Multiple sequence alignment - TraesCS5D01G108000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G108000 chr5D 100.000 5715 0 0 1 5715 121289934 121295648 0.000000e+00 10554.0
1 TraesCS5D01G108000 chr5D 89.498 1314 77 20 4310 5581 121076206 121074912 0.000000e+00 1605.0
2 TraesCS5D01G108000 chr5D 92.381 105 6 1 2936 3038 278628356 278628252 1.280000e-31 148.0
3 TraesCS5D01G108000 chr5D 95.385 65 2 1 2974 3038 69103463 69103526 1.010000e-17 102.0
4 TraesCS5D01G108000 chr5D 100.000 47 0 0 5608 5654 121074796 121074750 2.840000e-13 87.9
5 TraesCS5D01G108000 chr5A 89.122 2482 146 45 746 3167 132963612 132966029 0.000000e+00 2974.0
6 TraesCS5D01G108000 chr5A 91.307 1415 79 20 3910 5286 132968718 132970126 0.000000e+00 1892.0
7 TraesCS5D01G108000 chr5A 92.224 1106 69 12 4486 5579 132094440 132093340 0.000000e+00 1550.0
8 TraesCS5D01G108000 chr5A 89.270 466 19 3 5277 5715 132970423 132970884 6.470000e-154 555.0
9 TraesCS5D01G108000 chr5A 84.268 553 73 8 3 554 132961238 132961777 1.410000e-145 527.0
10 TraesCS5D01G108000 chr5A 86.275 357 18 13 3186 3522 132966018 132966363 5.440000e-95 359.0
11 TraesCS5D01G108000 chr5A 92.708 96 7 0 3648 3743 132968632 132968727 7.720000e-29 139.0
12 TraesCS5D01G108000 chr5A 86.325 117 6 3 5609 5715 132093179 132093063 1.010000e-22 119.0
13 TraesCS5D01G108000 chr5B 90.990 1354 67 16 3910 5215 134540476 134541822 0.000000e+00 1773.0
14 TraesCS5D01G108000 chr5B 90.785 1248 75 15 1894 3135 134535501 134536714 0.000000e+00 1631.0
15 TraesCS5D01G108000 chr5B 85.904 979 70 33 775 1730 134534562 134535495 0.000000e+00 981.0
16 TraesCS5D01G108000 chr5B 88.011 709 58 14 4486 5179 134128142 134127446 0.000000e+00 813.0
17 TraesCS5D01G108000 chr5B 84.625 813 95 16 2 791 134533803 134534608 0.000000e+00 782.0
18 TraesCS5D01G108000 chr5B 92.736 413 25 3 5174 5581 134122255 134121843 4.930000e-165 592.0
19 TraesCS5D01G108000 chr5B 88.846 260 26 2 5322 5578 134541822 134542081 3.320000e-82 316.0
20 TraesCS5D01G108000 chr5B 89.080 174 8 5 3477 3650 134539482 134539644 7.510000e-49 206.0
21 TraesCS5D01G108000 chr5B 91.057 123 7 1 4310 4432 134128411 134128293 4.580000e-36 163.0
22 TraesCS5D01G108000 chr5B 94.565 92 5 0 3652 3743 134540394 134540485 5.970000e-30 143.0
23 TraesCS5D01G108000 chr5B 88.034 117 4 1 5609 5715 134121689 134121573 4.650000e-26 130.0
24 TraesCS5D01G108000 chr5B 84.733 131 18 1 2910 3038 318171670 318171800 4.650000e-26 130.0
25 TraesCS5D01G108000 chr5B 95.652 46 1 1 4439 4483 134128261 134128216 7.940000e-09 73.1
26 TraesCS5D01G108000 chr7B 80.576 417 67 9 1 413 617549732 617550138 5.560000e-80 309.0
27 TraesCS5D01G108000 chr7D 94.857 175 3 3 3744 3913 632652903 632653076 9.440000e-68 268.0
28 TraesCS5D01G108000 chr7D 90.798 163 8 4 3755 3911 610417299 610417460 1.610000e-50 211.0
29 TraesCS5D01G108000 chr2A 94.220 173 4 2 3748 3914 44184533 44184361 5.680000e-65 259.0
30 TraesCS5D01G108000 chr6D 95.062 162 2 3 3755 3911 18932722 18932562 3.420000e-62 250.0
31 TraesCS5D01G108000 chr6D 88.690 168 12 3 3748 3911 463089 463253 1.260000e-46 198.0
32 TraesCS5D01G108000 chr2D 95.000 160 2 3 3759 3913 531685441 531685283 4.420000e-61 246.0
33 TraesCS5D01G108000 chr2D 91.772 158 6 4 3764 3915 174691099 174691255 4.490000e-51 213.0
34 TraesCS5D01G108000 chr4A 88.571 175 12 5 3744 3912 715240137 715240309 7.510000e-49 206.0
35 TraesCS5D01G108000 chr3A 90.184 163 8 5 3755 3911 701862602 701862442 7.510000e-49 206.0
36 TraesCS5D01G108000 chr1D 84.874 119 14 1 4310 4428 84567006 84566892 3.620000e-22 117.0
37 TraesCS5D01G108000 chr1D 81.159 138 21 4 2910 3043 283621859 283621995 7.830000e-19 106.0
38 TraesCS5D01G108000 chr1B 84.685 111 14 2 2935 3043 385300557 385300666 2.180000e-19 108.0
39 TraesCS5D01G108000 chr6B 83.051 118 18 1 2904 3019 631954596 631954479 7.830000e-19 106.0
40 TraesCS5D01G108000 chr6B 81.197 117 20 1 2904 3018 631954045 631953929 6.100000e-15 93.5
41 TraesCS5D01G108000 chr3D 86.420 81 11 0 566 646 306665725 306665645 7.890000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G108000 chr5D 121289934 121295648 5714 False 10554.000000 10554 100.000000 1 5715 1 chr5D.!!$F2 5714
1 TraesCS5D01G108000 chr5D 121074750 121076206 1456 True 846.450000 1605 94.749000 4310 5654 2 chr5D.!!$R2 1344
2 TraesCS5D01G108000 chr5A 132961238 132970884 9646 False 1074.333333 2974 88.825000 3 5715 6 chr5A.!!$F1 5712
3 TraesCS5D01G108000 chr5A 132093063 132094440 1377 True 834.500000 1550 89.274500 4486 5715 2 chr5A.!!$R1 1229
4 TraesCS5D01G108000 chr5B 134533803 134542081 8278 False 833.142857 1773 89.256429 2 5578 7 chr5B.!!$F2 5576
5 TraesCS5D01G108000 chr5B 134121573 134122255 682 True 361.000000 592 90.385000 5174 5715 2 chr5B.!!$R1 541
6 TraesCS5D01G108000 chr5B 134127446 134128411 965 True 349.700000 813 91.573333 4310 5179 3 chr5B.!!$R2 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 578 0.036732 ACATGCTCCACAACCGACAT 59.963 50.0 0.00 0.00 0.00 3.06 F
873 2664 0.179081 GTAGCCGGCCCAAAGACTAG 60.179 60.0 26.15 0.00 0.00 2.57 F
884 2675 0.322546 AAAGACTAGCCGGCCCAAAG 60.323 55.0 26.15 18.01 0.00 2.77 F
2495 4348 0.035317 GGGATGCGATGATACAGGCA 59.965 55.0 0.00 0.00 40.06 4.75 F
3593 7885 0.179084 GATTCGGTCATTCGGAGCCA 60.179 55.0 0.00 0.00 40.99 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 4092 0.251608 TGGCCTTGTCCCCTAAAAGC 60.252 55.0 3.32 0.0 0.00 3.51 R
2367 4220 0.387565 GGTTTTGGCACATCCGTTGT 59.612 50.0 0.00 0.0 39.30 3.32 R
2821 4674 0.539051 CACTCTCCAATCCGGAAGCT 59.461 55.0 9.01 0.0 45.75 3.74 R
3861 10348 0.035739 AGCGGCGGACCTTTTCTAAA 59.964 50.0 9.78 0.0 0.00 1.85 R
5399 12358 0.108520 AACCGTATCGACAATGGCGT 60.109 50.0 8.85 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.532640 AGCTTCACGACATGCACACA 60.533 50.000 0.00 0.00 0.00 3.72
38 39 1.486726 ACACCTCTAGCATTGTAGGGC 59.513 52.381 0.00 0.00 33.16 5.19
65 66 2.109425 ACTTTAGATGACAACCGCCC 57.891 50.000 0.00 0.00 0.00 6.13
84 85 1.620524 CCATGCCCCCAGAAACAATCT 60.621 52.381 0.00 0.00 39.68 2.40
127 128 3.076621 TGCAACAGCTCCAGTATTTGAG 58.923 45.455 0.00 0.00 0.00 3.02
129 130 3.373439 GCAACAGCTCCAGTATTTGAGAG 59.627 47.826 0.00 0.00 0.00 3.20
134 135 4.394300 CAGCTCCAGTATTTGAGAGTTTGG 59.606 45.833 0.00 0.00 0.00 3.28
141 142 2.435372 TTTGAGAGTTTGGCCACAGT 57.565 45.000 3.88 0.00 0.00 3.55
148 149 1.303236 TTTGGCCACAGTCCCATCG 60.303 57.895 3.88 0.00 0.00 3.84
150 151 1.773856 TTGGCCACAGTCCCATCGAA 61.774 55.000 3.88 0.00 0.00 3.71
173 174 8.003784 CGAAATTAATTTTTGCAAGTCCTTGTC 58.996 33.333 14.45 2.54 42.31 3.18
179 180 2.617274 GCAAGTCCTTGTCGTGGGC 61.617 63.158 8.69 0.00 42.31 5.36
219 220 0.679960 GGCCGGCCATGTTTAACTCT 60.680 55.000 40.73 0.00 35.81 3.24
220 221 1.407712 GGCCGGCCATGTTTAACTCTA 60.408 52.381 40.73 0.00 35.81 2.43
232 233 8.669243 CCATGTTTAACTCTATGTTTCTTCTCC 58.331 37.037 0.00 0.00 39.89 3.71
238 240 5.262804 ACTCTATGTTTCTTCTCCGGTAGT 58.737 41.667 0.00 0.00 0.00 2.73
246 248 5.369409 TTCTTCTCCGGTAGTAGAGATCA 57.631 43.478 0.00 0.00 38.86 2.92
286 288 8.099364 ACCTTGTTATAAACATGTGAGTTGAG 57.901 34.615 0.00 0.00 41.79 3.02
287 289 7.023575 CCTTGTTATAAACATGTGAGTTGAGC 58.976 38.462 0.00 0.00 41.79 4.26
291 293 2.238942 AACATGTGAGTTGAGCGTGA 57.761 45.000 0.00 0.00 0.00 4.35
308 310 2.408704 CGTGACGATTGAAACTCCTCAC 59.591 50.000 0.00 0.00 0.00 3.51
338 340 2.612972 CGTTGCCTAGCCCACCATATAG 60.613 54.545 0.00 0.00 0.00 1.31
339 341 2.637872 GTTGCCTAGCCCACCATATAGA 59.362 50.000 0.00 0.00 0.00 1.98
341 343 1.555533 GCCTAGCCCACCATATAGACC 59.444 57.143 0.00 0.00 0.00 3.85
346 348 2.090494 AGCCCACCATATAGACCAGAGT 60.090 50.000 0.00 0.00 0.00 3.24
358 360 3.296854 AGACCAGAGTGTGACAAGTACA 58.703 45.455 0.00 0.00 0.00 2.90
382 384 3.612479 CGACAAATTGCTCTTGGGAAAGG 60.612 47.826 0.00 0.00 0.00 3.11
391 393 2.040412 CTCTTGGGAAAGGGTGCTACTT 59.960 50.000 0.00 0.00 0.00 2.24
409 411 2.484264 ACTTAGCGTGAACATCCAAAGC 59.516 45.455 0.00 0.00 0.00 3.51
443 445 4.021104 TGGTTTCATCTCCATATAGAGGCG 60.021 45.833 0.00 0.00 34.46 5.52
447 449 4.019858 TCATCTCCATATAGAGGCGGAAG 58.980 47.826 0.00 0.00 34.46 3.46
469 471 6.120507 AGTGAGTCATCTTCCTTTAAAGCT 57.879 37.500 9.86 0.00 0.00 3.74
480 482 6.260936 TCTTCCTTTAAAGCTCAAACACTCTG 59.739 38.462 9.86 0.00 0.00 3.35
488 490 3.331478 CTCAAACACTCTGAGCCATCT 57.669 47.619 4.19 0.00 34.32 2.90
490 492 2.634453 TCAAACACTCTGAGCCATCTGA 59.366 45.455 4.19 0.00 32.98 3.27
508 510 3.817084 TCTGACAGTCAAGCAAAGAATGG 59.183 43.478 4.41 0.00 35.56 3.16
509 511 3.554934 TGACAGTCAAGCAAAGAATGGT 58.445 40.909 0.00 0.00 42.88 3.55
510 512 3.316029 TGACAGTCAAGCAAAGAATGGTG 59.684 43.478 0.00 0.00 40.33 4.17
522 524 4.460948 AAGAATGGTGCCATGAATCAAC 57.539 40.909 4.26 0.00 36.68 3.18
527 529 1.826720 GGTGCCATGAATCAACCACAT 59.173 47.619 11.41 0.00 0.00 3.21
556 558 3.670377 GGGCACGCCAAAGACACC 61.670 66.667 10.83 0.00 37.98 4.16
564 566 0.242017 GCCAAAGACACCACATGCTC 59.758 55.000 0.00 0.00 0.00 4.26
569 571 0.473755 AGACACCACATGCTCCACAA 59.526 50.000 0.00 0.00 0.00 3.33
571 573 0.823356 ACACCACATGCTCCACAACC 60.823 55.000 0.00 0.00 0.00 3.77
576 578 0.036732 ACATGCTCCACAACCGACAT 59.963 50.000 0.00 0.00 0.00 3.06
583 585 2.080693 TCCACAACCGACATTACATGC 58.919 47.619 0.00 0.00 0.00 4.06
588 590 2.309528 ACCGACATTACATGCACGAT 57.690 45.000 0.00 0.00 36.16 3.73
595 597 5.738693 CGACATTACATGCACGATTGAAAAT 59.261 36.000 0.00 0.00 36.16 1.82
596 598 6.075936 CGACATTACATGCACGATTGAAAATC 60.076 38.462 0.00 0.00 36.16 2.17
608 610 4.974275 CGATTGAAAATCAGATGGATGTGC 59.026 41.667 1.30 0.00 36.02 4.57
612 614 2.430248 AATCAGATGGATGTGCTGCA 57.570 45.000 0.00 0.00 36.02 4.41
648 650 2.092968 TGGATGGCTGGATGTGAAGTAC 60.093 50.000 0.00 0.00 0.00 2.73
649 651 2.171448 GGATGGCTGGATGTGAAGTACT 59.829 50.000 0.00 0.00 0.00 2.73
654 672 6.161855 TGGCTGGATGTGAAGTACTATAAG 57.838 41.667 0.00 0.00 0.00 1.73
662 680 6.694877 TGTGAAGTACTATAAGCATCGTCT 57.305 37.500 0.00 0.00 0.00 4.18
682 700 3.988976 TGCATAGCAGGACTCTTCTTT 57.011 42.857 0.00 0.00 33.32 2.52
688 706 6.422400 GCATAGCAGGACTCTTCTTTATACAC 59.578 42.308 0.00 0.00 0.00 2.90
689 707 7.492524 CATAGCAGGACTCTTCTTTATACACA 58.507 38.462 0.00 0.00 0.00 3.72
692 710 6.014156 AGCAGGACTCTTCTTTATACACACTT 60.014 38.462 0.00 0.00 0.00 3.16
699 717 4.901197 TCTTTATACACACTTCTGCCCA 57.099 40.909 0.00 0.00 0.00 5.36
700 718 4.575885 TCTTTATACACACTTCTGCCCAC 58.424 43.478 0.00 0.00 0.00 4.61
703 721 5.950544 TTATACACACTTCTGCCCACTAT 57.049 39.130 0.00 0.00 0.00 2.12
705 723 5.950544 ATACACACTTCTGCCCACTATAA 57.049 39.130 0.00 0.00 0.00 0.98
732 755 1.341383 GGACCTTGCCAATCTCCATGT 60.341 52.381 0.00 0.00 0.00 3.21
737 760 4.463891 ACCTTGCCAATCTCCATGTAAAAG 59.536 41.667 0.00 0.00 0.00 2.27
740 763 4.922206 TGCCAATCTCCATGTAAAAGTCT 58.078 39.130 0.00 0.00 0.00 3.24
744 767 6.071952 GCCAATCTCCATGTAAAAGTCTGAAA 60.072 38.462 0.00 0.00 0.00 2.69
749 772 9.918630 ATCTCCATGTAAAAGTCTGAAATTTTG 57.081 29.630 10.48 0.00 31.41 2.44
873 2664 0.179081 GTAGCCGGCCCAAAGACTAG 60.179 60.000 26.15 0.00 0.00 2.57
874 2665 1.968050 TAGCCGGCCCAAAGACTAGC 61.968 60.000 26.15 0.00 0.00 3.42
875 2666 2.124695 CCGGCCCAAAGACTAGCC 60.125 66.667 0.00 0.00 42.18 3.93
877 2668 2.124695 GGCCCAAAGACTAGCCGG 60.125 66.667 0.00 0.00 35.30 6.13
878 2669 2.824489 GCCCAAAGACTAGCCGGC 60.824 66.667 21.89 21.89 0.00 6.13
879 2670 2.124695 CCCAAAGACTAGCCGGCC 60.125 66.667 26.15 7.74 0.00 6.13
880 2671 2.124695 CCAAAGACTAGCCGGCCC 60.125 66.667 26.15 10.40 0.00 5.80
881 2672 2.668632 CAAAGACTAGCCGGCCCA 59.331 61.111 26.15 11.01 0.00 5.36
882 2673 1.002624 CAAAGACTAGCCGGCCCAA 60.003 57.895 26.15 8.38 0.00 4.12
883 2674 0.608035 CAAAGACTAGCCGGCCCAAA 60.608 55.000 26.15 5.40 0.00 3.28
884 2675 0.322546 AAAGACTAGCCGGCCCAAAG 60.323 55.000 26.15 18.01 0.00 2.77
885 2676 1.198759 AAGACTAGCCGGCCCAAAGA 61.199 55.000 26.15 0.14 0.00 2.52
886 2677 1.449778 GACTAGCCGGCCCAAAGAC 60.450 63.158 26.15 12.30 0.00 3.01
904 2695 7.201652 CCCAAAGACGATAATTCTTCTTCTTCC 60.202 40.741 9.24 0.00 38.97 3.46
953 2746 1.076332 CGAACGCCTAGGGTTTGAAG 58.924 55.000 18.69 8.45 40.76 3.02
999 2798 0.391130 CACCACCACTATCACCCACG 60.391 60.000 0.00 0.00 0.00 4.94
1082 2884 4.364686 GGGGAAGGGGAGGTGGGA 62.365 72.222 0.00 0.00 0.00 4.37
1098 2900 1.221021 GGACGGGAAGAAGCGGAAT 59.779 57.895 0.00 0.00 0.00 3.01
1166 2968 1.672356 CCAACGCCAAGTCCAGGAG 60.672 63.158 0.00 0.00 0.00 3.69
1247 3049 1.594293 CAGAAACCACACGCGACCT 60.594 57.895 15.93 0.00 0.00 3.85
1359 3161 1.337167 GCTTGTCCCCAAATGCTTGAC 60.337 52.381 0.00 0.00 34.14 3.18
1372 3174 6.201806 CCAAATGCTTGACGGTTTTGATTAAA 59.798 34.615 3.05 0.00 34.14 1.52
1382 3184 6.816377 ACGGTTTTGATTAAATTTGAATGCG 58.184 32.000 0.00 0.00 0.00 4.73
1388 3190 8.682128 TTTGATTAAATTTGAATGCGGACTAC 57.318 30.769 0.00 0.00 0.00 2.73
1399 3201 5.745294 TGAATGCGGACTACTAATTTCGTAC 59.255 40.000 0.00 0.00 0.00 3.67
1401 3203 6.624352 ATGCGGACTACTAATTTCGTACTA 57.376 37.500 0.00 0.00 0.00 1.82
1403 3205 6.851609 TGCGGACTACTAATTTCGTACTAAA 58.148 36.000 0.00 0.00 0.00 1.85
1404 3206 7.312154 TGCGGACTACTAATTTCGTACTAAAA 58.688 34.615 0.00 0.00 0.00 1.52
1405 3207 7.273381 TGCGGACTACTAATTTCGTACTAAAAC 59.727 37.037 0.00 0.00 0.00 2.43
1406 3208 7.273381 GCGGACTACTAATTTCGTACTAAAACA 59.727 37.037 0.00 0.00 0.00 2.83
1449 3273 2.832129 AGGACTTCGAGCATAGGAACAA 59.168 45.455 0.00 0.00 0.00 2.83
1461 3285 7.330900 AGCATAGGAACAAAATCTTCTCATG 57.669 36.000 0.00 0.00 0.00 3.07
1476 3300 2.983192 TCTCATGTTGTCCCCTTGGTTA 59.017 45.455 0.00 0.00 0.00 2.85
1484 3308 2.916934 TGTCCCCTTGGTTAGCTATGTT 59.083 45.455 0.00 0.00 0.00 2.71
1515 3341 3.545078 GCGCAGTTTGATCATGAATTGAC 59.455 43.478 0.30 0.00 37.11 3.18
1546 3372 1.382557 TAATCTGAGGGCGCTGGGA 60.383 57.895 8.56 6.37 0.00 4.37
1547 3373 0.980754 TAATCTGAGGGCGCTGGGAA 60.981 55.000 8.56 0.00 0.00 3.97
1551 3377 2.262774 CTGAGGGCGCTGGGAAAGAT 62.263 60.000 8.56 0.00 0.00 2.40
1557 3383 0.749454 GCGCTGGGAAAGATGGTCAT 60.749 55.000 0.00 0.00 0.00 3.06
1559 3385 1.407299 CGCTGGGAAAGATGGTCATCA 60.407 52.381 12.75 0.00 40.22 3.07
1567 3394 4.335416 GAAAGATGGTCATCAGGGTTCAA 58.665 43.478 12.75 0.00 40.22 2.69
1579 3414 4.843728 TCAGGGTTCAACTACATGATTCC 58.156 43.478 0.00 0.00 0.00 3.01
1608 3443 9.835389 AACATTGATGAAATTGGAGAAAGAAAA 57.165 25.926 0.00 0.00 0.00 2.29
1609 3444 9.835389 ACATTGATGAAATTGGAGAAAGAAAAA 57.165 25.926 0.00 0.00 0.00 1.94
1611 3446 8.891671 TTGATGAAATTGGAGAAAGAAAAAGG 57.108 30.769 0.00 0.00 0.00 3.11
1674 3511 9.343539 AGTATTCTCAGCTAAGTTTTTGTTCTT 57.656 29.630 0.00 0.00 0.00 2.52
1683 3520 5.975693 AAGTTTTTGTTCTTGTGGACAGA 57.024 34.783 0.00 0.00 0.00 3.41
1694 3531 4.286808 TCTTGTGGACAGATTTCTCATGGA 59.713 41.667 0.00 0.00 0.00 3.41
1732 3569 3.747854 TGCTCATGTTCAATTTGGCAA 57.252 38.095 0.00 0.00 0.00 4.52
1808 3646 5.662815 GCGTGCTTAAACATGTTTGAATTCG 60.663 40.000 29.72 25.46 34.23 3.34
1810 3648 5.174761 GTGCTTAAACATGTTTGAATTCGCA 59.825 36.000 29.72 23.17 34.23 5.10
1813 3651 6.614162 GCTTAAACATGTTTGAATTCGCACTG 60.614 38.462 29.72 10.52 34.23 3.66
1817 3655 4.083324 ACATGTTTGAATTCGCACTGGTAG 60.083 41.667 0.04 0.00 0.00 3.18
1831 3669 4.394920 GCACTGGTAGTTGCTGCTTAATAA 59.605 41.667 0.00 0.00 0.00 1.40
1834 3672 7.023575 CACTGGTAGTTGCTGCTTAATAAAAG 58.976 38.462 0.00 0.00 0.00 2.27
1836 3674 7.119846 ACTGGTAGTTGCTGCTTAATAAAAGAG 59.880 37.037 0.00 0.00 0.00 2.85
1856 3694 1.953686 GCTGTTTCTGGTACTTGCCAA 59.046 47.619 0.00 0.00 38.18 4.52
1857 3695 2.360801 GCTGTTTCTGGTACTTGCCAAA 59.639 45.455 0.00 0.00 38.18 3.28
1861 3699 6.572314 GCTGTTTCTGGTACTTGCCAAATAAT 60.572 38.462 0.00 0.00 38.18 1.28
1876 3714 6.259608 TGCCAAATAATTTTGACCTGTTTGTG 59.740 34.615 0.19 0.00 44.11 3.33
1933 3781 4.577693 CCTGTATGATATGTGCTGCTTTGT 59.422 41.667 0.00 0.00 0.00 2.83
1942 3790 1.610522 GTGCTGCTTTGTCATCTGGTT 59.389 47.619 0.00 0.00 0.00 3.67
1943 3791 2.035066 GTGCTGCTTTGTCATCTGGTTT 59.965 45.455 0.00 0.00 0.00 3.27
1944 3792 2.034939 TGCTGCTTTGTCATCTGGTTTG 59.965 45.455 0.00 0.00 0.00 2.93
2038 3891 5.983540 AGGAGTTCTACAGGAATGCTAAAG 58.016 41.667 0.00 0.00 36.24 1.85
2144 3997 2.651382 GGTACCAACCACCAAGTCTT 57.349 50.000 7.15 0.00 45.98 3.01
2180 4033 6.575162 AGTGATAATTTGACCAAAGTGGAC 57.425 37.500 0.18 0.00 40.96 4.02
2187 4040 0.951040 GACCAAAGTGGACAGCGGAG 60.951 60.000 0.18 0.00 40.96 4.63
2204 4057 2.301346 GGAGGTTGTGATGGGCTTATG 58.699 52.381 0.00 0.00 0.00 1.90
2205 4058 1.678101 GAGGTTGTGATGGGCTTATGC 59.322 52.381 0.00 0.00 38.76 3.14
2207 4060 1.134946 GGTTGTGATGGGCTTATGCAC 59.865 52.381 2.72 0.00 44.33 4.57
2222 4075 7.096551 GGCTTATGCACTCCTTTATTTTTGAA 58.903 34.615 2.72 0.00 41.91 2.69
2260 4113 0.854218 TTTTAGGGGACAAGGCCACA 59.146 50.000 5.01 0.00 32.19 4.17
2261 4114 0.404040 TTTAGGGGACAAGGCCACAG 59.596 55.000 5.01 0.00 32.19 3.66
2262 4115 2.137177 TTAGGGGACAAGGCCACAGC 62.137 60.000 5.01 0.00 32.19 4.40
2272 4125 2.647297 GCCACAGCCAAGACTTGC 59.353 61.111 9.85 5.68 0.00 4.01
2273 4126 2.924105 GCCACAGCCAAGACTTGCC 61.924 63.158 9.85 0.00 0.00 4.52
2274 4127 1.529010 CCACAGCCAAGACTTGCCA 60.529 57.895 9.85 0.00 0.00 4.92
2275 4128 0.896940 CCACAGCCAAGACTTGCCAT 60.897 55.000 9.85 0.00 0.00 4.40
2276 4129 1.614051 CCACAGCCAAGACTTGCCATA 60.614 52.381 9.85 0.00 0.00 2.74
2277 4130 2.161855 CACAGCCAAGACTTGCCATAA 58.838 47.619 9.85 0.00 0.00 1.90
2278 4131 2.095059 CACAGCCAAGACTTGCCATAAC 60.095 50.000 9.85 0.00 0.00 1.89
2279 4132 2.224867 ACAGCCAAGACTTGCCATAACT 60.225 45.455 9.85 0.00 0.00 2.24
2280 4133 2.821969 CAGCCAAGACTTGCCATAACTT 59.178 45.455 9.85 0.00 0.00 2.66
2281 4134 2.821969 AGCCAAGACTTGCCATAACTTG 59.178 45.455 9.85 0.00 38.02 3.16
2282 4135 2.819608 GCCAAGACTTGCCATAACTTGA 59.180 45.455 9.85 0.00 39.84 3.02
2283 4136 3.366374 GCCAAGACTTGCCATAACTTGAC 60.366 47.826 9.85 0.00 39.84 3.18
2284 4137 3.820467 CCAAGACTTGCCATAACTTGACA 59.180 43.478 9.85 0.00 39.84 3.58
2285 4138 4.460382 CCAAGACTTGCCATAACTTGACAT 59.540 41.667 9.85 0.00 39.84 3.06
2286 4139 5.047802 CCAAGACTTGCCATAACTTGACATT 60.048 40.000 9.85 0.00 39.84 2.71
2287 4140 5.633830 AGACTTGCCATAACTTGACATTG 57.366 39.130 0.00 0.00 0.00 2.82
2297 4150 8.673711 GCCATAACTTGACATTGTATCTTGTTA 58.326 33.333 0.00 0.00 0.00 2.41
2306 4159 9.419297 TGACATTGTATCTTGTTAGTTCTACAC 57.581 33.333 0.00 0.00 0.00 2.90
2315 4168 6.260714 TCTTGTTAGTTCTACACGTGTACAGA 59.739 38.462 24.10 19.51 0.00 3.41
2342 4195 5.886715 TTTTTGTGTCTTGATGCAATTCG 57.113 34.783 0.00 0.00 0.00 3.34
2367 4220 3.398318 TGTAGGAAGGAGGTGCTGATA 57.602 47.619 0.00 0.00 0.00 2.15
2370 4223 2.551270 AGGAAGGAGGTGCTGATACAA 58.449 47.619 0.00 0.00 0.00 2.41
2408 4261 4.437239 CACATGATAAGAGGAAGAAGCGT 58.563 43.478 0.00 0.00 0.00 5.07
2448 4301 3.232771 GTGGAGTACGAGAAGAAACGTC 58.767 50.000 0.00 0.00 42.61 4.34
2495 4348 0.035317 GGGATGCGATGATACAGGCA 59.965 55.000 0.00 0.00 40.06 4.75
2564 4417 3.516615 GGAGAAGATGTTCAAGAGGACG 58.483 50.000 5.28 0.00 34.82 4.79
2607 4460 3.951775 AATACAGGATCGAGCATCTCC 57.048 47.619 1.84 0.00 30.00 3.71
2758 4611 8.517878 AGTTTATACATCTTGGCAATGCATATC 58.482 33.333 7.79 0.00 0.00 1.63
2768 4621 4.650131 TGGCAATGCATATCTGGATTTCAA 59.350 37.500 7.79 0.00 40.12 2.69
2803 4656 0.916358 AGATACTGGTGCTTGGCCCT 60.916 55.000 0.00 0.00 0.00 5.19
2806 4659 1.207488 TACTGGTGCTTGGCCCTCAT 61.207 55.000 0.00 0.00 0.00 2.90
2821 4674 5.045213 TGGCCCTCATTATGTTTCTGTTAGA 60.045 40.000 0.00 0.00 0.00 2.10
2827 4680 7.011857 CCTCATTATGTTTCTGTTAGAGCTTCC 59.988 40.741 0.00 0.00 0.00 3.46
2863 4716 1.762957 GCCATGTCTAGTGGGAGCTTA 59.237 52.381 0.00 0.00 37.22 3.09
2885 4738 3.695606 TCGGAGAGCACTGTGGGC 61.696 66.667 10.21 0.00 0.00 5.36
2922 4775 4.083484 GCAGAGTTTTAAAAAGCGCTAGGA 60.083 41.667 12.05 0.00 29.24 2.94
2932 4785 9.550406 TTTAAAAAGCGCTAGGAGCTAATTATA 57.450 29.630 12.05 0.00 45.31 0.98
2939 4792 6.615839 GCGCTAGGAGCTAATTATACGTTTTG 60.616 42.308 0.00 0.00 39.60 2.44
2965 4818 1.474855 GCCTTGCTTTTCTGCCCAAAA 60.475 47.619 0.00 0.00 0.00 2.44
2967 4820 2.419851 CCTTGCTTTTCTGCCCAAAACA 60.420 45.455 0.00 0.00 0.00 2.83
2970 4823 4.679373 TGCTTTTCTGCCCAAAACATAA 57.321 36.364 0.00 0.00 0.00 1.90
2978 4831 4.114794 CTGCCCAAAACATAAGCTAATGC 58.885 43.478 0.00 0.00 40.05 3.56
3063 4916 9.700831 ACTATTCTTAGGAATGCCACTAAAATT 57.299 29.630 10.18 0.00 41.66 1.82
3129 4983 1.688735 TCAAGAGATATGGCCTGACGG 59.311 52.381 3.32 0.00 0.00 4.79
3167 5021 4.589374 ACAGATCCTAACCCTGTATGTAGC 59.411 45.833 0.00 0.00 39.15 3.58
3168 5022 4.588951 CAGATCCTAACCCTGTATGTAGCA 59.411 45.833 0.00 0.00 0.00 3.49
3169 5023 4.835615 AGATCCTAACCCTGTATGTAGCAG 59.164 45.833 0.00 0.00 0.00 4.24
3170 5024 3.990369 TCCTAACCCTGTATGTAGCAGT 58.010 45.455 0.00 0.00 32.41 4.40
3171 5025 3.704566 TCCTAACCCTGTATGTAGCAGTG 59.295 47.826 0.00 0.00 32.41 3.66
3172 5026 3.704566 CCTAACCCTGTATGTAGCAGTGA 59.295 47.826 0.00 0.00 32.41 3.41
3173 5027 4.345257 CCTAACCCTGTATGTAGCAGTGAT 59.655 45.833 0.00 0.00 32.41 3.06
3174 5028 3.827008 ACCCTGTATGTAGCAGTGATG 57.173 47.619 0.00 0.00 32.41 3.07
3175 5029 2.435805 ACCCTGTATGTAGCAGTGATGG 59.564 50.000 0.00 0.00 32.41 3.51
3176 5030 2.487934 CCTGTATGTAGCAGTGATGGC 58.512 52.381 0.00 0.00 32.41 4.40
3177 5031 2.487934 CTGTATGTAGCAGTGATGGCC 58.512 52.381 0.00 0.00 0.00 5.36
3179 5033 1.119684 TATGTAGCAGTGATGGCCGT 58.880 50.000 0.00 0.00 0.00 5.68
3181 5035 1.815421 GTAGCAGTGATGGCCGTGG 60.815 63.158 0.00 0.00 0.00 4.94
3182 5036 3.680620 TAGCAGTGATGGCCGTGGC 62.681 63.158 0.00 1.16 41.06 5.01
3200 5054 4.329545 GCCCCTTGTGCGAGACCA 62.330 66.667 0.00 0.00 0.00 4.02
3201 5055 2.429930 CCCCTTGTGCGAGACCAA 59.570 61.111 0.00 0.00 0.00 3.67
3202 5056 1.672356 CCCCTTGTGCGAGACCAAG 60.672 63.158 0.00 0.00 38.21 3.61
3205 5059 3.540211 CTTGTGCGAGACCAAGGAT 57.460 52.632 0.00 0.00 35.51 3.24
3206 5060 1.081892 CTTGTGCGAGACCAAGGATG 58.918 55.000 0.00 0.00 35.51 3.51
3208 5062 1.262417 TGTGCGAGACCAAGGATGTA 58.738 50.000 0.00 0.00 0.00 2.29
3229 5083 1.580845 CTGCAAGTTCAAGCCCTCCG 61.581 60.000 0.00 0.00 0.00 4.63
3272 5696 6.590828 GAGGATCTCATTCCTGAGCTCTGC 62.591 54.167 16.19 0.00 46.35 4.26
3273 5697 2.974845 CTCATTCCTGAGCTCTGCG 58.025 57.895 16.19 8.78 42.36 5.18
3299 5723 0.807667 CAGGTGAGGAGGAATTCGCG 60.808 60.000 0.00 0.00 0.00 5.87
3304 5728 3.564027 GGAGGAATTCGCGCACCG 61.564 66.667 8.75 0.00 38.61 4.94
3317 5741 2.174107 CACCGCGTGTGCATCAAG 59.826 61.111 13.44 0.00 42.97 3.02
3318 5742 3.726517 ACCGCGTGTGCATCAAGC 61.727 61.111 4.92 13.94 45.41 4.01
3319 5743 4.465512 CCGCGTGTGCATCAAGCC 62.466 66.667 16.64 4.96 45.95 4.35
3320 5744 3.725459 CGCGTGTGCATCAAGCCA 61.725 61.111 16.64 0.00 45.95 4.75
3321 5745 2.879907 GCGTGTGCATCAAGCCAT 59.120 55.556 13.29 0.00 43.69 4.40
3333 5757 1.003580 TCAAGCCATCAACCTGGAGAC 59.996 52.381 0.00 0.00 38.69 3.36
3334 5758 1.067295 AAGCCATCAACCTGGAGACA 58.933 50.000 0.00 0.00 38.69 3.41
3336 5760 1.168714 GCCATCAACCTGGAGACAAC 58.831 55.000 0.00 0.00 42.06 3.32
3339 5763 2.816087 CCATCAACCTGGAGACAACTTG 59.184 50.000 0.00 0.00 42.06 3.16
3340 5764 1.967319 TCAACCTGGAGACAACTTGC 58.033 50.000 0.00 0.00 42.06 4.01
3341 5765 0.588252 CAACCTGGAGACAACTTGCG 59.412 55.000 0.00 0.00 42.06 4.85
3363 5788 1.069022 CGTTTTGTGGATGAGGTGCTG 60.069 52.381 0.00 0.00 0.00 4.41
3474 7244 1.686355 TCTTCCTCGAGCCTGATCTC 58.314 55.000 6.99 0.00 0.00 2.75
3507 7799 0.981277 TTCCCCGGGGATTCTGAGAC 60.981 60.000 42.75 0.00 44.74 3.36
3561 7853 5.986135 GCACATTGACTAGGTAATCGATCTT 59.014 40.000 0.00 0.00 0.00 2.40
3573 7865 0.532573 TCGATCTTGTGCCTCTGGAC 59.467 55.000 0.00 0.00 0.00 4.02
3581 7873 1.982395 TGCCTCTGGACGATTCGGT 60.982 57.895 11.29 0.00 0.00 4.69
3582 7874 1.227002 GCCTCTGGACGATTCGGTC 60.227 63.158 11.29 5.67 36.18 4.79
3583 7875 1.945354 GCCTCTGGACGATTCGGTCA 61.945 60.000 11.29 7.16 38.70 4.02
3584 7876 0.747255 CCTCTGGACGATTCGGTCAT 59.253 55.000 11.29 0.00 38.70 3.06
3585 7877 1.137086 CCTCTGGACGATTCGGTCATT 59.863 52.381 11.29 0.00 38.70 2.57
3586 7878 2.464865 CTCTGGACGATTCGGTCATTC 58.535 52.381 11.29 0.00 38.70 2.67
3587 7879 1.200483 CTGGACGATTCGGTCATTCG 58.800 55.000 11.29 0.00 38.70 3.34
3588 7880 0.179121 TGGACGATTCGGTCATTCGG 60.179 55.000 11.29 0.00 38.70 4.30
3593 7885 0.179084 GATTCGGTCATTCGGAGCCA 60.179 55.000 0.00 0.00 40.99 4.75
3601 7893 2.866762 GTCATTCGGAGCCACTATTCAC 59.133 50.000 0.00 0.00 0.00 3.18
3610 7902 2.408050 GCCACTATTCACGGCAGATAG 58.592 52.381 0.00 0.00 45.52 2.08
3633 7925 2.203640 ACAGTGGACAGAGCGGGA 60.204 61.111 0.00 0.00 0.00 5.14
3690 10177 9.730705 TCTCTGAAATCTTCACATTAAACTCAT 57.269 29.630 0.00 0.00 35.46 2.90
3706 10193 4.623932 ACTCATTAGAACTGTGAAGGCA 57.376 40.909 0.00 0.00 0.00 4.75
3730 10217 2.169978 CAGGAGATGGAGCAATGAGACA 59.830 50.000 0.00 0.00 0.00 3.41
3733 10220 3.814283 GGAGATGGAGCAATGAGACAATC 59.186 47.826 0.00 0.00 0.00 2.67
3734 10221 4.449131 GAGATGGAGCAATGAGACAATCA 58.551 43.478 0.00 0.00 43.70 2.57
3735 10222 4.452825 AGATGGAGCAATGAGACAATCAG 58.547 43.478 0.00 0.00 42.53 2.90
3736 10223 3.708403 TGGAGCAATGAGACAATCAGT 57.292 42.857 0.00 0.00 42.53 3.41
3737 10224 4.824479 TGGAGCAATGAGACAATCAGTA 57.176 40.909 0.00 0.00 42.53 2.74
3738 10225 5.164620 TGGAGCAATGAGACAATCAGTAA 57.835 39.130 0.00 0.00 42.53 2.24
3739 10226 4.937620 TGGAGCAATGAGACAATCAGTAAC 59.062 41.667 0.00 0.00 42.53 2.50
3740 10227 4.333926 GGAGCAATGAGACAATCAGTAACC 59.666 45.833 0.00 0.00 42.53 2.85
3741 10228 5.171339 AGCAATGAGACAATCAGTAACCT 57.829 39.130 0.00 0.00 42.53 3.50
3742 10229 4.940046 AGCAATGAGACAATCAGTAACCTG 59.060 41.667 0.00 0.00 42.53 4.00
3743 10230 4.437930 GCAATGAGACAATCAGTAACCTGC 60.438 45.833 0.00 0.00 42.53 4.85
3744 10231 4.558226 ATGAGACAATCAGTAACCTGCA 57.442 40.909 0.00 0.00 42.53 4.41
3745 10232 3.664107 TGAGACAATCAGTAACCTGCAC 58.336 45.455 0.00 0.00 38.66 4.57
3746 10233 3.324846 TGAGACAATCAGTAACCTGCACT 59.675 43.478 0.00 0.00 38.66 4.40
3747 10234 3.668447 AGACAATCAGTAACCTGCACTG 58.332 45.455 0.00 0.00 43.92 3.66
3748 10235 3.071602 AGACAATCAGTAACCTGCACTGT 59.928 43.478 2.70 0.00 43.21 3.55
3749 10236 3.815401 GACAATCAGTAACCTGCACTGTT 59.185 43.478 2.70 2.20 43.21 3.16
3750 10237 4.207165 ACAATCAGTAACCTGCACTGTTT 58.793 39.130 2.46 0.00 43.21 2.83
3751 10238 4.644685 ACAATCAGTAACCTGCACTGTTTT 59.355 37.500 2.46 0.00 43.21 2.43
3752 10239 5.825679 ACAATCAGTAACCTGCACTGTTTTA 59.174 36.000 2.46 0.00 43.21 1.52
3753 10240 6.320164 ACAATCAGTAACCTGCACTGTTTTAA 59.680 34.615 2.46 0.00 43.21 1.52
3754 10241 6.952773 ATCAGTAACCTGCACTGTTTTAAA 57.047 33.333 2.46 0.00 43.21 1.52
3755 10242 6.952773 TCAGTAACCTGCACTGTTTTAAAT 57.047 33.333 2.46 0.00 43.21 1.40
3756 10243 8.630054 ATCAGTAACCTGCACTGTTTTAAATA 57.370 30.769 2.46 0.00 43.21 1.40
3757 10244 8.094798 TCAGTAACCTGCACTGTTTTAAATAG 57.905 34.615 2.46 0.00 43.21 1.73
3758 10245 6.801862 CAGTAACCTGCACTGTTTTAAATAGC 59.198 38.462 1.36 0.00 38.86 2.97
3759 10246 4.783764 ACCTGCACTGTTTTAAATAGCC 57.216 40.909 1.36 0.00 0.00 3.93
3760 10247 3.509967 ACCTGCACTGTTTTAAATAGCCC 59.490 43.478 1.36 0.00 0.00 5.19
3761 10248 3.427503 CCTGCACTGTTTTAAATAGCCCG 60.428 47.826 1.36 0.00 0.00 6.13
3762 10249 2.094957 TGCACTGTTTTAAATAGCCCGC 60.095 45.455 1.36 3.42 0.00 6.13
3763 10250 2.163613 GCACTGTTTTAAATAGCCCGCT 59.836 45.455 1.36 0.00 0.00 5.52
3764 10251 3.375922 GCACTGTTTTAAATAGCCCGCTA 59.624 43.478 0.00 0.00 0.00 4.26
3765 10252 4.036380 GCACTGTTTTAAATAGCCCGCTAT 59.964 41.667 3.31 3.31 40.63 2.97
3766 10253 5.237779 GCACTGTTTTAAATAGCCCGCTATA 59.762 40.000 9.56 0.00 38.20 1.31
3767 10254 6.565999 GCACTGTTTTAAATAGCCCGCTATAG 60.566 42.308 9.56 4.62 38.20 1.31
3768 10255 5.469084 ACTGTTTTAAATAGCCCGCTATAGC 59.531 40.000 15.09 15.09 38.20 2.97
3769 10256 5.617252 TGTTTTAAATAGCCCGCTATAGCT 58.383 37.500 21.98 6.31 43.20 3.32
3770 10257 5.699458 TGTTTTAAATAGCCCGCTATAGCTC 59.301 40.000 21.98 11.04 40.56 4.09
3771 10258 5.740290 TTTAAATAGCCCGCTATAGCTCT 57.260 39.130 21.98 16.91 40.56 4.09
3772 10259 3.601443 AAATAGCCCGCTATAGCTCTG 57.399 47.619 21.98 11.16 40.56 3.35
3773 10260 0.820871 ATAGCCCGCTATAGCTCTGC 59.179 55.000 21.98 19.32 40.56 4.26
3774 10261 0.251386 TAGCCCGCTATAGCTCTGCT 60.251 55.000 25.64 25.64 43.41 4.24
3775 10262 0.251386 AGCCCGCTATAGCTCTGCTA 60.251 55.000 22.97 1.60 45.55 3.49
3793 10280 2.869192 GCTATAGCACAGAAGGTCTTGC 59.131 50.000 20.01 0.00 41.59 4.01
3794 10281 2.015736 ATAGCACAGAAGGTCTTGCG 57.984 50.000 0.00 0.00 36.41 4.85
3795 10282 0.670546 TAGCACAGAAGGTCTTGCGC 60.671 55.000 0.00 0.00 36.41 6.09
3796 10283 1.963338 GCACAGAAGGTCTTGCGCT 60.963 57.895 9.73 0.00 0.00 5.92
3797 10284 0.670546 GCACAGAAGGTCTTGCGCTA 60.671 55.000 9.73 0.00 0.00 4.26
3798 10285 1.795768 CACAGAAGGTCTTGCGCTAA 58.204 50.000 9.73 0.00 0.00 3.09
3799 10286 1.728971 CACAGAAGGTCTTGCGCTAAG 59.271 52.381 9.73 11.02 37.76 2.18
3800 10287 1.618837 ACAGAAGGTCTTGCGCTAAGA 59.381 47.619 9.73 13.31 43.01 2.10
3801 10288 2.266554 CAGAAGGTCTTGCGCTAAGAG 58.733 52.381 18.44 8.07 45.71 2.85
3802 10289 2.094494 CAGAAGGTCTTGCGCTAAGAGA 60.094 50.000 18.44 9.99 45.71 3.10
3803 10290 2.094442 AGAAGGTCTTGCGCTAAGAGAC 60.094 50.000 18.44 18.59 45.71 3.36
3804 10291 1.551452 AGGTCTTGCGCTAAGAGACT 58.449 50.000 22.91 18.83 45.71 3.24
3805 10292 1.896465 AGGTCTTGCGCTAAGAGACTT 59.104 47.619 22.91 17.23 45.71 3.01
3806 10293 2.300437 AGGTCTTGCGCTAAGAGACTTT 59.700 45.455 22.91 14.31 45.71 2.66
3807 10294 2.413453 GGTCTTGCGCTAAGAGACTTTG 59.587 50.000 22.91 0.00 45.71 2.77
3808 10295 3.318017 GTCTTGCGCTAAGAGACTTTGA 58.682 45.455 18.44 0.00 45.71 2.69
3809 10296 3.929610 GTCTTGCGCTAAGAGACTTTGAT 59.070 43.478 18.44 0.00 45.71 2.57
3810 10297 4.032331 GTCTTGCGCTAAGAGACTTTGATC 59.968 45.833 18.44 4.68 45.71 2.92
3811 10298 2.893637 TGCGCTAAGAGACTTTGATCC 58.106 47.619 9.73 0.00 0.00 3.36
3812 10299 2.233676 TGCGCTAAGAGACTTTGATCCA 59.766 45.455 9.73 0.00 0.00 3.41
3813 10300 3.262420 GCGCTAAGAGACTTTGATCCAA 58.738 45.455 0.00 0.00 0.00 3.53
3814 10301 3.684788 GCGCTAAGAGACTTTGATCCAAA 59.315 43.478 0.00 0.00 0.00 3.28
3815 10302 4.436183 GCGCTAAGAGACTTTGATCCAAAC 60.436 45.833 0.00 0.00 0.00 2.93
3816 10303 4.690748 CGCTAAGAGACTTTGATCCAAACA 59.309 41.667 0.00 0.00 0.00 2.83
3817 10304 5.179368 CGCTAAGAGACTTTGATCCAAACAA 59.821 40.000 0.00 0.00 0.00 2.83
3818 10305 6.293407 CGCTAAGAGACTTTGATCCAAACAAA 60.293 38.462 0.00 0.00 36.15 2.83
3819 10306 7.573843 CGCTAAGAGACTTTGATCCAAACAAAT 60.574 37.037 0.00 0.00 36.79 2.32
3820 10307 7.540055 GCTAAGAGACTTTGATCCAAACAAATG 59.460 37.037 0.00 0.00 36.79 2.32
3821 10308 7.587037 AAGAGACTTTGATCCAAACAAATGA 57.413 32.000 0.00 0.00 36.79 2.57
3822 10309 7.587037 AGAGACTTTGATCCAAACAAATGAA 57.413 32.000 0.00 0.00 36.79 2.57
3823 10310 7.428826 AGAGACTTTGATCCAAACAAATGAAC 58.571 34.615 0.00 0.00 36.79 3.18
3824 10311 7.068593 AGAGACTTTGATCCAAACAAATGAACA 59.931 33.333 0.00 0.00 36.79 3.18
3825 10312 7.555087 AGACTTTGATCCAAACAAATGAACAA 58.445 30.769 0.00 0.00 36.79 2.83
3826 10313 8.040132 AGACTTTGATCCAAACAAATGAACAAA 58.960 29.630 0.00 0.00 36.79 2.83
3827 10314 7.973601 ACTTTGATCCAAACAAATGAACAAAC 58.026 30.769 0.00 0.00 36.79 2.93
3828 10315 7.605691 ACTTTGATCCAAACAAATGAACAAACA 59.394 29.630 0.00 0.00 36.79 2.83
3829 10316 8.503458 TTTGATCCAAACAAATGAACAAACAT 57.497 26.923 0.00 0.00 33.25 2.71
3830 10317 8.503458 TTGATCCAAACAAATGAACAAACATT 57.497 26.923 0.00 0.00 41.43 2.71
3831 10318 8.503458 TGATCCAAACAAATGAACAAACATTT 57.497 26.923 0.00 0.00 46.85 2.32
3832 10319 8.954350 TGATCCAAACAAATGAACAAACATTTT 58.046 25.926 0.00 0.00 44.63 1.82
3843 10330 7.561237 TGAACAAACATTTTAAATAGCTCGC 57.439 32.000 0.00 0.00 0.00 5.03
3844 10331 7.367285 TGAACAAACATTTTAAATAGCTCGCT 58.633 30.769 0.00 0.00 0.00 4.93
3845 10332 8.508062 TGAACAAACATTTTAAATAGCTCGCTA 58.492 29.630 0.53 0.53 0.00 4.26
3846 10333 9.503427 GAACAAACATTTTAAATAGCTCGCTAT 57.497 29.630 5.63 5.63 40.63 2.97
3849 10336 9.107367 CAAACATTTTAAATAGCTCGCTATAGC 57.893 33.333 15.09 15.09 43.11 2.97
3850 10337 7.962964 ACATTTTAAATAGCTCGCTATAGCA 57.037 32.000 23.99 10.53 45.30 3.49
3851 10338 7.797819 ACATTTTAAATAGCTCGCTATAGCAC 58.202 34.615 23.99 12.65 45.30 4.40
3852 10339 6.448053 TTTTAAATAGCTCGCTATAGCACG 57.552 37.500 23.99 14.52 45.30 5.34
3853 10340 1.983972 AATAGCTCGCTATAGCACGC 58.016 50.000 23.99 22.52 45.30 5.34
3854 10341 1.169577 ATAGCTCGCTATAGCACGCT 58.830 50.000 29.35 29.35 45.30 5.07
3855 10342 1.804601 TAGCTCGCTATAGCACGCTA 58.195 50.000 27.81 27.81 45.30 4.26
3856 10343 1.169577 AGCTCGCTATAGCACGCTAT 58.830 50.000 27.04 15.45 45.30 2.97
3857 10344 2.357075 AGCTCGCTATAGCACGCTATA 58.643 47.619 27.04 15.99 45.30 1.31
3868 10355 8.689251 CTATAGCACGCTATAGCATTTAGAAA 57.311 34.615 25.42 2.45 46.26 2.52
3869 10356 7.962964 ATAGCACGCTATAGCATTTAGAAAA 57.037 32.000 23.99 1.16 42.21 2.29
3870 10357 6.292389 AGCACGCTATAGCATTTAGAAAAG 57.708 37.500 23.99 6.48 42.21 2.27
3871 10358 5.237344 AGCACGCTATAGCATTTAGAAAAGG 59.763 40.000 23.99 5.98 42.21 3.11
3872 10359 5.007724 GCACGCTATAGCATTTAGAAAAGGT 59.992 40.000 23.99 6.60 42.21 3.50
3873 10360 6.650372 CACGCTATAGCATTTAGAAAAGGTC 58.350 40.000 23.99 0.00 42.21 3.85
3874 10361 5.758784 ACGCTATAGCATTTAGAAAAGGTCC 59.241 40.000 23.99 0.00 42.21 4.46
3875 10362 5.107453 CGCTATAGCATTTAGAAAAGGTCCG 60.107 44.000 23.99 0.00 42.21 4.79
3876 10363 5.334182 GCTATAGCATTTAGAAAAGGTCCGC 60.334 44.000 20.01 0.00 41.59 5.54
3877 10364 2.092323 AGCATTTAGAAAAGGTCCGCC 58.908 47.619 0.00 0.00 0.00 6.13
3878 10365 1.202143 GCATTTAGAAAAGGTCCGCCG 60.202 52.381 0.00 0.00 40.50 6.46
3879 10366 1.092348 ATTTAGAAAAGGTCCGCCGC 58.908 50.000 0.00 0.00 40.50 6.53
3880 10367 0.035739 TTTAGAAAAGGTCCGCCGCT 59.964 50.000 0.00 0.00 40.50 5.52
3881 10368 0.896923 TTAGAAAAGGTCCGCCGCTA 59.103 50.000 0.00 0.00 40.50 4.26
3882 10369 0.896923 TAGAAAAGGTCCGCCGCTAA 59.103 50.000 0.00 0.00 40.50 3.09
3883 10370 0.391263 AGAAAAGGTCCGCCGCTAAG 60.391 55.000 0.00 0.00 40.50 2.18
3884 10371 0.390735 GAAAAGGTCCGCCGCTAAGA 60.391 55.000 0.00 0.00 40.50 2.10
3885 10372 0.391263 AAAAGGTCCGCCGCTAAGAG 60.391 55.000 0.00 0.00 40.50 2.85
3886 10373 2.240162 AAAGGTCCGCCGCTAAGAGG 62.240 60.000 0.00 0.00 40.50 3.69
3895 10382 3.619054 GCTAAGAGGCTTAGCGCG 58.381 61.111 19.61 0.00 38.12 6.86
3896 10383 2.590401 GCTAAGAGGCTTAGCGCGC 61.590 63.158 26.66 26.66 38.12 6.86
3897 10384 1.066587 CTAAGAGGCTTAGCGCGCT 59.933 57.895 38.01 38.01 40.44 5.92
3898 10385 0.311165 CTAAGAGGCTTAGCGCGCTA 59.689 55.000 35.48 35.48 40.44 4.26
3899 10386 0.959553 TAAGAGGCTTAGCGCGCTAT 59.040 50.000 38.51 25.42 40.44 2.97
3900 10387 0.105039 AAGAGGCTTAGCGCGCTATT 59.895 50.000 38.51 26.01 40.44 1.73
3901 10388 0.105039 AGAGGCTTAGCGCGCTATTT 59.895 50.000 38.51 24.06 40.44 1.40
3902 10389 1.340248 AGAGGCTTAGCGCGCTATTTA 59.660 47.619 38.51 24.25 40.44 1.40
3903 10390 2.132762 GAGGCTTAGCGCGCTATTTAA 58.867 47.619 38.51 25.53 40.44 1.52
3904 10391 2.542595 GAGGCTTAGCGCGCTATTTAAA 59.457 45.455 38.51 25.16 40.44 1.52
3905 10392 2.940410 AGGCTTAGCGCGCTATTTAAAA 59.060 40.909 38.51 24.43 40.44 1.52
3906 10393 3.033873 GGCTTAGCGCGCTATTTAAAAC 58.966 45.455 38.51 21.47 40.44 2.43
3907 10394 3.242641 GGCTTAGCGCGCTATTTAAAACT 60.243 43.478 38.51 14.50 40.44 2.66
3908 10395 4.025480 GGCTTAGCGCGCTATTTAAAACTA 60.025 41.667 38.51 20.65 40.44 2.24
3939 10426 1.515521 GGTTACAGTTTGCGCTGGCT 61.516 55.000 9.73 0.00 40.59 4.75
3943 10430 1.965930 CAGTTTGCGCTGGCTACCA 60.966 57.895 9.73 0.00 40.82 3.25
3956 10443 4.141869 GCTGGCTACCAAAATCATCCATTT 60.142 41.667 0.00 0.00 36.12 2.32
3958 10445 4.122046 GGCTACCAAAATCATCCATTTGC 58.878 43.478 0.00 0.00 34.69 3.68
3999 10486 0.805322 GCACGCTGTCTCATCAGGAG 60.805 60.000 0.00 0.00 45.49 3.69
4123 10632 1.739562 CCGCAGCTGTCTTCCTCAC 60.740 63.158 16.64 0.00 0.00 3.51
4124 10633 2.091112 CGCAGCTGTCTTCCTCACG 61.091 63.158 16.64 2.72 0.00 4.35
4127 10636 0.389166 CAGCTGTCTTCCTCACGTCC 60.389 60.000 5.25 0.00 0.00 4.79
4144 10653 5.365605 TCACGTCCTAACCTTCATATCCATT 59.634 40.000 0.00 0.00 0.00 3.16
4146 10655 5.365605 ACGTCCTAACCTTCATATCCATTCA 59.634 40.000 0.00 0.00 0.00 2.57
4171 10680 3.911964 CCATGCAACGTAAAACTAGCAAC 59.088 43.478 0.00 0.00 35.45 4.17
4183 10692 8.100306 CGTAAAACTAGCAACTACGTAAATCAG 58.900 37.037 0.00 0.00 32.68 2.90
4215 10724 3.691049 ACAATTCGGGCATAATTCACG 57.309 42.857 0.00 0.00 0.00 4.35
4217 10726 3.181501 ACAATTCGGGCATAATTCACGTG 60.182 43.478 9.94 9.94 0.00 4.49
4221 10730 2.143122 CGGGCATAATTCACGTGCTAT 58.857 47.619 11.67 3.79 38.83 2.97
4233 10742 0.172578 CGTGCTATCAGTCACCGGAA 59.827 55.000 9.46 0.00 0.00 4.30
4278 10787 6.789262 TCGCTGGACAGTACTAAATTACTAC 58.211 40.000 0.00 0.00 30.76 2.73
4331 10840 7.402054 TCTGATGATATTGGTTGTTGTTAGGT 58.598 34.615 0.00 0.00 0.00 3.08
4353 10862 5.279456 GGTTTTCAGCCAGGTAATCAACAAT 60.279 40.000 0.00 0.00 0.00 2.71
4397 10907 8.277918 ACAATAAAGAGCCAAGGAATAAGATCT 58.722 33.333 0.00 0.00 0.00 2.75
4505 11112 5.989777 ACACACAGTACTCTTCAAATGTACC 59.010 40.000 0.00 0.00 37.76 3.34
4570 11177 9.967346 GTATTTGCTAGTACATCTCTCACATAA 57.033 33.333 0.00 0.00 0.00 1.90
4595 11208 5.643348 TCAGGTGTACATAAAATGCAGTCTG 59.357 40.000 0.00 0.00 0.00 3.51
4768 11382 4.509600 CGAAGAACCATAAGATCCTTGAGC 59.490 45.833 0.00 0.00 0.00 4.26
4892 11506 9.277783 GACATATATTCCATTCTTAAGTGCTGT 57.722 33.333 1.63 0.00 0.00 4.40
4953 11574 4.946478 TTGGAAAAACACCCTGGTAATG 57.054 40.909 0.00 0.00 0.00 1.90
4970 11591 7.386299 CCTGGTAATGTATATCTGACTTTCTGC 59.614 40.741 0.00 0.00 0.00 4.26
5023 11652 2.336554 GTGGTGTCACATGCAACATC 57.663 50.000 5.12 4.51 43.13 3.06
5228 11863 4.085357 TGAGAGAAAAAGCAGGCAAGTA 57.915 40.909 0.00 0.00 0.00 2.24
5309 12251 3.377172 TCGACGATGCTATTCTCTGAACA 59.623 43.478 0.00 0.00 0.00 3.18
5319 12261 0.037326 TCTCTGAACATGTGGCGACC 60.037 55.000 0.00 0.00 0.00 4.79
5399 12358 2.288579 GCCGTACCATATCGACATTCCA 60.289 50.000 0.00 0.00 0.00 3.53
5402 12361 1.865865 ACCATATCGACATTCCACGC 58.134 50.000 0.00 0.00 0.00 5.34
5496 12458 3.490439 TCATGAAACTGACAGGAGCAA 57.510 42.857 7.51 0.00 0.00 3.91
5654 12759 3.733337 CTTGGGCGCTTTGAGATAGTAT 58.267 45.455 7.64 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.164647 GTGTGCATGTCGTGAAGCTC 59.835 55.000 0.00 0.00 0.00 4.09
20 21 1.132500 GGCCCTACAATGCTAGAGGT 58.868 55.000 0.00 0.00 0.00 3.85
38 39 4.809426 GGTTGTCATCTAAAGTATGGTCGG 59.191 45.833 0.00 0.00 0.00 4.79
51 52 1.750399 GCATGGGCGGTTGTCATCT 60.750 57.895 0.00 0.00 0.00 2.90
65 66 1.856629 AGATTGTTTCTGGGGGCATG 58.143 50.000 0.00 0.00 31.79 4.06
127 128 0.251341 ATGGGACTGTGGCCAAACTC 60.251 55.000 7.24 0.00 0.00 3.01
129 130 1.586154 CGATGGGACTGTGGCCAAAC 61.586 60.000 7.24 0.00 0.00 2.93
134 135 1.463674 AATTTCGATGGGACTGTGGC 58.536 50.000 0.00 0.00 0.00 5.01
141 142 7.158021 ACTTGCAAAAATTAATTTCGATGGGA 58.842 30.769 13.68 0.00 0.00 4.37
148 149 8.003784 CGACAAGGACTTGCAAAAATTAATTTC 58.996 33.333 13.68 2.91 44.03 2.17
150 151 6.983890 ACGACAAGGACTTGCAAAAATTAATT 59.016 30.769 11.73 0.00 44.03 1.40
179 180 1.811266 CGAAGCTGTCATGGACCCG 60.811 63.158 0.00 0.00 0.00 5.28
208 209 7.549488 CCGGAGAAGAAACATAGAGTTAAACAT 59.451 37.037 0.00 0.00 40.26 2.71
211 212 7.001099 ACCGGAGAAGAAACATAGAGTTAAA 57.999 36.000 9.46 0.00 40.26 1.52
219 220 6.656902 TCTCTACTACCGGAGAAGAAACATA 58.343 40.000 9.46 0.00 35.91 2.29
220 221 5.507637 TCTCTACTACCGGAGAAGAAACAT 58.492 41.667 9.46 0.00 35.91 2.71
232 233 7.674471 TGATGAACTATGATCTCTACTACCG 57.326 40.000 0.00 0.00 0.00 4.02
238 240 8.228206 AGGTACCTTGATGAACTATGATCTCTA 58.772 37.037 9.21 0.00 0.00 2.43
286 288 1.390463 GAGGAGTTTCAATCGTCACGC 59.610 52.381 0.00 0.00 33.00 5.34
287 289 2.408704 GTGAGGAGTTTCAATCGTCACG 59.591 50.000 10.23 0.00 46.40 4.35
291 293 3.380479 TTCGTGAGGAGTTTCAATCGT 57.620 42.857 0.00 0.00 0.00 3.73
338 340 3.728076 TGTACTTGTCACACTCTGGTC 57.272 47.619 0.00 0.00 0.00 4.02
339 341 3.305403 CGATGTACTTGTCACACTCTGGT 60.305 47.826 0.00 0.00 0.00 4.00
341 343 3.914966 GTCGATGTACTTGTCACACTCTG 59.085 47.826 0.00 0.00 0.00 3.35
346 348 5.559991 GCAATTTGTCGATGTACTTGTCACA 60.560 40.000 0.00 0.00 0.00 3.58
358 360 3.071874 TCCCAAGAGCAATTTGTCGAT 57.928 42.857 0.00 0.00 0.00 3.59
391 393 2.472695 AGCTTTGGATGTTCACGCTA 57.527 45.000 0.00 0.00 0.00 4.26
409 411 1.539827 GATGAAACCACGAACCCCAAG 59.460 52.381 0.00 0.00 0.00 3.61
447 449 5.934625 TGAGCTTTAAAGGAAGATGACTCAC 59.065 40.000 16.78 0.00 0.00 3.51
469 471 2.634453 TCAGATGGCTCAGAGTGTTTGA 59.366 45.455 0.00 0.00 0.00 2.69
480 482 1.338484 TGCTTGACTGTCAGATGGCTC 60.338 52.381 10.77 0.00 0.00 4.70
488 490 3.316029 CACCATTCTTTGCTTGACTGTCA 59.684 43.478 6.36 6.36 0.00 3.58
490 492 2.035066 GCACCATTCTTTGCTTGACTGT 59.965 45.455 0.00 0.00 35.74 3.55
508 510 2.478370 CGATGTGGTTGATTCATGGCAC 60.478 50.000 0.00 0.00 0.00 5.01
509 511 1.744522 CGATGTGGTTGATTCATGGCA 59.255 47.619 0.00 0.00 0.00 4.92
510 512 1.534595 GCGATGTGGTTGATTCATGGC 60.535 52.381 0.00 0.00 36.52 4.40
522 524 1.239296 CCCCATATGCAGCGATGTGG 61.239 60.000 1.22 1.25 35.03 4.17
527 529 2.203195 GTGCCCCATATGCAGCGA 60.203 61.111 9.74 0.00 39.87 4.93
556 558 0.884259 TGTCGGTTGTGGAGCATGTG 60.884 55.000 0.00 0.00 0.00 3.21
576 578 6.493449 TCTGATTTTCAATCGTGCATGTAA 57.507 33.333 5.68 0.00 0.00 2.41
583 585 5.969435 CACATCCATCTGATTTTCAATCGTG 59.031 40.000 0.00 0.00 0.00 4.35
588 590 4.381185 GCAGCACATCCATCTGATTTTCAA 60.381 41.667 0.00 0.00 0.00 2.69
595 597 0.616891 AGTGCAGCACATCCATCTGA 59.383 50.000 27.35 0.00 36.74 3.27
596 598 1.460504 AAGTGCAGCACATCCATCTG 58.539 50.000 27.35 0.00 36.74 2.90
608 610 4.318332 TCCACTCATAGAACAAAGTGCAG 58.682 43.478 0.00 0.00 38.21 4.41
612 614 4.018960 AGCCATCCACTCATAGAACAAAGT 60.019 41.667 0.00 0.00 0.00 2.66
662 680 3.988976 AAAGAAGAGTCCTGCTATGCA 57.011 42.857 0.00 0.00 36.92 3.96
670 688 7.607250 CAGAAGTGTGTATAAAGAAGAGTCCT 58.393 38.462 0.00 0.00 0.00 3.85
671 689 6.311690 GCAGAAGTGTGTATAAAGAAGAGTCC 59.688 42.308 0.00 0.00 0.00 3.85
682 700 7.426606 TTTATAGTGGGCAGAAGTGTGTATA 57.573 36.000 0.00 0.00 0.00 1.47
688 706 3.947834 CCCTTTTATAGTGGGCAGAAGTG 59.052 47.826 0.00 0.00 33.88 3.16
689 707 3.850173 TCCCTTTTATAGTGGGCAGAAGT 59.150 43.478 0.00 0.00 40.69 3.01
692 710 2.777692 CCTCCCTTTTATAGTGGGCAGA 59.222 50.000 0.00 0.00 40.69 4.26
732 755 9.581289 TGTATCCCTCAAAATTTCAGACTTTTA 57.419 29.630 0.00 0.00 0.00 1.52
737 760 9.710900 AAAAATGTATCCCTCAAAATTTCAGAC 57.289 29.630 0.00 0.00 0.00 3.51
765 788 7.831691 TGTATCCCTCAAAACTGAAATGAAA 57.168 32.000 0.00 0.00 0.00 2.69
767 790 8.421249 AAATGTATCCCTCAAAACTGAAATGA 57.579 30.769 0.00 0.00 0.00 2.57
768 791 9.492973 AAAAATGTATCCCTCAAAACTGAAATG 57.507 29.630 0.00 0.00 0.00 2.32
801 2549 9.981460 ACTTCATTTATATATCCCTCAAATCCC 57.019 33.333 0.00 0.00 0.00 3.85
816 2606 5.935789 GCCCGGTATGCTTACTTCATTTATA 59.064 40.000 0.00 0.00 0.00 0.98
826 2616 2.280592 CCGGCCCGGTATGCTTAC 60.281 66.667 15.86 1.15 42.73 2.34
850 2641 1.303317 CTTTGGGCCGGCTACAGTT 60.303 57.895 28.56 0.00 0.00 3.16
873 2664 0.818040 ATTATCGTCTTTGGGCCGGC 60.818 55.000 21.18 21.18 0.00 6.13
874 2665 1.602377 GAATTATCGTCTTTGGGCCGG 59.398 52.381 0.00 0.00 0.00 6.13
875 2666 2.561569 AGAATTATCGTCTTTGGGCCG 58.438 47.619 0.00 0.00 0.00 6.13
876 2667 4.200092 AGAAGAATTATCGTCTTTGGGCC 58.800 43.478 0.00 0.00 40.88 5.80
883 2674 7.654022 AGAGGAAGAAGAAGAATTATCGTCT 57.346 36.000 4.14 4.14 44.82 4.18
884 2675 7.436970 GGAAGAGGAAGAAGAAGAATTATCGTC 59.563 40.741 0.30 0.30 34.67 4.20
885 2676 7.269316 GGAAGAGGAAGAAGAAGAATTATCGT 58.731 38.462 0.00 0.00 0.00 3.73
886 2677 6.704050 GGGAAGAGGAAGAAGAAGAATTATCG 59.296 42.308 0.00 0.00 0.00 2.92
904 2695 1.001641 CAACTGCCCAGGGGAAGAG 60.002 63.158 19.72 7.22 43.85 2.85
999 2798 3.810896 GGTGGCGGCCGTTTCATC 61.811 66.667 28.70 18.72 0.00 2.92
1082 2884 0.108138 CTCATTCCGCTTCTTCCCGT 60.108 55.000 0.00 0.00 0.00 5.28
1247 3049 2.481969 GCAACAGACAGACAGACAGACA 60.482 50.000 0.00 0.00 0.00 3.41
1359 3161 6.090088 TCCGCATTCAAATTTAATCAAAACCG 59.910 34.615 0.00 0.00 0.00 4.44
1372 3174 6.315393 ACGAAATTAGTAGTCCGCATTCAAAT 59.685 34.615 0.00 0.00 0.00 2.32
1382 3184 9.410556 TGTGTTTTAGTACGAAATTAGTAGTCC 57.589 33.333 1.80 0.00 0.00 3.85
1388 3190 8.530269 ACTCCTGTGTTTTAGTACGAAATTAG 57.470 34.615 1.80 0.04 0.00 1.73
1399 3201 9.581099 AACAACAAATTTACTCCTGTGTTTTAG 57.419 29.630 0.00 0.00 0.00 1.85
1401 3203 8.840833 AAACAACAAATTTACTCCTGTGTTTT 57.159 26.923 0.00 0.00 0.00 2.43
1403 3205 9.581099 CTAAAACAACAAATTTACTCCTGTGTT 57.419 29.630 0.00 0.00 0.00 3.32
1404 3206 8.194769 CCTAAAACAACAAATTTACTCCTGTGT 58.805 33.333 0.00 0.00 0.00 3.72
1405 3207 8.410141 TCCTAAAACAACAAATTTACTCCTGTG 58.590 33.333 0.00 0.00 0.00 3.66
1406 3208 8.410912 GTCCTAAAACAACAAATTTACTCCTGT 58.589 33.333 0.00 0.00 0.00 4.00
1449 3273 4.664688 AGGGGACAACATGAGAAGATTT 57.335 40.909 0.00 0.00 0.00 2.17
1461 3285 3.279434 CATAGCTAACCAAGGGGACAAC 58.721 50.000 0.00 0.00 38.05 3.32
1476 3300 2.166459 TGCGCTAAGTGAGAACATAGCT 59.834 45.455 9.73 0.00 38.84 3.32
1484 3308 2.812358 TCAAACTGCGCTAAGTGAGA 57.188 45.000 9.73 3.76 0.00 3.27
1495 3319 4.973396 TCGTCAATTCATGATCAAACTGC 58.027 39.130 0.00 0.00 40.97 4.40
1496 3320 6.033196 GCTTTCGTCAATTCATGATCAAACTG 59.967 38.462 0.00 0.00 40.97 3.16
1515 3341 3.733224 CCTCAGATTACGATGAGCTTTCG 59.267 47.826 15.86 15.86 41.33 3.46
1532 3358 2.262774 ATCTTTCCCAGCGCCCTCAG 62.263 60.000 2.29 0.00 0.00 3.35
1546 3372 4.082125 GTTGAACCCTGATGACCATCTTT 58.918 43.478 10.87 0.57 38.60 2.52
1547 3373 3.331889 AGTTGAACCCTGATGACCATCTT 59.668 43.478 10.87 0.00 38.60 2.40
1551 3377 2.976185 TGTAGTTGAACCCTGATGACCA 59.024 45.455 0.00 0.00 0.00 4.02
1557 3383 4.622933 CGGAATCATGTAGTTGAACCCTGA 60.623 45.833 0.00 0.00 0.00 3.86
1559 3385 3.517901 TCGGAATCATGTAGTTGAACCCT 59.482 43.478 0.00 0.00 0.00 4.34
1567 3394 6.823182 TCATCAATGTTTCGGAATCATGTAGT 59.177 34.615 13.46 0.00 0.00 2.73
1579 3414 7.809331 TCTTTCTCCAATTTCATCAATGTTTCG 59.191 33.333 0.00 0.00 0.00 3.46
1608 3443 2.910688 TCTTCAAGTCTGAACGCCTT 57.089 45.000 0.00 0.00 36.62 4.35
1609 3444 2.037772 ACATCTTCAAGTCTGAACGCCT 59.962 45.455 0.00 0.00 36.62 5.52
1610 3445 2.417719 ACATCTTCAAGTCTGAACGCC 58.582 47.619 0.00 0.00 36.62 5.68
1611 3446 5.786401 AATACATCTTCAAGTCTGAACGC 57.214 39.130 0.00 0.00 36.62 4.84
1658 3495 5.646606 TGTCCACAAGAACAAAAACTTAGC 58.353 37.500 0.00 0.00 0.00 3.09
1674 3511 4.639078 TTCCATGAGAAATCTGTCCACA 57.361 40.909 0.00 0.00 0.00 4.17
1708 3545 4.691685 TGCCAAATTGAACATGAGCAATTC 59.308 37.500 21.68 14.30 42.17 2.17
1710 3547 4.274602 TGCCAAATTGAACATGAGCAAT 57.725 36.364 0.00 5.85 36.35 3.56
1714 3551 5.343058 CGTTAGTTGCCAAATTGAACATGAG 59.657 40.000 0.00 0.00 0.00 2.90
1758 3596 9.295214 CTATATGATTTCAGCTATCAGGTAACG 57.705 37.037 4.12 0.00 46.39 3.18
1808 3646 1.808411 TAAGCAGCAACTACCAGTGC 58.192 50.000 0.00 0.00 0.00 4.40
1810 3648 6.940298 TCTTTTATTAAGCAGCAACTACCAGT 59.060 34.615 0.00 0.00 0.00 4.00
1813 3651 6.094186 AGCTCTTTTATTAAGCAGCAACTACC 59.906 38.462 0.00 0.00 38.51 3.18
1817 3655 5.703876 ACAGCTCTTTTATTAAGCAGCAAC 58.296 37.500 0.00 0.00 38.51 4.17
1831 3669 3.565902 GCAAGTACCAGAAACAGCTCTTT 59.434 43.478 0.00 0.00 0.00 2.52
1834 3672 1.807142 GGCAAGTACCAGAAACAGCTC 59.193 52.381 0.00 0.00 0.00 4.09
1836 3674 1.604604 TGGCAAGTACCAGAAACAGC 58.395 50.000 0.00 0.00 33.75 4.40
1861 3699 8.614469 AAAAATCTTTCACAAACAGGTCAAAA 57.386 26.923 0.00 0.00 0.00 2.44
1909 3757 4.428294 AAGCAGCACATATCATACAGGT 57.572 40.909 0.00 0.00 0.00 4.00
1913 3761 5.739752 TGACAAAGCAGCACATATCATAC 57.260 39.130 0.00 0.00 0.00 2.39
1933 3781 6.658816 ACATTACTGCAATACAAACCAGATGA 59.341 34.615 0.00 0.00 0.00 2.92
2002 3855 3.238597 AGAACTCCTTCTGCTTCTCTGT 58.761 45.455 0.00 0.00 35.24 3.41
2038 3891 5.862323 TCGACTTCTTGTACTTGCTAATCAC 59.138 40.000 0.00 0.00 0.00 3.06
2151 4004 9.398170 CACTTTGGTCAAATTATCACTTACAAG 57.602 33.333 0.00 0.00 0.00 3.16
2154 4007 8.021396 GTCCACTTTGGTCAAATTATCACTTAC 58.979 37.037 0.00 0.00 39.03 2.34
2180 4033 1.746615 CCCATCACAACCTCCGCTG 60.747 63.158 0.00 0.00 0.00 5.18
2187 4040 1.134946 GTGCATAAGCCCATCACAACC 59.865 52.381 0.00 0.00 41.13 3.77
2222 4075 9.657419 CCCTAAAAGCTATTCACATTTTCATTT 57.343 29.630 0.00 0.00 0.00 2.32
2231 4084 4.919774 TGTCCCCTAAAAGCTATTCACA 57.080 40.909 0.00 0.00 0.00 3.58
2239 4092 0.251608 TGGCCTTGTCCCCTAAAAGC 60.252 55.000 3.32 0.00 0.00 3.51
2262 4115 3.820467 TGTCAAGTTATGGCAAGTCTTGG 59.180 43.478 14.40 0.00 41.69 3.61
2271 4124 7.088589 ACAAGATACAATGTCAAGTTATGGC 57.911 36.000 0.00 0.00 0.00 4.40
2276 4129 9.561069 AGAACTAACAAGATACAATGTCAAGTT 57.439 29.630 0.00 0.00 37.89 2.66
2279 4132 9.990360 TGTAGAACTAACAAGATACAATGTCAA 57.010 29.630 0.00 0.00 0.00 3.18
2280 4133 9.419297 GTGTAGAACTAACAAGATACAATGTCA 57.581 33.333 0.00 0.00 0.00 3.58
2281 4134 8.584600 CGTGTAGAACTAACAAGATACAATGTC 58.415 37.037 0.00 0.00 0.00 3.06
2282 4135 8.086522 ACGTGTAGAACTAACAAGATACAATGT 58.913 33.333 0.00 0.00 31.79 2.71
2283 4136 8.373256 CACGTGTAGAACTAACAAGATACAATG 58.627 37.037 7.58 0.00 31.79 2.82
2284 4137 8.086522 ACACGTGTAGAACTAACAAGATACAAT 58.913 33.333 21.98 0.00 31.79 2.71
2285 4138 7.428020 ACACGTGTAGAACTAACAAGATACAA 58.572 34.615 21.98 0.00 31.79 2.41
2286 4139 6.973843 ACACGTGTAGAACTAACAAGATACA 58.026 36.000 21.98 0.00 31.79 2.29
2287 4140 8.017373 TGTACACGTGTAGAACTAACAAGATAC 58.983 37.037 28.02 13.55 31.79 2.24
2297 4150 6.814506 AACTATCTGTACACGTGTAGAACT 57.185 37.500 28.02 17.80 0.00 3.01
2324 4177 2.617250 GCGAATTGCATCAAGACACA 57.383 45.000 0.00 0.00 45.45 3.72
2341 4194 2.009774 CACCTCCTTCCTACAAATGCG 58.990 52.381 0.00 0.00 0.00 4.73
2342 4195 1.745653 GCACCTCCTTCCTACAAATGC 59.254 52.381 0.00 0.00 0.00 3.56
2348 4201 3.031736 TGTATCAGCACCTCCTTCCTAC 58.968 50.000 0.00 0.00 0.00 3.18
2349 4202 3.398318 TGTATCAGCACCTCCTTCCTA 57.602 47.619 0.00 0.00 0.00 2.94
2367 4220 0.387565 GGTTTTGGCACATCCGTTGT 59.612 50.000 0.00 0.00 39.30 3.32
2370 4223 0.753479 TGTGGTTTTGGCACATCCGT 60.753 50.000 0.00 0.00 39.30 4.69
2408 4261 5.129634 TCCACATTCAAGCTTTGTGAAGTA 58.870 37.500 24.71 9.45 42.59 2.24
2448 4301 2.755655 TCTTTGCCTTCTCGTCCTCTAG 59.244 50.000 0.00 0.00 0.00 2.43
2495 4348 2.223803 TCTCTCGCTCCTCCTTCTTT 57.776 50.000 0.00 0.00 0.00 2.52
2607 4460 2.233431 AGCTTTCTAGTGCAGTCTCCAG 59.767 50.000 0.00 0.00 0.00 3.86
2758 4611 7.278135 TGACTAGAGATTCCATTGAAATCCAG 58.722 38.462 0.00 0.00 33.32 3.86
2768 4621 7.015098 CACCAGTATCTTGACTAGAGATTCCAT 59.985 40.741 0.00 0.00 36.02 3.41
2803 4656 6.535150 CGGAAGCTCTAACAGAAACATAATGA 59.465 38.462 0.00 0.00 0.00 2.57
2806 4659 5.046878 TCCGGAAGCTCTAACAGAAACATAA 60.047 40.000 0.00 0.00 0.00 1.90
2821 4674 0.539051 CACTCTCCAATCCGGAAGCT 59.461 55.000 9.01 0.00 45.75 3.74
2827 4680 0.824109 TGGCTACACTCTCCAATCCG 59.176 55.000 0.00 0.00 0.00 4.18
2863 4716 1.534235 ACAGTGCTCTCCGACCCTT 60.534 57.895 0.00 0.00 0.00 3.95
2885 4738 9.436957 TTTAAAACTCTGCCTAAGATTAGACTG 57.563 33.333 1.08 0.00 33.29 3.51
2922 4775 5.448632 GCAGTGGCAAAACGTATAATTAGCT 60.449 40.000 0.00 0.00 40.72 3.32
2932 4785 1.437160 CAAGGCAGTGGCAAAACGT 59.563 52.632 20.04 0.00 43.71 3.99
2939 4792 0.319297 CAGAAAAGCAAGGCAGTGGC 60.319 55.000 9.02 9.02 40.13 5.01
2965 4818 5.215160 GCTTAATTGCGCATTAGCTTATGT 58.785 37.500 12.75 0.00 39.10 2.29
3049 4902 8.917088 AGCTATCATACAAATTTTAGTGGCATT 58.083 29.630 0.00 0.00 0.00 3.56
3053 4906 9.941664 CTCAAGCTATCATACAAATTTTAGTGG 57.058 33.333 0.00 0.00 0.00 4.00
3063 4916 5.512060 GGCTGGATCTCAAGCTATCATACAA 60.512 44.000 6.53 0.00 0.00 2.41
3162 5016 1.079197 CACGGCCATCACTGCTACA 60.079 57.895 2.24 0.00 0.00 2.74
3183 5037 3.842925 TTGGTCTCGCACAAGGGGC 62.843 63.158 0.00 0.00 0.00 5.80
3184 5038 1.672356 CTTGGTCTCGCACAAGGGG 60.672 63.158 0.00 0.00 40.20 4.79
3185 5039 3.972227 CTTGGTCTCGCACAAGGG 58.028 61.111 0.00 0.00 40.20 3.95
3187 5041 1.081892 CATCCTTGGTCTCGCACAAG 58.918 55.000 0.00 0.00 42.77 3.16
3188 5042 0.396435 ACATCCTTGGTCTCGCACAA 59.604 50.000 0.00 0.00 0.00 3.33
3190 5044 2.000447 GTTACATCCTTGGTCTCGCAC 59.000 52.381 0.00 0.00 0.00 5.34
3191 5045 1.899814 AGTTACATCCTTGGTCTCGCA 59.100 47.619 0.00 0.00 0.00 5.10
3192 5046 2.271800 CAGTTACATCCTTGGTCTCGC 58.728 52.381 0.00 0.00 0.00 5.03
3194 5048 3.334583 TGCAGTTACATCCTTGGTCTC 57.665 47.619 0.00 0.00 0.00 3.36
3196 5050 3.412386 ACTTGCAGTTACATCCTTGGTC 58.588 45.455 0.00 0.00 0.00 4.02
3197 5051 3.508845 ACTTGCAGTTACATCCTTGGT 57.491 42.857 0.00 0.00 0.00 3.67
3198 5052 3.820467 TGAACTTGCAGTTACATCCTTGG 59.180 43.478 2.17 0.00 38.80 3.61
3199 5053 5.437289 TTGAACTTGCAGTTACATCCTTG 57.563 39.130 2.17 0.00 38.80 3.61
3200 5054 4.022849 GCTTGAACTTGCAGTTACATCCTT 60.023 41.667 2.17 0.00 38.80 3.36
3201 5055 3.503748 GCTTGAACTTGCAGTTACATCCT 59.496 43.478 2.17 0.00 38.80 3.24
3202 5056 3.366374 GGCTTGAACTTGCAGTTACATCC 60.366 47.826 2.17 0.27 38.80 3.51
3203 5057 3.366374 GGGCTTGAACTTGCAGTTACATC 60.366 47.826 2.17 0.00 38.80 3.06
3204 5058 2.558359 GGGCTTGAACTTGCAGTTACAT 59.442 45.455 2.17 0.00 38.80 2.29
3205 5059 1.953686 GGGCTTGAACTTGCAGTTACA 59.046 47.619 2.17 1.30 38.80 2.41
3206 5060 2.226674 GAGGGCTTGAACTTGCAGTTAC 59.773 50.000 2.17 0.00 38.80 2.50
3208 5062 1.322442 GAGGGCTTGAACTTGCAGTT 58.678 50.000 1.82 1.82 41.95 3.16
3226 5080 2.125552 CGATGGCTGTCTTGCGGA 60.126 61.111 0.00 0.00 0.00 5.54
3272 5696 2.997315 TCCTCACCTGCACCTCCG 60.997 66.667 0.00 0.00 0.00 4.63
3273 5697 2.664081 CCTCCTCACCTGCACCTCC 61.664 68.421 0.00 0.00 0.00 4.30
3304 5728 1.226491 GATGGCTTGATGCACACGC 60.226 57.895 8.55 8.55 45.15 5.34
3314 5738 1.271543 TGTCTCCAGGTTGATGGCTTG 60.272 52.381 0.00 0.00 40.41 4.01
3315 5739 1.067295 TGTCTCCAGGTTGATGGCTT 58.933 50.000 0.00 0.00 40.41 4.35
3317 5741 1.168714 GTTGTCTCCAGGTTGATGGC 58.831 55.000 0.00 0.00 40.41 4.40
3318 5742 2.816087 CAAGTTGTCTCCAGGTTGATGG 59.184 50.000 0.00 0.00 42.11 3.51
3319 5743 2.227388 GCAAGTTGTCTCCAGGTTGATG 59.773 50.000 4.48 0.00 0.00 3.07
3320 5744 2.508526 GCAAGTTGTCTCCAGGTTGAT 58.491 47.619 4.48 0.00 0.00 2.57
3321 5745 1.810031 CGCAAGTTGTCTCCAGGTTGA 60.810 52.381 4.48 0.00 0.00 3.18
3333 5757 1.478622 CCACAAAACGGCGCAAGTTG 61.479 55.000 18.80 14.13 41.68 3.16
3334 5758 1.226831 CCACAAAACGGCGCAAGTT 60.227 52.632 10.83 12.52 41.68 2.66
3336 5760 1.003262 CATCCACAAAACGGCGCAAG 61.003 55.000 10.83 4.90 43.44 4.01
3339 5763 1.154225 CTCATCCACAAAACGGCGC 60.154 57.895 6.90 0.00 0.00 6.53
3340 5764 1.234615 ACCTCATCCACAAAACGGCG 61.235 55.000 4.80 4.80 0.00 6.46
3341 5765 0.240945 CACCTCATCCACAAAACGGC 59.759 55.000 0.00 0.00 0.00 5.68
3363 5788 3.379445 TCCACCTCCGGACGAAGC 61.379 66.667 0.00 0.00 0.00 3.86
3474 7244 1.515521 GGGGAAACACAAGTCGCCAG 61.516 60.000 2.20 0.00 44.25 4.85
3507 7799 0.036732 TGAACTGCAGCAGGGTAAGG 59.963 55.000 26.38 0.27 35.51 2.69
3561 7853 1.215382 CGAATCGTCCAGAGGCACA 59.785 57.895 0.00 0.00 0.00 4.57
3573 7865 1.215655 GGCTCCGAATGACCGAATCG 61.216 60.000 0.00 0.00 36.39 3.34
3581 7873 2.481276 CGTGAATAGTGGCTCCGAATGA 60.481 50.000 0.00 0.00 0.00 2.57
3582 7874 1.860950 CGTGAATAGTGGCTCCGAATG 59.139 52.381 0.00 0.00 0.00 2.67
3583 7875 1.202533 CCGTGAATAGTGGCTCCGAAT 60.203 52.381 0.00 0.00 0.00 3.34
3584 7876 0.174845 CCGTGAATAGTGGCTCCGAA 59.825 55.000 0.00 0.00 0.00 4.30
3585 7877 1.813859 CCGTGAATAGTGGCTCCGA 59.186 57.895 0.00 0.00 0.00 4.55
3586 7878 1.883084 GCCGTGAATAGTGGCTCCG 60.883 63.158 0.00 0.00 45.40 4.63
3587 7879 4.126524 GCCGTGAATAGTGGCTCC 57.873 61.111 0.00 0.00 45.40 4.70
3593 7885 3.319405 CAGGACTATCTGCCGTGAATAGT 59.681 47.826 0.00 0.00 0.00 2.12
3601 7893 1.107114 ACTGTCAGGACTATCTGCCG 58.893 55.000 4.53 0.00 34.91 5.69
3643 7935 1.875576 GCATAAGATCCCCTGACGCAG 60.876 57.143 0.00 0.52 0.00 5.18
3690 10177 4.041567 TCCTGATTGCCTTCACAGTTCTAA 59.958 41.667 0.00 0.00 0.00 2.10
3706 10193 3.715315 TCTCATTGCTCCATCTCCTGATT 59.285 43.478 0.00 0.00 0.00 2.57
3734 10221 6.072119 GGCTATTTAAAACAGTGCAGGTTACT 60.072 38.462 4.27 0.00 0.00 2.24
3735 10222 6.090783 GGCTATTTAAAACAGTGCAGGTTAC 58.909 40.000 4.27 0.00 0.00 2.50
3736 10223 5.184287 GGGCTATTTAAAACAGTGCAGGTTA 59.816 40.000 4.27 0.00 0.00 2.85
3737 10224 4.021456 GGGCTATTTAAAACAGTGCAGGTT 60.021 41.667 0.00 0.00 0.00 3.50
3738 10225 3.509967 GGGCTATTTAAAACAGTGCAGGT 59.490 43.478 0.00 0.00 0.00 4.00
3739 10226 3.427503 CGGGCTATTTAAAACAGTGCAGG 60.428 47.826 0.00 0.00 0.00 4.85
3740 10227 3.758300 CGGGCTATTTAAAACAGTGCAG 58.242 45.455 0.00 0.00 0.00 4.41
3741 10228 2.094957 GCGGGCTATTTAAAACAGTGCA 60.095 45.455 0.00 0.00 0.00 4.57
3742 10229 2.163613 AGCGGGCTATTTAAAACAGTGC 59.836 45.455 0.00 0.20 0.00 4.40
3743 10230 5.751243 ATAGCGGGCTATTTAAAACAGTG 57.249 39.130 7.36 0.00 35.92 3.66
3744 10231 5.469084 GCTATAGCGGGCTATTTAAAACAGT 59.531 40.000 17.49 0.00 39.65 3.55
3745 10232 5.928153 GCTATAGCGGGCTATTTAAAACAG 58.072 41.667 17.49 8.76 39.65 3.16
3746 10233 5.934935 GCTATAGCGGGCTATTTAAAACA 57.065 39.130 17.49 0.00 39.65 2.83
3771 10258 6.985268 CGCAAGACCTTCTGTGCTATAGCA 62.985 50.000 23.52 23.52 46.15 3.49
3772 10259 2.869192 GCAAGACCTTCTGTGCTATAGC 59.131 50.000 18.18 18.18 42.50 2.97
3773 10260 3.119291 CGCAAGACCTTCTGTGCTATAG 58.881 50.000 0.00 0.00 43.02 1.31
3774 10261 2.738643 GCGCAAGACCTTCTGTGCTATA 60.739 50.000 0.30 0.00 43.02 1.31
3775 10262 2.009042 GCGCAAGACCTTCTGTGCTAT 61.009 52.381 0.30 0.00 43.02 2.97
3776 10263 0.670546 GCGCAAGACCTTCTGTGCTA 60.671 55.000 0.30 0.00 43.02 3.49
3777 10264 1.963338 GCGCAAGACCTTCTGTGCT 60.963 57.895 0.30 0.00 43.02 4.40
3778 10265 0.670546 TAGCGCAAGACCTTCTGTGC 60.671 55.000 11.47 0.00 43.02 4.57
3779 10266 1.728971 CTTAGCGCAAGACCTTCTGTG 59.271 52.381 11.47 0.00 43.02 3.66
3780 10267 1.618837 TCTTAGCGCAAGACCTTCTGT 59.381 47.619 11.47 0.00 38.39 3.41
3781 10268 2.094494 TCTCTTAGCGCAAGACCTTCTG 60.094 50.000 11.47 4.34 38.39 3.02
3782 10269 2.094442 GTCTCTTAGCGCAAGACCTTCT 60.094 50.000 11.47 0.00 38.39 2.85
3783 10270 2.094442 AGTCTCTTAGCGCAAGACCTTC 60.094 50.000 21.13 11.40 40.21 3.46
3784 10271 1.896465 AGTCTCTTAGCGCAAGACCTT 59.104 47.619 21.13 7.87 40.21 3.50
3785 10272 1.551452 AGTCTCTTAGCGCAAGACCT 58.449 50.000 21.13 14.93 40.21 3.85
3786 10273 2.371910 AAGTCTCTTAGCGCAAGACC 57.628 50.000 21.13 13.52 40.21 3.85
3787 10274 3.318017 TCAAAGTCTCTTAGCGCAAGAC 58.682 45.455 11.47 16.26 38.39 3.01
3788 10275 3.660501 TCAAAGTCTCTTAGCGCAAGA 57.339 42.857 11.47 15.40 41.10 3.02
3789 10276 3.308323 GGATCAAAGTCTCTTAGCGCAAG 59.692 47.826 11.47 11.67 35.38 4.01
3790 10277 3.262420 GGATCAAAGTCTCTTAGCGCAA 58.738 45.455 11.47 0.50 0.00 4.85
3791 10278 2.233676 TGGATCAAAGTCTCTTAGCGCA 59.766 45.455 11.47 0.00 0.00 6.09
3792 10279 2.893637 TGGATCAAAGTCTCTTAGCGC 58.106 47.619 0.00 0.00 0.00 5.92
3793 10280 4.690748 TGTTTGGATCAAAGTCTCTTAGCG 59.309 41.667 0.00 0.00 33.82 4.26
3794 10281 6.560253 TTGTTTGGATCAAAGTCTCTTAGC 57.440 37.500 0.00 0.00 33.82 3.09
3795 10282 8.786898 TCATTTGTTTGGATCAAAGTCTCTTAG 58.213 33.333 0.00 0.00 38.02 2.18
3796 10283 8.690203 TCATTTGTTTGGATCAAAGTCTCTTA 57.310 30.769 0.00 0.00 38.02 2.10
3797 10284 7.587037 TCATTTGTTTGGATCAAAGTCTCTT 57.413 32.000 0.00 0.00 38.02 2.85
3798 10285 7.068593 TGTTCATTTGTTTGGATCAAAGTCTCT 59.931 33.333 0.00 0.00 38.02 3.10
3799 10286 7.202526 TGTTCATTTGTTTGGATCAAAGTCTC 58.797 34.615 0.00 0.00 38.02 3.36
3800 10287 7.111247 TGTTCATTTGTTTGGATCAAAGTCT 57.889 32.000 0.00 0.00 38.02 3.24
3801 10288 7.769272 TTGTTCATTTGTTTGGATCAAAGTC 57.231 32.000 0.00 0.00 38.02 3.01
3802 10289 7.605691 TGTTTGTTCATTTGTTTGGATCAAAGT 59.394 29.630 0.00 0.00 38.02 2.66
3803 10290 7.972527 TGTTTGTTCATTTGTTTGGATCAAAG 58.027 30.769 0.00 0.00 38.02 2.77
3804 10291 7.912056 TGTTTGTTCATTTGTTTGGATCAAA 57.088 28.000 0.00 0.00 38.77 2.69
3805 10292 8.503458 AATGTTTGTTCATTTGTTTGGATCAA 57.497 26.923 0.00 0.00 34.86 2.57
3806 10293 8.503458 AAATGTTTGTTCATTTGTTTGGATCA 57.497 26.923 0.00 0.00 43.50 2.92
3817 10304 8.647226 GCGAGCTATTTAAAATGTTTGTTCATT 58.353 29.630 0.00 0.00 39.35 2.57
3818 10305 8.028938 AGCGAGCTATTTAAAATGTTTGTTCAT 58.971 29.630 0.00 0.00 0.00 2.57
3819 10306 7.367285 AGCGAGCTATTTAAAATGTTTGTTCA 58.633 30.769 0.00 0.00 0.00 3.18
3820 10307 7.796958 AGCGAGCTATTTAAAATGTTTGTTC 57.203 32.000 0.00 0.00 0.00 3.18
3823 10310 9.107367 GCTATAGCGAGCTATTTAAAATGTTTG 57.893 33.333 20.87 0.00 39.65 2.93
3824 10311 8.836413 TGCTATAGCGAGCTATTTAAAATGTTT 58.164 29.630 20.87 0.00 45.83 2.83
3825 10312 8.283291 GTGCTATAGCGAGCTATTTAAAATGTT 58.717 33.333 20.87 0.00 45.83 2.71
3826 10313 7.359264 CGTGCTATAGCGAGCTATTTAAAATGT 60.359 37.037 20.87 0.00 45.83 2.71
3827 10314 6.950428 CGTGCTATAGCGAGCTATTTAAAATG 59.050 38.462 20.87 6.78 45.83 2.32
3828 10315 6.401153 GCGTGCTATAGCGAGCTATTTAAAAT 60.401 38.462 26.86 1.66 45.83 1.82
3829 10316 5.107607 GCGTGCTATAGCGAGCTATTTAAAA 60.108 40.000 26.86 4.01 45.83 1.52
3830 10317 4.384846 GCGTGCTATAGCGAGCTATTTAAA 59.615 41.667 26.86 4.35 45.83 1.52
3831 10318 3.918591 GCGTGCTATAGCGAGCTATTTAA 59.081 43.478 26.86 4.68 45.83 1.52
3832 10319 3.499048 GCGTGCTATAGCGAGCTATTTA 58.501 45.455 26.86 5.34 45.83 1.40
3833 10320 2.329379 GCGTGCTATAGCGAGCTATTT 58.671 47.619 26.86 3.45 45.83 1.40
3834 10321 1.983972 GCGTGCTATAGCGAGCTATT 58.016 50.000 26.86 7.41 45.83 1.73
3835 10322 3.704381 GCGTGCTATAGCGAGCTAT 57.296 52.632 26.86 19.78 45.83 2.97
3837 10324 2.353269 CTATAGCGTGCTATAGCGAGCT 59.647 50.000 33.83 33.83 46.26 4.09
3838 10325 2.710760 CTATAGCGTGCTATAGCGAGC 58.289 52.381 27.04 26.86 46.26 5.03
3844 10331 9.140286 CTTTTCTAAATGCTATAGCGTGCTATA 57.860 33.333 20.02 17.96 45.83 1.31
3845 10332 7.118390 CCTTTTCTAAATGCTATAGCGTGCTAT 59.882 37.037 20.02 17.65 45.83 2.97
3846 10333 6.423905 CCTTTTCTAAATGCTATAGCGTGCTA 59.576 38.462 20.02 13.04 45.83 3.49
3847 10334 5.237344 CCTTTTCTAAATGCTATAGCGTGCT 59.763 40.000 20.02 12.62 45.83 4.40
3848 10335 5.007724 ACCTTTTCTAAATGCTATAGCGTGC 59.992 40.000 20.02 0.00 45.83 5.34
3849 10336 6.292919 GGACCTTTTCTAAATGCTATAGCGTG 60.293 42.308 20.02 8.19 45.83 5.34
3850 10337 5.758784 GGACCTTTTCTAAATGCTATAGCGT 59.241 40.000 19.55 16.84 45.83 5.07
3851 10338 5.107453 CGGACCTTTTCTAAATGCTATAGCG 60.107 44.000 19.55 5.29 45.83 4.26
3852 10339 5.334182 GCGGACCTTTTCTAAATGCTATAGC 60.334 44.000 18.18 18.18 42.50 2.97
3853 10340 5.179555 GGCGGACCTTTTCTAAATGCTATAG 59.820 44.000 0.00 0.00 0.00 1.31
3854 10341 5.061179 GGCGGACCTTTTCTAAATGCTATA 58.939 41.667 0.00 0.00 0.00 1.31
3855 10342 3.883489 GGCGGACCTTTTCTAAATGCTAT 59.117 43.478 0.00 0.00 0.00 2.97
3856 10343 3.275999 GGCGGACCTTTTCTAAATGCTA 58.724 45.455 0.00 0.00 0.00 3.49
3857 10344 2.092323 GGCGGACCTTTTCTAAATGCT 58.908 47.619 0.00 0.00 0.00 3.79
3858 10345 1.202143 CGGCGGACCTTTTCTAAATGC 60.202 52.381 0.00 0.00 0.00 3.56
3859 10346 1.202143 GCGGCGGACCTTTTCTAAATG 60.202 52.381 9.78 0.00 0.00 2.32
3860 10347 1.092348 GCGGCGGACCTTTTCTAAAT 58.908 50.000 9.78 0.00 0.00 1.40
3861 10348 0.035739 AGCGGCGGACCTTTTCTAAA 59.964 50.000 9.78 0.00 0.00 1.85
3862 10349 0.896923 TAGCGGCGGACCTTTTCTAA 59.103 50.000 9.78 0.00 0.00 2.10
3863 10350 0.896923 TTAGCGGCGGACCTTTTCTA 59.103 50.000 9.78 0.00 0.00 2.10
3864 10351 0.391263 CTTAGCGGCGGACCTTTTCT 60.391 55.000 9.78 0.00 0.00 2.52
3865 10352 0.390735 TCTTAGCGGCGGACCTTTTC 60.391 55.000 9.78 0.00 0.00 2.29
3866 10353 0.391263 CTCTTAGCGGCGGACCTTTT 60.391 55.000 9.78 0.00 0.00 2.27
3867 10354 1.218316 CTCTTAGCGGCGGACCTTT 59.782 57.895 9.78 0.00 0.00 3.11
3868 10355 2.722201 CCTCTTAGCGGCGGACCTT 61.722 63.158 9.78 0.00 0.00 3.50
3869 10356 3.148279 CCTCTTAGCGGCGGACCT 61.148 66.667 9.78 0.00 0.00 3.85
3870 10357 4.893601 GCCTCTTAGCGGCGGACC 62.894 72.222 9.78 0.00 37.87 4.46
3878 10365 2.590401 GCGCGCTAAGCCTCTTAGC 61.590 63.158 26.67 22.09 44.76 3.09
3879 10366 0.311165 TAGCGCGCTAAGCCTCTTAG 59.689 55.000 36.77 8.76 44.76 2.18
3880 10367 0.959553 ATAGCGCGCTAAGCCTCTTA 59.040 50.000 40.90 20.62 44.76 2.10
3881 10368 0.105039 AATAGCGCGCTAAGCCTCTT 59.895 50.000 40.90 27.25 44.76 2.85
3882 10369 0.105039 AAATAGCGCGCTAAGCCTCT 59.895 50.000 40.90 23.18 44.76 3.69
3883 10370 1.779569 TAAATAGCGCGCTAAGCCTC 58.220 50.000 40.90 6.44 44.76 4.70
3884 10371 2.234300 TTAAATAGCGCGCTAAGCCT 57.766 45.000 40.90 26.65 44.76 4.58
3885 10372 3.033873 GTTTTAAATAGCGCGCTAAGCC 58.966 45.455 40.90 21.36 44.76 4.35
3886 10373 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
3887 10374 6.071463 CCATAGTTTTAAATAGCGCGCTAAG 58.929 40.000 40.90 15.88 31.73 2.18
3888 10375 5.524646 ACCATAGTTTTAAATAGCGCGCTAA 59.475 36.000 40.90 26.03 31.73 3.09
3889 10376 5.051816 ACCATAGTTTTAAATAGCGCGCTA 58.948 37.500 39.72 39.72 0.00 4.26
3890 10377 3.875134 ACCATAGTTTTAAATAGCGCGCT 59.125 39.130 38.01 38.01 0.00 5.92
3891 10378 4.205323 ACCATAGTTTTAAATAGCGCGC 57.795 40.909 26.66 26.66 0.00 6.86
3892 10379 6.018507 AGGTTACCATAGTTTTAAATAGCGCG 60.019 38.462 0.00 0.00 0.00 6.86
3893 10380 7.130269 CAGGTTACCATAGTTTTAAATAGCGC 58.870 38.462 3.51 0.00 0.00 5.92
3894 10381 8.120465 CACAGGTTACCATAGTTTTAAATAGCG 58.880 37.037 3.51 0.00 0.00 4.26
3895 10382 8.403236 CCACAGGTTACCATAGTTTTAAATAGC 58.597 37.037 3.51 0.00 0.00 2.97
3896 10383 9.457436 ACCACAGGTTACCATAGTTTTAAATAG 57.543 33.333 3.51 0.00 27.29 1.73
3897 10384 9.810870 AACCACAGGTTACCATAGTTTTAAATA 57.189 29.630 3.51 0.00 44.94 1.40
3898 10385 8.715190 AACCACAGGTTACCATAGTTTTAAAT 57.285 30.769 3.51 0.00 44.94 1.40
3934 10421 5.353938 CAAATGGATGATTTTGGTAGCCAG 58.646 41.667 0.00 0.00 33.81 4.85
3956 10443 0.461548 CTCCTACGCAAGATCCAGCA 59.538 55.000 7.63 0.00 43.62 4.41
3958 10445 1.339610 CTCCTCCTACGCAAGATCCAG 59.660 57.143 0.00 0.00 43.62 3.86
3983 10470 0.175302 AAGCTCCTGATGAGACAGCG 59.825 55.000 0.00 0.00 44.42 5.18
3986 10473 4.564782 AAATCAAGCTCCTGATGAGACA 57.435 40.909 1.64 0.00 44.42 3.41
3999 10486 4.265073 TGAGAGCCTTCCTAAAATCAAGC 58.735 43.478 0.00 0.00 0.00 4.01
4026 10513 4.437239 CTGTAGATGCTCTAACAACCTGG 58.563 47.826 0.00 0.00 29.58 4.45
4028 10515 3.118592 GGCTGTAGATGCTCTAACAACCT 60.119 47.826 0.00 0.00 29.58 3.50
4112 10621 1.891150 GGTTAGGACGTGAGGAAGACA 59.109 52.381 0.00 0.00 0.00 3.41
4123 10632 5.853936 TGAATGGATATGAAGGTTAGGACG 58.146 41.667 0.00 0.00 0.00 4.79
4124 10633 6.486993 GGTTGAATGGATATGAAGGTTAGGAC 59.513 42.308 0.00 0.00 0.00 3.85
4127 10636 6.364701 TGGGTTGAATGGATATGAAGGTTAG 58.635 40.000 0.00 0.00 0.00 2.34
4144 10653 2.952978 AGTTTTACGTTGCATGGGTTGA 59.047 40.909 0.00 0.00 0.00 3.18
4146 10655 3.057806 GCTAGTTTTACGTTGCATGGGTT 60.058 43.478 0.00 0.00 0.00 4.11
4171 10680 4.862574 TGCTAAGTGTGCTGATTTACGTAG 59.137 41.667 0.00 0.00 0.00 3.51
4183 10692 2.584791 CCGAATTGTTGCTAAGTGTGC 58.415 47.619 0.00 0.00 0.00 4.57
4215 10724 2.380084 TTTCCGGTGACTGATAGCAC 57.620 50.000 0.00 0.00 0.00 4.40
4217 10726 2.007608 GGTTTTCCGGTGACTGATAGC 58.992 52.381 0.00 0.00 0.00 2.97
4221 10730 2.421751 TTTGGTTTTCCGGTGACTGA 57.578 45.000 0.00 0.00 44.36 3.41
4233 10742 5.762045 CGATGAACTGTGATCTTTTGGTTT 58.238 37.500 0.00 0.00 0.00 3.27
4278 10787 8.918658 CCAAACATATCACAATCTTTGTTGAAG 58.081 33.333 0.00 0.00 43.23 3.02
4302 10811 6.425735 ACAACAACCAATATCATCAGATCCA 58.574 36.000 0.00 0.00 35.67 3.41
4331 10840 5.774690 AGATTGTTGATTACCTGGCTGAAAA 59.225 36.000 0.00 0.00 0.00 2.29
4353 10862 9.547753 CTTTATTGTTTGATAAGCCTAGCTAGA 57.452 33.333 22.70 1.99 38.25 2.43
4493 11100 2.351726 GCGCCTAGTGGTACATTTGAAG 59.648 50.000 0.00 0.00 44.52 3.02
4505 11112 1.741770 GGTGTGGAAGCGCCTAGTG 60.742 63.158 2.29 0.00 37.63 2.74
4570 11177 6.317140 CAGACTGCATTTTATGTACACCTGAT 59.683 38.462 0.00 0.00 0.00 2.90
4595 11208 2.280119 TGTGGCACGCTGACAGAC 60.280 61.111 13.77 0.00 35.04 3.51
4745 11359 4.509600 GCTCAAGGATCTTATGGTTCTTCG 59.490 45.833 0.00 0.00 0.00 3.79
4777 11391 4.868734 GTGTTATGTAGTAGCAACCTCCAC 59.131 45.833 0.00 0.00 0.00 4.02
4892 11506 4.820284 TTAACACATGACGCAAACATCA 57.180 36.364 0.00 0.00 0.00 3.07
4933 11554 3.917300 ACATTACCAGGGTGTTTTTCCA 58.083 40.909 0.06 0.00 0.00 3.53
4935 11556 8.621286 CAGATATACATTACCAGGGTGTTTTTC 58.379 37.037 0.06 0.00 0.00 2.29
4953 11574 6.222389 AGCATCTGCAGAAAGTCAGATATAC 58.778 40.000 22.50 0.00 45.35 1.47
4970 11591 3.872696 TGTATGGTGGTACAAGCATCTG 58.127 45.455 18.10 0.00 44.16 2.90
5022 11651 2.408565 GGAGAGAGGGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
5023 11652 1.070758 CGGAGAGAGGGAGAGAGAGAG 59.929 61.905 0.00 0.00 0.00 3.20
5228 11863 3.054875 TCTGCAAGCACAGAATATGTCCT 60.055 43.478 2.01 0.00 43.59 3.85
5319 12261 0.391927 TTCTGGTTAACCGGCGATGG 60.392 55.000 26.22 7.73 42.21 3.51
5399 12358 0.108520 AACCGTATCGACAATGGCGT 60.109 50.000 8.85 0.00 0.00 5.68
5402 12361 3.259064 ACAAGAACCGTATCGACAATGG 58.741 45.455 6.35 6.35 0.00 3.16
5496 12458 9.247861 ACTCATTTCTACTTAATTGAAAGGCAT 57.752 29.630 0.00 0.00 35.84 4.40
5654 12759 7.285629 GGAATATGGACCTCATCATCGATAGTA 59.714 40.741 0.00 0.00 37.30 1.82
5670 12775 5.485209 AATAAGGAGGTCGGAATATGGAC 57.515 43.478 0.00 0.00 0.00 4.02
5672 12777 5.705905 GGAAAATAAGGAGGTCGGAATATGG 59.294 44.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.