Multiple sequence alignment - TraesCS5D01G107300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G107300 chr5D 100.000 1446 0 0 867 2312 120897394 120895949 0.000000e+00 2671.0
1 TraesCS5D01G107300 chr5D 100.000 671 0 0 1 671 120898260 120897590 0.000000e+00 1240.0
2 TraesCS5D01G107300 chr5A 96.520 862 30 0 892 1753 131803323 131802462 0.000000e+00 1426.0
3 TraesCS5D01G107300 chr5A 94.271 384 14 5 1932 2312 131801698 131801320 4.280000e-162 580.0
4 TraesCS5D01G107300 chr5A 90.580 138 13 0 1770 1907 131801828 131801691 1.410000e-42 183.0
5 TraesCS5D01G107300 chr5A 81.690 213 33 4 265 476 546358691 546358898 3.050000e-39 172.0
6 TraesCS5D01G107300 chr5A 97.222 72 2 0 516 587 131803880 131803809 3.120000e-24 122.0
7 TraesCS5D01G107300 chr5B 96.612 856 24 2 870 1724 134050676 134049825 0.000000e+00 1415.0
8 TraesCS5D01G107300 chr5B 95.581 430 15 3 1886 2312 134048833 134048405 0.000000e+00 686.0
9 TraesCS5D01G107300 chr5B 92.771 166 10 2 506 671 134050913 134050750 2.970000e-59 239.0
10 TraesCS5D01G107300 chr5B 97.727 132 3 0 1757 1888 134049229 134049098 6.430000e-56 228.0
11 TraesCS5D01G107300 chr2B 84.294 503 65 5 1 503 667246002 667245514 1.610000e-131 479.0
12 TraesCS5D01G107300 chr2B 82.979 376 57 6 134 508 59644548 59644179 1.320000e-87 333.0
13 TraesCS5D01G107300 chr2B 72.292 480 102 16 5 470 727087431 727086969 1.120000e-23 121.0
14 TraesCS5D01G107300 chr2B 100.000 43 0 0 1576 1618 133948215 133948257 1.900000e-11 80.5
15 TraesCS5D01G107300 chr4D 87.204 422 34 11 88 509 320194620 320194219 1.620000e-126 462.0
16 TraesCS5D01G107300 chr4D 81.390 446 60 11 9 445 19326325 19326756 2.200000e-90 342.0
17 TraesCS5D01G107300 chr3D 82.051 507 80 6 5 506 153509102 153508602 2.750000e-114 422.0
18 TraesCS5D01G107300 chr4A 83.616 354 43 6 8 359 251275141 251274801 3.710000e-83 318.0
19 TraesCS5D01G107300 chrUn 83.333 288 36 5 144 430 24397440 24397164 2.950000e-64 255.0
20 TraesCS5D01G107300 chr3A 80.060 331 53 8 169 496 382151398 382151718 1.380000e-57 233.0
21 TraesCS5D01G107300 chr7B 73.846 520 102 21 9 507 75789273 75788767 2.360000e-40 176.0
22 TraesCS5D01G107300 chr2A 73.009 452 85 19 36 481 41228996 41228576 8.670000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G107300 chr5D 120895949 120898260 2311 True 1955.50 2671 100.00000 1 2312 2 chr5D.!!$R1 2311
1 TraesCS5D01G107300 chr5A 131801320 131803880 2560 True 577.75 1426 94.64825 516 2312 4 chr5A.!!$R1 1796
2 TraesCS5D01G107300 chr5B 134048405 134050913 2508 True 642.00 1415 95.67275 506 2312 4 chr5B.!!$R1 1806
3 TraesCS5D01G107300 chr3D 153508602 153509102 500 True 422.00 422 82.05100 5 506 1 chr3D.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 893 0.107508 AGCATCGATTCACACCCCTG 60.108 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 2777 0.868406 GACTGTGTAAGCTGGTGTGC 59.132 55.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.006571 GGTGCGTCCGAACTCAAGA 60.007 57.895 0.00 0.00 0.00 3.02
32 33 2.002586 CGTCCGAACTCAAGATGCATT 58.997 47.619 0.00 0.00 0.00 3.56
33 34 2.029728 CGTCCGAACTCAAGATGCATTC 59.970 50.000 0.00 0.00 0.00 2.67
41 42 1.091771 CAAGATGCATTCGCCGTCCT 61.092 55.000 0.00 0.00 37.32 3.85
61 62 4.778143 GGAAGCACCGGCATCCGT 62.778 66.667 0.00 0.00 46.70 4.69
87 88 4.933064 CGAGGAGCCGCGTCCATC 62.933 72.222 17.08 10.57 39.34 3.51
88 89 4.593864 GAGGAGCCGCGTCCATCC 62.594 72.222 17.08 12.24 39.34 3.51
92 93 4.853142 AGCCGCGTCCATCCCCTA 62.853 66.667 4.92 0.00 0.00 3.53
94 95 4.280494 CCGCGTCCATCCCCTACG 62.280 72.222 4.92 0.00 39.55 3.51
123 124 1.477553 GAGCATTGCCCCATCTTTCA 58.522 50.000 4.70 0.00 0.00 2.69
127 128 1.402968 CATTGCCCCATCTTTCAGTCG 59.597 52.381 0.00 0.00 0.00 4.18
128 129 0.400213 TTGCCCCATCTTTCAGTCGT 59.600 50.000 0.00 0.00 0.00 4.34
147 148 4.395583 GTGGTCGCTGCTTGCTGC 62.396 66.667 13.27 13.27 40.11 5.25
149 150 3.797546 GGTCGCTGCTTGCTGCTC 61.798 66.667 19.16 12.85 43.37 4.26
151 152 4.362476 TCGCTGCTTGCTGCTCGA 62.362 61.111 19.16 9.57 43.37 4.04
154 155 1.220169 CGCTGCTTGCTGCTCGATAT 61.220 55.000 19.16 0.00 43.37 1.63
156 157 1.725706 GCTGCTTGCTGCTCGATATAG 59.274 52.381 15.47 0.00 43.37 1.31
160 161 2.873609 CTTGCTGCTCGATATAGCGAT 58.126 47.619 14.22 0.00 45.85 4.58
163 164 3.653344 TGCTGCTCGATATAGCGATTTT 58.347 40.909 14.22 0.00 45.85 1.82
167 168 4.871513 TGCTCGATATAGCGATTTTCTGT 58.128 39.130 14.22 0.00 45.85 3.41
174 175 7.919091 TCGATATAGCGATTTTCTGTAACAAGT 59.081 33.333 9.38 0.00 35.01 3.16
178 179 8.997621 ATAGCGATTTTCTGTAACAAGTTCTA 57.002 30.769 0.00 0.00 0.00 2.10
245 246 8.349568 ACAAATTAAATTCCAACTAGACCTCC 57.650 34.615 0.00 0.00 0.00 4.30
248 249 4.635699 AAATTCCAACTAGACCTCCGTT 57.364 40.909 0.00 0.00 0.00 4.44
252 253 0.608640 CAACTAGACCTCCGTTGCCT 59.391 55.000 0.00 0.00 32.68 4.75
253 254 0.896226 AACTAGACCTCCGTTGCCTC 59.104 55.000 0.00 0.00 0.00 4.70
257 258 0.472471 AGACCTCCGTTGCCTCAAAA 59.528 50.000 0.00 0.00 0.00 2.44
258 259 1.133915 AGACCTCCGTTGCCTCAAAAA 60.134 47.619 0.00 0.00 0.00 1.94
281 282 2.689083 CAACACGACCTCTGTTGCA 58.311 52.632 3.30 0.00 41.45 4.08
282 283 1.013596 CAACACGACCTCTGTTGCAA 58.986 50.000 0.00 0.00 41.45 4.08
283 284 1.003545 CAACACGACCTCTGTTGCAAG 60.004 52.381 0.00 0.00 41.45 4.01
284 285 0.464036 ACACGACCTCTGTTGCAAGA 59.536 50.000 0.00 0.00 0.00 3.02
362 364 4.981389 TGCAAATTTTCCGCAACATAAC 57.019 36.364 0.00 0.00 31.46 1.89
365 367 2.931512 ATTTTCCGCAACATAACCCG 57.068 45.000 0.00 0.00 0.00 5.28
406 408 0.110238 CACGAGATGTTTTGCGGTGG 60.110 55.000 0.00 0.00 0.00 4.61
408 410 0.591170 CGAGATGTTTTGCGGTGGTT 59.409 50.000 0.00 0.00 0.00 3.67
412 414 2.034558 AGATGTTTTGCGGTGGTTGAAG 59.965 45.455 0.00 0.00 0.00 3.02
422 424 0.602905 GTGGTTGAAGGTGACCCTCG 60.603 60.000 0.00 0.00 41.56 4.63
424 426 0.320508 GGTTGAAGGTGACCCTCGAC 60.321 60.000 11.47 11.47 41.56 4.20
430 432 3.371063 GTGACCCTCGACCGCTCA 61.371 66.667 0.00 0.00 0.00 4.26
435 437 2.427245 CCCTCGACCGCTCAATCCT 61.427 63.158 0.00 0.00 0.00 3.24
438 440 0.457851 CTCGACCGCTCAATCCTTCT 59.542 55.000 0.00 0.00 0.00 2.85
443 445 1.139853 ACCGCTCAATCCTTCTGATCC 59.860 52.381 0.00 0.00 31.61 3.36
444 446 1.495878 CGCTCAATCCTTCTGATCCG 58.504 55.000 0.00 0.00 31.61 4.18
447 449 2.736978 CTCAATCCTTCTGATCCGACG 58.263 52.381 0.00 0.00 31.61 5.12
453 455 0.108615 CTTCTGATCCGACGGCTTGT 60.109 55.000 9.66 0.00 0.00 3.16
466 468 3.197790 CTTGTGAGGCGGCGGATG 61.198 66.667 9.78 0.00 0.00 3.51
470 472 2.033448 TGAGGCGGCGGATGTTTT 59.967 55.556 9.78 0.00 0.00 2.43
475 477 1.614413 AGGCGGCGGATGTTTTAAAAA 59.386 42.857 9.78 0.00 0.00 1.94
481 483 5.583495 CGGCGGATGTTTTAAAAATATCCA 58.417 37.500 27.87 14.62 35.37 3.41
482 484 6.212955 CGGCGGATGTTTTAAAAATATCCAT 58.787 36.000 27.87 17.55 35.37 3.41
483 485 6.362283 CGGCGGATGTTTTAAAAATATCCATC 59.638 38.462 27.87 22.12 35.37 3.51
493 499 3.626680 ATATCCATCGGCCGACGCG 62.627 63.158 33.75 21.59 43.86 6.01
497 503 4.547905 CATCGGCCGACGCGTAGT 62.548 66.667 33.75 10.25 43.86 2.73
528 534 7.179694 CCCATTTCGTATAAGGTAATCTCCCTA 59.820 40.741 0.00 0.00 0.00 3.53
581 587 5.178096 TGCCCTCTCAATTTTCTCACATA 57.822 39.130 0.00 0.00 0.00 2.29
617 623 3.554752 GCCTGTGTACAACCGTTAACCTA 60.555 47.826 0.00 0.00 0.00 3.08
628 634 4.329392 ACCGTTAACCTAACCCTCAATTG 58.671 43.478 0.00 0.00 35.27 2.32
629 635 4.041938 ACCGTTAACCTAACCCTCAATTGA 59.958 41.667 8.12 8.12 35.27 2.57
630 636 5.190677 CCGTTAACCTAACCCTCAATTGAT 58.809 41.667 8.96 0.00 35.27 2.57
648 654 6.674694 ATTGATACTAAGCTGCTCACTTTG 57.325 37.500 1.00 0.00 0.00 2.77
649 655 5.405935 TGATACTAAGCTGCTCACTTTGA 57.594 39.130 1.00 0.00 0.00 2.69
650 656 5.414360 TGATACTAAGCTGCTCACTTTGAG 58.586 41.667 1.00 0.00 46.90 3.02
887 893 0.107508 AGCATCGATTCACACCCCTG 60.108 55.000 0.00 0.00 0.00 4.45
938 1157 8.430801 AAAATAGTTTCAGCTGAGCATACTAG 57.569 34.615 17.43 0.00 0.00 2.57
939 1158 3.791245 AGTTTCAGCTGAGCATACTAGC 58.209 45.455 17.43 2.18 37.71 3.42
941 1160 4.646945 AGTTTCAGCTGAGCATACTAGCTA 59.353 41.667 17.43 0.00 46.75 3.32
958 1177 3.951663 AGCTAACACCAAGTCCATTACC 58.048 45.455 0.00 0.00 0.00 2.85
982 1201 3.061429 GCGATCCGAAAGAAGACAAGAAG 59.939 47.826 0.00 0.00 0.00 2.85
1014 1233 2.359169 GGCGATGGAGAGGGTGACA 61.359 63.158 0.00 0.00 0.00 3.58
1083 1302 1.591703 GATGAGCCACTCGGTGACA 59.408 57.895 5.71 4.17 35.23 3.58
1367 1586 1.656818 ATTTTCGCACCTCGCCATGG 61.657 55.000 7.63 7.63 37.30 3.66
1383 1602 0.767375 ATGGAAGCATGTATCCGCCT 59.233 50.000 12.43 0.57 38.63 5.52
1551 1771 6.874664 TGGAATAACGCATACAAGTGTCTTTA 59.125 34.615 0.00 0.00 0.00 1.85
1624 1844 7.226523 GGGTTTCACAAATGCTACTCAAAATTT 59.773 33.333 0.00 0.00 0.00 1.82
1634 1854 6.883744 TGCTACTCAAAATTTGGTTTTTCCT 58.116 32.000 5.83 0.00 37.93 3.36
1701 1921 4.388577 AAGATGGCCTTTTAGGAGTGTT 57.611 40.909 3.32 0.00 37.67 3.32
1734 1954 3.064931 AGGTAGAAACGCGGAAAAGAAG 58.935 45.455 12.47 0.00 0.00 2.85
1819 2818 2.831685 TGCCGAGTTTCTTTCTAGCA 57.168 45.000 0.00 0.00 0.00 3.49
2073 3340 8.428063 TCATAAACCTAATAATTTTGGCCATGG 58.572 33.333 6.09 7.63 31.68 3.66
2281 3550 2.806434 TGTTTGAGCCACCAATGCTAT 58.194 42.857 0.00 0.00 39.69 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.270923 CGAATGCATCTTGAGTTCGGA 58.729 47.619 0.00 0.00 38.30 4.55
26 27 2.514592 CCAGGACGGCGAATGCAT 60.515 61.111 16.62 0.00 45.35 3.96
41 42 4.424711 GATGCCGGTGCTTCCCCA 62.425 66.667 1.90 0.00 36.05 4.96
55 56 4.429212 TCGCGGTGGACACGGATG 62.429 66.667 6.13 5.53 34.05 3.51
56 57 4.129737 CTCGCGGTGGACACGGAT 62.130 66.667 6.13 0.00 34.05 4.18
71 72 4.593864 GGATGGACGCGGCTCCTC 62.594 72.222 13.91 6.13 0.00 3.71
78 79 2.473664 GATCGTAGGGGATGGACGCG 62.474 65.000 3.53 3.53 36.54 6.01
79 80 1.289380 GATCGTAGGGGATGGACGC 59.711 63.158 0.00 0.00 36.54 5.19
83 84 1.228769 TCGGGATCGTAGGGGATGG 60.229 63.158 0.00 0.00 37.69 3.51
87 88 2.600769 CCCTCGGGATCGTAGGGG 60.601 72.222 14.91 7.64 43.60 4.79
88 89 1.604023 CTCCCTCGGGATCGTAGGG 60.604 68.421 16.08 16.08 46.08 3.53
91 92 0.469331 AATGCTCCCTCGGGATCGTA 60.469 55.000 4.90 0.00 44.24 3.43
92 93 1.762460 AATGCTCCCTCGGGATCGT 60.762 57.895 4.90 0.00 44.24 3.73
94 95 1.599240 GCAATGCTCCCTCGGGATC 60.599 63.158 4.90 1.64 44.24 3.36
110 111 0.036388 GACGACTGAAAGATGGGGCA 60.036 55.000 0.00 0.00 37.43 5.36
111 112 1.084370 CGACGACTGAAAGATGGGGC 61.084 60.000 0.00 0.00 37.43 5.80
112 113 0.246635 ACGACGACTGAAAGATGGGG 59.753 55.000 0.00 0.00 37.43 4.96
115 116 1.986378 GACCACGACGACTGAAAGATG 59.014 52.381 0.00 0.00 37.43 2.90
116 117 1.401148 CGACCACGACGACTGAAAGAT 60.401 52.381 0.00 0.00 42.66 2.40
123 124 4.702081 GCAGCGACCACGACGACT 62.702 66.667 0.00 0.00 42.66 4.18
127 128 4.077188 GCAAGCAGCGACCACGAC 62.077 66.667 0.00 0.00 42.66 4.34
147 148 7.853377 TGTTACAGAAAATCGCTATATCGAG 57.147 36.000 4.85 0.00 42.14 4.04
149 150 8.062231 ACTTGTTACAGAAAATCGCTATATCG 57.938 34.615 0.00 0.00 0.00 2.92
151 152 9.601217 AGAACTTGTTACAGAAAATCGCTATAT 57.399 29.630 0.00 0.00 0.00 0.86
154 155 8.869897 CATAGAACTTGTTACAGAAAATCGCTA 58.130 33.333 0.00 0.00 0.00 4.26
156 157 7.519002 ACATAGAACTTGTTACAGAAAATCGC 58.481 34.615 0.00 0.00 0.00 4.58
160 161 7.990917 TGCAACATAGAACTTGTTACAGAAAA 58.009 30.769 0.00 0.00 35.61 2.29
163 164 7.561021 TTTGCAACATAGAACTTGTTACAGA 57.439 32.000 0.00 0.00 35.61 3.41
237 238 1.344065 TTTGAGGCAACGGAGGTCTA 58.656 50.000 0.00 0.00 46.39 2.59
240 241 3.505835 TTTTTGAGGCAACGGAGGT 57.494 47.368 0.00 0.00 46.39 3.85
257 258 2.297701 ACAGAGGTCGTGTTGCAATTT 58.702 42.857 0.59 0.00 0.00 1.82
258 259 1.967319 ACAGAGGTCGTGTTGCAATT 58.033 45.000 0.59 0.00 0.00 2.32
268 269 3.691049 TTTTTCTTGCAACAGAGGTCG 57.309 42.857 0.00 0.00 0.00 4.79
301 302 6.810182 GCAGATTATTTTTGCAACAGATGTCT 59.190 34.615 0.00 0.00 37.75 3.41
334 335 4.511617 TGCGGAAAATTTGCAACATAGA 57.488 36.364 0.00 0.00 35.33 1.98
347 348 1.267261 CACGGGTTATGTTGCGGAAAA 59.733 47.619 0.00 0.00 0.00 2.29
392 394 2.393764 CTTCAACCACCGCAAAACATC 58.606 47.619 0.00 0.00 0.00 3.06
393 395 1.068434 CCTTCAACCACCGCAAAACAT 59.932 47.619 0.00 0.00 0.00 2.71
397 399 0.394488 TCACCTTCAACCACCGCAAA 60.394 50.000 0.00 0.00 0.00 3.68
402 404 4.494515 GGGTCACCTTCAACCACC 57.505 61.111 0.00 0.00 37.28 4.61
412 414 4.131088 GAGCGGTCGAGGGTCACC 62.131 72.222 0.00 0.00 32.38 4.02
422 424 2.478831 GATCAGAAGGATTGAGCGGTC 58.521 52.381 7.89 7.89 36.00 4.79
424 426 1.871408 CGGATCAGAAGGATTGAGCGG 60.871 57.143 0.00 0.00 36.00 5.52
430 432 0.105039 GCCGTCGGATCAGAAGGATT 59.895 55.000 26.87 0.00 41.37 3.01
435 437 0.389817 CACAAGCCGTCGGATCAGAA 60.390 55.000 17.49 0.00 0.00 3.02
438 440 1.215382 CTCACAAGCCGTCGGATCA 59.785 57.895 17.49 0.00 0.00 2.92
453 455 0.321741 TTAAAACATCCGCCGCCTCA 60.322 50.000 0.00 0.00 0.00 3.86
466 468 5.684184 GTCGGCCGATGGATATTTTTAAAAC 59.316 40.000 33.58 8.64 0.00 2.43
470 472 3.061322 CGTCGGCCGATGGATATTTTTA 58.939 45.455 34.99 4.72 39.56 1.52
475 477 2.261671 GCGTCGGCCGATGGATAT 59.738 61.111 40.21 0.00 39.56 1.63
481 483 2.890109 CTACTACGCGTCGGCCGAT 61.890 63.158 33.58 18.35 39.56 4.18
482 484 3.566853 CTACTACGCGTCGGCCGA 61.567 66.667 27.28 27.28 39.56 5.54
493 499 2.497107 TACGAAATGGGCGCTACTAC 57.503 50.000 7.64 0.00 0.00 2.73
497 503 2.366266 ACCTTATACGAAATGGGCGCTA 59.634 45.455 7.64 0.00 0.00 4.26
509 515 6.433441 AGGGATAGGGAGATTACCTTATACG 58.567 44.000 0.00 0.00 39.54 3.06
528 534 5.485708 ACAGCTACAAAGAAGAGTAAGGGAT 59.514 40.000 0.00 0.00 0.00 3.85
587 593 2.417586 GGTTGTACACAGGCGTATTTCC 59.582 50.000 0.00 0.00 0.00 3.13
617 623 4.884164 GCAGCTTAGTATCAATTGAGGGTT 59.116 41.667 14.54 0.00 0.00 4.11
628 634 5.655488 TCTCAAAGTGAGCAGCTTAGTATC 58.345 41.667 0.00 0.00 43.95 2.24
629 635 5.667539 TCTCAAAGTGAGCAGCTTAGTAT 57.332 39.130 0.00 0.00 43.95 2.12
630 636 5.468540 TTCTCAAAGTGAGCAGCTTAGTA 57.531 39.130 0.00 0.00 43.95 1.82
648 654 1.734465 CTGGGACGTCTGCATTTTCTC 59.266 52.381 16.46 0.00 0.00 2.87
649 655 1.347707 TCTGGGACGTCTGCATTTTCT 59.652 47.619 16.46 0.00 0.00 2.52
650 656 1.808411 TCTGGGACGTCTGCATTTTC 58.192 50.000 16.46 0.00 0.00 2.29
651 657 2.496899 ATCTGGGACGTCTGCATTTT 57.503 45.000 16.46 0.00 0.00 1.82
868 874 0.107508 CAGGGGTGTGAATCGATGCT 60.108 55.000 4.68 0.00 0.00 3.79
876 882 1.040339 GTGGTTTGCAGGGGTGTGAA 61.040 55.000 0.00 0.00 0.00 3.18
887 893 2.545742 GGTCCTGTGATTTGTGGTTTGC 60.546 50.000 0.00 0.00 0.00 3.68
938 1157 3.681593 TGGTAATGGACTTGGTGTTAGC 58.318 45.455 0.00 0.00 0.00 3.09
939 1158 3.689649 GCTGGTAATGGACTTGGTGTTAG 59.310 47.826 0.00 0.00 0.00 2.34
940 1159 3.681593 GCTGGTAATGGACTTGGTGTTA 58.318 45.455 0.00 0.00 0.00 2.41
941 1160 2.514803 GCTGGTAATGGACTTGGTGTT 58.485 47.619 0.00 0.00 0.00 3.32
958 1177 1.996292 TGTCTTCTTTCGGATCGCTG 58.004 50.000 0.00 0.00 0.00 5.18
1014 1233 1.784525 CTTTCTCGGACGACAGCTTT 58.215 50.000 0.00 0.00 0.00 3.51
1243 1462 1.669779 GCTGAGATGCAAGGACATGAC 59.330 52.381 0.00 0.00 0.00 3.06
1314 1533 1.317613 TGAACTGATGTTGCACCCAC 58.682 50.000 0.00 0.00 36.39 4.61
1367 1586 1.560860 GCGAGGCGGATACATGCTTC 61.561 60.000 0.00 0.00 34.23 3.86
1383 1602 4.339872 TTTCCCTACTTGTGTTAAGCGA 57.660 40.909 0.00 0.00 0.00 4.93
1510 1730 6.035005 CGTTATTCCATAGACTCACACTGTTG 59.965 42.308 0.00 0.00 0.00 3.33
1551 1771 7.489113 GGACGTCATAAATTGCATTTCTCATTT 59.511 33.333 18.91 0.00 33.82 2.32
1571 1791 2.616842 ACAACTGTTGGAAATGGACGTC 59.383 45.455 23.15 7.13 34.12 4.34
1624 1844 1.305201 GCGACACTCAGGAAAAACCA 58.695 50.000 0.00 0.00 42.04 3.67
1634 1854 1.954146 GCAAAGACGGCGACACTCA 60.954 57.895 16.62 0.00 0.00 3.41
1701 1921 4.558095 GCGTTTCTACCTTCACTGAGTGTA 60.558 45.833 12.93 1.61 34.79 2.90
1734 1954 3.159984 CGCTCTCGTCAAAGGCAC 58.840 61.111 0.00 0.00 0.00 5.01
1778 2777 0.868406 GACTGTGTAAGCTGGTGTGC 59.132 55.000 0.00 0.00 0.00 4.57
1819 2818 3.008375 TGTCTCCTTATTTGCTGAGTGCT 59.992 43.478 0.00 0.00 43.37 4.40
1904 3170 6.547141 TGGCACAATCAATTCCTAATAGAAGG 59.453 38.462 0.00 0.00 34.26 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.