Multiple sequence alignment - TraesCS5D01G106800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G106800 chr5D 100.000 2315 0 0 1 2315 120774152 120771838 0.000000e+00 4276
1 TraesCS5D01G106800 chr5A 92.291 1842 75 24 510 2315 131567680 131565870 0.000000e+00 2553
2 TraesCS5D01G106800 chr5B 92.430 1070 55 21 776 1838 133862384 133861334 0.000000e+00 1504
3 TraesCS5D01G106800 chr5B 95.906 342 8 5 510 846 133862686 133862346 1.210000e-152 549
4 TraesCS5D01G106800 chr2D 87.243 486 58 3 2 483 547776531 547777016 3.360000e-153 551
5 TraesCS5D01G106800 chr2D 86.475 488 60 4 3 486 576579829 576579344 4.380000e-147 531
6 TraesCS5D01G106800 chr2A 86.680 488 61 2 3 486 714526943 714526456 2.620000e-149 538
7 TraesCS5D01G106800 chr1B 86.475 488 60 3 2 483 161983103 161983590 4.380000e-147 531
8 TraesCS5D01G106800 chr4B 86.307 482 60 6 5 483 90463856 90464334 9.480000e-144 520
9 TraesCS5D01G106800 chr1D 86.270 488 56 10 3 483 181630530 181631013 9.480000e-144 520
10 TraesCS5D01G106800 chr7B 85.918 490 63 6 2 486 725643220 725643708 3.410000e-143 518
11 TraesCS5D01G106800 chr3D 85.950 484 64 4 3 483 170705898 170706380 4.410000e-142 514
12 TraesCS5D01G106800 chr3D 85.656 488 66 4 2 486 457067545 457067059 5.710000e-141 510


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G106800 chr5D 120771838 120774152 2314 True 4276.0 4276 100.000 1 2315 1 chr5D.!!$R1 2314
1 TraesCS5D01G106800 chr5A 131565870 131567680 1810 True 2553.0 2553 92.291 510 2315 1 chr5A.!!$R1 1805
2 TraesCS5D01G106800 chr5B 133861334 133862686 1352 True 1026.5 1504 94.168 510 1838 2 chr5B.!!$R1 1328

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 330 0.104855 GCGGTGACATAGCCTGATCA 59.895 55.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 2346 0.1792 CGTCAAATAGCCGTTGCCAC 60.179 55.0 0.0 0.0 38.69 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.927294 ATTAATAGTGTAAACTCCAGCAGC 57.073 37.500 0.00 0.00 0.00 5.25
48 49 4.559862 AATAGTGTAAACTCCAGCAGCT 57.440 40.909 0.00 0.00 0.00 4.24
49 50 2.175878 AGTGTAAACTCCAGCAGCTG 57.824 50.000 16.23 16.23 0.00 4.24
50 51 1.694150 AGTGTAAACTCCAGCAGCTGA 59.306 47.619 24.90 9.04 32.44 4.26
51 52 2.104792 AGTGTAAACTCCAGCAGCTGAA 59.895 45.455 24.90 1.31 32.44 3.02
52 53 2.224314 GTGTAAACTCCAGCAGCTGAAC 59.776 50.000 24.90 11.49 32.44 3.18
53 54 2.158827 TGTAAACTCCAGCAGCTGAACA 60.159 45.455 24.90 13.72 32.44 3.18
54 55 2.057137 AAACTCCAGCAGCTGAACAA 57.943 45.000 24.90 5.36 32.44 2.83
55 56 1.312815 AACTCCAGCAGCTGAACAAC 58.687 50.000 24.90 0.00 32.44 3.32
56 57 0.181114 ACTCCAGCAGCTGAACAACA 59.819 50.000 24.90 0.00 32.44 3.33
57 58 1.202855 ACTCCAGCAGCTGAACAACAT 60.203 47.619 24.90 0.00 32.44 2.71
58 59 1.467734 CTCCAGCAGCTGAACAACATC 59.532 52.381 24.90 0.00 32.44 3.06
59 60 0.167470 CCAGCAGCTGAACAACATCG 59.833 55.000 24.90 0.00 32.44 3.84
60 61 1.150827 CAGCAGCTGAACAACATCGA 58.849 50.000 20.43 0.00 32.44 3.59
61 62 1.736126 CAGCAGCTGAACAACATCGAT 59.264 47.619 20.43 0.00 32.44 3.59
62 63 2.005451 AGCAGCTGAACAACATCGATC 58.995 47.619 20.43 0.00 0.00 3.69
63 64 1.063174 GCAGCTGAACAACATCGATCC 59.937 52.381 20.43 0.00 0.00 3.36
64 65 2.349590 CAGCTGAACAACATCGATCCA 58.650 47.619 8.42 0.00 0.00 3.41
65 66 2.743664 CAGCTGAACAACATCGATCCAA 59.256 45.455 8.42 0.00 0.00 3.53
66 67 3.189080 CAGCTGAACAACATCGATCCAAA 59.811 43.478 8.42 0.00 0.00 3.28
67 68 3.820467 AGCTGAACAACATCGATCCAAAA 59.180 39.130 0.00 0.00 0.00 2.44
68 69 4.278170 AGCTGAACAACATCGATCCAAAAA 59.722 37.500 0.00 0.00 0.00 1.94
91 92 6.456795 AAAGCAGGAAATAAATACTGAGGC 57.543 37.500 0.00 0.00 32.86 4.70
92 93 4.464947 AGCAGGAAATAAATACTGAGGCC 58.535 43.478 0.00 0.00 32.86 5.19
93 94 4.079787 AGCAGGAAATAAATACTGAGGCCA 60.080 41.667 5.01 0.00 32.86 5.36
94 95 4.829492 GCAGGAAATAAATACTGAGGCCAT 59.171 41.667 5.01 0.00 32.86 4.40
95 96 6.003950 GCAGGAAATAAATACTGAGGCCATA 58.996 40.000 5.01 0.00 32.86 2.74
96 97 6.660949 GCAGGAAATAAATACTGAGGCCATAT 59.339 38.462 5.01 0.00 32.86 1.78
97 98 7.829211 GCAGGAAATAAATACTGAGGCCATATA 59.171 37.037 5.01 0.00 32.86 0.86
98 99 9.167311 CAGGAAATAAATACTGAGGCCATATAC 57.833 37.037 5.01 0.00 32.86 1.47
99 100 8.329502 AGGAAATAAATACTGAGGCCATATACC 58.670 37.037 5.01 0.00 0.00 2.73
100 101 8.329502 GGAAATAAATACTGAGGCCATATACCT 58.670 37.037 5.01 0.00 41.41 3.08
104 105 4.891566 GAGGCCATATACCTCGCG 57.108 61.111 5.01 0.00 44.10 5.87
105 106 2.264124 GAGGCCATATACCTCGCGA 58.736 57.895 9.26 9.26 44.10 5.87
106 107 0.109226 GAGGCCATATACCTCGCGAC 60.109 60.000 3.71 0.00 44.10 5.19
107 108 0.826256 AGGCCATATACCTCGCGACA 60.826 55.000 3.71 0.00 28.76 4.35
108 109 0.388649 GGCCATATACCTCGCGACAG 60.389 60.000 3.71 1.42 0.00 3.51
109 110 0.314302 GCCATATACCTCGCGACAGT 59.686 55.000 3.71 8.67 0.00 3.55
110 111 1.538512 GCCATATACCTCGCGACAGTA 59.461 52.381 3.71 10.90 0.00 2.74
111 112 2.667724 GCCATATACCTCGCGACAGTAC 60.668 54.545 3.71 0.00 0.00 2.73
112 113 2.095364 CCATATACCTCGCGACAGTACC 60.095 54.545 3.71 0.00 0.00 3.34
113 114 1.597742 TATACCTCGCGACAGTACCC 58.402 55.000 3.71 0.00 0.00 3.69
114 115 0.394762 ATACCTCGCGACAGTACCCA 60.395 55.000 3.71 0.00 0.00 4.51
115 116 0.608856 TACCTCGCGACAGTACCCAA 60.609 55.000 3.71 0.00 0.00 4.12
116 117 1.445582 CCTCGCGACAGTACCCAAC 60.446 63.158 3.71 0.00 0.00 3.77
117 118 1.287815 CTCGCGACAGTACCCAACA 59.712 57.895 3.71 0.00 0.00 3.33
118 119 0.732880 CTCGCGACAGTACCCAACAG 60.733 60.000 3.71 0.00 0.00 3.16
119 120 1.174078 TCGCGACAGTACCCAACAGA 61.174 55.000 3.71 0.00 0.00 3.41
120 121 0.108804 CGCGACAGTACCCAACAGAT 60.109 55.000 0.00 0.00 0.00 2.90
121 122 1.133598 CGCGACAGTACCCAACAGATA 59.866 52.381 0.00 0.00 0.00 1.98
122 123 2.794981 CGCGACAGTACCCAACAGATAG 60.795 54.545 0.00 0.00 0.00 2.08
123 124 2.165845 GCGACAGTACCCAACAGATAGT 59.834 50.000 0.00 0.00 0.00 2.12
124 125 3.734293 GCGACAGTACCCAACAGATAGTC 60.734 52.174 0.00 0.00 0.00 2.59
125 126 3.442625 CGACAGTACCCAACAGATAGTCA 59.557 47.826 0.00 0.00 0.00 3.41
126 127 4.674623 CGACAGTACCCAACAGATAGTCAC 60.675 50.000 0.00 0.00 0.00 3.67
127 128 4.417437 ACAGTACCCAACAGATAGTCACT 58.583 43.478 0.00 0.00 0.00 3.41
128 129 5.577100 ACAGTACCCAACAGATAGTCACTA 58.423 41.667 0.00 0.00 0.00 2.74
129 130 6.014647 ACAGTACCCAACAGATAGTCACTAA 58.985 40.000 0.00 0.00 0.00 2.24
130 131 6.668283 ACAGTACCCAACAGATAGTCACTAAT 59.332 38.462 0.00 0.00 0.00 1.73
131 132 7.147880 ACAGTACCCAACAGATAGTCACTAATC 60.148 40.741 0.00 0.00 0.00 1.75
132 133 5.615925 ACCCAACAGATAGTCACTAATCC 57.384 43.478 0.00 0.00 0.00 3.01
133 134 4.409247 ACCCAACAGATAGTCACTAATCCC 59.591 45.833 0.00 0.00 0.00 3.85
134 135 4.656112 CCCAACAGATAGTCACTAATCCCT 59.344 45.833 0.00 0.00 0.00 4.20
135 136 5.839063 CCCAACAGATAGTCACTAATCCCTA 59.161 44.000 0.00 0.00 0.00 3.53
136 137 6.498651 CCCAACAGATAGTCACTAATCCCTAT 59.501 42.308 0.00 0.00 0.00 2.57
137 138 7.382110 CCAACAGATAGTCACTAATCCCTATG 58.618 42.308 0.00 0.00 0.00 2.23
138 139 7.233553 CCAACAGATAGTCACTAATCCCTATGA 59.766 40.741 0.00 0.00 0.00 2.15
139 140 8.811017 CAACAGATAGTCACTAATCCCTATGAT 58.189 37.037 0.00 0.00 34.22 2.45
141 142 9.693739 ACAGATAGTCACTAATCCCTATGATAG 57.306 37.037 0.00 0.00 31.83 2.08
142 143 9.913310 CAGATAGTCACTAATCCCTATGATAGA 57.087 37.037 0.00 0.00 31.83 1.98
146 147 8.644374 AGTCACTAATCCCTATGATAGAAGAC 57.356 38.462 0.00 0.00 31.83 3.01
147 148 8.228206 AGTCACTAATCCCTATGATAGAAGACA 58.772 37.037 0.00 0.00 31.83 3.41
148 149 8.301002 GTCACTAATCCCTATGATAGAAGACAC 58.699 40.741 0.00 0.00 31.83 3.67
149 150 8.004801 TCACTAATCCCTATGATAGAAGACACA 58.995 37.037 0.00 0.00 31.83 3.72
150 151 8.642432 CACTAATCCCTATGATAGAAGACACAA 58.358 37.037 0.00 0.00 31.83 3.33
151 152 8.643324 ACTAATCCCTATGATAGAAGACACAAC 58.357 37.037 0.00 0.00 31.83 3.32
152 153 7.437713 AATCCCTATGATAGAAGACACAACA 57.562 36.000 0.00 0.00 31.83 3.33
153 154 7.623999 ATCCCTATGATAGAAGACACAACAT 57.376 36.000 0.00 0.00 0.00 2.71
154 155 8.727100 ATCCCTATGATAGAAGACACAACATA 57.273 34.615 0.00 0.00 0.00 2.29
155 156 8.547481 TCCCTATGATAGAAGACACAACATAA 57.453 34.615 0.00 0.00 0.00 1.90
156 157 8.988060 TCCCTATGATAGAAGACACAACATAAA 58.012 33.333 0.00 0.00 0.00 1.40
157 158 9.046296 CCCTATGATAGAAGACACAACATAAAC 57.954 37.037 0.00 0.00 0.00 2.01
158 159 8.755941 CCTATGATAGAAGACACAACATAAACG 58.244 37.037 0.00 0.00 0.00 3.60
159 160 9.516314 CTATGATAGAAGACACAACATAAACGA 57.484 33.333 0.00 0.00 0.00 3.85
160 161 8.771920 ATGATAGAAGACACAACATAAACGAA 57.228 30.769 0.00 0.00 0.00 3.85
161 162 8.596271 TGATAGAAGACACAACATAAACGAAA 57.404 30.769 0.00 0.00 0.00 3.46
162 163 9.047371 TGATAGAAGACACAACATAAACGAAAA 57.953 29.630 0.00 0.00 0.00 2.29
163 164 9.872757 GATAGAAGACACAACATAAACGAAAAA 57.127 29.630 0.00 0.00 0.00 1.94
166 167 9.659830 AGAAGACACAACATAAACGAAAAATAC 57.340 29.630 0.00 0.00 0.00 1.89
167 168 9.440784 GAAGACACAACATAAACGAAAAATACA 57.559 29.630 0.00 0.00 0.00 2.29
168 169 8.776680 AGACACAACATAAACGAAAAATACAC 57.223 30.769 0.00 0.00 0.00 2.90
169 170 8.399425 AGACACAACATAAACGAAAAATACACA 58.601 29.630 0.00 0.00 0.00 3.72
170 171 8.912787 ACACAACATAAACGAAAAATACACAA 57.087 26.923 0.00 0.00 0.00 3.33
171 172 8.800031 ACACAACATAAACGAAAAATACACAAC 58.200 29.630 0.00 0.00 0.00 3.32
172 173 9.015577 CACAACATAAACGAAAAATACACAACT 57.984 29.630 0.00 0.00 0.00 3.16
173 174 9.228636 ACAACATAAACGAAAAATACACAACTC 57.771 29.630 0.00 0.00 0.00 3.01
174 175 8.406716 CAACATAAACGAAAAATACACAACTCG 58.593 33.333 0.00 0.00 0.00 4.18
175 176 7.073265 ACATAAACGAAAAATACACAACTCGG 58.927 34.615 0.00 0.00 0.00 4.63
176 177 5.738118 AAACGAAAAATACACAACTCGGA 57.262 34.783 0.00 0.00 0.00 4.55
177 178 5.738118 AACGAAAAATACACAACTCGGAA 57.262 34.783 0.00 0.00 0.00 4.30
178 179 5.338614 ACGAAAAATACACAACTCGGAAG 57.661 39.130 0.00 0.00 0.00 3.46
179 180 4.148891 CGAAAAATACACAACTCGGAAGC 58.851 43.478 0.00 0.00 0.00 3.86
180 181 4.084013 CGAAAAATACACAACTCGGAAGCT 60.084 41.667 0.00 0.00 0.00 3.74
181 182 5.119588 CGAAAAATACACAACTCGGAAGCTA 59.880 40.000 0.00 0.00 0.00 3.32
182 183 5.857822 AAAATACACAACTCGGAAGCTAC 57.142 39.130 0.00 0.00 0.00 3.58
183 184 2.624316 TACACAACTCGGAAGCTACG 57.376 50.000 4.50 4.50 0.00 3.51
184 185 0.666577 ACACAACTCGGAAGCTACGC 60.667 55.000 5.91 0.00 0.00 4.42
185 186 1.080025 ACAACTCGGAAGCTACGCC 60.080 57.895 5.91 0.00 0.00 5.68
186 187 1.215647 CAACTCGGAAGCTACGCCT 59.784 57.895 5.91 0.00 0.00 5.52
187 188 0.389948 CAACTCGGAAGCTACGCCTT 60.390 55.000 5.91 0.00 0.00 4.35
188 189 0.320697 AACTCGGAAGCTACGCCTTT 59.679 50.000 5.91 0.00 0.00 3.11
189 190 1.180029 ACTCGGAAGCTACGCCTTTA 58.820 50.000 5.91 0.00 0.00 1.85
190 191 1.547372 ACTCGGAAGCTACGCCTTTAA 59.453 47.619 5.91 0.00 0.00 1.52
191 192 2.194271 CTCGGAAGCTACGCCTTTAAG 58.806 52.381 5.91 0.00 0.00 1.85
192 193 1.820519 TCGGAAGCTACGCCTTTAAGA 59.179 47.619 5.91 0.00 0.00 2.10
193 194 2.231964 TCGGAAGCTACGCCTTTAAGAA 59.768 45.455 5.91 0.00 0.00 2.52
194 195 2.603560 CGGAAGCTACGCCTTTAAGAAG 59.396 50.000 0.00 0.00 0.00 2.85
204 205 2.739293 CTTTAAGAAGGAATCGCCGC 57.261 50.000 0.00 0.00 43.43 6.53
205 206 2.006888 CTTTAAGAAGGAATCGCCGCA 58.993 47.619 0.00 0.00 43.43 5.69
206 207 1.365699 TTAAGAAGGAATCGCCGCAC 58.634 50.000 0.00 0.00 43.43 5.34
207 208 0.804544 TAAGAAGGAATCGCCGCACG 60.805 55.000 0.00 0.00 43.43 5.34
208 209 2.781595 AAGAAGGAATCGCCGCACGT 62.782 55.000 0.00 0.00 44.19 4.49
209 210 3.083600 GAAGGAATCGCCGCACGTG 62.084 63.158 12.28 12.28 44.19 4.49
220 221 2.022346 GCACGTGCGCTGATGATG 59.978 61.111 26.77 0.00 0.00 3.07
221 222 2.705220 CACGTGCGCTGATGATGG 59.295 61.111 9.73 0.00 0.00 3.51
222 223 3.197790 ACGTGCGCTGATGATGGC 61.198 61.111 9.73 0.00 0.00 4.40
228 229 4.040068 GCTGATGATGGCGAGTCC 57.960 61.111 0.00 0.00 0.00 3.85
233 234 0.811616 GATGATGGCGAGTCCACCAC 60.812 60.000 1.71 0.00 42.45 4.16
234 235 1.552799 ATGATGGCGAGTCCACCACA 61.553 55.000 1.71 3.88 42.45 4.17
235 236 3.062852 ATGATGGCGAGTCCACCACAA 62.063 52.381 1.71 0.00 42.45 3.33
236 237 2.425592 TGGCGAGTCCACCACAAG 59.574 61.111 0.00 0.00 40.72 3.16
237 238 2.358737 GGCGAGTCCACCACAAGG 60.359 66.667 0.00 0.00 42.21 3.61
251 252 4.568152 CCACAAGGTTGAACTTCGAATT 57.432 40.909 0.00 0.00 0.00 2.17
252 253 4.537015 CCACAAGGTTGAACTTCGAATTC 58.463 43.478 0.00 5.90 0.00 2.17
253 254 4.275936 CCACAAGGTTGAACTTCGAATTCT 59.724 41.667 16.14 0.00 0.00 2.40
254 255 5.444122 CACAAGGTTGAACTTCGAATTCTC 58.556 41.667 16.14 7.68 0.00 2.87
255 256 5.007626 CACAAGGTTGAACTTCGAATTCTCA 59.992 40.000 16.14 9.63 0.00 3.27
256 257 5.765182 ACAAGGTTGAACTTCGAATTCTCAT 59.235 36.000 16.14 8.42 0.00 2.90
257 258 6.073003 ACAAGGTTGAACTTCGAATTCTCATC 60.073 38.462 16.14 10.57 0.00 2.92
258 259 4.938226 AGGTTGAACTTCGAATTCTCATCC 59.062 41.667 16.34 16.34 0.00 3.51
259 260 4.695455 GGTTGAACTTCGAATTCTCATCCA 59.305 41.667 17.86 0.30 0.00 3.41
260 261 5.390991 GGTTGAACTTCGAATTCTCATCCAC 60.391 44.000 17.86 9.42 0.00 4.02
261 262 4.893608 TGAACTTCGAATTCTCATCCACA 58.106 39.130 16.14 0.00 0.00 4.17
262 263 5.304778 TGAACTTCGAATTCTCATCCACAA 58.695 37.500 16.14 0.00 0.00 3.33
263 264 5.762711 TGAACTTCGAATTCTCATCCACAAA 59.237 36.000 16.14 0.00 0.00 2.83
264 265 5.869753 ACTTCGAATTCTCATCCACAAAG 57.130 39.130 0.00 0.00 0.00 2.77
265 266 4.154918 ACTTCGAATTCTCATCCACAAAGC 59.845 41.667 0.00 0.00 0.00 3.51
266 267 3.009723 TCGAATTCTCATCCACAAAGCC 58.990 45.455 3.52 0.00 0.00 4.35
267 268 2.749076 CGAATTCTCATCCACAAAGCCA 59.251 45.455 3.52 0.00 0.00 4.75
268 269 3.191162 CGAATTCTCATCCACAAAGCCAA 59.809 43.478 3.52 0.00 0.00 4.52
269 270 4.673580 CGAATTCTCATCCACAAAGCCAAG 60.674 45.833 3.52 0.00 0.00 3.61
270 271 2.957402 TCTCATCCACAAAGCCAAGT 57.043 45.000 0.00 0.00 0.00 3.16
271 272 3.228188 TCTCATCCACAAAGCCAAGTT 57.772 42.857 0.00 0.00 0.00 2.66
272 273 3.565307 TCTCATCCACAAAGCCAAGTTT 58.435 40.909 0.00 0.00 0.00 2.66
273 274 3.569701 TCTCATCCACAAAGCCAAGTTTC 59.430 43.478 0.00 0.00 0.00 2.78
274 275 3.295093 TCATCCACAAAGCCAAGTTTCA 58.705 40.909 0.00 0.00 0.00 2.69
275 276 3.703556 TCATCCACAAAGCCAAGTTTCAA 59.296 39.130 0.00 0.00 0.00 2.69
276 277 4.344679 TCATCCACAAAGCCAAGTTTCAAT 59.655 37.500 0.00 0.00 0.00 2.57
277 278 4.320608 TCCACAAAGCCAAGTTTCAATC 57.679 40.909 0.00 0.00 0.00 2.67
278 279 3.069443 TCCACAAAGCCAAGTTTCAATCC 59.931 43.478 0.00 0.00 0.00 3.01
279 280 3.181467 CCACAAAGCCAAGTTTCAATCCA 60.181 43.478 0.00 0.00 0.00 3.41
280 281 3.803778 CACAAAGCCAAGTTTCAATCCAC 59.196 43.478 0.00 0.00 0.00 4.02
281 282 3.181466 ACAAAGCCAAGTTTCAATCCACC 60.181 43.478 0.00 0.00 0.00 4.61
282 283 2.380064 AGCCAAGTTTCAATCCACCA 57.620 45.000 0.00 0.00 0.00 4.17
283 284 1.963515 AGCCAAGTTTCAATCCACCAC 59.036 47.619 0.00 0.00 0.00 4.16
284 285 1.000843 GCCAAGTTTCAATCCACCACC 59.999 52.381 0.00 0.00 0.00 4.61
285 286 2.597455 CCAAGTTTCAATCCACCACCT 58.403 47.619 0.00 0.00 0.00 4.00
286 287 2.965147 CCAAGTTTCAATCCACCACCTT 59.035 45.455 0.00 0.00 0.00 3.50
287 288 3.005791 CCAAGTTTCAATCCACCACCTTC 59.994 47.826 0.00 0.00 0.00 3.46
288 289 3.593442 AGTTTCAATCCACCACCTTCA 57.407 42.857 0.00 0.00 0.00 3.02
289 290 3.490348 AGTTTCAATCCACCACCTTCAG 58.510 45.455 0.00 0.00 0.00 3.02
290 291 1.909700 TTCAATCCACCACCTTCAGC 58.090 50.000 0.00 0.00 0.00 4.26
291 292 0.770499 TCAATCCACCACCTTCAGCA 59.230 50.000 0.00 0.00 0.00 4.41
292 293 1.144708 TCAATCCACCACCTTCAGCAA 59.855 47.619 0.00 0.00 0.00 3.91
293 294 1.542915 CAATCCACCACCTTCAGCAAG 59.457 52.381 0.00 0.00 0.00 4.01
302 303 3.289128 CTTCAGCAAGGACACGACA 57.711 52.632 0.00 0.00 0.00 4.35
303 304 0.861837 CTTCAGCAAGGACACGACAC 59.138 55.000 0.00 0.00 0.00 3.67
304 305 0.176910 TTCAGCAAGGACACGACACA 59.823 50.000 0.00 0.00 0.00 3.72
305 306 0.249447 TCAGCAAGGACACGACACAG 60.249 55.000 0.00 0.00 0.00 3.66
306 307 1.069765 AGCAAGGACACGACACAGG 59.930 57.895 0.00 0.00 0.00 4.00
307 308 2.607892 GCAAGGACACGACACAGGC 61.608 63.158 0.00 0.00 0.00 4.85
308 309 1.227527 CAAGGACACGACACAGGCA 60.228 57.895 0.00 0.00 0.00 4.75
309 310 1.227556 AAGGACACGACACAGGCAC 60.228 57.895 0.00 0.00 0.00 5.01
310 311 2.971428 AAGGACACGACACAGGCACG 62.971 60.000 0.00 0.00 0.00 5.34
311 312 3.702555 GACACGACACAGGCACGC 61.703 66.667 0.00 0.00 0.00 5.34
316 317 4.961511 GACACAGGCACGCGGTGA 62.962 66.667 17.43 0.00 35.23 4.02
319 320 4.314440 ACAGGCACGCGGTGACAT 62.314 61.111 12.47 0.00 45.35 3.06
320 321 2.125713 CAGGCACGCGGTGACATA 60.126 61.111 12.47 0.00 45.35 2.29
321 322 2.167219 CAGGCACGCGGTGACATAG 61.167 63.158 12.47 0.00 45.35 2.23
322 323 3.564027 GGCACGCGGTGACATAGC 61.564 66.667 12.47 0.69 41.94 2.97
323 324 3.564027 GCACGCGGTGACATAGCC 61.564 66.667 12.47 0.00 35.23 3.93
324 325 2.184322 CACGCGGTGACATAGCCT 59.816 61.111 12.47 0.00 35.23 4.58
325 326 2.167219 CACGCGGTGACATAGCCTG 61.167 63.158 12.47 0.00 35.23 4.85
326 327 2.348104 ACGCGGTGACATAGCCTGA 61.348 57.895 12.47 0.00 0.00 3.86
327 328 1.068083 CGCGGTGACATAGCCTGAT 59.932 57.895 0.00 0.00 0.00 2.90
328 329 0.941463 CGCGGTGACATAGCCTGATC 60.941 60.000 0.00 0.00 0.00 2.92
329 330 0.104855 GCGGTGACATAGCCTGATCA 59.895 55.000 0.00 0.00 0.00 2.92
330 331 1.473257 GCGGTGACATAGCCTGATCAA 60.473 52.381 0.00 0.00 0.00 2.57
331 332 2.905075 CGGTGACATAGCCTGATCAAA 58.095 47.619 0.00 0.00 0.00 2.69
332 333 2.868583 CGGTGACATAGCCTGATCAAAG 59.131 50.000 0.00 0.00 0.00 2.77
333 334 3.430790 CGGTGACATAGCCTGATCAAAGA 60.431 47.826 0.00 0.00 0.00 2.52
334 335 4.712476 GGTGACATAGCCTGATCAAAGAT 58.288 43.478 0.00 0.00 0.00 2.40
335 336 4.754114 GGTGACATAGCCTGATCAAAGATC 59.246 45.833 0.00 0.15 0.00 2.75
336 337 5.454471 GGTGACATAGCCTGATCAAAGATCT 60.454 44.000 8.32 0.00 0.00 2.75
337 338 6.054295 GTGACATAGCCTGATCAAAGATCTT 58.946 40.000 0.88 0.88 0.00 2.40
338 339 6.018098 GTGACATAGCCTGATCAAAGATCTTG 60.018 42.308 9.17 3.74 0.00 3.02
339 340 5.999044 ACATAGCCTGATCAAAGATCTTGT 58.001 37.500 9.17 0.00 0.00 3.16
340 341 5.821470 ACATAGCCTGATCAAAGATCTTGTG 59.179 40.000 9.17 9.63 0.00 3.33
341 342 4.298103 AGCCTGATCAAAGATCTTGTGT 57.702 40.909 9.17 0.00 0.00 3.72
342 343 4.660168 AGCCTGATCAAAGATCTTGTGTT 58.340 39.130 9.17 5.05 0.00 3.32
343 344 5.075493 AGCCTGATCAAAGATCTTGTGTTT 58.925 37.500 9.17 2.98 0.00 2.83
344 345 5.182760 AGCCTGATCAAAGATCTTGTGTTTC 59.817 40.000 9.17 10.84 0.00 2.78
345 346 5.620879 GCCTGATCAAAGATCTTGTGTTTCC 60.621 44.000 9.17 0.00 0.00 3.13
346 347 5.474532 CCTGATCAAAGATCTTGTGTTTCCA 59.525 40.000 9.17 1.03 0.00 3.53
347 348 6.317789 TGATCAAAGATCTTGTGTTTCCAC 57.682 37.500 9.17 0.00 42.19 4.02
348 349 5.241506 TGATCAAAGATCTTGTGTTTCCACC 59.758 40.000 9.17 0.00 41.09 4.61
349 350 3.563808 TCAAAGATCTTGTGTTTCCACCG 59.436 43.478 9.17 0.00 41.09 4.94
350 351 2.185004 AGATCTTGTGTTTCCACCGG 57.815 50.000 0.00 0.00 41.09 5.28
351 352 1.697432 AGATCTTGTGTTTCCACCGGA 59.303 47.619 9.46 0.00 41.09 5.14
352 353 2.076863 GATCTTGTGTTTCCACCGGAG 58.923 52.381 9.46 0.00 41.09 4.63
353 354 0.834612 TCTTGTGTTTCCACCGGAGT 59.165 50.000 9.46 0.00 41.09 3.85
354 355 0.944386 CTTGTGTTTCCACCGGAGTG 59.056 55.000 9.46 0.00 44.12 3.51
355 356 1.098712 TTGTGTTTCCACCGGAGTGC 61.099 55.000 9.46 0.00 43.09 4.40
356 357 1.525077 GTGTTTCCACCGGAGTGCA 60.525 57.895 9.46 0.00 43.09 4.57
357 358 0.889186 GTGTTTCCACCGGAGTGCAT 60.889 55.000 9.46 0.00 43.09 3.96
358 359 0.888736 TGTTTCCACCGGAGTGCATG 60.889 55.000 9.46 0.00 43.09 4.06
359 360 0.605319 GTTTCCACCGGAGTGCATGA 60.605 55.000 9.46 0.00 43.09 3.07
360 361 0.109532 TTTCCACCGGAGTGCATGAA 59.890 50.000 9.46 0.00 43.09 2.57
361 362 0.605319 TTCCACCGGAGTGCATGAAC 60.605 55.000 9.46 0.00 43.09 3.18
362 363 1.003355 CCACCGGAGTGCATGAACT 60.003 57.895 9.46 5.86 43.09 3.01
363 364 1.021390 CCACCGGAGTGCATGAACTC 61.021 60.000 23.89 23.89 44.91 3.01
364 365 1.079819 ACCGGAGTGCATGAACTCG 60.080 57.895 24.69 19.34 46.31 4.18
365 366 1.079819 CCGGAGTGCATGAACTCGT 60.080 57.895 24.69 0.00 46.31 4.18
366 367 1.078759 CCGGAGTGCATGAACTCGTC 61.079 60.000 24.69 12.82 46.31 4.20
367 368 0.388520 CGGAGTGCATGAACTCGTCA 60.389 55.000 24.69 0.00 46.31 4.35
369 370 2.350522 GGAGTGCATGAACTCGTCATT 58.649 47.619 24.69 0.00 45.13 2.57
370 371 2.094894 GGAGTGCATGAACTCGTCATTG 59.905 50.000 24.69 0.00 45.13 2.82
371 372 2.995939 GAGTGCATGAACTCGTCATTGA 59.004 45.455 18.21 0.00 45.13 2.57
372 373 3.402110 AGTGCATGAACTCGTCATTGAA 58.598 40.909 0.00 0.00 45.13 2.69
373 374 3.434641 AGTGCATGAACTCGTCATTGAAG 59.565 43.478 0.00 0.00 45.13 3.02
374 375 2.160219 TGCATGAACTCGTCATTGAAGC 59.840 45.455 0.00 0.00 45.13 3.86
375 376 2.785681 GCATGAACTCGTCATTGAAGCG 60.786 50.000 0.00 0.00 45.13 4.68
376 377 1.428448 TGAACTCGTCATTGAAGCGG 58.572 50.000 0.00 0.00 0.00 5.52
377 378 1.270094 TGAACTCGTCATTGAAGCGGT 60.270 47.619 0.00 0.00 0.00 5.68
378 379 1.390463 GAACTCGTCATTGAAGCGGTC 59.610 52.381 0.00 0.00 0.00 4.79
379 380 0.603569 ACTCGTCATTGAAGCGGTCT 59.396 50.000 0.00 0.00 0.00 3.85
380 381 0.994995 CTCGTCATTGAAGCGGTCTG 59.005 55.000 0.00 0.00 0.00 3.51
381 382 0.317160 TCGTCATTGAAGCGGTCTGT 59.683 50.000 0.00 0.00 0.00 3.41
382 383 1.542472 TCGTCATTGAAGCGGTCTGTA 59.458 47.619 0.00 0.00 0.00 2.74
383 384 1.654105 CGTCATTGAAGCGGTCTGTAC 59.346 52.381 0.00 0.00 0.00 2.90
384 385 2.000447 GTCATTGAAGCGGTCTGTACC 59.000 52.381 0.00 0.00 42.95 3.34
393 394 2.506065 GGTCTGTACCATCCGCTCT 58.494 57.895 0.00 0.00 45.98 4.09
394 395 0.824759 GGTCTGTACCATCCGCTCTT 59.175 55.000 0.00 0.00 45.98 2.85
395 396 2.029623 GGTCTGTACCATCCGCTCTTA 58.970 52.381 0.00 0.00 45.98 2.10
396 397 2.628657 GGTCTGTACCATCCGCTCTTAT 59.371 50.000 0.00 0.00 45.98 1.73
397 398 3.305471 GGTCTGTACCATCCGCTCTTATC 60.305 52.174 0.00 0.00 45.98 1.75
398 399 2.891580 TCTGTACCATCCGCTCTTATCC 59.108 50.000 0.00 0.00 0.00 2.59
399 400 1.611977 TGTACCATCCGCTCTTATCCG 59.388 52.381 0.00 0.00 0.00 4.18
400 401 1.612463 GTACCATCCGCTCTTATCCGT 59.388 52.381 0.00 0.00 0.00 4.69
401 402 0.674534 ACCATCCGCTCTTATCCGTC 59.325 55.000 0.00 0.00 0.00 4.79
402 403 0.962489 CCATCCGCTCTTATCCGTCT 59.038 55.000 0.00 0.00 0.00 4.18
403 404 2.160205 CCATCCGCTCTTATCCGTCTA 58.840 52.381 0.00 0.00 0.00 2.59
404 405 2.095161 CCATCCGCTCTTATCCGTCTAC 60.095 54.545 0.00 0.00 0.00 2.59
405 406 1.602311 TCCGCTCTTATCCGTCTACC 58.398 55.000 0.00 0.00 0.00 3.18
406 407 1.134007 TCCGCTCTTATCCGTCTACCA 60.134 52.381 0.00 0.00 0.00 3.25
407 408 1.679680 CCGCTCTTATCCGTCTACCAA 59.320 52.381 0.00 0.00 0.00 3.67
408 409 2.543238 CCGCTCTTATCCGTCTACCAAC 60.543 54.545 0.00 0.00 0.00 3.77
409 410 2.098607 CGCTCTTATCCGTCTACCAACA 59.901 50.000 0.00 0.00 0.00 3.33
410 411 3.445857 GCTCTTATCCGTCTACCAACAC 58.554 50.000 0.00 0.00 0.00 3.32
411 412 3.737355 GCTCTTATCCGTCTACCAACACC 60.737 52.174 0.00 0.00 0.00 4.16
412 413 3.700038 CTCTTATCCGTCTACCAACACCT 59.300 47.826 0.00 0.00 0.00 4.00
413 414 3.698040 TCTTATCCGTCTACCAACACCTC 59.302 47.826 0.00 0.00 0.00 3.85
414 415 0.815734 ATCCGTCTACCAACACCTCG 59.184 55.000 0.00 0.00 0.00 4.63
415 416 0.250858 TCCGTCTACCAACACCTCGA 60.251 55.000 0.00 0.00 0.00 4.04
416 417 0.815734 CCGTCTACCAACACCTCGAT 59.184 55.000 0.00 0.00 0.00 3.59
417 418 2.019249 CCGTCTACCAACACCTCGATA 58.981 52.381 0.00 0.00 0.00 2.92
418 419 2.033049 CCGTCTACCAACACCTCGATAG 59.967 54.545 0.00 0.00 0.00 2.08
419 420 2.541178 CGTCTACCAACACCTCGATAGC 60.541 54.545 0.00 0.00 0.00 2.97
420 421 2.029623 TCTACCAACACCTCGATAGCC 58.970 52.381 0.00 0.00 0.00 3.93
421 422 0.742505 TACCAACACCTCGATAGCCG 59.257 55.000 0.00 0.00 40.25 5.52
422 423 1.227263 CCAACACCTCGATAGCCGG 60.227 63.158 0.00 0.00 39.14 6.13
423 424 1.672854 CCAACACCTCGATAGCCGGA 61.673 60.000 5.05 0.00 39.14 5.14
424 425 0.389391 CAACACCTCGATAGCCGGAT 59.611 55.000 5.05 0.00 39.14 4.18
425 426 1.611977 CAACACCTCGATAGCCGGATA 59.388 52.381 5.05 2.29 39.14 2.59
426 427 1.245732 ACACCTCGATAGCCGGATAC 58.754 55.000 5.05 0.00 39.14 2.24
427 428 0.526662 CACCTCGATAGCCGGATACC 59.473 60.000 5.05 0.00 39.14 2.73
428 429 0.404812 ACCTCGATAGCCGGATACCT 59.595 55.000 5.05 0.00 39.14 3.08
429 430 1.096416 CCTCGATAGCCGGATACCTC 58.904 60.000 5.05 0.00 39.14 3.85
430 431 1.340211 CCTCGATAGCCGGATACCTCT 60.340 57.143 5.05 0.00 39.14 3.69
431 432 1.740585 CTCGATAGCCGGATACCTCTG 59.259 57.143 5.05 0.00 39.14 3.35
432 433 1.350019 TCGATAGCCGGATACCTCTGA 59.650 52.381 5.05 0.00 39.14 3.27
433 434 2.160205 CGATAGCCGGATACCTCTGAA 58.840 52.381 5.05 0.00 33.91 3.02
434 435 2.557056 CGATAGCCGGATACCTCTGAAA 59.443 50.000 5.05 0.00 33.91 2.69
435 436 3.005472 CGATAGCCGGATACCTCTGAAAA 59.995 47.826 5.05 0.00 33.91 2.29
436 437 4.500887 CGATAGCCGGATACCTCTGAAAAA 60.501 45.833 5.05 0.00 33.91 1.94
459 460 8.791355 AAAAACAACATAAGACAAATACGTCC 57.209 30.769 0.00 0.00 36.52 4.79
460 461 6.490566 AACAACATAAGACAAATACGTCCC 57.509 37.500 0.00 0.00 36.52 4.46
461 462 5.553123 ACAACATAAGACAAATACGTCCCA 58.447 37.500 0.00 0.00 36.52 4.37
462 463 6.177610 ACAACATAAGACAAATACGTCCCAT 58.822 36.000 0.00 0.00 36.52 4.00
463 464 7.332557 ACAACATAAGACAAATACGTCCCATA 58.667 34.615 0.00 0.00 36.52 2.74
464 465 7.279313 ACAACATAAGACAAATACGTCCCATAC 59.721 37.037 0.00 0.00 36.52 2.39
465 466 6.285990 ACATAAGACAAATACGTCCCATACC 58.714 40.000 0.00 0.00 36.52 2.73
466 467 3.447918 AGACAAATACGTCCCATACCG 57.552 47.619 0.00 0.00 36.52 4.02
467 468 1.862827 GACAAATACGTCCCATACCGC 59.137 52.381 0.00 0.00 0.00 5.68
468 469 1.483415 ACAAATACGTCCCATACCGCT 59.517 47.619 0.00 0.00 0.00 5.52
469 470 2.093341 ACAAATACGTCCCATACCGCTT 60.093 45.455 0.00 0.00 0.00 4.68
470 471 2.234300 AATACGTCCCATACCGCTTG 57.766 50.000 0.00 0.00 0.00 4.01
471 472 0.249741 ATACGTCCCATACCGCTTGC 60.250 55.000 0.00 0.00 0.00 4.01
472 473 2.300850 TACGTCCCATACCGCTTGCC 62.301 60.000 0.00 0.00 0.00 4.52
473 474 2.590092 GTCCCATACCGCTTGCCT 59.410 61.111 0.00 0.00 0.00 4.75
474 475 1.523938 GTCCCATACCGCTTGCCTC 60.524 63.158 0.00 0.00 0.00 4.70
475 476 2.203209 CCCATACCGCTTGCCTCC 60.203 66.667 0.00 0.00 0.00 4.30
476 477 2.203209 CCATACCGCTTGCCTCCC 60.203 66.667 0.00 0.00 0.00 4.30
477 478 2.588877 CATACCGCTTGCCTCCCG 60.589 66.667 0.00 0.00 0.00 5.14
478 479 4.547367 ATACCGCTTGCCTCCCGC 62.547 66.667 0.00 0.00 38.31 6.13
482 483 4.148825 CGCTTGCCTCCCGCTACT 62.149 66.667 0.00 0.00 38.78 2.57
483 484 2.782222 CGCTTGCCTCCCGCTACTA 61.782 63.158 0.00 0.00 38.78 1.82
484 485 1.749033 GCTTGCCTCCCGCTACTAT 59.251 57.895 0.00 0.00 38.78 2.12
485 486 0.319986 GCTTGCCTCCCGCTACTATC 60.320 60.000 0.00 0.00 38.78 2.08
486 487 0.318762 CTTGCCTCCCGCTACTATCC 59.681 60.000 0.00 0.00 38.78 2.59
487 488 1.461091 TTGCCTCCCGCTACTATCCG 61.461 60.000 0.00 0.00 38.78 4.18
488 489 1.602888 GCCTCCCGCTACTATCCGA 60.603 63.158 0.00 0.00 0.00 4.55
489 490 1.864725 GCCTCCCGCTACTATCCGAC 61.865 65.000 0.00 0.00 0.00 4.79
490 491 0.536687 CCTCCCGCTACTATCCGACA 60.537 60.000 0.00 0.00 0.00 4.35
491 492 0.875728 CTCCCGCTACTATCCGACAG 59.124 60.000 0.00 0.00 0.00 3.51
492 493 0.471191 TCCCGCTACTATCCGACAGA 59.529 55.000 0.00 0.00 0.00 3.41
493 494 0.592148 CCCGCTACTATCCGACAGAC 59.408 60.000 0.00 0.00 0.00 3.51
494 495 1.306148 CCGCTACTATCCGACAGACA 58.694 55.000 0.00 0.00 0.00 3.41
495 496 1.002684 CCGCTACTATCCGACAGACAC 60.003 57.143 0.00 0.00 0.00 3.67
496 497 1.669265 CGCTACTATCCGACAGACACA 59.331 52.381 0.00 0.00 0.00 3.72
497 498 2.286477 CGCTACTATCCGACAGACACAG 60.286 54.545 0.00 0.00 0.00 3.66
498 499 2.943690 GCTACTATCCGACAGACACAGA 59.056 50.000 0.00 0.00 0.00 3.41
499 500 3.242804 GCTACTATCCGACAGACACAGAC 60.243 52.174 0.00 0.00 0.00 3.51
500 501 3.074675 ACTATCCGACAGACACAGACT 57.925 47.619 0.00 0.00 0.00 3.24
501 502 4.217836 ACTATCCGACAGACACAGACTA 57.782 45.455 0.00 0.00 0.00 2.59
502 503 4.586884 ACTATCCGACAGACACAGACTAA 58.413 43.478 0.00 0.00 0.00 2.24
503 504 5.008331 ACTATCCGACAGACACAGACTAAA 58.992 41.667 0.00 0.00 0.00 1.85
504 505 3.637998 TCCGACAGACACAGACTAAAC 57.362 47.619 0.00 0.00 0.00 2.01
505 506 3.220110 TCCGACAGACACAGACTAAACT 58.780 45.455 0.00 0.00 0.00 2.66
506 507 3.252701 TCCGACAGACACAGACTAAACTC 59.747 47.826 0.00 0.00 0.00 3.01
507 508 3.227147 CGACAGACACAGACTAAACTCG 58.773 50.000 0.00 0.00 0.00 4.18
508 509 3.059120 CGACAGACACAGACTAAACTCGA 60.059 47.826 0.00 0.00 0.00 4.04
794 840 3.199190 CTCGCTCGCCTCGTCTCT 61.199 66.667 0.00 0.00 0.00 3.10
795 841 3.163110 CTCGCTCGCCTCGTCTCTC 62.163 68.421 0.00 0.00 0.00 3.20
796 842 3.199190 CGCTCGCCTCGTCTCTCT 61.199 66.667 0.00 0.00 0.00 3.10
797 843 2.713154 GCTCGCCTCGTCTCTCTC 59.287 66.667 0.00 0.00 0.00 3.20
798 844 1.817941 GCTCGCCTCGTCTCTCTCT 60.818 63.158 0.00 0.00 0.00 3.10
799 845 1.772063 GCTCGCCTCGTCTCTCTCTC 61.772 65.000 0.00 0.00 0.00 3.20
800 846 0.179084 CTCGCCTCGTCTCTCTCTCT 60.179 60.000 0.00 0.00 0.00 3.10
801 847 0.179094 TCGCCTCGTCTCTCTCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
802 848 0.179084 CGCCTCGTCTCTCTCTCTCT 60.179 60.000 0.00 0.00 0.00 3.10
803 849 1.583054 GCCTCGTCTCTCTCTCTCTC 58.417 60.000 0.00 0.00 0.00 3.20
804 850 1.139058 GCCTCGTCTCTCTCTCTCTCT 59.861 57.143 0.00 0.00 0.00 3.10
805 851 2.803492 GCCTCGTCTCTCTCTCTCTCTC 60.803 59.091 0.00 0.00 0.00 3.20
806 852 2.695666 CCTCGTCTCTCTCTCTCTCTCT 59.304 54.545 0.00 0.00 0.00 3.10
807 853 3.243569 CCTCGTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
848 894 6.614657 TCTCTCTCTCTCTCTCTCTCTCATA 58.385 44.000 0.00 0.00 0.00 2.15
849 895 7.244558 TCTCTCTCTCTCTCTCTCTCTCATAT 58.755 42.308 0.00 0.00 0.00 1.78
911 965 0.534873 ACACACAAGGCAAAACCACC 59.465 50.000 0.00 0.00 43.14 4.61
912 966 0.179086 CACACAAGGCAAAACCACCC 60.179 55.000 0.00 0.00 43.14 4.61
946 1025 7.025485 AGCTTTCTTTCTCAGAGAAAAACAG 57.975 36.000 23.16 15.34 42.95 3.16
997 1076 3.794028 CCATCAAGAAGATCGACGAGAAC 59.206 47.826 3.01 0.00 33.72 3.01
1525 1605 7.042051 GGAATGACAAAGCTGCGTATCTTTATA 60.042 37.037 2.00 0.00 31.89 0.98
1526 1606 7.969536 ATGACAAAGCTGCGTATCTTTATAT 57.030 32.000 2.00 0.00 31.89 0.86
1595 1680 2.540931 TCAGCACCGAGTTTACGTTTTC 59.459 45.455 0.00 0.00 0.00 2.29
1640 1725 4.622456 CACAAACGGCCACGGCAC 62.622 66.667 10.83 0.00 46.48 5.01
1701 1787 4.795469 TCTTTTTCTCCCTAAAACCGGTT 58.205 39.130 15.86 15.86 0.00 4.44
1712 1799 0.182775 AAACCGGTTGGCAGAGTCTT 59.817 50.000 23.08 0.00 39.70 3.01
1865 1954 5.937187 ACAAACACAAATTTTGCCAAGTTC 58.063 33.333 9.04 0.00 37.45 3.01
1873 1962 2.738587 TTTGCCAAGTTCCTACCACA 57.261 45.000 0.00 0.00 0.00 4.17
1877 1966 2.910319 TGCCAAGTTCCTACCACACTAT 59.090 45.455 0.00 0.00 0.00 2.12
1888 1977 2.193127 ACCACACTATTGGAATCCGGA 58.807 47.619 6.61 6.61 39.24 5.14
1911 2000 4.661993 TTTCACCGAGTTCAATTCATCG 57.338 40.909 0.00 0.00 35.02 3.84
1916 2005 2.205074 CGAGTTCAATTCATCGGGAGG 58.795 52.381 0.00 0.00 0.00 4.30
1940 2029 4.259970 CGAGTTGTTGATAATTGAGCTCCG 60.260 45.833 12.15 0.00 0.00 4.63
1962 2051 3.782244 GACGCGCAACTCAGCAGG 61.782 66.667 5.73 0.00 0.00 4.85
1968 2057 1.874562 GCAACTCAGCAGGCTTCAG 59.125 57.895 0.00 0.00 0.00 3.02
1973 2062 1.133976 ACTCAGCAGGCTTCAGTGTTT 60.134 47.619 2.57 0.00 0.00 2.83
1994 2084 1.076332 CCTAGTGCGAGGAAAAACGG 58.924 55.000 0.00 0.00 39.15 4.44
1996 2086 0.952010 TAGTGCGAGGAAAAACGGGC 60.952 55.000 0.00 0.00 0.00 6.13
1997 2087 2.112297 TGCGAGGAAAAACGGGCT 59.888 55.556 0.00 0.00 0.00 5.19
1999 2089 3.023591 GCGAGGAAAAACGGGCTCG 62.024 63.158 3.27 3.27 43.02 5.03
2000 2090 2.388232 CGAGGAAAAACGGGCTCGG 61.388 63.158 12.42 0.00 41.39 4.63
2001 2091 2.671963 AGGAAAAACGGGCTCGGC 60.672 61.111 12.42 0.00 41.39 5.54
2002 2092 2.981350 GGAAAAACGGGCTCGGCA 60.981 61.111 12.42 0.00 41.39 5.69
2003 2093 2.557372 GGAAAAACGGGCTCGGCAA 61.557 57.895 12.42 0.00 41.39 4.52
2004 2094 1.360911 GAAAAACGGGCTCGGCAAA 59.639 52.632 12.42 0.00 41.39 3.68
2005 2095 0.249114 GAAAAACGGGCTCGGCAAAA 60.249 50.000 12.42 0.00 41.39 2.44
2042 2132 0.928229 GTCGCATATTCGCCGAGTTT 59.072 50.000 0.00 0.00 0.00 2.66
2047 2137 1.400142 CATATTCGCCGAGTTTTGCCA 59.600 47.619 0.00 0.00 0.00 4.92
2071 2161 5.658634 AGATATAAACTCAGACAGTGCCTGA 59.341 40.000 8.96 8.96 38.24 3.86
2117 2207 0.385751 CAGATGTGACGGCGGTCTAT 59.614 55.000 22.99 17.12 43.79 1.98
2124 2214 0.997196 GACGGCGGTCTATGTTTGTC 59.003 55.000 16.52 0.00 40.15 3.18
2131 2221 2.414138 CGGTCTATGTTTGTCGGGTTTC 59.586 50.000 0.00 0.00 0.00 2.78
2150 2240 1.689813 TCCACTAACGGAAACTCAGCA 59.310 47.619 0.00 0.00 29.93 4.41
2154 2244 4.023193 CCACTAACGGAAACTCAGCAAAAT 60.023 41.667 0.00 0.00 0.00 1.82
2157 2247 7.305474 CACTAACGGAAACTCAGCAAAATAAT 58.695 34.615 0.00 0.00 0.00 1.28
2158 2248 7.481798 CACTAACGGAAACTCAGCAAAATAATC 59.518 37.037 0.00 0.00 0.00 1.75
2159 2249 6.575162 AACGGAAACTCAGCAAAATAATCT 57.425 33.333 0.00 0.00 0.00 2.40
2160 2250 6.183309 ACGGAAACTCAGCAAAATAATCTC 57.817 37.500 0.00 0.00 0.00 2.75
2166 2259 9.481340 GAAACTCAGCAAAATAATCTCCTTTTT 57.519 29.630 0.00 0.00 0.00 1.94
2189 2282 9.453325 TTTTATTACAGAATTTCAACGTTCACC 57.547 29.630 0.00 0.00 0.00 4.02
2196 2289 6.147821 CAGAATTTCAACGTTCACCTCTATGT 59.852 38.462 0.00 0.00 0.00 2.29
2202 2295 1.828832 GTTCACCTCTATGTCGAGCG 58.171 55.000 0.00 0.00 0.00 5.03
2203 2296 0.100682 TTCACCTCTATGTCGAGCGC 59.899 55.000 0.00 0.00 0.00 5.92
2217 2310 0.091511 GAGCGCTCGTCGAGAAAAAC 59.908 55.000 26.11 6.59 41.67 2.43
2219 2312 1.779683 CGCTCGTCGAGAAAAACCC 59.220 57.895 26.11 5.14 41.67 4.11
2222 2315 1.337821 CTCGTCGAGAAAAACCCGAG 58.662 55.000 17.52 3.85 36.31 4.63
2224 2317 1.068748 TCGTCGAGAAAAACCCGAGAG 60.069 52.381 0.00 0.00 32.65 3.20
2235 2328 2.051334 ACCCGAGAGAGATCTGACAG 57.949 55.000 0.00 0.00 0.00 3.51
2288 2386 1.141053 GACGGTTGGGATTCCTATGCT 59.859 52.381 2.01 0.00 0.00 3.79
2295 2393 2.849294 GGATTCCTATGCTGAGTCCC 57.151 55.000 0.00 0.00 33.72 4.46
2301 2399 2.912956 TCCTATGCTGAGTCCCAAAACT 59.087 45.455 0.00 0.00 0.00 2.66
2312 2410 1.112916 CCCAAAACTCGGCAAAGGGT 61.113 55.000 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.057089 GCTGCTGGAGTTTACACTATTAATAAT 57.943 33.333 0.00 0.00 31.22 1.28
22 23 8.265055 AGCTGCTGGAGTTTACACTATTAATAA 58.735 33.333 0.00 0.00 31.22 1.40
23 24 7.710907 CAGCTGCTGGAGTTTACACTATTAATA 59.289 37.037 21.71 0.00 31.22 0.98
24 25 6.540189 CAGCTGCTGGAGTTTACACTATTAAT 59.460 38.462 21.71 0.00 31.22 1.40
25 26 5.874810 CAGCTGCTGGAGTTTACACTATTAA 59.125 40.000 21.71 0.00 31.22 1.40
26 27 5.186992 TCAGCTGCTGGAGTTTACACTATTA 59.813 40.000 27.79 1.19 31.22 0.98
27 28 4.020218 TCAGCTGCTGGAGTTTACACTATT 60.020 41.667 27.79 0.00 31.22 1.73
28 29 3.515502 TCAGCTGCTGGAGTTTACACTAT 59.484 43.478 27.79 0.00 31.22 2.12
29 30 2.897326 TCAGCTGCTGGAGTTTACACTA 59.103 45.455 27.79 2.51 31.22 2.74
30 31 1.694150 TCAGCTGCTGGAGTTTACACT 59.306 47.619 27.79 0.00 35.17 3.55
31 32 2.169832 TCAGCTGCTGGAGTTTACAC 57.830 50.000 27.79 0.00 31.51 2.90
32 33 2.158827 TGTTCAGCTGCTGGAGTTTACA 60.159 45.455 27.79 18.05 31.51 2.41
33 34 2.494059 TGTTCAGCTGCTGGAGTTTAC 58.506 47.619 27.79 16.09 31.51 2.01
34 35 2.878406 GTTGTTCAGCTGCTGGAGTTTA 59.122 45.455 27.79 6.09 31.51 2.01
35 36 1.678101 GTTGTTCAGCTGCTGGAGTTT 59.322 47.619 27.79 0.00 31.51 2.66
36 37 1.312815 GTTGTTCAGCTGCTGGAGTT 58.687 50.000 27.79 0.00 31.51 3.01
37 38 0.181114 TGTTGTTCAGCTGCTGGAGT 59.819 50.000 27.79 0.00 31.51 3.85
38 39 1.467734 GATGTTGTTCAGCTGCTGGAG 59.532 52.381 27.79 4.39 31.51 3.86
39 40 1.527034 GATGTTGTTCAGCTGCTGGA 58.473 50.000 27.79 18.74 31.51 3.86
40 41 0.167470 CGATGTTGTTCAGCTGCTGG 59.833 55.000 27.79 10.85 31.51 4.85
41 42 1.150827 TCGATGTTGTTCAGCTGCTG 58.849 50.000 23.31 23.31 0.00 4.41
42 43 2.005451 GATCGATGTTGTTCAGCTGCT 58.995 47.619 9.47 0.00 0.00 4.24
43 44 1.063174 GGATCGATGTTGTTCAGCTGC 59.937 52.381 9.47 0.00 0.00 5.25
44 45 2.349590 TGGATCGATGTTGTTCAGCTG 58.650 47.619 7.63 7.63 0.00 4.24
45 46 2.768253 TGGATCGATGTTGTTCAGCT 57.232 45.000 0.54 0.00 0.00 4.24
46 47 3.829886 TTTGGATCGATGTTGTTCAGC 57.170 42.857 0.54 0.00 0.00 4.26
66 67 7.323420 GCCTCAGTATTTATTTCCTGCTTTTT 58.677 34.615 0.00 0.00 0.00 1.94
67 68 6.127338 GGCCTCAGTATTTATTTCCTGCTTTT 60.127 38.462 0.00 0.00 0.00 2.27
68 69 5.360999 GGCCTCAGTATTTATTTCCTGCTTT 59.639 40.000 0.00 0.00 0.00 3.51
69 70 4.889995 GGCCTCAGTATTTATTTCCTGCTT 59.110 41.667 0.00 0.00 0.00 3.91
70 71 4.079787 TGGCCTCAGTATTTATTTCCTGCT 60.080 41.667 3.32 0.00 0.00 4.24
71 72 4.207165 TGGCCTCAGTATTTATTTCCTGC 58.793 43.478 3.32 0.00 0.00 4.85
72 73 9.167311 GTATATGGCCTCAGTATTTATTTCCTG 57.833 37.037 3.32 0.00 0.00 3.86
73 74 8.329502 GGTATATGGCCTCAGTATTTATTTCCT 58.670 37.037 3.32 0.00 0.00 3.36
74 75 8.329502 AGGTATATGGCCTCAGTATTTATTTCC 58.670 37.037 3.32 0.00 0.00 3.13
87 88 0.109226 GTCGCGAGGTATATGGCCTC 60.109 60.000 10.24 14.65 46.75 4.70
88 89 0.826256 TGTCGCGAGGTATATGGCCT 60.826 55.000 10.24 0.88 39.42 5.19
89 90 0.388649 CTGTCGCGAGGTATATGGCC 60.389 60.000 10.24 0.00 0.00 5.36
90 91 0.314302 ACTGTCGCGAGGTATATGGC 59.686 55.000 10.24 0.00 0.00 4.40
91 92 2.095364 GGTACTGTCGCGAGGTATATGG 60.095 54.545 10.24 0.00 0.00 2.74
92 93 2.095364 GGGTACTGTCGCGAGGTATATG 60.095 54.545 10.24 0.00 0.00 1.78
93 94 2.157738 GGGTACTGTCGCGAGGTATAT 58.842 52.381 10.24 0.00 0.00 0.86
94 95 1.134128 TGGGTACTGTCGCGAGGTATA 60.134 52.381 10.24 4.62 0.00 1.47
95 96 0.394762 TGGGTACTGTCGCGAGGTAT 60.395 55.000 10.24 0.00 0.00 2.73
96 97 0.608856 TTGGGTACTGTCGCGAGGTA 60.609 55.000 10.24 13.46 0.00 3.08
97 98 1.904865 TTGGGTACTGTCGCGAGGT 60.905 57.895 10.24 14.59 0.00 3.85
98 99 1.445582 GTTGGGTACTGTCGCGAGG 60.446 63.158 10.24 8.44 0.00 4.63
99 100 0.732880 CTGTTGGGTACTGTCGCGAG 60.733 60.000 10.24 0.00 0.00 5.03
100 101 1.174078 TCTGTTGGGTACTGTCGCGA 61.174 55.000 3.71 3.71 0.00 5.87
101 102 0.108804 ATCTGTTGGGTACTGTCGCG 60.109 55.000 0.00 0.00 0.00 5.87
102 103 2.165845 ACTATCTGTTGGGTACTGTCGC 59.834 50.000 0.00 0.00 0.00 5.19
103 104 3.442625 TGACTATCTGTTGGGTACTGTCG 59.557 47.826 0.00 0.00 0.00 4.35
104 105 4.463186 AGTGACTATCTGTTGGGTACTGTC 59.537 45.833 0.00 0.00 0.00 3.51
105 106 4.417437 AGTGACTATCTGTTGGGTACTGT 58.583 43.478 0.00 0.00 0.00 3.55
106 107 6.525578 TTAGTGACTATCTGTTGGGTACTG 57.474 41.667 0.00 0.00 0.00 2.74
107 108 6.324254 GGATTAGTGACTATCTGTTGGGTACT 59.676 42.308 0.00 0.00 0.00 2.73
108 109 6.462628 GGGATTAGTGACTATCTGTTGGGTAC 60.463 46.154 0.00 0.00 0.00 3.34
109 110 5.601313 GGGATTAGTGACTATCTGTTGGGTA 59.399 44.000 0.00 0.00 0.00 3.69
110 111 4.409247 GGGATTAGTGACTATCTGTTGGGT 59.591 45.833 0.00 0.00 0.00 4.51
111 112 4.656112 AGGGATTAGTGACTATCTGTTGGG 59.344 45.833 0.00 0.00 0.00 4.12
112 113 5.878406 AGGGATTAGTGACTATCTGTTGG 57.122 43.478 0.00 0.00 0.00 3.77
113 114 8.183104 TCATAGGGATTAGTGACTATCTGTTG 57.817 38.462 0.00 0.00 0.00 3.33
114 115 8.964533 ATCATAGGGATTAGTGACTATCTGTT 57.035 34.615 0.00 0.00 29.81 3.16
115 116 9.693739 CTATCATAGGGATTAGTGACTATCTGT 57.306 37.037 0.00 0.00 37.44 3.41
116 117 9.913310 TCTATCATAGGGATTAGTGACTATCTG 57.087 37.037 0.00 0.00 37.44 2.90
120 121 9.742144 GTCTTCTATCATAGGGATTAGTGACTA 57.258 37.037 0.00 0.00 37.44 2.59
121 122 8.228206 TGTCTTCTATCATAGGGATTAGTGACT 58.772 37.037 0.00 0.00 37.44 3.41
122 123 8.301002 GTGTCTTCTATCATAGGGATTAGTGAC 58.699 40.741 0.00 0.00 37.44 3.67
123 124 8.004801 TGTGTCTTCTATCATAGGGATTAGTGA 58.995 37.037 0.00 0.00 37.44 3.41
124 125 8.183104 TGTGTCTTCTATCATAGGGATTAGTG 57.817 38.462 0.00 0.00 37.44 2.74
125 126 8.643324 GTTGTGTCTTCTATCATAGGGATTAGT 58.357 37.037 0.00 0.00 37.44 2.24
126 127 8.642432 TGTTGTGTCTTCTATCATAGGGATTAG 58.358 37.037 0.00 0.00 37.44 1.73
127 128 8.547481 TGTTGTGTCTTCTATCATAGGGATTA 57.453 34.615 0.00 0.00 37.44 1.75
128 129 7.437713 TGTTGTGTCTTCTATCATAGGGATT 57.562 36.000 0.00 0.00 37.44 3.01
129 130 7.623999 ATGTTGTGTCTTCTATCATAGGGAT 57.376 36.000 0.00 0.00 40.14 3.85
130 131 8.547481 TTATGTTGTGTCTTCTATCATAGGGA 57.453 34.615 0.00 0.00 0.00 4.20
131 132 9.046296 GTTTATGTTGTGTCTTCTATCATAGGG 57.954 37.037 0.00 0.00 0.00 3.53
132 133 8.755941 CGTTTATGTTGTGTCTTCTATCATAGG 58.244 37.037 0.00 0.00 0.00 2.57
133 134 9.516314 TCGTTTATGTTGTGTCTTCTATCATAG 57.484 33.333 0.00 0.00 0.00 2.23
134 135 9.863845 TTCGTTTATGTTGTGTCTTCTATCATA 57.136 29.630 0.00 0.00 0.00 2.15
135 136 8.771920 TTCGTTTATGTTGTGTCTTCTATCAT 57.228 30.769 0.00 0.00 0.00 2.45
136 137 8.596271 TTTCGTTTATGTTGTGTCTTCTATCA 57.404 30.769 0.00 0.00 0.00 2.15
137 138 9.872757 TTTTTCGTTTATGTTGTGTCTTCTATC 57.127 29.630 0.00 0.00 0.00 2.08
140 141 9.659830 GTATTTTTCGTTTATGTTGTGTCTTCT 57.340 29.630 0.00 0.00 0.00 2.85
141 142 9.440784 TGTATTTTTCGTTTATGTTGTGTCTTC 57.559 29.630 0.00 0.00 0.00 2.87
142 143 9.228636 GTGTATTTTTCGTTTATGTTGTGTCTT 57.771 29.630 0.00 0.00 0.00 3.01
143 144 8.399425 TGTGTATTTTTCGTTTATGTTGTGTCT 58.601 29.630 0.00 0.00 0.00 3.41
144 145 8.549777 TGTGTATTTTTCGTTTATGTTGTGTC 57.450 30.769 0.00 0.00 0.00 3.67
145 146 8.800031 GTTGTGTATTTTTCGTTTATGTTGTGT 58.200 29.630 0.00 0.00 0.00 3.72
146 147 9.015577 AGTTGTGTATTTTTCGTTTATGTTGTG 57.984 29.630 0.00 0.00 0.00 3.33
147 148 9.228636 GAGTTGTGTATTTTTCGTTTATGTTGT 57.771 29.630 0.00 0.00 0.00 3.32
148 149 8.406716 CGAGTTGTGTATTTTTCGTTTATGTTG 58.593 33.333 0.00 0.00 0.00 3.33
149 150 7.588488 CCGAGTTGTGTATTTTTCGTTTATGTT 59.412 33.333 0.00 0.00 0.00 2.71
150 151 7.041916 TCCGAGTTGTGTATTTTTCGTTTATGT 60.042 33.333 0.00 0.00 0.00 2.29
151 152 7.292292 TCCGAGTTGTGTATTTTTCGTTTATG 58.708 34.615 0.00 0.00 0.00 1.90
152 153 7.424227 TCCGAGTTGTGTATTTTTCGTTTAT 57.576 32.000 0.00 0.00 0.00 1.40
153 154 6.841443 TCCGAGTTGTGTATTTTTCGTTTA 57.159 33.333 0.00 0.00 0.00 2.01
154 155 5.738118 TCCGAGTTGTGTATTTTTCGTTT 57.262 34.783 0.00 0.00 0.00 3.60
155 156 5.738118 TTCCGAGTTGTGTATTTTTCGTT 57.262 34.783 0.00 0.00 0.00 3.85
156 157 4.319261 GCTTCCGAGTTGTGTATTTTTCGT 60.319 41.667 0.00 0.00 0.00 3.85
157 158 4.084013 AGCTTCCGAGTTGTGTATTTTTCG 60.084 41.667 0.00 0.00 0.00 3.46
158 159 5.358298 AGCTTCCGAGTTGTGTATTTTTC 57.642 39.130 0.00 0.00 0.00 2.29
159 160 5.107220 CGTAGCTTCCGAGTTGTGTATTTTT 60.107 40.000 0.00 0.00 0.00 1.94
160 161 4.387862 CGTAGCTTCCGAGTTGTGTATTTT 59.612 41.667 0.00 0.00 0.00 1.82
161 162 3.924686 CGTAGCTTCCGAGTTGTGTATTT 59.075 43.478 0.00 0.00 0.00 1.40
162 163 3.508762 CGTAGCTTCCGAGTTGTGTATT 58.491 45.455 0.00 0.00 0.00 1.89
163 164 3.146618 CGTAGCTTCCGAGTTGTGTAT 57.853 47.619 0.00 0.00 0.00 2.29
164 165 2.624316 CGTAGCTTCCGAGTTGTGTA 57.376 50.000 0.00 0.00 0.00 2.90
165 166 3.491581 CGTAGCTTCCGAGTTGTGT 57.508 52.632 0.00 0.00 0.00 3.72
185 186 2.006888 TGCGGCGATTCCTTCTTAAAG 58.993 47.619 12.98 0.00 0.00 1.85
186 187 1.735571 GTGCGGCGATTCCTTCTTAAA 59.264 47.619 12.98 0.00 0.00 1.52
187 188 1.365699 GTGCGGCGATTCCTTCTTAA 58.634 50.000 12.98 0.00 0.00 1.85
188 189 0.804544 CGTGCGGCGATTCCTTCTTA 60.805 55.000 12.98 0.00 44.77 2.10
189 190 2.100631 CGTGCGGCGATTCCTTCTT 61.101 57.895 12.98 0.00 44.77 2.52
190 191 2.509336 CGTGCGGCGATTCCTTCT 60.509 61.111 12.98 0.00 44.77 2.85
191 192 2.813908 ACGTGCGGCGATTCCTTC 60.814 61.111 12.98 0.00 44.77 3.46
192 193 3.118454 CACGTGCGGCGATTCCTT 61.118 61.111 12.98 0.00 44.77 3.36
203 204 2.022346 CATCATCAGCGCACGTGC 59.978 61.111 30.42 30.42 37.78 5.34
204 205 2.705220 CCATCATCAGCGCACGTG 59.295 61.111 12.28 12.28 0.00 4.49
205 206 3.197790 GCCATCATCAGCGCACGT 61.198 61.111 11.47 0.00 0.00 4.49
206 207 4.289379 CGCCATCATCAGCGCACG 62.289 66.667 11.47 0.00 46.50 5.34
211 212 1.144716 TGGACTCGCCATCATCAGC 59.855 57.895 0.00 0.00 43.33 4.26
220 221 2.358737 CCTTGTGGTGGACTCGCC 60.359 66.667 0.00 0.00 43.64 5.54
221 222 2.426023 ACCTTGTGGTGGACTCGC 59.574 61.111 0.00 0.00 46.51 5.03
222 223 1.474320 TTCAACCTTGTGGTGGACTCG 60.474 52.381 0.00 0.00 45.51 4.18
223 224 1.947456 GTTCAACCTTGTGGTGGACTC 59.053 52.381 0.00 0.00 45.51 3.36
224 225 1.564348 AGTTCAACCTTGTGGTGGACT 59.436 47.619 0.00 0.00 45.51 3.85
225 226 2.052782 AGTTCAACCTTGTGGTGGAC 57.947 50.000 0.00 0.00 45.51 4.02
230 231 4.275936 AGAATTCGAAGTTCAACCTTGTGG 59.724 41.667 17.03 0.00 39.83 4.17
231 232 5.007626 TGAGAATTCGAAGTTCAACCTTGTG 59.992 40.000 17.03 0.00 0.00 3.33
232 233 5.123227 TGAGAATTCGAAGTTCAACCTTGT 58.877 37.500 17.03 0.00 0.00 3.16
233 234 5.673337 TGAGAATTCGAAGTTCAACCTTG 57.327 39.130 17.03 0.00 0.00 3.61
234 235 5.412904 GGATGAGAATTCGAAGTTCAACCTT 59.587 40.000 19.53 3.82 30.64 3.50
235 236 4.938226 GGATGAGAATTCGAAGTTCAACCT 59.062 41.667 19.53 6.64 30.64 3.50
236 237 4.695455 TGGATGAGAATTCGAAGTTCAACC 59.305 41.667 19.77 19.77 33.01 3.77
237 238 5.179368 TGTGGATGAGAATTCGAAGTTCAAC 59.821 40.000 17.03 12.72 0.00 3.18
238 239 5.304778 TGTGGATGAGAATTCGAAGTTCAA 58.695 37.500 17.03 9.14 0.00 2.69
239 240 4.893608 TGTGGATGAGAATTCGAAGTTCA 58.106 39.130 17.03 14.19 0.00 3.18
240 241 5.862924 TTGTGGATGAGAATTCGAAGTTC 57.137 39.130 3.35 7.95 0.00 3.01
241 242 5.335191 GCTTTGTGGATGAGAATTCGAAGTT 60.335 40.000 3.35 0.00 0.00 2.66
242 243 4.154918 GCTTTGTGGATGAGAATTCGAAGT 59.845 41.667 3.35 0.00 0.00 3.01
243 244 4.437930 GGCTTTGTGGATGAGAATTCGAAG 60.438 45.833 3.35 0.00 0.00 3.79
244 245 3.440173 GGCTTTGTGGATGAGAATTCGAA 59.560 43.478 0.00 0.00 0.00 3.71
245 246 3.009723 GGCTTTGTGGATGAGAATTCGA 58.990 45.455 0.00 0.00 0.00 3.71
246 247 2.749076 TGGCTTTGTGGATGAGAATTCG 59.251 45.455 0.00 0.00 0.00 3.34
247 248 4.219288 ACTTGGCTTTGTGGATGAGAATTC 59.781 41.667 0.00 0.00 0.00 2.17
248 249 4.154942 ACTTGGCTTTGTGGATGAGAATT 58.845 39.130 0.00 0.00 0.00 2.17
249 250 3.771216 ACTTGGCTTTGTGGATGAGAAT 58.229 40.909 0.00 0.00 0.00 2.40
250 251 3.228188 ACTTGGCTTTGTGGATGAGAA 57.772 42.857 0.00 0.00 0.00 2.87
251 252 2.957402 ACTTGGCTTTGTGGATGAGA 57.043 45.000 0.00 0.00 0.00 3.27
252 253 3.318839 TGAAACTTGGCTTTGTGGATGAG 59.681 43.478 0.00 0.00 0.00 2.90
253 254 3.295093 TGAAACTTGGCTTTGTGGATGA 58.705 40.909 0.00 0.00 0.00 2.92
254 255 3.731652 TGAAACTTGGCTTTGTGGATG 57.268 42.857 0.00 0.00 0.00 3.51
255 256 4.262592 GGATTGAAACTTGGCTTTGTGGAT 60.263 41.667 0.00 0.00 0.00 3.41
256 257 3.069443 GGATTGAAACTTGGCTTTGTGGA 59.931 43.478 0.00 0.00 0.00 4.02
257 258 3.181467 TGGATTGAAACTTGGCTTTGTGG 60.181 43.478 0.00 0.00 0.00 4.17
258 259 3.803778 GTGGATTGAAACTTGGCTTTGTG 59.196 43.478 0.00 0.00 0.00 3.33
259 260 3.181466 GGTGGATTGAAACTTGGCTTTGT 60.181 43.478 0.00 0.00 0.00 2.83
260 261 3.181467 TGGTGGATTGAAACTTGGCTTTG 60.181 43.478 0.00 0.00 0.00 2.77
261 262 3.037549 TGGTGGATTGAAACTTGGCTTT 58.962 40.909 0.00 0.00 0.00 3.51
262 263 2.365293 GTGGTGGATTGAAACTTGGCTT 59.635 45.455 0.00 0.00 0.00 4.35
263 264 1.963515 GTGGTGGATTGAAACTTGGCT 59.036 47.619 0.00 0.00 0.00 4.75
264 265 1.000843 GGTGGTGGATTGAAACTTGGC 59.999 52.381 0.00 0.00 0.00 4.52
265 266 2.597455 AGGTGGTGGATTGAAACTTGG 58.403 47.619 0.00 0.00 0.00 3.61
266 267 3.636300 TGAAGGTGGTGGATTGAAACTTG 59.364 43.478 0.00 0.00 0.00 3.16
267 268 3.891366 CTGAAGGTGGTGGATTGAAACTT 59.109 43.478 0.00 0.00 0.00 2.66
268 269 3.490348 CTGAAGGTGGTGGATTGAAACT 58.510 45.455 0.00 0.00 0.00 2.66
269 270 2.029918 GCTGAAGGTGGTGGATTGAAAC 60.030 50.000 0.00 0.00 0.00 2.78
270 271 2.238521 GCTGAAGGTGGTGGATTGAAA 58.761 47.619 0.00 0.00 0.00 2.69
271 272 1.144708 TGCTGAAGGTGGTGGATTGAA 59.855 47.619 0.00 0.00 0.00 2.69
272 273 0.770499 TGCTGAAGGTGGTGGATTGA 59.230 50.000 0.00 0.00 0.00 2.57
273 274 1.542915 CTTGCTGAAGGTGGTGGATTG 59.457 52.381 0.00 0.00 0.00 2.67
274 275 1.548582 CCTTGCTGAAGGTGGTGGATT 60.549 52.381 0.00 0.00 43.63 3.01
275 276 0.038744 CCTTGCTGAAGGTGGTGGAT 59.961 55.000 0.00 0.00 43.63 3.41
276 277 1.455849 CCTTGCTGAAGGTGGTGGA 59.544 57.895 0.00 0.00 43.63 4.02
277 278 4.085876 CCTTGCTGAAGGTGGTGG 57.914 61.111 0.00 0.00 43.63 4.61
284 285 0.861837 GTGTCGTGTCCTTGCTGAAG 59.138 55.000 0.00 0.00 0.00 3.02
285 286 0.176910 TGTGTCGTGTCCTTGCTGAA 59.823 50.000 0.00 0.00 0.00 3.02
286 287 0.249447 CTGTGTCGTGTCCTTGCTGA 60.249 55.000 0.00 0.00 0.00 4.26
287 288 1.224069 CCTGTGTCGTGTCCTTGCTG 61.224 60.000 0.00 0.00 0.00 4.41
288 289 1.069765 CCTGTGTCGTGTCCTTGCT 59.930 57.895 0.00 0.00 0.00 3.91
289 290 2.607892 GCCTGTGTCGTGTCCTTGC 61.608 63.158 0.00 0.00 0.00 4.01
290 291 1.227527 TGCCTGTGTCGTGTCCTTG 60.228 57.895 0.00 0.00 0.00 3.61
291 292 1.227556 GTGCCTGTGTCGTGTCCTT 60.228 57.895 0.00 0.00 0.00 3.36
292 293 2.421739 GTGCCTGTGTCGTGTCCT 59.578 61.111 0.00 0.00 0.00 3.85
293 294 3.036084 CGTGCCTGTGTCGTGTCC 61.036 66.667 0.00 0.00 0.00 4.02
294 295 3.702555 GCGTGCCTGTGTCGTGTC 61.703 66.667 0.00 0.00 0.00 3.67
299 300 4.961511 TCACCGCGTGCCTGTGTC 62.962 66.667 4.92 0.00 32.98 3.67
302 303 2.835701 CTATGTCACCGCGTGCCTGT 62.836 60.000 4.92 0.00 32.98 4.00
303 304 2.125713 TATGTCACCGCGTGCCTG 60.126 61.111 4.92 0.00 32.98 4.85
304 305 2.184322 CTATGTCACCGCGTGCCT 59.816 61.111 4.92 0.00 32.98 4.75
305 306 3.564027 GCTATGTCACCGCGTGCC 61.564 66.667 4.92 0.00 32.98 5.01
306 307 3.564027 GGCTATGTCACCGCGTGC 61.564 66.667 4.92 1.29 32.98 5.34
307 308 2.167219 CAGGCTATGTCACCGCGTG 61.167 63.158 4.92 3.64 33.97 5.34
308 309 1.676678 ATCAGGCTATGTCACCGCGT 61.677 55.000 4.92 0.00 0.00 6.01
309 310 0.941463 GATCAGGCTATGTCACCGCG 60.941 60.000 0.00 0.00 0.00 6.46
310 311 0.104855 TGATCAGGCTATGTCACCGC 59.895 55.000 0.00 0.00 0.00 5.68
311 312 2.602257 TTGATCAGGCTATGTCACCG 57.398 50.000 0.00 0.00 0.00 4.94
312 313 4.142609 TCTTTGATCAGGCTATGTCACC 57.857 45.455 0.00 0.00 0.00 4.02
313 314 5.609423 AGATCTTTGATCAGGCTATGTCAC 58.391 41.667 9.78 0.00 0.00 3.67
314 315 5.883685 AGATCTTTGATCAGGCTATGTCA 57.116 39.130 9.78 0.00 0.00 3.58
315 316 6.018098 CACAAGATCTTTGATCAGGCTATGTC 60.018 42.308 4.86 0.00 0.00 3.06
316 317 5.821470 CACAAGATCTTTGATCAGGCTATGT 59.179 40.000 4.86 0.00 0.00 2.29
317 318 5.821470 ACACAAGATCTTTGATCAGGCTATG 59.179 40.000 18.50 3.46 0.00 2.23
318 319 5.999044 ACACAAGATCTTTGATCAGGCTAT 58.001 37.500 18.50 0.00 0.00 2.97
319 320 5.426689 ACACAAGATCTTTGATCAGGCTA 57.573 39.130 18.50 0.00 0.00 3.93
320 321 4.298103 ACACAAGATCTTTGATCAGGCT 57.702 40.909 18.50 0.00 0.00 4.58
321 322 5.382618 AAACACAAGATCTTTGATCAGGC 57.617 39.130 18.50 0.00 0.00 4.85
322 323 5.474532 TGGAAACACAAGATCTTTGATCAGG 59.525 40.000 18.50 5.27 33.40 3.86
323 324 6.564709 TGGAAACACAAGATCTTTGATCAG 57.435 37.500 18.50 5.86 33.40 2.90
339 340 0.888736 CATGCACTCCGGTGGAAACA 60.889 55.000 8.63 0.78 46.22 2.83
340 341 0.605319 TCATGCACTCCGGTGGAAAC 60.605 55.000 8.63 0.00 46.22 2.78
341 342 0.109532 TTCATGCACTCCGGTGGAAA 59.890 50.000 8.63 0.00 46.22 3.13
342 343 0.605319 GTTCATGCACTCCGGTGGAA 60.605 55.000 8.63 0.00 46.22 3.53
344 345 1.003355 AGTTCATGCACTCCGGTGG 60.003 57.895 8.63 2.00 43.18 4.61
345 346 1.354337 CGAGTTCATGCACTCCGGTG 61.354 60.000 18.14 0.00 45.53 4.94
346 347 1.079819 CGAGTTCATGCACTCCGGT 60.080 57.895 18.14 0.00 40.26 5.28
347 348 1.078759 GACGAGTTCATGCACTCCGG 61.079 60.000 18.14 8.95 40.26 5.14
348 349 0.388520 TGACGAGTTCATGCACTCCG 60.389 55.000 18.14 15.14 40.26 4.63
349 350 2.015736 ATGACGAGTTCATGCACTCC 57.984 50.000 18.14 7.25 43.87 3.85
350 351 2.995939 TCAATGACGAGTTCATGCACTC 59.004 45.455 14.69 14.69 44.86 3.51
351 352 3.044235 TCAATGACGAGTTCATGCACT 57.956 42.857 0.00 0.00 44.86 4.40
352 353 3.740590 CTTCAATGACGAGTTCATGCAC 58.259 45.455 0.00 0.00 44.86 4.57
353 354 2.160219 GCTTCAATGACGAGTTCATGCA 59.840 45.455 0.00 0.00 44.86 3.96
354 355 2.778659 GCTTCAATGACGAGTTCATGC 58.221 47.619 0.00 0.00 44.86 4.06
355 356 2.222886 CCGCTTCAATGACGAGTTCATG 60.223 50.000 0.00 0.00 44.86 3.07
357 358 1.270094 ACCGCTTCAATGACGAGTTCA 60.270 47.619 0.00 0.00 39.11 3.18
358 359 1.390463 GACCGCTTCAATGACGAGTTC 59.610 52.381 0.00 0.00 0.00 3.01
359 360 1.000955 AGACCGCTTCAATGACGAGTT 59.999 47.619 0.00 0.00 0.00 3.01
360 361 0.603569 AGACCGCTTCAATGACGAGT 59.396 50.000 0.00 0.00 0.00 4.18
361 362 0.994995 CAGACCGCTTCAATGACGAG 59.005 55.000 0.00 0.00 0.00 4.18
362 363 0.317160 ACAGACCGCTTCAATGACGA 59.683 50.000 0.00 0.00 0.00 4.20
363 364 1.654105 GTACAGACCGCTTCAATGACG 59.346 52.381 0.00 0.00 0.00 4.35
364 365 2.000447 GGTACAGACCGCTTCAATGAC 59.000 52.381 0.00 0.00 35.52 3.06
365 366 2.380084 GGTACAGACCGCTTCAATGA 57.620 50.000 0.00 0.00 35.52 2.57
380 381 1.612463 ACGGATAAGAGCGGATGGTAC 59.388 52.381 0.00 0.00 0.00 3.34
381 382 1.884579 GACGGATAAGAGCGGATGGTA 59.115 52.381 0.00 0.00 0.00 3.25
382 383 0.674534 GACGGATAAGAGCGGATGGT 59.325 55.000 0.00 0.00 0.00 3.55
383 384 0.962489 AGACGGATAAGAGCGGATGG 59.038 55.000 0.00 0.00 0.00 3.51
384 385 2.095161 GGTAGACGGATAAGAGCGGATG 60.095 54.545 0.00 0.00 0.00 3.51
385 386 2.161030 GGTAGACGGATAAGAGCGGAT 58.839 52.381 0.00 0.00 0.00 4.18
386 387 1.134007 TGGTAGACGGATAAGAGCGGA 60.134 52.381 0.00 0.00 0.00 5.54
387 388 1.315690 TGGTAGACGGATAAGAGCGG 58.684 55.000 0.00 0.00 0.00 5.52
388 389 2.098607 TGTTGGTAGACGGATAAGAGCG 59.901 50.000 0.00 0.00 0.00 5.03
389 390 3.445857 GTGTTGGTAGACGGATAAGAGC 58.554 50.000 0.00 0.00 0.00 4.09
390 391 3.700038 AGGTGTTGGTAGACGGATAAGAG 59.300 47.826 0.00 0.00 0.00 2.85
391 392 3.698040 GAGGTGTTGGTAGACGGATAAGA 59.302 47.826 0.00 0.00 0.00 2.10
392 393 3.488721 CGAGGTGTTGGTAGACGGATAAG 60.489 52.174 0.00 0.00 0.00 1.73
393 394 2.424601 CGAGGTGTTGGTAGACGGATAA 59.575 50.000 0.00 0.00 0.00 1.75
394 395 2.019249 CGAGGTGTTGGTAGACGGATA 58.981 52.381 0.00 0.00 0.00 2.59
395 396 0.815734 CGAGGTGTTGGTAGACGGAT 59.184 55.000 0.00 0.00 0.00 4.18
396 397 0.250858 TCGAGGTGTTGGTAGACGGA 60.251 55.000 0.00 0.00 0.00 4.69
397 398 0.815734 ATCGAGGTGTTGGTAGACGG 59.184 55.000 0.00 0.00 0.00 4.79
398 399 2.541178 GCTATCGAGGTGTTGGTAGACG 60.541 54.545 0.00 0.00 0.00 4.18
399 400 2.223758 GGCTATCGAGGTGTTGGTAGAC 60.224 54.545 0.00 0.00 0.00 2.59
400 401 2.029623 GGCTATCGAGGTGTTGGTAGA 58.970 52.381 0.00 0.00 0.00 2.59
401 402 1.269102 CGGCTATCGAGGTGTTGGTAG 60.269 57.143 0.00 0.00 42.43 3.18
402 403 0.742505 CGGCTATCGAGGTGTTGGTA 59.257 55.000 0.00 0.00 42.43 3.25
403 404 1.515954 CGGCTATCGAGGTGTTGGT 59.484 57.895 0.00 0.00 42.43 3.67
404 405 1.227263 CCGGCTATCGAGGTGTTGG 60.227 63.158 0.00 0.00 42.43 3.77
405 406 0.389391 ATCCGGCTATCGAGGTGTTG 59.611 55.000 0.00 0.00 42.43 3.33
406 407 1.612463 GTATCCGGCTATCGAGGTGTT 59.388 52.381 0.00 0.00 42.43 3.32
407 408 1.245732 GTATCCGGCTATCGAGGTGT 58.754 55.000 0.00 0.00 42.43 4.16
408 409 0.526662 GGTATCCGGCTATCGAGGTG 59.473 60.000 0.00 0.00 42.43 4.00
409 410 0.404812 AGGTATCCGGCTATCGAGGT 59.595 55.000 0.00 0.00 42.43 3.85
410 411 1.096416 GAGGTATCCGGCTATCGAGG 58.904 60.000 0.00 0.00 42.43 4.63
411 412 1.740585 CAGAGGTATCCGGCTATCGAG 59.259 57.143 0.00 0.00 42.43 4.04
412 413 1.350019 TCAGAGGTATCCGGCTATCGA 59.650 52.381 0.00 0.00 42.43 3.59
413 414 1.822506 TCAGAGGTATCCGGCTATCG 58.177 55.000 0.00 0.00 38.88 2.92
414 415 4.602340 TTTTCAGAGGTATCCGGCTATC 57.398 45.455 0.00 0.00 0.00 2.08
434 435 7.863877 GGGACGTATTTGTCTTATGTTGTTTTT 59.136 33.333 0.00 0.00 38.91 1.94
435 436 7.013464 TGGGACGTATTTGTCTTATGTTGTTTT 59.987 33.333 0.00 0.00 38.91 2.43
436 437 6.487331 TGGGACGTATTTGTCTTATGTTGTTT 59.513 34.615 0.00 0.00 38.91 2.83
437 438 5.998981 TGGGACGTATTTGTCTTATGTTGTT 59.001 36.000 0.00 0.00 38.91 2.83
438 439 5.553123 TGGGACGTATTTGTCTTATGTTGT 58.447 37.500 0.00 0.00 38.91 3.32
439 440 6.677781 ATGGGACGTATTTGTCTTATGTTG 57.322 37.500 0.00 0.00 38.91 3.33
440 441 6.764560 GGTATGGGACGTATTTGTCTTATGTT 59.235 38.462 0.00 0.00 38.91 2.71
441 442 6.285990 GGTATGGGACGTATTTGTCTTATGT 58.714 40.000 0.00 0.00 38.91 2.29
442 443 5.404366 CGGTATGGGACGTATTTGTCTTATG 59.596 44.000 0.00 0.00 38.91 1.90
443 444 5.535333 CGGTATGGGACGTATTTGTCTTAT 58.465 41.667 0.00 0.00 38.91 1.73
444 445 4.737352 GCGGTATGGGACGTATTTGTCTTA 60.737 45.833 0.00 0.00 38.91 2.10
445 446 3.788937 CGGTATGGGACGTATTTGTCTT 58.211 45.455 0.00 0.00 38.91 3.01
446 447 2.482490 GCGGTATGGGACGTATTTGTCT 60.482 50.000 0.00 0.00 38.91 3.41
447 448 1.862827 GCGGTATGGGACGTATTTGTC 59.137 52.381 0.00 0.00 38.17 3.18
448 449 1.483415 AGCGGTATGGGACGTATTTGT 59.517 47.619 0.00 0.00 0.00 2.83
449 450 2.234300 AGCGGTATGGGACGTATTTG 57.766 50.000 0.00 0.00 0.00 2.32
450 451 2.557317 CAAGCGGTATGGGACGTATTT 58.443 47.619 0.00 0.00 0.00 1.40
451 452 1.808891 GCAAGCGGTATGGGACGTATT 60.809 52.381 0.00 0.00 0.00 1.89
452 453 0.249741 GCAAGCGGTATGGGACGTAT 60.250 55.000 0.00 0.00 0.00 3.06
453 454 1.142314 GCAAGCGGTATGGGACGTA 59.858 57.895 0.00 0.00 0.00 3.57
454 455 2.125269 GCAAGCGGTATGGGACGT 60.125 61.111 0.00 0.00 0.00 4.34
455 456 2.895372 GGCAAGCGGTATGGGACG 60.895 66.667 0.00 0.00 0.00 4.79
456 457 1.523938 GAGGCAAGCGGTATGGGAC 60.524 63.158 0.00 0.00 0.00 4.46
457 458 2.742116 GGAGGCAAGCGGTATGGGA 61.742 63.158 0.00 0.00 0.00 4.37
458 459 2.203209 GGAGGCAAGCGGTATGGG 60.203 66.667 0.00 0.00 0.00 4.00
459 460 2.203209 GGGAGGCAAGCGGTATGG 60.203 66.667 0.00 0.00 0.00 2.74
460 461 2.588877 CGGGAGGCAAGCGGTATG 60.589 66.667 0.00 0.00 0.00 2.39
461 462 4.547367 GCGGGAGGCAAGCGGTAT 62.547 66.667 0.00 0.00 42.87 2.73
470 471 1.602888 TCGGATAGTAGCGGGAGGC 60.603 63.158 0.00 0.00 44.05 4.70
471 472 0.536687 TGTCGGATAGTAGCGGGAGG 60.537 60.000 0.00 0.00 0.00 4.30
472 473 0.875728 CTGTCGGATAGTAGCGGGAG 59.124 60.000 0.00 0.00 0.00 4.30
473 474 0.471191 TCTGTCGGATAGTAGCGGGA 59.529 55.000 1.55 0.00 0.00 5.14
474 475 0.592148 GTCTGTCGGATAGTAGCGGG 59.408 60.000 1.55 0.00 0.00 6.13
475 476 1.002684 GTGTCTGTCGGATAGTAGCGG 60.003 57.143 1.55 0.00 0.00 5.52
476 477 1.669265 TGTGTCTGTCGGATAGTAGCG 59.331 52.381 1.55 0.00 0.00 4.26
477 478 2.943690 TCTGTGTCTGTCGGATAGTAGC 59.056 50.000 1.55 0.00 0.00 3.58
478 479 4.193090 AGTCTGTGTCTGTCGGATAGTAG 58.807 47.826 1.55 0.00 0.00 2.57
479 480 4.217836 AGTCTGTGTCTGTCGGATAGTA 57.782 45.455 1.55 0.00 0.00 1.82
480 481 3.074675 AGTCTGTGTCTGTCGGATAGT 57.925 47.619 1.55 0.00 0.00 2.12
481 482 5.124138 AGTTTAGTCTGTGTCTGTCGGATAG 59.876 44.000 0.00 0.00 0.00 2.08
482 483 5.008331 AGTTTAGTCTGTGTCTGTCGGATA 58.992 41.667 0.00 0.00 0.00 2.59
483 484 3.827302 AGTTTAGTCTGTGTCTGTCGGAT 59.173 43.478 0.00 0.00 0.00 4.18
484 485 3.220110 AGTTTAGTCTGTGTCTGTCGGA 58.780 45.455 0.00 0.00 0.00 4.55
485 486 3.566523 GAGTTTAGTCTGTGTCTGTCGG 58.433 50.000 0.00 0.00 0.00 4.79
486 487 3.059120 TCGAGTTTAGTCTGTGTCTGTCG 60.059 47.826 0.00 0.00 0.00 4.35
487 488 4.023878 ACTCGAGTTTAGTCTGTGTCTGTC 60.024 45.833 13.58 0.00 0.00 3.51
488 489 3.884091 ACTCGAGTTTAGTCTGTGTCTGT 59.116 43.478 13.58 0.00 0.00 3.41
489 490 4.491234 ACTCGAGTTTAGTCTGTGTCTG 57.509 45.455 13.58 0.00 0.00 3.51
490 491 6.630444 TTAACTCGAGTTTAGTCTGTGTCT 57.370 37.500 33.82 9.35 39.31 3.41
491 492 6.308282 CCATTAACTCGAGTTTAGTCTGTGTC 59.692 42.308 33.82 0.00 39.31 3.67
492 493 6.157211 CCATTAACTCGAGTTTAGTCTGTGT 58.843 40.000 33.82 10.09 39.31 3.72
493 494 5.577164 CCCATTAACTCGAGTTTAGTCTGTG 59.423 44.000 33.82 19.11 39.31 3.66
494 495 5.245526 ACCCATTAACTCGAGTTTAGTCTGT 59.754 40.000 33.82 20.63 39.31 3.41
495 496 5.721232 ACCCATTAACTCGAGTTTAGTCTG 58.279 41.667 33.82 19.77 39.31 3.51
496 497 5.479375 TGACCCATTAACTCGAGTTTAGTCT 59.521 40.000 33.82 13.12 39.31 3.24
497 498 5.717119 TGACCCATTAACTCGAGTTTAGTC 58.283 41.667 33.82 27.67 39.31 2.59
498 499 5.337330 CCTGACCCATTAACTCGAGTTTAGT 60.337 44.000 33.82 22.50 39.31 2.24
499 500 5.109903 CCTGACCCATTAACTCGAGTTTAG 58.890 45.833 33.82 22.44 39.31 1.85
500 501 4.529377 ACCTGACCCATTAACTCGAGTTTA 59.471 41.667 33.82 26.01 39.31 2.01
501 502 3.326880 ACCTGACCCATTAACTCGAGTTT 59.673 43.478 33.82 16.45 39.31 2.66
502 503 2.904434 ACCTGACCCATTAACTCGAGTT 59.096 45.455 31.70 31.70 41.73 3.01
503 504 2.496470 GACCTGACCCATTAACTCGAGT 59.504 50.000 13.58 13.58 0.00 4.18
504 505 2.761208 AGACCTGACCCATTAACTCGAG 59.239 50.000 11.84 11.84 0.00 4.04
505 506 2.816411 AGACCTGACCCATTAACTCGA 58.184 47.619 0.00 0.00 0.00 4.04
506 507 4.730949 TTAGACCTGACCCATTAACTCG 57.269 45.455 0.00 0.00 0.00 4.18
507 508 7.110155 TGAATTTAGACCTGACCCATTAACTC 58.890 38.462 0.00 0.00 0.00 3.01
508 509 7.027874 TGAATTTAGACCTGACCCATTAACT 57.972 36.000 0.00 0.00 0.00 2.24
607 608 2.353579 CGGGTCCATTTTCATTACGGAC 59.646 50.000 0.00 0.00 44.45 4.79
674 675 8.689061 TCATATGACTGTTAGTATAACAACGGT 58.311 33.333 0.00 10.50 44.81 4.83
794 840 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
795 841 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
796 842 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
797 843 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
798 844 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
799 845 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
800 846 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
801 847 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
802 848 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
803 849 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
804 850 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
805 851 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
806 852 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
807 853 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
848 894 1.545651 GGCCCTCCTTTTATAGCGCAT 60.546 52.381 11.47 3.63 0.00 4.73
849 895 0.179029 GGCCCTCCTTTTATAGCGCA 60.179 55.000 11.47 0.00 0.00 6.09
911 965 6.223852 TGAGAAAGAAAGCTAGTGTTACTGG 58.776 40.000 0.00 0.00 0.00 4.00
912 966 7.148641 TCTGAGAAAGAAAGCTAGTGTTACTG 58.851 38.462 0.00 0.00 29.54 2.74
997 1076 1.615883 CCTCGTCACCCTCTCCATATG 59.384 57.143 0.00 0.00 0.00 1.78
1595 1680 7.594758 ACGAGTTCATTATTTGTGAATGGTTTG 59.405 33.333 0.00 0.00 37.84 2.93
1640 1725 0.462759 GGTTCAGAGAGATTGGCCGG 60.463 60.000 0.00 0.00 0.00 6.13
1701 1787 6.149973 CAGTAATGAATTTGAAGACTCTGCCA 59.850 38.462 0.00 0.00 0.00 4.92
1839 1928 2.932614 TGGCAAAATTTGTGTTTGTCCG 59.067 40.909 7.60 0.00 39.34 4.79
1865 1954 3.494398 CCGGATTCCAATAGTGTGGTAGG 60.494 52.174 0.00 0.00 39.88 3.18
1873 1962 4.887655 GGTGAAATTCCGGATTCCAATAGT 59.112 41.667 4.15 0.00 0.00 2.12
1877 1966 2.088423 CGGTGAAATTCCGGATTCCAA 58.912 47.619 4.15 0.00 43.68 3.53
1888 1977 5.391950 CCGATGAATTGAACTCGGTGAAATT 60.392 40.000 0.00 0.00 44.30 1.82
1911 2000 2.396590 TTATCAACAACTCGCCTCCC 57.603 50.000 0.00 0.00 0.00 4.30
1916 2005 4.494855 GGAGCTCAATTATCAACAACTCGC 60.495 45.833 17.19 0.00 0.00 5.03
1940 2029 3.287121 CTGAGTTGCGCGTCACTGC 62.287 63.158 15.81 8.89 0.00 4.40
1954 2043 1.266175 CAAACACTGAAGCCTGCTGAG 59.734 52.381 0.00 0.00 0.00 3.35
1962 2051 1.068954 GCACTAGGCAAACACTGAAGC 60.069 52.381 0.00 0.00 43.97 3.86
1968 2057 0.320421 TCCTCGCACTAGGCAAACAC 60.320 55.000 0.00 0.00 45.17 3.32
1973 2062 1.519408 GTTTTTCCTCGCACTAGGCA 58.481 50.000 0.00 0.00 45.17 4.75
1994 2084 2.034685 AGTTTCTTTCTTTTGCCGAGCC 59.965 45.455 0.00 0.00 0.00 4.70
1996 2086 4.531332 CTGAGTTTCTTTCTTTTGCCGAG 58.469 43.478 0.00 0.00 0.00 4.63
1997 2087 3.243068 GCTGAGTTTCTTTCTTTTGCCGA 60.243 43.478 0.00 0.00 0.00 5.54
1999 2089 4.045636 TGCTGAGTTTCTTTCTTTTGCC 57.954 40.909 0.00 0.00 0.00 4.52
2000 2090 4.501921 CACTGCTGAGTTTCTTTCTTTTGC 59.498 41.667 0.00 0.00 0.00 3.68
2001 2091 5.644644 ACACTGCTGAGTTTCTTTCTTTTG 58.355 37.500 0.00 0.00 0.00 2.44
2002 2092 5.447818 CGACACTGCTGAGTTTCTTTCTTTT 60.448 40.000 0.00 0.00 28.12 2.27
2003 2093 4.034510 CGACACTGCTGAGTTTCTTTCTTT 59.965 41.667 0.00 0.00 28.12 2.52
2004 2094 3.557595 CGACACTGCTGAGTTTCTTTCTT 59.442 43.478 0.00 0.00 28.12 2.52
2005 2095 3.126831 CGACACTGCTGAGTTTCTTTCT 58.873 45.455 0.00 0.00 28.12 2.52
2042 2132 6.108687 CACTGTCTGAGTTTATATCTGGCAA 58.891 40.000 0.00 0.00 31.15 4.52
2087 2177 2.108168 GTCACATCTGGCCTGGTAGTA 58.892 52.381 10.07 0.00 0.00 1.82
2112 2202 3.187842 GTGGAAACCCGACAAACATAGAC 59.812 47.826 0.00 0.00 0.00 2.59
2117 2207 2.944349 GTTAGTGGAAACCCGACAAACA 59.056 45.455 0.00 0.00 0.00 2.83
2124 2214 3.610637 TTCCGTTAGTGGAAACCCG 57.389 52.632 0.00 0.00 44.86 5.28
2131 2221 2.163818 TGCTGAGTTTCCGTTAGTGG 57.836 50.000 0.00 0.00 0.00 4.00
2158 2248 9.893305 ACGTTGAAATTCTGTAATAAAAAGGAG 57.107 29.630 0.00 0.00 0.00 3.69
2166 2259 7.876068 AGAGGTGAACGTTGAAATTCTGTAATA 59.124 33.333 5.00 0.00 0.00 0.98
2172 2265 6.231211 ACATAGAGGTGAACGTTGAAATTCT 58.769 36.000 5.00 3.87 0.00 2.40
2173 2266 6.481954 ACATAGAGGTGAACGTTGAAATTC 57.518 37.500 5.00 0.00 0.00 2.17
2202 2295 0.665369 TCGGGTTTTTCTCGACGAGC 60.665 55.000 20.11 5.47 44.69 5.03
2203 2296 1.068748 TCTCGGGTTTTTCTCGACGAG 60.069 52.381 18.91 18.91 44.69 4.18
2208 2301 3.129638 AGATCTCTCTCGGGTTTTTCTCG 59.870 47.826 0.00 0.00 42.07 4.04
2217 2310 1.133945 TCCTGTCAGATCTCTCTCGGG 60.134 57.143 0.00 0.00 0.00 5.14
2219 2312 2.221169 CCTCCTGTCAGATCTCTCTCG 58.779 57.143 0.00 0.00 0.00 4.04
2222 2315 1.039856 GGCCTCCTGTCAGATCTCTC 58.960 60.000 0.00 0.00 0.00 3.20
2224 2317 1.743321 CGGGCCTCCTGTCAGATCTC 61.743 65.000 0.84 0.00 0.00 2.75
2249 2343 0.454285 CAAATAGCCGTTGCCACGTG 60.454 55.000 9.08 9.08 45.62 4.49
2252 2346 0.179200 CGTCAAATAGCCGTTGCCAC 60.179 55.000 0.00 0.00 38.69 5.01
2259 2353 0.391927 TCCCAACCGTCAAATAGCCG 60.392 55.000 0.00 0.00 0.00 5.52
2288 2386 0.181587 TTGCCGAGTTTTGGGACTCA 59.818 50.000 5.94 0.00 44.98 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.