Multiple sequence alignment - TraesCS5D01G108600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G108600 chr5D 100.000 3986 0 0 1 3986 122209970 122205985 0.000000e+00 7361
1 TraesCS5D01G108600 chr5B 97.614 3311 55 5 675 3985 134928733 134925447 0.000000e+00 5655
2 TraesCS5D01G108600 chr5B 90.476 252 23 1 1 251 134967974 134967723 8.260000e-87 331
3 TraesCS5D01G108600 chr5B 89.754 244 22 3 286 528 134967715 134967474 3.870000e-80 309
4 TraesCS5D01G108600 chr5A 93.465 2739 107 36 999 3696 134097572 134094865 0.000000e+00 4000
5 TraesCS5D01G108600 chr5A 92.912 522 30 6 1 518 134099545 134099027 0.000000e+00 752
6 TraesCS5D01G108600 chr5A 97.244 254 6 1 715 968 134097825 134097573 2.850000e-116 429
7 TraesCS5D01G108600 chr2B 88.020 793 75 7 1564 2355 503438164 503437391 0.000000e+00 920
8 TraesCS5D01G108600 chr7B 85.870 828 97 11 1540 2363 591456962 591457773 0.000000e+00 863
9 TraesCS5D01G108600 chr1B 84.841 818 75 18 1565 2363 594115551 594114764 0.000000e+00 778


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G108600 chr5D 122205985 122209970 3985 True 7361 7361 100.000000 1 3986 1 chr5D.!!$R1 3985
1 TraesCS5D01G108600 chr5B 134925447 134928733 3286 True 5655 5655 97.614000 675 3985 1 chr5B.!!$R1 3310
2 TraesCS5D01G108600 chr5B 134967474 134967974 500 True 320 331 90.115000 1 528 2 chr5B.!!$R2 527
3 TraesCS5D01G108600 chr5A 134094865 134099545 4680 True 1727 4000 94.540333 1 3696 3 chr5A.!!$R1 3695
4 TraesCS5D01G108600 chr2B 503437391 503438164 773 True 920 920 88.020000 1564 2355 1 chr2B.!!$R1 791
5 TraesCS5D01G108600 chr7B 591456962 591457773 811 False 863 863 85.870000 1540 2363 1 chr7B.!!$F1 823
6 TraesCS5D01G108600 chr1B 594114764 594115551 787 True 778 778 84.841000 1565 2363 1 chr1B.!!$R1 798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 894 0.107017 CGAGTTGATGGGGGAGCAAT 60.107 55.0 0.0 0.0 31.22 3.56 F
671 898 0.394216 TTGATGGGGGAGCAATCGTG 60.394 55.0 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2430 3539 2.670414 CTCTAACTTTGCTGCCTTCTCG 59.330 50.0 0.00 0.0 0.00 4.04 R
3079 4190 0.681733 ACTCGAGAGAAAGCAAGGCA 59.318 50.0 21.68 0.0 41.32 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 5.758296 ACTTGTATGGTAACTTCATATGCCG 59.242 40.000 0.00 0.00 37.61 5.69
118 120 5.761003 TCATATGCCGCAAGAACATTATTG 58.239 37.500 0.00 0.00 43.02 1.90
156 158 3.686726 AGCACAAAAGCTCTCCGAATTAG 59.313 43.478 0.00 0.00 42.18 1.73
168 170 7.672239 AGCTCTCCGAATTAGATCTATTACCTT 59.328 37.037 2.58 0.00 0.00 3.50
229 231 9.562408 TTTGAGATAACTAACCACATTACACAA 57.438 29.630 0.00 0.00 0.00 3.33
232 234 7.165485 AGATAACTAACCACATTACACAAGCA 58.835 34.615 0.00 0.00 0.00 3.91
254 256 4.399303 CAGATGGGTCCAAAATGAGTTACC 59.601 45.833 0.00 0.00 0.00 2.85
265 267 6.467677 CAAAATGAGTTACCTCTTCTCTGGA 58.532 40.000 0.00 0.00 38.61 3.86
280 282 7.852263 TCTTCTCTGGAGAATTTACTTTAGGG 58.148 38.462 12.61 0.00 45.40 3.53
284 286 5.093849 TGGAGAATTTACTTTAGGGACCG 57.906 43.478 0.00 0.00 0.00 4.79
315 317 8.812513 ATTGTAGTTTCATTCCATCAAGATGA 57.187 30.769 11.48 0.00 41.20 2.92
388 390 9.396022 CTTTATATCCCCAATATCAAATAGCGT 57.604 33.333 0.00 0.00 32.64 5.07
401 403 7.639162 ATCAAATAGCGTATTTAGAACCTCG 57.361 36.000 3.68 0.00 36.29 4.63
406 408 3.946558 AGCGTATTTAGAACCTCGTCTCT 59.053 43.478 0.00 0.00 0.00 3.10
450 452 4.638865 AGTTATTCATTAACCCGCCTTCAC 59.361 41.667 0.00 0.00 41.01 3.18
471 473 4.021981 CACGCATGAGATAATACCTCCTGA 60.022 45.833 2.50 0.00 30.92 3.86
477 479 5.970289 TGAGATAATACCTCCTGATCTGGT 58.030 41.667 17.33 10.97 37.83 4.00
482 484 5.779241 AATACCTCCTGATCTGGTTGAAA 57.221 39.130 17.33 2.96 35.48 2.69
554 780 3.165071 CCTTACCTTGCTTCCAAACCAT 58.835 45.455 0.00 0.00 0.00 3.55
571 798 2.352371 CCATTGTATGGGAGGGGAGAT 58.648 52.381 0.00 0.00 46.86 2.75
576 803 6.126652 CCATTGTATGGGAGGGGAGATATTAG 60.127 46.154 0.00 0.00 46.86 1.73
579 806 2.907892 TGGGAGGGGAGATATTAGCAG 58.092 52.381 0.00 0.00 0.00 4.24
592 819 7.923344 GGAGATATTAGCAGCAATCGTGTATAT 59.077 37.037 0.00 0.00 0.00 0.86
593 820 8.864069 AGATATTAGCAGCAATCGTGTATATC 57.136 34.615 0.00 0.00 0.00 1.63
594 821 7.923344 AGATATTAGCAGCAATCGTGTATATCC 59.077 37.037 0.00 0.00 0.00 2.59
596 823 4.342862 AGCAGCAATCGTGTATATCCTT 57.657 40.909 0.00 0.00 0.00 3.36
597 824 4.708177 AGCAGCAATCGTGTATATCCTTT 58.292 39.130 0.00 0.00 0.00 3.11
598 825 5.126067 AGCAGCAATCGTGTATATCCTTTT 58.874 37.500 0.00 0.00 0.00 2.27
599 826 5.590259 AGCAGCAATCGTGTATATCCTTTTT 59.410 36.000 0.00 0.00 0.00 1.94
661 888 2.489938 TTTCTTCGAGTTGATGGGGG 57.510 50.000 0.00 0.00 0.00 5.40
662 889 1.651737 TTCTTCGAGTTGATGGGGGA 58.348 50.000 0.00 0.00 0.00 4.81
663 890 1.195115 TCTTCGAGTTGATGGGGGAG 58.805 55.000 0.00 0.00 0.00 4.30
664 891 0.462759 CTTCGAGTTGATGGGGGAGC 60.463 60.000 0.00 0.00 0.00 4.70
665 892 1.198094 TTCGAGTTGATGGGGGAGCA 61.198 55.000 0.00 0.00 0.00 4.26
666 893 1.198094 TCGAGTTGATGGGGGAGCAA 61.198 55.000 0.00 0.00 0.00 3.91
667 894 0.107017 CGAGTTGATGGGGGAGCAAT 60.107 55.000 0.00 0.00 31.22 3.56
668 895 1.685148 GAGTTGATGGGGGAGCAATC 58.315 55.000 0.00 0.00 31.22 2.67
669 896 0.107017 AGTTGATGGGGGAGCAATCG 60.107 55.000 0.00 0.00 31.22 3.34
670 897 0.394352 GTTGATGGGGGAGCAATCGT 60.394 55.000 0.00 0.00 31.22 3.73
671 898 0.394216 TTGATGGGGGAGCAATCGTG 60.394 55.000 0.00 0.00 0.00 4.35
672 899 1.224592 GATGGGGGAGCAATCGTGT 59.775 57.895 0.00 0.00 0.00 4.49
673 900 0.468226 GATGGGGGAGCAATCGTGTA 59.532 55.000 0.00 0.00 0.00 2.90
691 918 5.185442 TCGTGTATACCATCAACCACAAGTA 59.815 40.000 0.00 0.00 0.00 2.24
692 919 6.046593 CGTGTATACCATCAACCACAAGTAT 58.953 40.000 0.00 0.00 0.00 2.12
713 940 1.260544 AAACCCAAAGAGGCAGCATC 58.739 50.000 0.00 0.00 35.39 3.91
764 1850 1.459158 TGCCAAGGCCCAACAACAT 60.459 52.632 8.89 0.00 41.09 2.71
944 2030 4.463050 TTGGGAATTGTTCTTGTAGGGT 57.537 40.909 0.00 0.00 0.00 4.34
966 2052 0.633921 CTTGAGGAGGAGGAGGAGGA 59.366 60.000 0.00 0.00 0.00 3.71
967 2053 0.633921 TTGAGGAGGAGGAGGAGGAG 59.366 60.000 0.00 0.00 0.00 3.69
968 2054 1.292941 TGAGGAGGAGGAGGAGGAGG 61.293 65.000 0.00 0.00 0.00 4.30
969 2055 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
970 2056 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
971 2057 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
972 2058 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
973 2059 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
974 2060 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
975 2061 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
976 2062 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
977 2063 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
978 2064 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
979 2065 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
980 2066 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
981 2067 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
982 2068 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
983 2069 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1061 2147 4.304413 TCGGACCGTGGGGAAGGA 62.304 66.667 14.79 0.00 36.97 3.36
1210 2296 4.521062 CGAGGAAGAGGCTGCCGG 62.521 72.222 13.96 0.00 33.44 6.13
1293 2379 0.813210 GAGGGTACGACGACGAGGAT 60.813 60.000 15.32 0.00 42.66 3.24
1672 2759 1.059584 TCTGGTTCCCAAGAGTGGCA 61.060 55.000 0.00 0.00 44.46 4.92
2207 3316 4.503991 GGAAGTGCTGGAGAAGAAAGAAGA 60.504 45.833 0.00 0.00 0.00 2.87
2430 3539 2.813754 TGCTCAGCCAATGTCAACTAAC 59.186 45.455 0.00 0.00 0.00 2.34
3183 4294 5.329035 AGTGTTATTGACATTTCATGGCC 57.671 39.130 0.00 0.00 41.10 5.36
3895 5051 0.527565 CTGGGTAACATGGCAGTTGC 59.472 55.000 11.08 9.79 38.48 4.17
3916 5072 3.304659 GCGAACAGATTCAAACCACATGT 60.305 43.478 0.00 0.00 34.14 3.21
3922 5078 5.771666 ACAGATTCAAACCACATGTCATTCT 59.228 36.000 0.00 0.00 0.00 2.40
3982 5138 1.001068 TGGTTCTGCGTCGTTTATCCA 59.999 47.619 0.00 0.00 0.00 3.41
3985 5141 3.126343 GGTTCTGCGTCGTTTATCCATTT 59.874 43.478 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 106 3.591196 TGCCACCAATAATGTTCTTGC 57.409 42.857 0.00 0.00 0.00 4.01
118 120 1.448013 GCTAGGACGTCTTGCCACC 60.448 63.158 16.46 0.00 38.09 4.61
211 213 5.373222 TCTGCTTGTGTAATGTGGTTAGTT 58.627 37.500 0.00 0.00 0.00 2.24
229 231 2.042162 ACTCATTTTGGACCCATCTGCT 59.958 45.455 0.00 0.00 0.00 4.24
232 234 4.600062 GGTAACTCATTTTGGACCCATCT 58.400 43.478 0.00 0.00 0.00 2.90
265 267 7.008021 TGTTACGGTCCCTAAAGTAAATTCT 57.992 36.000 0.00 0.00 31.88 2.40
280 282 7.019418 GGAATGAAACTACAATTGTTACGGTC 58.981 38.462 17.78 8.87 0.00 4.79
284 286 9.906660 TTGATGGAATGAAACTACAATTGTTAC 57.093 29.630 17.78 0.00 0.00 2.50
311 313 7.172532 TCTGGTTAATTGCGGTGTTATATCATC 59.827 37.037 0.00 0.00 0.00 2.92
315 317 6.995686 TGATCTGGTTAATTGCGGTGTTATAT 59.004 34.615 0.00 0.00 0.00 0.86
389 391 7.982354 CCTTATTCAAGAGACGAGGTTCTAAAT 59.018 37.037 0.00 0.00 33.20 1.40
450 452 4.790765 TCAGGAGGTATTATCTCATGCG 57.209 45.455 12.65 0.00 41.23 4.73
471 473 5.774690 TGCCTATGAAGTTTTTCAACCAGAT 59.225 36.000 0.00 0.00 45.82 2.90
535 760 3.964031 ACAATGGTTTGGAAGCAAGGTAA 59.036 39.130 0.00 0.00 42.83 2.85
554 780 4.783227 GCTAATATCTCCCCTCCCATACAA 59.217 45.833 0.00 0.00 0.00 2.41
571 798 7.170393 AGGATATACACGATTGCTGCTAATA 57.830 36.000 0.00 0.00 0.00 0.98
576 803 5.424121 AAAAGGATATACACGATTGCTGC 57.576 39.130 0.00 0.00 0.00 5.25
640 867 3.153919 CCCCCATCAACTCGAAGAAAAA 58.846 45.455 0.00 0.00 34.09 1.94
641 868 2.373836 TCCCCCATCAACTCGAAGAAAA 59.626 45.455 0.00 0.00 34.09 2.29
642 869 1.982226 TCCCCCATCAACTCGAAGAAA 59.018 47.619 0.00 0.00 34.09 2.52
643 870 1.555075 CTCCCCCATCAACTCGAAGAA 59.445 52.381 0.00 0.00 34.09 2.52
644 871 1.195115 CTCCCCCATCAACTCGAAGA 58.805 55.000 0.00 0.00 0.00 2.87
645 872 0.462759 GCTCCCCCATCAACTCGAAG 60.463 60.000 0.00 0.00 0.00 3.79
646 873 1.198094 TGCTCCCCCATCAACTCGAA 61.198 55.000 0.00 0.00 0.00 3.71
647 874 1.198094 TTGCTCCCCCATCAACTCGA 61.198 55.000 0.00 0.00 0.00 4.04
648 875 0.107017 ATTGCTCCCCCATCAACTCG 60.107 55.000 0.00 0.00 0.00 4.18
649 876 1.685148 GATTGCTCCCCCATCAACTC 58.315 55.000 0.00 0.00 0.00 3.01
650 877 0.107017 CGATTGCTCCCCCATCAACT 60.107 55.000 0.00 0.00 0.00 3.16
651 878 0.394352 ACGATTGCTCCCCCATCAAC 60.394 55.000 0.00 0.00 0.00 3.18
652 879 0.394216 CACGATTGCTCCCCCATCAA 60.394 55.000 0.00 0.00 0.00 2.57
653 880 1.224315 CACGATTGCTCCCCCATCA 59.776 57.895 0.00 0.00 0.00 3.07
654 881 0.468226 TACACGATTGCTCCCCCATC 59.532 55.000 0.00 0.00 0.00 3.51
655 882 1.140312 ATACACGATTGCTCCCCCAT 58.860 50.000 0.00 0.00 0.00 4.00
656 883 1.414919 GTATACACGATTGCTCCCCCA 59.585 52.381 0.00 0.00 0.00 4.96
657 884 1.270678 GGTATACACGATTGCTCCCCC 60.271 57.143 5.01 0.00 0.00 5.40
658 885 1.414919 TGGTATACACGATTGCTCCCC 59.585 52.381 5.01 0.00 0.00 4.81
659 886 2.902705 TGGTATACACGATTGCTCCC 57.097 50.000 5.01 0.00 0.00 4.30
660 887 3.990092 TGATGGTATACACGATTGCTCC 58.010 45.455 5.01 0.00 0.00 4.70
661 888 4.211374 GGTTGATGGTATACACGATTGCTC 59.789 45.833 5.01 0.00 0.00 4.26
662 889 4.127171 GGTTGATGGTATACACGATTGCT 58.873 43.478 5.01 0.00 0.00 3.91
663 890 3.874543 TGGTTGATGGTATACACGATTGC 59.125 43.478 5.01 0.00 0.00 3.56
664 891 4.873259 TGTGGTTGATGGTATACACGATTG 59.127 41.667 5.01 0.00 0.00 2.67
665 892 5.092554 TGTGGTTGATGGTATACACGATT 57.907 39.130 5.01 0.00 0.00 3.34
666 893 4.746535 TGTGGTTGATGGTATACACGAT 57.253 40.909 5.01 0.00 0.00 3.73
667 894 4.020928 ACTTGTGGTTGATGGTATACACGA 60.021 41.667 5.01 0.00 0.00 4.35
668 895 4.250464 ACTTGTGGTTGATGGTATACACG 58.750 43.478 5.01 0.00 0.00 4.49
669 896 8.951787 TTATACTTGTGGTTGATGGTATACAC 57.048 34.615 5.01 0.00 0.00 2.90
670 897 9.961264 TTTTATACTTGTGGTTGATGGTATACA 57.039 29.630 5.01 0.00 0.00 2.29
672 899 9.398538 GGTTTTATACTTGTGGTTGATGGTATA 57.601 33.333 0.00 0.00 0.00 1.47
673 900 7.340999 GGGTTTTATACTTGTGGTTGATGGTAT 59.659 37.037 0.00 0.00 0.00 2.73
691 918 2.888212 TGCTGCCTCTTTGGGTTTTAT 58.112 42.857 0.00 0.00 36.00 1.40
692 919 2.373335 TGCTGCCTCTTTGGGTTTTA 57.627 45.000 0.00 0.00 36.00 1.52
764 1850 2.850568 GGGAAAAGGAGGGGTTCTGATA 59.149 50.000 0.00 0.00 0.00 2.15
944 2030 2.560841 CCTCCTCCTCCTCCTCAAGAAA 60.561 54.545 0.00 0.00 0.00 2.52
966 2052 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
967 2053 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
968 2054 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
969 2055 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
970 2056 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
971 2057 1.152546 GCTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
972 2058 3.024217 GCTCCTCCTCCTCCTCCT 58.976 66.667 0.00 0.00 0.00 3.69
973 2059 2.520741 CGCTCCTCCTCCTCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
974 2060 1.826487 GACGCTCCTCCTCCTCCTC 60.826 68.421 0.00 0.00 0.00 3.71
975 2061 1.943730 ATGACGCTCCTCCTCCTCCT 61.944 60.000 0.00 0.00 0.00 3.69
976 2062 1.456705 ATGACGCTCCTCCTCCTCC 60.457 63.158 0.00 0.00 0.00 4.30
977 2063 1.791103 CGATGACGCTCCTCCTCCTC 61.791 65.000 0.00 0.00 0.00 3.71
978 2064 1.826054 CGATGACGCTCCTCCTCCT 60.826 63.158 0.00 0.00 0.00 3.69
979 2065 2.725008 CGATGACGCTCCTCCTCC 59.275 66.667 0.00 0.00 0.00 4.30
1189 2275 2.960688 GCAGCCTCTTCCTCGGGTT 61.961 63.158 0.00 0.00 0.00 4.11
1293 2379 2.123854 CTCCCCTCGTCATCGGGA 60.124 66.667 0.00 0.00 43.44 5.14
2207 3316 9.640952 ACACATAATTGTAGGCCTTTATAATGT 57.359 29.630 12.58 13.19 33.76 2.71
2228 3337 4.478206 ACAGTAGCTGCTGAATACACAT 57.522 40.909 34.60 9.95 39.62 3.21
2430 3539 2.670414 CTCTAACTTTGCTGCCTTCTCG 59.330 50.000 0.00 0.00 0.00 4.04
3079 4190 0.681733 ACTCGAGAGAAAGCAAGGCA 59.318 50.000 21.68 0.00 41.32 4.75
3711 4867 2.455674 TGTGCCTACAGTGTAAGCTG 57.544 50.000 21.45 3.28 41.92 4.24
3759 4915 5.794894 TCTAAGCTTACCAAACTTCTGAGG 58.205 41.667 0.86 0.00 0.00 3.86
3801 4957 0.674895 CCCTTTCTTGAGGCGTCCAG 60.675 60.000 3.56 2.30 35.37 3.86
3834 4990 2.093606 GCGTCCTAAGTTTAAGCCTCCT 60.094 50.000 0.00 0.00 0.00 3.69
3895 5051 4.024133 TGACATGTGGTTTGAATCTGTTCG 60.024 41.667 1.15 0.00 37.15 3.95
3916 5072 7.862274 ATCTATCATGGTTGAGGTAGAATGA 57.138 36.000 0.00 0.00 34.73 2.57
3947 5103 4.740934 GCAGAACCAGCTTAATCCGATAGT 60.741 45.833 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.