 2.52
5803 6516 6.150140 GCCAGTTCATGAGTTACTTGATTTCT 59.850 38.462 0.00 0.00 33.71 2.52
5804 6517 6.150140 AGCCAGTTCATGAGTTACTTGATTTC 59.850 38.462 0.00 0.00 33.71 2.17
5805 6518 6.006449 AGCCAGTTCATGAGTTACTTGATTT 58.994 36.000 0.00 0.00 33.71 2.17
5806 6519 5.564550 AGCCAGTTCATGAGTTACTTGATT 58.435 37.500 0.00 0.00 33.71 2.57
5807 6520 5.171339 AGCCAGTTCATGAGTTACTTGAT 57.829 39.130 0.00 0.00 33.71 2.57
5808 6521 4.623932 AGCCAGTTCATGAGTTACTTGA 57.376 40.909 0.00 0.00 0.00 3.02
5809 6522 5.724328 TCTAGCCAGTTCATGAGTTACTTG 58.276 41.667 0.00 0.00 0.00 3.16
5810 6523 6.360370 TTCTAGCCAGTTCATGAGTTACTT 57.640 37.500 0.00 0.00 0.00 2.24
5811 6524 6.552445 ATTCTAGCCAGTTCATGAGTTACT 57.448 37.500 0.00 0.00 0.00 2.24
5812 6525 6.422400 GCTATTCTAGCCAGTTCATGAGTTAC 59.578 42.308 0.00 0.00 45.95 2.50
5813 6526 6.516718 GCTATTCTAGCCAGTTCATGAGTTA 58.483 40.000 0.00 0.00 45.95 2.24
5814 6527 5.363939 GCTATTCTAGCCAGTTCATGAGTT 58.636 41.667 0.00 0.00 45.95 3.01
5815 6528 4.954875 GCTATTCTAGCCAGTTCATGAGT 58.045 43.478 0.00 0.00 45.95 3.41
5830 6543 9.541143 GAGCTACTTGATTTCTTTAGCTATTCT 57.459 33.333 0.00 0.00 44.33 2.40
5831 6544 9.319143 TGAGCTACTTGATTTCTTTAGCTATTC 57.681 33.333 0.00 0.00 44.33 1.75
5832 6545 9.844257 ATGAGCTACTTGATTTCTTTAGCTATT 57.156 29.630 0.00 0.00 44.33 1.73
5833 6546 9.270640 CATGAGCTACTTGATTTCTTTAGCTAT 57.729 33.333 0.00 0.00 44.33 2.97
5834 6547 8.478066 TCATGAGCTACTTGATTTCTTTAGCTA 58.522 33.333 1.53 0.00 44.33 3.32
5835 6548 7.334090 TCATGAGCTACTTGATTTCTTTAGCT 58.666 34.615 1.12 1.12 46.42 3.32
5836 6549 7.545362 TCATGAGCTACTTGATTTCTTTAGC 57.455 36.000 0.00 0.00 36.25 3.09
5837 6550 9.160496 AGTTCATGAGCTACTTGATTTCTTTAG 57.840 33.333 10.73 0.00 33.71 1.85
5838 6551 8.939929 CAGTTCATGAGCTACTTGATTTCTTTA 58.060 33.333 12.11 0.00 33.71 1.85
5842 6555 5.448360 GCCAGTTCATGAGCTACTTGATTTC 60.448 44.000 12.11 0.00 33.71 2.17
5870 6583 8.916628 ATTTGGAGGAGAAAAATCTAGCTATC 57.083 34.615 0.00 0.00 0.00 2.08
5898 6611 3.322466 AGGGCGGTGTCCTTCCAG 61.322 66.667 0.00 0.00 31.15 3.86
5910 6623 1.676006 GGAATAACCACATTCAGGGCG 59.324 52.381 0.00 0.00 36.77 6.13
5923 6636 9.654663 ACCATCGCTTATAATAAGAGGAATAAC 57.345 33.333 0.00 0.00 0.00 1.89
5938 6651 5.417894 TCATAAGGATCGTACCATCGCTTAT 59.582 40.000 13.41 13.41 32.30 1.73
5948 6661 9.706691 TCCTTTATTCATTCATAAGGATCGTAC 57.293 33.333 0.00 0.00 0.00 3.67
5960 6673 9.690913 ACAATCATCTTCTCCTTTATTCATTCA 57.309 29.630 0.00 0.00 0.00 2.57
6012 6725 9.995003 TTGCAATGTGAAAATACCTCTATTTTT 57.005 25.926 0.00 0.00 40.97 1.94
6017 6730 6.208402 TGCTTTGCAATGTGAAAATACCTCTA 59.792 34.615 13.29 0.00 34.76 2.43
6018 6731 5.010922 TGCTTTGCAATGTGAAAATACCTCT 59.989 36.000 13.29 0.00 34.76 3.69
6019 6732 5.229423 TGCTTTGCAATGTGAAAATACCTC 58.771 37.500 13.29 0.00 34.76 3.85
6020 6733 5.212532 TGCTTTGCAATGTGAAAATACCT 57.787 34.783 13.29 0.00 34.76 3.08
6021 6734 5.921004 TTGCTTTGCAATGTGAAAATACC 57.079 34.783 13.29 0.00 43.99 2.73
6030 6743 8.058276 AGTAAAGACTTTGTTGCTTTGCAATGT 61.058 33.333 10.80 5.79 41.20 2.71
6031 6744 6.256321 AGTAAAGACTTTGTTGCTTTGCAATG 59.744 34.615 10.80 3.50 41.20 2.82
6032 6745 6.340522 AGTAAAGACTTTGTTGCTTTGCAAT 58.659 32.000 10.80 0.00 41.20 3.56
6033 6746 5.719173 AGTAAAGACTTTGTTGCTTTGCAA 58.281 33.333 10.80 0.00 38.38 4.08
6034 6747 5.323371 AGTAAAGACTTTGTTGCTTTGCA 57.677 34.783 10.80 0.00 36.91 4.08
6035 6748 6.036470 AGAAGTAAAGACTTTGTTGCTTTGC 58.964 36.000 10.80 0.00 46.23 3.68
6036 6749 7.970614 AGAAGAAGTAAAGACTTTGTTGCTTTG 59.029 33.333 10.80 0.00 46.23 2.77
6037 6750 8.056407 AGAAGAAGTAAAGACTTTGTTGCTTT 57.944 30.769 10.80 0.00 46.23 3.51
6038 6751 7.336931 TGAGAAGAAGTAAAGACTTTGTTGCTT 59.663 33.333 10.80 8.27 46.23 3.91
6039 6752 6.823689 TGAGAAGAAGTAAAGACTTTGTTGCT 59.176 34.615 10.80 0.00 46.23 3.91
6040 6753 7.016361 TGAGAAGAAGTAAAGACTTTGTTGC 57.984 36.000 10.80 0.00 46.23 4.17
6041 6754 8.883731 TCTTGAGAAGAAGTAAAGACTTTGTTG 58.116 33.333 10.80 0.00 46.23 3.33
6042 6755 9.449719 TTCTTGAGAAGAAGTAAAGACTTTGTT 57.550 29.630 10.80 4.10 46.23 2.83
6043 6756 9.449719 TTTCTTGAGAAGAAGTAAAGACTTTGT 57.550 29.630 10.80 0.00 46.23 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.