Multiple sequence alignment - TraesCS5D01G106500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G106500 chr5D 100.000 3615 0 0 1 3615 119916594 119912980 0.000000e+00 6676.0
1 TraesCS5D01G106500 chr5D 93.158 760 47 5 2857 3614 8802879 8803635 0.000000e+00 1110.0
2 TraesCS5D01G106500 chr5D 90.265 678 53 7 2857 3525 291899469 291898796 0.000000e+00 874.0
3 TraesCS5D01G106500 chr5A 93.359 2108 83 21 805 2864 130287178 130285080 0.000000e+00 3064.0
4 TraesCS5D01G106500 chr5A 89.221 770 67 10 2857 3615 509215316 509214552 0.000000e+00 948.0
5 TraesCS5D01G106500 chr5A 82.831 431 49 13 78 503 130287586 130287176 2.650000e-96 363.0
6 TraesCS5D01G106500 chr5B 93.251 1941 81 20 942 2864 133419217 133417309 0.000000e+00 2813.0
7 TraesCS5D01G106500 chr5B 98.551 69 1 0 872 940 133420251 133420183 4.900000e-24 122.0
8 TraesCS5D01G106500 chr7D 89.624 771 57 14 2857 3615 30827643 30826884 0.000000e+00 959.0
9 TraesCS5D01G106500 chr1D 89.453 768 56 10 2857 3615 486142825 486142074 0.000000e+00 946.0
10 TraesCS5D01G106500 chr4D 88.258 775 69 10 2853 3615 23218623 23219387 0.000000e+00 907.0
11 TraesCS5D01G106500 chr4D 92.652 313 21 2 500 811 48725744 48725433 1.980000e-122 449.0
12 TraesCS5D01G106500 chr3A 87.581 773 73 13 2857 3615 60285431 60286194 0.000000e+00 874.0
13 TraesCS5D01G106500 chr3A 80.386 311 53 6 2857 3165 682032894 682033198 2.810000e-56 230.0
14 TraesCS5D01G106500 chr7A 87.451 773 63 13 2854 3615 662094075 662094824 0.000000e+00 859.0
15 TraesCS5D01G106500 chr3D 93.905 443 27 0 2857 3299 375703432 375702990 0.000000e+00 669.0
16 TraesCS5D01G106500 chr3D 80.650 739 99 33 2900 3615 402774228 402773511 1.910000e-147 532.0
17 TraesCS5D01G106500 chr2D 93.220 295 18 2 503 796 78089640 78089933 1.990000e-117 433.0
18 TraesCS5D01G106500 chr2D 79.174 581 107 7 2046 2613 118552462 118553041 1.220000e-104 390.0
19 TraesCS5D01G106500 chr2D 90.301 299 28 1 499 796 574473040 574473338 1.220000e-104 390.0
20 TraesCS5D01G106500 chr2A 90.446 314 26 4 2857 3170 652876057 652875748 9.340000e-111 411.0
21 TraesCS5D01G106500 chr2A 79.078 564 106 8 2046 2597 120462262 120462825 9.470000e-101 377.0
22 TraesCS5D01G106500 chr2A 84.532 278 37 5 2857 3132 335706882 335707155 1.650000e-68 270.0
23 TraesCS5D01G106500 chrUn 91.638 287 22 2 520 805 114235986 114235701 2.620000e-106 396.0
24 TraesCS5D01G106500 chr6A 90.333 300 24 4 501 796 50452629 50452927 4.380000e-104 388.0
25 TraesCS5D01G106500 chr6A 90.000 300 25 4 501 796 50505008 50505306 2.040000e-102 383.0
26 TraesCS5D01G106500 chr6D 89.701 301 28 3 500 798 434015814 434016113 7.320000e-102 381.0
27 TraesCS5D01G106500 chr1A 89.474 304 29 3 504 805 249034894 249034592 7.320000e-102 381.0
28 TraesCS5D01G106500 chr2B 88.997 309 31 3 503 809 780497810 780498117 2.630000e-101 379.0
29 TraesCS5D01G106500 chr4B 89.474 76 8 0 1525 1600 653720290 653720365 2.970000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G106500 chr5D 119912980 119916594 3614 True 6676.0 6676 100.000 1 3615 1 chr5D.!!$R1 3614
1 TraesCS5D01G106500 chr5D 8802879 8803635 756 False 1110.0 1110 93.158 2857 3614 1 chr5D.!!$F1 757
2 TraesCS5D01G106500 chr5D 291898796 291899469 673 True 874.0 874 90.265 2857 3525 1 chr5D.!!$R2 668
3 TraesCS5D01G106500 chr5A 130285080 130287586 2506 True 1713.5 3064 88.095 78 2864 2 chr5A.!!$R2 2786
4 TraesCS5D01G106500 chr5A 509214552 509215316 764 True 948.0 948 89.221 2857 3615 1 chr5A.!!$R1 758
5 TraesCS5D01G106500 chr5B 133417309 133420251 2942 True 1467.5 2813 95.901 872 2864 2 chr5B.!!$R1 1992
6 TraesCS5D01G106500 chr7D 30826884 30827643 759 True 959.0 959 89.624 2857 3615 1 chr7D.!!$R1 758
7 TraesCS5D01G106500 chr1D 486142074 486142825 751 True 946.0 946 89.453 2857 3615 1 chr1D.!!$R1 758
8 TraesCS5D01G106500 chr4D 23218623 23219387 764 False 907.0 907 88.258 2853 3615 1 chr4D.!!$F1 762
9 TraesCS5D01G106500 chr3A 60285431 60286194 763 False 874.0 874 87.581 2857 3615 1 chr3A.!!$F1 758
10 TraesCS5D01G106500 chr7A 662094075 662094824 749 False 859.0 859 87.451 2854 3615 1 chr7A.!!$F1 761
11 TraesCS5D01G106500 chr3D 402773511 402774228 717 True 532.0 532 80.650 2900 3615 1 chr3D.!!$R2 715
12 TraesCS5D01G106500 chr2D 118552462 118553041 579 False 390.0 390 79.174 2046 2613 1 chr2D.!!$F2 567
13 TraesCS5D01G106500 chr2A 120462262 120462825 563 False 377.0 377 79.078 2046 2597 1 chr2A.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 697 0.037697 TCCACGTGCTTAGCATCGTT 60.038 50.0 23.89 12.3 41.37 3.85 F
782 788 0.245539 GCAGTCTTAGCACCGGTACA 59.754 55.0 6.87 0.0 0.00 2.90 F
1403 2401 0.464036 AACTGCCGTCTCTGTGTTCA 59.536 50.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 2605 0.249073 CAGGCGTCGAGGAATGTAGG 60.249 60.0 9.75 0.0 0.0 3.18 R
2509 3525 0.678048 GCTCCTCCCATTCGTTGCTT 60.678 55.0 0.00 0.0 0.0 3.91 R
2618 3634 0.941542 AACACACACACGCATACACC 59.058 50.0 0.00 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.149436 GTGCATGTGTTGTTGACTTGT 57.851 42.857 0.00 0.00 0.00 3.16
21 22 2.853594 GTGCATGTGTTGTTGACTTGTG 59.146 45.455 0.00 0.00 0.00 3.33
22 23 2.491298 TGCATGTGTTGTTGACTTGTGT 59.509 40.909 0.00 0.00 0.00 3.72
23 24 3.691609 TGCATGTGTTGTTGACTTGTGTA 59.308 39.130 0.00 0.00 0.00 2.90
24 25 4.201901 TGCATGTGTTGTTGACTTGTGTAG 60.202 41.667 0.00 0.00 0.00 2.74
25 26 4.282068 CATGTGTTGTTGACTTGTGTAGC 58.718 43.478 0.00 0.00 0.00 3.58
26 27 3.605634 TGTGTTGTTGACTTGTGTAGCT 58.394 40.909 0.00 0.00 0.00 3.32
27 28 4.006989 TGTGTTGTTGACTTGTGTAGCTT 58.993 39.130 0.00 0.00 0.00 3.74
28 29 5.179533 TGTGTTGTTGACTTGTGTAGCTTA 58.820 37.500 0.00 0.00 0.00 3.09
29 30 5.293324 TGTGTTGTTGACTTGTGTAGCTTAG 59.707 40.000 0.00 0.00 0.00 2.18
30 31 4.814234 TGTTGTTGACTTGTGTAGCTTAGG 59.186 41.667 0.00 0.00 0.00 2.69
31 32 4.948341 TGTTGACTTGTGTAGCTTAGGA 57.052 40.909 0.00 0.00 0.00 2.94
32 33 4.883083 TGTTGACTTGTGTAGCTTAGGAG 58.117 43.478 0.00 0.00 0.00 3.69
44 45 3.897141 GCTTAGGAGCTTCTACTGGTT 57.103 47.619 0.00 0.00 45.65 3.67
45 46 3.787785 GCTTAGGAGCTTCTACTGGTTC 58.212 50.000 0.00 0.00 45.65 3.62
46 47 3.735514 GCTTAGGAGCTTCTACTGGTTCG 60.736 52.174 0.00 0.00 45.65 3.95
47 48 2.217510 AGGAGCTTCTACTGGTTCGA 57.782 50.000 0.00 0.00 0.00 3.71
48 49 2.741145 AGGAGCTTCTACTGGTTCGAT 58.259 47.619 0.00 0.00 0.00 3.59
49 50 3.899726 AGGAGCTTCTACTGGTTCGATA 58.100 45.455 0.00 0.00 0.00 2.92
50 51 4.279145 AGGAGCTTCTACTGGTTCGATAA 58.721 43.478 0.00 0.00 0.00 1.75
51 52 4.710375 AGGAGCTTCTACTGGTTCGATAAA 59.290 41.667 0.00 0.00 0.00 1.40
52 53 5.364157 AGGAGCTTCTACTGGTTCGATAAAT 59.636 40.000 0.00 0.00 0.00 1.40
53 54 5.692654 GGAGCTTCTACTGGTTCGATAAATC 59.307 44.000 0.00 0.00 0.00 2.17
54 55 6.461788 GGAGCTTCTACTGGTTCGATAAATCT 60.462 42.308 0.00 0.00 0.00 2.40
55 56 6.879400 AGCTTCTACTGGTTCGATAAATCTT 58.121 36.000 0.00 0.00 0.00 2.40
56 57 8.008513 AGCTTCTACTGGTTCGATAAATCTTA 57.991 34.615 0.00 0.00 0.00 2.10
57 58 8.138712 AGCTTCTACTGGTTCGATAAATCTTAG 58.861 37.037 0.00 0.00 0.00 2.18
58 59 7.921745 GCTTCTACTGGTTCGATAAATCTTAGT 59.078 37.037 0.00 0.00 0.00 2.24
59 60 9.804758 CTTCTACTGGTTCGATAAATCTTAGTT 57.195 33.333 0.00 0.00 0.00 2.24
60 61 9.798994 TTCTACTGGTTCGATAAATCTTAGTTC 57.201 33.333 0.00 0.00 0.00 3.01
61 62 9.186837 TCTACTGGTTCGATAAATCTTAGTTCT 57.813 33.333 0.00 0.00 0.00 3.01
62 63 9.804758 CTACTGGTTCGATAAATCTTAGTTCTT 57.195 33.333 0.00 0.00 0.00 2.52
71 72 9.250624 CGATAAATCTTAGTTCTTAACTGAGGG 57.749 37.037 10.55 0.00 43.23 4.30
75 76 9.862149 AAATCTTAGTTCTTAACTGAGGGAAAA 57.138 29.630 10.55 0.00 43.23 2.29
96 97 1.965935 TTGCTACTTGCTGCTTCACA 58.034 45.000 0.00 0.00 43.37 3.58
100 101 2.096019 GCTACTTGCTGCTTCACACTTC 60.096 50.000 0.00 0.00 38.95 3.01
106 107 1.534595 GCTGCTTCACACTTCCTCTTG 59.465 52.381 0.00 0.00 0.00 3.02
107 108 2.149578 CTGCTTCACACTTCCTCTTGG 58.850 52.381 0.00 0.00 0.00 3.61
109 110 1.884067 GCTTCACACTTCCTCTTGGGG 60.884 57.143 0.00 0.00 35.33 4.96
116 117 2.243221 CACTTCCTCTTGGGGGAATCAT 59.757 50.000 0.00 0.00 41.34 2.45
119 120 4.733988 ACTTCCTCTTGGGGGAATCATAAT 59.266 41.667 0.00 0.00 41.34 1.28
122 123 4.104738 TCCTCTTGGGGGAATCATAATGAC 59.895 45.833 0.00 0.00 35.33 3.06
126 127 3.680169 TGGGGGAATCATAATGACTCCT 58.320 45.455 0.00 0.00 42.11 3.69
141 142 3.675995 TCCTGCGGGAGTAGTAACA 57.324 52.632 11.27 0.00 41.33 2.41
142 143 1.180029 TCCTGCGGGAGTAGTAACAC 58.820 55.000 11.27 0.00 41.33 3.32
190 191 2.175035 TAGCCCTACAACGGTGGTGC 62.175 60.000 4.97 1.05 0.00 5.01
197 198 2.906897 AACGGTGGTGCTGCAAGG 60.907 61.111 2.77 0.00 0.00 3.61
198 199 3.714487 AACGGTGGTGCTGCAAGGT 62.714 57.895 2.77 0.00 0.00 3.50
199 200 3.357079 CGGTGGTGCTGCAAGGTC 61.357 66.667 2.77 0.00 0.00 3.85
201 202 2.203337 GTGGTGCTGCAAGGTCCA 60.203 61.111 2.77 4.53 0.00 4.02
203 204 2.431683 GGTGCTGCAAGGTCCAGA 59.568 61.111 2.77 0.00 32.03 3.86
205 206 1.673665 GTGCTGCAAGGTCCAGAGG 60.674 63.158 2.77 0.00 32.03 3.69
206 207 2.149383 TGCTGCAAGGTCCAGAGGT 61.149 57.895 0.00 0.00 32.03 3.85
207 208 1.673665 GCTGCAAGGTCCAGAGGTG 60.674 63.158 0.00 0.00 32.03 4.00
210 211 3.081554 CAAGGTCCAGAGGTGGGG 58.918 66.667 0.00 0.00 45.11 4.96
211 212 2.204151 AAGGTCCAGAGGTGGGGG 60.204 66.667 0.00 0.00 45.11 5.40
236 237 1.367840 GTCCGAACCAGTCAGCTGT 59.632 57.895 14.67 0.00 41.02 4.40
238 239 0.249868 TCCGAACCAGTCAGCTGTTG 60.250 55.000 14.67 13.17 41.02 3.33
241 242 0.590195 GAACCAGTCAGCTGTTGCAG 59.410 55.000 14.67 2.90 41.02 4.41
281 282 2.202610 CGGAGCTCGTCAATGCGA 60.203 61.111 7.83 0.60 39.22 5.10
352 353 2.124570 AACTATGGCTGGCTGGCG 60.125 61.111 13.03 1.99 45.14 5.69
353 354 2.669133 AACTATGGCTGGCTGGCGA 61.669 57.895 13.03 2.06 45.14 5.54
354 355 2.280660 CTATGGCTGGCTGGCGAG 60.281 66.667 13.03 8.98 45.14 5.03
355 356 4.552365 TATGGCTGGCTGGCGAGC 62.552 66.667 18.70 18.70 45.13 5.03
394 395 2.896685 GGACACCACCATGATTTTCCAA 59.103 45.455 0.00 0.00 0.00 3.53
406 407 1.380524 TTTTCCAAGCGAAACGGTGA 58.619 45.000 0.00 0.00 40.23 4.02
409 411 2.325082 CCAAGCGAAACGGTGAGGG 61.325 63.158 0.00 0.00 37.73 4.30
419 421 2.670148 CGGTGAGGGAGGGGAAAGG 61.670 68.421 0.00 0.00 0.00 3.11
427 429 1.631181 GGGAGGGGAAAGGATAAGGGT 60.631 57.143 0.00 0.00 0.00 4.34
436 442 5.427806 GGGAAAGGATAAGGGTACAAGTACT 59.572 44.000 9.94 0.00 36.36 2.73
450 456 5.618056 ACAAGTACTAATCACTCGAACGA 57.382 39.130 0.00 0.00 0.00 3.85
454 460 1.736126 ACTAATCACTCGAACGAGCGA 59.264 47.619 21.47 18.32 45.54 4.93
460 466 2.254350 TCGAACGAGCGAGTGGTG 59.746 61.111 0.00 0.00 35.01 4.17
461 467 2.050351 CGAACGAGCGAGTGGTGT 60.050 61.111 0.00 0.00 0.00 4.16
479 485 1.738830 TGACCGGCCGAAATTCGAC 60.739 57.895 30.73 9.66 43.74 4.20
504 510 3.618690 GCCTATCACTGGCCTATAAGG 57.381 52.381 3.32 4.67 44.32 2.69
517 523 3.416156 CCTATAAGGCCTCTTCCAATGC 58.584 50.000 5.23 0.00 34.59 3.56
518 524 3.181440 CCTATAAGGCCTCTTCCAATGCA 60.181 47.826 5.23 0.00 34.59 3.96
519 525 3.607490 ATAAGGCCTCTTCCAATGCAT 57.393 42.857 5.23 0.00 34.59 3.96
520 526 2.242882 AAGGCCTCTTCCAATGCATT 57.757 45.000 5.23 5.99 0.00 3.56
521 527 1.481871 AGGCCTCTTCCAATGCATTG 58.518 50.000 28.91 28.91 37.52 2.82
536 542 1.851304 CATTGGTGCTAATGTGGGGT 58.149 50.000 0.88 0.00 34.21 4.95
537 543 1.477700 CATTGGTGCTAATGTGGGGTG 59.522 52.381 0.88 0.00 34.21 4.61
538 544 0.897863 TTGGTGCTAATGTGGGGTGC 60.898 55.000 0.00 0.00 0.00 5.01
539 545 1.000896 GGTGCTAATGTGGGGTGCT 60.001 57.895 0.00 0.00 0.00 4.40
540 546 0.254747 GGTGCTAATGTGGGGTGCTA 59.745 55.000 0.00 0.00 0.00 3.49
541 547 1.340600 GGTGCTAATGTGGGGTGCTAA 60.341 52.381 0.00 0.00 0.00 3.09
542 548 2.442413 GTGCTAATGTGGGGTGCTAAA 58.558 47.619 0.00 0.00 0.00 1.85
543 549 3.023832 GTGCTAATGTGGGGTGCTAAAT 58.976 45.455 0.00 0.00 0.00 1.40
544 550 3.023119 TGCTAATGTGGGGTGCTAAATG 58.977 45.455 0.00 0.00 0.00 2.32
545 551 2.223805 GCTAATGTGGGGTGCTAAATGC 60.224 50.000 0.00 0.00 43.25 3.56
561 567 7.524294 GCTAAATGCATTAAAAAGCTTAGCA 57.476 32.000 21.90 4.29 40.90 3.49
562 568 7.962917 GCTAAATGCATTAAAAAGCTTAGCAA 58.037 30.769 21.90 0.00 40.90 3.91
563 569 7.899841 GCTAAATGCATTAAAAAGCTTAGCAAC 59.100 33.333 21.90 2.54 40.90 4.17
564 570 7.967890 AAATGCATTAAAAAGCTTAGCAACT 57.032 28.000 13.39 0.00 33.91 3.16
566 572 8.466086 AATGCATTAAAAAGCTTAGCAACTAC 57.534 30.769 11.02 0.00 33.91 2.73
567 573 7.214467 TGCATTAAAAAGCTTAGCAACTACT 57.786 32.000 7.07 0.00 0.00 2.57
568 574 7.305474 TGCATTAAAAAGCTTAGCAACTACTC 58.695 34.615 7.07 0.00 0.00 2.59
569 575 6.747739 GCATTAAAAAGCTTAGCAACTACTCC 59.252 38.462 7.07 0.00 0.00 3.85
570 576 6.812879 TTAAAAAGCTTAGCAACTACTCCC 57.187 37.500 7.07 0.00 0.00 4.30
571 577 4.642466 AAAAGCTTAGCAACTACTCCCT 57.358 40.909 7.07 0.00 0.00 4.20
572 578 3.897141 AAGCTTAGCAACTACTCCCTC 57.103 47.619 7.07 0.00 0.00 4.30
573 579 2.112190 AGCTTAGCAACTACTCCCTCC 58.888 52.381 7.07 0.00 0.00 4.30
574 580 1.831736 GCTTAGCAACTACTCCCTCCA 59.168 52.381 0.00 0.00 0.00 3.86
575 581 2.236395 GCTTAGCAACTACTCCCTCCAA 59.764 50.000 0.00 0.00 0.00 3.53
576 582 3.118223 GCTTAGCAACTACTCCCTCCAAT 60.118 47.826 0.00 0.00 0.00 3.16
577 583 4.446371 CTTAGCAACTACTCCCTCCAATG 58.554 47.826 0.00 0.00 0.00 2.82
578 584 1.065126 AGCAACTACTCCCTCCAATGC 60.065 52.381 0.00 0.00 0.00 3.56
579 585 1.340017 GCAACTACTCCCTCCAATGCA 60.340 52.381 0.00 0.00 33.00 3.96
580 586 2.684927 GCAACTACTCCCTCCAATGCAT 60.685 50.000 0.00 0.00 33.00 3.96
581 587 3.624777 CAACTACTCCCTCCAATGCATT 58.375 45.455 5.99 5.99 0.00 3.56
582 588 3.287867 ACTACTCCCTCCAATGCATTG 57.712 47.619 28.91 28.91 37.52 2.82
583 589 1.952296 CTACTCCCTCCAATGCATTGC 59.048 52.381 30.15 0.46 36.48 3.56
584 590 0.333993 ACTCCCTCCAATGCATTGCT 59.666 50.000 30.15 0.00 36.48 3.91
585 591 1.565759 ACTCCCTCCAATGCATTGCTA 59.434 47.619 30.15 19.86 36.48 3.49
586 592 1.952296 CTCCCTCCAATGCATTGCTAC 59.048 52.381 30.15 0.00 36.48 3.58
587 593 1.565759 TCCCTCCAATGCATTGCTACT 59.434 47.619 30.15 0.00 36.48 2.57
588 594 2.025037 TCCCTCCAATGCATTGCTACTT 60.025 45.455 30.15 0.00 36.48 2.24
589 595 3.201930 TCCCTCCAATGCATTGCTACTTA 59.798 43.478 30.15 12.82 36.48 2.24
590 596 3.567164 CCCTCCAATGCATTGCTACTTAG 59.433 47.826 30.15 16.54 36.48 2.18
610 616 2.017782 GCTTTTGTAGCTAAGCCTCCC 58.982 52.381 7.59 0.00 46.77 4.30
611 617 2.356227 GCTTTTGTAGCTAAGCCTCCCT 60.356 50.000 7.59 0.00 46.77 4.20
612 618 3.536570 CTTTTGTAGCTAAGCCTCCCTC 58.463 50.000 0.00 0.00 0.00 4.30
613 619 2.247699 TTGTAGCTAAGCCTCCCTCA 57.752 50.000 0.00 0.00 0.00 3.86
614 620 2.478872 TGTAGCTAAGCCTCCCTCAT 57.521 50.000 0.00 0.00 0.00 2.90
615 621 2.764269 TGTAGCTAAGCCTCCCTCATT 58.236 47.619 0.00 0.00 0.00 2.57
616 622 3.115390 TGTAGCTAAGCCTCCCTCATTT 58.885 45.455 0.00 0.00 0.00 2.32
617 623 4.295201 TGTAGCTAAGCCTCCCTCATTTA 58.705 43.478 0.00 0.00 0.00 1.40
618 624 4.719773 TGTAGCTAAGCCTCCCTCATTTAA 59.280 41.667 0.00 0.00 0.00 1.52
619 625 5.369699 TGTAGCTAAGCCTCCCTCATTTAAT 59.630 40.000 0.00 0.00 0.00 1.40
620 626 4.723309 AGCTAAGCCTCCCTCATTTAATG 58.277 43.478 0.00 0.00 0.00 1.90
621 627 4.166919 AGCTAAGCCTCCCTCATTTAATGT 59.833 41.667 4.77 0.00 0.00 2.71
622 628 4.889995 GCTAAGCCTCCCTCATTTAATGTT 59.110 41.667 4.77 0.00 0.00 2.71
623 629 5.360999 GCTAAGCCTCCCTCATTTAATGTTT 59.639 40.000 4.77 0.00 0.00 2.83
624 630 6.127338 GCTAAGCCTCCCTCATTTAATGTTTT 60.127 38.462 4.77 0.00 0.00 2.43
625 631 7.068226 GCTAAGCCTCCCTCATTTAATGTTTTA 59.932 37.037 4.77 0.00 0.00 1.52
626 632 7.790782 AAGCCTCCCTCATTTAATGTTTTAA 57.209 32.000 4.77 0.00 0.00 1.52
627 633 7.170393 AGCCTCCCTCATTTAATGTTTTAAC 57.830 36.000 4.77 0.00 0.00 2.01
628 634 6.723977 AGCCTCCCTCATTTAATGTTTTAACA 59.276 34.615 4.77 0.00 44.06 2.41
629 635 6.811665 GCCTCCCTCATTTAATGTTTTAACAC 59.188 38.462 4.77 0.00 42.51 3.32
630 636 7.320399 CCTCCCTCATTTAATGTTTTAACACC 58.680 38.462 4.77 0.00 42.51 4.16
631 637 7.039363 CCTCCCTCATTTAATGTTTTAACACCA 60.039 37.037 4.77 0.00 42.51 4.17
632 638 8.251383 TCCCTCATTTAATGTTTTAACACCAA 57.749 30.769 4.77 0.00 42.51 3.67
633 639 8.705594 TCCCTCATTTAATGTTTTAACACCAAA 58.294 29.630 4.77 2.39 42.51 3.28
634 640 9.331282 CCCTCATTTAATGTTTTAACACCAAAA 57.669 29.630 4.77 0.48 42.51 2.44
644 650 6.999456 GTTTTAACACCAAAACACCTTCATG 58.001 36.000 6.59 0.00 44.29 3.07
645 651 2.888834 ACACCAAAACACCTTCATGC 57.111 45.000 0.00 0.00 0.00 4.06
646 652 2.106566 ACACCAAAACACCTTCATGCA 58.893 42.857 0.00 0.00 0.00 3.96
647 653 2.699846 ACACCAAAACACCTTCATGCAT 59.300 40.909 0.00 0.00 0.00 3.96
648 654 3.134442 ACACCAAAACACCTTCATGCATT 59.866 39.130 0.00 0.00 0.00 3.56
649 655 3.495377 CACCAAAACACCTTCATGCATTG 59.505 43.478 0.00 0.00 0.00 2.82
650 656 3.068560 CCAAAACACCTTCATGCATTGG 58.931 45.455 0.00 2.23 34.31 3.16
651 657 3.494749 CCAAAACACCTTCATGCATTGGT 60.495 43.478 0.00 2.95 35.45 3.67
652 658 4.128643 CAAAACACCTTCATGCATTGGTT 58.871 39.130 11.74 3.29 0.00 3.67
653 659 3.389925 AACACCTTCATGCATTGGTTG 57.610 42.857 11.74 10.27 0.00 3.77
654 660 1.619827 ACACCTTCATGCATTGGTTGG 59.380 47.619 11.74 6.32 0.00 3.77
655 661 1.619827 CACCTTCATGCATTGGTTGGT 59.380 47.619 11.74 6.85 0.00 3.67
656 662 2.824936 CACCTTCATGCATTGGTTGGTA 59.175 45.455 11.74 0.00 0.00 3.25
657 663 3.091545 ACCTTCATGCATTGGTTGGTAG 58.908 45.455 0.00 0.00 0.00 3.18
658 664 3.091545 CCTTCATGCATTGGTTGGTAGT 58.908 45.455 0.00 0.00 0.00 2.73
659 665 3.129287 CCTTCATGCATTGGTTGGTAGTC 59.871 47.826 0.00 0.00 0.00 2.59
660 666 3.431673 TCATGCATTGGTTGGTAGTCA 57.568 42.857 0.00 0.00 0.00 3.41
661 667 3.966979 TCATGCATTGGTTGGTAGTCAT 58.033 40.909 0.00 0.00 0.00 3.06
662 668 4.343231 TCATGCATTGGTTGGTAGTCATT 58.657 39.130 0.00 0.00 0.00 2.57
663 669 4.771577 TCATGCATTGGTTGGTAGTCATTT 59.228 37.500 0.00 0.00 0.00 2.32
664 670 5.245751 TCATGCATTGGTTGGTAGTCATTTT 59.754 36.000 0.00 0.00 0.00 1.82
665 671 6.435591 TCATGCATTGGTTGGTAGTCATTTTA 59.564 34.615 0.00 0.00 0.00 1.52
666 672 6.019779 TGCATTGGTTGGTAGTCATTTTAC 57.980 37.500 0.00 0.00 0.00 2.01
667 673 5.536538 TGCATTGGTTGGTAGTCATTTTACA 59.463 36.000 0.00 0.00 0.00 2.41
668 674 6.210385 TGCATTGGTTGGTAGTCATTTTACAT 59.790 34.615 0.00 0.00 0.00 2.29
669 675 7.394641 TGCATTGGTTGGTAGTCATTTTACATA 59.605 33.333 0.00 0.00 0.00 2.29
670 676 7.915397 GCATTGGTTGGTAGTCATTTTACATAG 59.085 37.037 0.00 0.00 0.00 2.23
671 677 7.931578 TTGGTTGGTAGTCATTTTACATAGG 57.068 36.000 0.00 0.00 0.00 2.57
672 678 7.023171 TGGTTGGTAGTCATTTTACATAGGT 57.977 36.000 0.00 0.00 0.00 3.08
673 679 7.107542 TGGTTGGTAGTCATTTTACATAGGTC 58.892 38.462 0.00 0.00 0.00 3.85
674 680 6.541278 GGTTGGTAGTCATTTTACATAGGTCC 59.459 42.308 0.00 0.00 0.00 4.46
675 681 6.877668 TGGTAGTCATTTTACATAGGTCCA 57.122 37.500 0.00 0.00 0.00 4.02
676 682 6.646267 TGGTAGTCATTTTACATAGGTCCAC 58.354 40.000 0.00 0.00 0.00 4.02
677 683 5.751990 GGTAGTCATTTTACATAGGTCCACG 59.248 44.000 0.00 0.00 0.00 4.94
678 684 5.416271 AGTCATTTTACATAGGTCCACGT 57.584 39.130 0.00 0.00 0.00 4.49
679 685 5.175859 AGTCATTTTACATAGGTCCACGTG 58.824 41.667 9.08 9.08 0.00 4.49
680 686 3.936453 TCATTTTACATAGGTCCACGTGC 59.064 43.478 10.91 0.00 0.00 5.34
681 687 3.688694 TTTTACATAGGTCCACGTGCT 57.311 42.857 10.91 4.59 0.00 4.40
682 688 3.688694 TTTACATAGGTCCACGTGCTT 57.311 42.857 10.91 0.00 0.00 3.91
683 689 4.804868 TTTACATAGGTCCACGTGCTTA 57.195 40.909 10.91 0.00 0.00 3.09
684 690 2.961526 ACATAGGTCCACGTGCTTAG 57.038 50.000 10.91 0.00 0.00 2.18
685 691 1.134788 ACATAGGTCCACGTGCTTAGC 60.135 52.381 10.91 7.43 0.00 3.09
686 692 1.134818 CATAGGTCCACGTGCTTAGCA 60.135 52.381 10.91 1.39 35.60 3.49
687 693 1.191535 TAGGTCCACGTGCTTAGCAT 58.808 50.000 11.03 0.00 41.91 3.79
688 694 0.108138 AGGTCCACGTGCTTAGCATC 60.108 55.000 11.03 3.45 41.91 3.91
689 695 1.421410 GGTCCACGTGCTTAGCATCG 61.421 60.000 20.90 20.90 41.91 3.84
690 696 0.736325 GTCCACGTGCTTAGCATCGT 60.736 55.000 21.91 21.91 42.91 3.73
691 697 0.037697 TCCACGTGCTTAGCATCGTT 60.038 50.000 23.89 12.30 41.37 3.85
692 698 0.796312 CCACGTGCTTAGCATCGTTT 59.204 50.000 23.89 8.55 41.37 3.60
693 699 1.201921 CCACGTGCTTAGCATCGTTTC 60.202 52.381 23.89 6.22 41.37 2.78
694 700 1.076332 ACGTGCTTAGCATCGTTTCC 58.924 50.000 21.91 4.30 40.85 3.13
695 701 1.337823 ACGTGCTTAGCATCGTTTCCT 60.338 47.619 21.91 6.33 40.85 3.36
696 702 1.324736 CGTGCTTAGCATCGTTTCCTC 59.675 52.381 11.03 0.00 41.91 3.71
697 703 1.666189 GTGCTTAGCATCGTTTCCTCC 59.334 52.381 11.03 0.00 41.91 4.30
698 704 1.555075 TGCTTAGCATCGTTTCCTCCT 59.445 47.619 1.39 0.00 31.71 3.69
699 705 2.764010 TGCTTAGCATCGTTTCCTCCTA 59.236 45.455 1.39 0.00 31.71 2.94
700 706 3.181475 TGCTTAGCATCGTTTCCTCCTAG 60.181 47.826 1.39 0.00 31.71 3.02
701 707 3.800604 GCTTAGCATCGTTTCCTCCTAGG 60.801 52.174 0.82 0.82 36.46 3.02
702 708 1.123928 AGCATCGTTTCCTCCTAGGG 58.876 55.000 9.46 0.00 35.59 3.53
703 709 0.831307 GCATCGTTTCCTCCTAGGGT 59.169 55.000 9.46 0.00 35.59 4.34
704 710 1.202545 GCATCGTTTCCTCCTAGGGTC 60.203 57.143 9.46 0.00 35.59 4.46
705 711 2.108168 CATCGTTTCCTCCTAGGGTCA 58.892 52.381 9.46 0.00 35.59 4.02
706 712 1.553706 TCGTTTCCTCCTAGGGTCAC 58.446 55.000 9.46 0.00 35.59 3.67
707 713 0.535797 CGTTTCCTCCTAGGGTCACC 59.464 60.000 9.46 0.00 35.59 4.02
708 714 1.652947 GTTTCCTCCTAGGGTCACCA 58.347 55.000 9.46 0.00 40.13 4.17
709 715 2.197465 GTTTCCTCCTAGGGTCACCAT 58.803 52.381 9.46 0.00 40.13 3.55
710 716 3.381335 GTTTCCTCCTAGGGTCACCATA 58.619 50.000 9.46 0.00 40.13 2.74
711 717 3.778629 GTTTCCTCCTAGGGTCACCATAA 59.221 47.826 9.46 0.00 40.13 1.90
712 718 4.295905 TTCCTCCTAGGGTCACCATAAT 57.704 45.455 9.46 0.00 40.13 1.28
713 719 3.587498 TCCTCCTAGGGTCACCATAATG 58.413 50.000 9.46 0.00 40.13 1.90
714 720 2.039084 CCTCCTAGGGTCACCATAATGC 59.961 54.545 9.46 0.00 40.13 3.56
715 721 2.975489 CTCCTAGGGTCACCATAATGCT 59.025 50.000 9.46 0.00 40.13 3.79
716 722 2.972713 TCCTAGGGTCACCATAATGCTC 59.027 50.000 9.46 0.00 40.13 4.26
717 723 2.975489 CCTAGGGTCACCATAATGCTCT 59.025 50.000 0.00 0.00 40.13 4.09
718 724 3.007398 CCTAGGGTCACCATAATGCTCTC 59.993 52.174 0.00 0.00 40.13 3.20
719 725 2.769209 AGGGTCACCATAATGCTCTCT 58.231 47.619 0.00 0.00 40.13 3.10
720 726 2.703007 AGGGTCACCATAATGCTCTCTC 59.297 50.000 0.00 0.00 40.13 3.20
721 727 2.703007 GGGTCACCATAATGCTCTCTCT 59.297 50.000 0.00 0.00 36.50 3.10
722 728 3.244044 GGGTCACCATAATGCTCTCTCTC 60.244 52.174 0.00 0.00 36.50 3.20
723 729 3.244044 GGTCACCATAATGCTCTCTCTCC 60.244 52.174 0.00 0.00 0.00 3.71
724 730 3.640967 GTCACCATAATGCTCTCTCTCCT 59.359 47.826 0.00 0.00 0.00 3.69
725 731 3.894427 TCACCATAATGCTCTCTCTCCTC 59.106 47.826 0.00 0.00 0.00 3.71
726 732 3.896888 CACCATAATGCTCTCTCTCCTCT 59.103 47.826 0.00 0.00 0.00 3.69
727 733 4.344679 CACCATAATGCTCTCTCTCCTCTT 59.655 45.833 0.00 0.00 0.00 2.85
728 734 4.968080 ACCATAATGCTCTCTCTCCTCTTT 59.032 41.667 0.00 0.00 0.00 2.52
729 735 6.041409 CACCATAATGCTCTCTCTCCTCTTTA 59.959 42.308 0.00 0.00 0.00 1.85
730 736 6.613271 ACCATAATGCTCTCTCTCCTCTTTAA 59.387 38.462 0.00 0.00 0.00 1.52
731 737 7.292120 ACCATAATGCTCTCTCTCCTCTTTAAT 59.708 37.037 0.00 0.00 0.00 1.40
732 738 8.156165 CCATAATGCTCTCTCTCCTCTTTAATT 58.844 37.037 0.00 0.00 0.00 1.40
733 739 8.991026 CATAATGCTCTCTCTCCTCTTTAATTG 58.009 37.037 0.00 0.00 0.00 2.32
734 740 4.764172 TGCTCTCTCTCCTCTTTAATTGC 58.236 43.478 0.00 0.00 0.00 3.56
735 741 4.469227 TGCTCTCTCTCCTCTTTAATTGCT 59.531 41.667 0.00 0.00 0.00 3.91
736 742 5.049828 GCTCTCTCTCCTCTTTAATTGCTC 58.950 45.833 0.00 0.00 0.00 4.26
737 743 5.163416 GCTCTCTCTCCTCTTTAATTGCTCT 60.163 44.000 0.00 0.00 0.00 4.09
738 744 6.219417 TCTCTCTCCTCTTTAATTGCTCTG 57.781 41.667 0.00 0.00 0.00 3.35
739 745 4.764172 TCTCTCCTCTTTAATTGCTCTGC 58.236 43.478 0.00 0.00 0.00 4.26
740 746 3.876320 CTCTCCTCTTTAATTGCTCTGCC 59.124 47.826 0.00 0.00 0.00 4.85
741 747 3.264193 TCTCCTCTTTAATTGCTCTGCCA 59.736 43.478 0.00 0.00 0.00 4.92
742 748 3.347216 TCCTCTTTAATTGCTCTGCCAC 58.653 45.455 0.00 0.00 0.00 5.01
743 749 3.084039 CCTCTTTAATTGCTCTGCCACA 58.916 45.455 0.00 0.00 0.00 4.17
744 750 3.698040 CCTCTTTAATTGCTCTGCCACAT 59.302 43.478 0.00 0.00 0.00 3.21
745 751 4.201990 CCTCTTTAATTGCTCTGCCACATC 60.202 45.833 0.00 0.00 0.00 3.06
746 752 4.334552 TCTTTAATTGCTCTGCCACATCA 58.665 39.130 0.00 0.00 0.00 3.07
747 753 4.156556 TCTTTAATTGCTCTGCCACATCAC 59.843 41.667 0.00 0.00 0.00 3.06
748 754 2.211250 AATTGCTCTGCCACATCACT 57.789 45.000 0.00 0.00 0.00 3.41
749 755 2.211250 ATTGCTCTGCCACATCACTT 57.789 45.000 0.00 0.00 0.00 3.16
750 756 1.985473 TTGCTCTGCCACATCACTTT 58.015 45.000 0.00 0.00 0.00 2.66
751 757 1.985473 TGCTCTGCCACATCACTTTT 58.015 45.000 0.00 0.00 0.00 2.27
752 758 2.309613 TGCTCTGCCACATCACTTTTT 58.690 42.857 0.00 0.00 0.00 1.94
773 779 2.990066 ACCTATGTGGCAGTCTTAGC 57.010 50.000 0.00 0.00 40.22 3.09
774 780 2.187958 ACCTATGTGGCAGTCTTAGCA 58.812 47.619 0.00 0.00 40.22 3.49
775 781 2.093447 ACCTATGTGGCAGTCTTAGCAC 60.093 50.000 0.00 0.00 40.22 4.40
776 782 2.555199 CTATGTGGCAGTCTTAGCACC 58.445 52.381 0.00 0.00 0.00 5.01
777 783 0.391661 ATGTGGCAGTCTTAGCACCG 60.392 55.000 0.00 0.00 0.00 4.94
778 784 1.741770 GTGGCAGTCTTAGCACCGG 60.742 63.158 0.00 0.00 0.00 5.28
779 785 2.214216 TGGCAGTCTTAGCACCGGT 61.214 57.895 0.00 0.00 0.00 5.28
780 786 0.901114 TGGCAGTCTTAGCACCGGTA 60.901 55.000 6.87 0.00 0.00 4.02
781 787 0.459759 GGCAGTCTTAGCACCGGTAC 60.460 60.000 6.87 0.00 0.00 3.34
782 788 0.245539 GCAGTCTTAGCACCGGTACA 59.754 55.000 6.87 0.00 0.00 2.90
783 789 1.992170 CAGTCTTAGCACCGGTACAC 58.008 55.000 6.87 0.00 0.00 2.90
784 790 1.544691 CAGTCTTAGCACCGGTACACT 59.455 52.381 6.87 8.10 0.00 3.55
785 791 2.029290 CAGTCTTAGCACCGGTACACTT 60.029 50.000 6.87 0.00 0.00 3.16
786 792 2.029290 AGTCTTAGCACCGGTACACTTG 60.029 50.000 6.87 0.00 0.00 3.16
787 793 1.274167 TCTTAGCACCGGTACACTTGG 59.726 52.381 6.87 0.00 0.00 3.61
788 794 1.274167 CTTAGCACCGGTACACTTGGA 59.726 52.381 6.87 0.00 0.00 3.53
789 795 0.892755 TAGCACCGGTACACTTGGAG 59.107 55.000 6.87 0.00 0.00 3.86
790 796 2.033194 GCACCGGTACACTTGGAGC 61.033 63.158 6.87 0.00 32.39 4.70
791 797 1.369692 CACCGGTACACTTGGAGCA 59.630 57.895 6.87 0.00 0.00 4.26
792 798 0.949105 CACCGGTACACTTGGAGCAC 60.949 60.000 6.87 0.00 0.00 4.40
793 799 1.119574 ACCGGTACACTTGGAGCACT 61.120 55.000 4.49 0.00 0.00 4.40
794 800 0.670546 CCGGTACACTTGGAGCACTG 60.671 60.000 0.00 0.00 0.00 3.66
795 801 0.670546 CGGTACACTTGGAGCACTGG 60.671 60.000 0.00 0.00 0.00 4.00
796 802 0.685097 GGTACACTTGGAGCACTGGA 59.315 55.000 0.00 0.00 0.00 3.86
797 803 1.071699 GGTACACTTGGAGCACTGGAA 59.928 52.381 0.00 0.00 0.00 3.53
798 804 2.486548 GGTACACTTGGAGCACTGGAAA 60.487 50.000 0.00 0.00 0.00 3.13
799 805 2.664402 ACACTTGGAGCACTGGAAAT 57.336 45.000 0.00 0.00 0.00 2.17
800 806 2.233271 ACACTTGGAGCACTGGAAATG 58.767 47.619 0.00 0.00 0.00 2.32
801 807 2.158623 ACACTTGGAGCACTGGAAATGA 60.159 45.455 0.00 0.00 0.00 2.57
802 808 2.227388 CACTTGGAGCACTGGAAATGAC 59.773 50.000 0.00 0.00 0.00 3.06
803 809 1.815003 CTTGGAGCACTGGAAATGACC 59.185 52.381 0.00 0.00 0.00 4.02
804 810 1.067295 TGGAGCACTGGAAATGACCT 58.933 50.000 0.00 0.00 0.00 3.85
805 811 2.265367 TGGAGCACTGGAAATGACCTA 58.735 47.619 0.00 0.00 0.00 3.08
815 821 7.283127 GCACTGGAAATGACCTAATAAATCAGA 59.717 37.037 0.00 0.00 0.00 3.27
840 846 8.713737 AAATCCTAGACGTACTTAAAATCCAC 57.286 34.615 0.00 0.00 0.00 4.02
860 866 2.362717 ACCCGTAGCTCTAGCAAATCTC 59.637 50.000 4.54 0.00 45.16 2.75
862 868 2.290916 CCGTAGCTCTAGCAAATCTCGA 59.709 50.000 4.54 0.00 45.16 4.04
869 875 9.627395 GTAGCTCTAGCAAATCTCGATATAAAA 57.373 33.333 4.54 0.00 45.16 1.52
1198 2182 3.064248 CTCGCTTCGCTGCAGTTCG 62.064 63.158 16.64 11.56 0.00 3.95
1242 2226 5.423886 TGTCTTGGGATTTCAAACCAAAAC 58.576 37.500 0.00 0.00 43.12 2.43
1330 2328 1.750780 GCTGCTAGGGGCCAAAGAC 60.751 63.158 4.39 0.00 40.92 3.01
1344 2342 6.288294 GGGCCAAAGACAAGAATTTTACTTT 58.712 36.000 4.39 0.00 0.00 2.66
1388 2386 9.599322 CTGAACTAACAAACTGCTAATTAACTG 57.401 33.333 0.00 0.00 0.00 3.16
1395 2393 3.522553 ACTGCTAATTAACTGCCGTCTC 58.477 45.455 0.00 0.00 0.00 3.36
1403 2401 0.464036 AACTGCCGTCTCTGTGTTCA 59.536 50.000 0.00 0.00 0.00 3.18
1750 2748 4.047125 CCAACGGGGTCCATGCCT 62.047 66.667 0.00 0.00 0.00 4.75
1974 2978 1.301953 TGTTCGACTCGTCCGAGGA 60.302 57.895 19.71 6.61 45.88 3.71
2053 3057 4.838152 CCCCATGGTGGCGACGAG 62.838 72.222 11.73 0.00 35.79 4.18
2133 3137 1.272769 GTTGAAGCAGTACTCCTCGGT 59.727 52.381 0.00 0.00 0.00 4.69
2508 3524 2.476051 CTTCATGTGCGACGTGGC 59.524 61.111 16.33 16.33 35.86 5.01
2509 3525 2.280457 TTCATGTGCGACGTGGCA 60.280 55.556 21.95 21.95 41.45 4.92
2618 3634 5.587043 AGAGTAGAGATCAACGTCTAAGTGG 59.413 44.000 0.00 0.00 0.00 4.00
2713 3739 4.321527 GCTCCTAGCTTGCTTGTTTGATTT 60.322 41.667 0.00 0.00 38.45 2.17
2804 3835 7.495934 CCAATTCGAGTCCTTGATTACACTATT 59.504 37.037 0.00 0.00 0.00 1.73
2805 3836 8.331022 CAATTCGAGTCCTTGATTACACTATTG 58.669 37.037 0.00 0.00 0.00 1.90
2806 3837 6.525578 TCGAGTCCTTGATTACACTATTGT 57.474 37.500 0.00 0.00 40.02 2.71
2807 3838 7.634671 TCGAGTCCTTGATTACACTATTGTA 57.365 36.000 0.00 0.00 37.15 2.41
2809 3840 8.692710 TCGAGTCCTTGATTACACTATTGTATT 58.307 33.333 0.00 0.00 38.05 1.89
2810 3841 8.969267 CGAGTCCTTGATTACACTATTGTATTC 58.031 37.037 7.73 7.73 38.05 1.75
2815 3846 8.786898 CCTTGATTACACTATTGTATTCATGGG 58.213 37.037 24.50 19.78 46.13 4.00
2895 3930 1.632018 CCCAATACGCCCTTCCCAGA 61.632 60.000 0.00 0.00 0.00 3.86
3046 4085 2.544698 CCGGGCGAAACGGTTTTGA 61.545 57.895 22.04 0.00 46.03 2.69
3235 4277 3.594568 CGTACACACGCCTCCCTA 58.405 61.111 0.00 0.00 42.05 3.53
3286 4341 1.963338 AGACGCTGTGCTCTTTGCC 60.963 57.895 0.00 0.00 42.00 4.52
3287 4342 1.963338 GACGCTGTGCTCTTTGCCT 60.963 57.895 0.00 0.00 42.00 4.75
3353 4422 2.476051 CACGACAATGTGCGAGCC 59.524 61.111 11.02 0.00 32.31 4.70
3570 4640 4.093952 GAGGTCGACCGCGTTCGA 62.094 66.667 25.13 25.13 45.62 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.853594 CACAAGTCAACAACACATGCAC 59.146 45.455 0.00 0.00 0.00 4.57
2 3 3.149436 ACACAAGTCAACAACACATGC 57.851 42.857 0.00 0.00 0.00 4.06
4 5 4.199310 AGCTACACAAGTCAACAACACAT 58.801 39.130 0.00 0.00 0.00 3.21
6 7 4.616181 AAGCTACACAAGTCAACAACAC 57.384 40.909 0.00 0.00 0.00 3.32
7 8 4.814234 CCTAAGCTACACAAGTCAACAACA 59.186 41.667 0.00 0.00 0.00 3.33
8 9 5.054477 TCCTAAGCTACACAAGTCAACAAC 58.946 41.667 0.00 0.00 0.00 3.32
9 10 5.284861 TCCTAAGCTACACAAGTCAACAA 57.715 39.130 0.00 0.00 0.00 2.83
10 11 4.799586 GCTCCTAAGCTACACAAGTCAACA 60.800 45.833 0.00 0.00 45.55 3.33
11 12 3.680458 GCTCCTAAGCTACACAAGTCAAC 59.320 47.826 0.00 0.00 45.55 3.18
12 13 3.926616 GCTCCTAAGCTACACAAGTCAA 58.073 45.455 0.00 0.00 45.55 3.18
13 14 3.594603 GCTCCTAAGCTACACAAGTCA 57.405 47.619 0.00 0.00 45.55 3.41
25 26 3.695060 TCGAACCAGTAGAAGCTCCTAAG 59.305 47.826 0.00 0.00 0.00 2.18
26 27 3.693807 TCGAACCAGTAGAAGCTCCTAA 58.306 45.455 0.00 0.00 0.00 2.69
27 28 3.361281 TCGAACCAGTAGAAGCTCCTA 57.639 47.619 0.00 0.00 0.00 2.94
28 29 2.217510 TCGAACCAGTAGAAGCTCCT 57.782 50.000 0.00 0.00 0.00 3.69
29 30 4.650754 TTATCGAACCAGTAGAAGCTCC 57.349 45.455 0.00 0.00 0.00 4.70
30 31 6.508777 AGATTTATCGAACCAGTAGAAGCTC 58.491 40.000 0.00 0.00 0.00 4.09
31 32 6.472686 AGATTTATCGAACCAGTAGAAGCT 57.527 37.500 0.00 0.00 0.00 3.74
32 33 7.921745 ACTAAGATTTATCGAACCAGTAGAAGC 59.078 37.037 0.00 0.00 0.00 3.86
33 34 9.804758 AACTAAGATTTATCGAACCAGTAGAAG 57.195 33.333 0.00 0.00 0.00 2.85
34 35 9.798994 GAACTAAGATTTATCGAACCAGTAGAA 57.201 33.333 0.00 0.00 0.00 2.10
35 36 9.186837 AGAACTAAGATTTATCGAACCAGTAGA 57.813 33.333 0.00 0.00 0.00 2.59
36 37 9.804758 AAGAACTAAGATTTATCGAACCAGTAG 57.195 33.333 0.00 0.00 0.00 2.57
45 46 9.250624 CCCTCAGTTAAGAACTAAGATTTATCG 57.749 37.037 0.00 0.00 40.46 2.92
49 50 9.862149 TTTTCCCTCAGTTAAGAACTAAGATTT 57.138 29.630 0.00 0.00 40.46 2.17
52 53 9.862149 AAATTTTCCCTCAGTTAAGAACTAAGA 57.138 29.630 0.00 0.00 40.46 2.10
53 54 9.899226 CAAATTTTCCCTCAGTTAAGAACTAAG 57.101 33.333 0.00 0.00 40.46 2.18
54 55 8.357402 GCAAATTTTCCCTCAGTTAAGAACTAA 58.643 33.333 0.00 0.00 40.46 2.24
55 56 7.724061 AGCAAATTTTCCCTCAGTTAAGAACTA 59.276 33.333 0.00 0.00 40.46 2.24
56 57 6.551227 AGCAAATTTTCCCTCAGTTAAGAACT 59.449 34.615 0.00 0.00 44.06 3.01
57 58 6.749139 AGCAAATTTTCCCTCAGTTAAGAAC 58.251 36.000 0.00 0.00 0.00 3.01
58 59 6.976934 AGCAAATTTTCCCTCAGTTAAGAA 57.023 33.333 0.00 0.00 0.00 2.52
59 60 7.231467 AGTAGCAAATTTTCCCTCAGTTAAGA 58.769 34.615 0.00 0.00 0.00 2.10
60 61 7.454260 AGTAGCAAATTTTCCCTCAGTTAAG 57.546 36.000 0.00 0.00 0.00 1.85
61 62 7.657336 CAAGTAGCAAATTTTCCCTCAGTTAA 58.343 34.615 0.00 0.00 0.00 2.01
62 63 6.294508 GCAAGTAGCAAATTTTCCCTCAGTTA 60.295 38.462 0.00 0.00 44.79 2.24
63 64 5.509670 GCAAGTAGCAAATTTTCCCTCAGTT 60.510 40.000 0.00 0.00 44.79 3.16
64 65 4.021981 GCAAGTAGCAAATTTTCCCTCAGT 60.022 41.667 0.00 0.00 44.79 3.41
65 66 4.488879 GCAAGTAGCAAATTTTCCCTCAG 58.511 43.478 0.00 0.00 44.79 3.35
66 67 4.519540 GCAAGTAGCAAATTTTCCCTCA 57.480 40.909 0.00 0.00 44.79 3.86
96 97 2.059756 TGATTCCCCCAAGAGGAAGT 57.940 50.000 0.00 0.00 46.29 3.01
100 101 4.105377 AGTCATTATGATTCCCCCAAGAGG 59.895 45.833 0.00 0.00 0.00 3.69
162 163 2.676750 CGTTGTAGGGCTAGCACAATGA 60.677 50.000 24.13 6.02 40.16 2.57
170 171 0.108329 CACCACCGTTGTAGGGCTAG 60.108 60.000 0.00 0.00 35.02 3.42
171 172 1.976898 CACCACCGTTGTAGGGCTA 59.023 57.895 0.00 0.00 35.02 3.93
190 191 1.002868 CCACCTCTGGACCTTGCAG 60.003 63.158 0.00 0.00 40.55 4.41
210 211 1.002502 CTGGTTCGGACCCTTTCCC 60.003 63.158 11.33 0.00 45.92 3.97
211 212 0.321387 GACTGGTTCGGACCCTTTCC 60.321 60.000 11.33 0.00 45.92 3.13
212 213 0.395312 TGACTGGTTCGGACCCTTTC 59.605 55.000 11.33 4.42 45.92 2.62
213 214 0.396811 CTGACTGGTTCGGACCCTTT 59.603 55.000 11.33 0.00 45.92 3.11
214 215 2.058675 CTGACTGGTTCGGACCCTT 58.941 57.895 11.33 0.00 45.92 3.95
215 216 2.584391 GCTGACTGGTTCGGACCCT 61.584 63.158 11.33 0.00 45.92 4.34
264 265 2.202610 TCGCATTGACGAGCTCCG 60.203 61.111 8.47 6.07 45.44 4.63
298 299 3.869272 GCGAGCTTGCCATGTCCG 61.869 66.667 15.66 0.00 0.00 4.79
331 332 0.754217 CCAGCCAGCCATAGTTGCAT 60.754 55.000 0.00 0.00 0.00 3.96
332 333 1.378911 CCAGCCAGCCATAGTTGCA 60.379 57.895 0.00 0.00 0.00 4.08
338 339 4.552365 GCTCGCCAGCCAGCCATA 62.552 66.667 0.00 0.00 40.14 2.74
359 360 3.479269 GTCCCTCGCGAGCAAACG 61.479 66.667 30.49 15.98 0.00 3.60
360 361 2.357034 TGTCCCTCGCGAGCAAAC 60.357 61.111 30.49 24.39 0.00 2.93
361 362 2.357034 GTGTCCCTCGCGAGCAAA 60.357 61.111 30.49 14.46 0.00 3.68
362 363 4.373116 GGTGTCCCTCGCGAGCAA 62.373 66.667 30.49 17.08 0.00 3.91
371 372 2.557452 GGAAAATCATGGTGGTGTCCCT 60.557 50.000 0.00 0.00 0.00 4.20
372 373 1.824852 GGAAAATCATGGTGGTGTCCC 59.175 52.381 0.00 0.00 0.00 4.46
394 395 2.657237 CTCCCTCACCGTTTCGCT 59.343 61.111 0.00 0.00 0.00 4.93
406 407 1.346570 CCCTTATCCTTTCCCCTCCCT 60.347 57.143 0.00 0.00 0.00 4.20
409 411 3.390819 TGTACCCTTATCCTTTCCCCTC 58.609 50.000 0.00 0.00 0.00 4.30
419 421 8.074972 CGAGTGATTAGTACTTGTACCCTTATC 58.925 40.741 0.00 6.36 0.00 1.75
427 429 6.674037 GCTCGTTCGAGTGATTAGTACTTGTA 60.674 42.308 20.57 0.00 34.93 2.41
450 456 3.991051 CCGGTCACACCACTCGCT 61.991 66.667 0.00 0.00 38.47 4.93
456 462 2.684192 AATTTCGGCCGGTCACACCA 62.684 55.000 27.83 0.00 38.47 4.17
457 463 1.918868 GAATTTCGGCCGGTCACACC 61.919 60.000 27.83 5.21 34.05 4.16
459 465 2.030401 CGAATTTCGGCCGGTCACA 61.030 57.895 27.83 1.12 36.00 3.58
460 466 1.738830 TCGAATTTCGGCCGGTCAC 60.739 57.895 27.83 12.32 40.88 3.67
461 467 1.738830 GTCGAATTTCGGCCGGTCA 60.739 57.895 27.83 10.06 38.79 4.02
502 508 1.481871 CAATGCATTGGAAGAGGCCT 58.518 50.000 28.34 3.86 34.22 5.19
517 523 1.477700 CACCCCACATTAGCACCAATG 59.522 52.381 4.66 4.66 40.93 2.82
518 524 1.851304 CACCCCACATTAGCACCAAT 58.149 50.000 0.00 0.00 0.00 3.16
519 525 0.897863 GCACCCCACATTAGCACCAA 60.898 55.000 0.00 0.00 0.00 3.67
520 526 1.304052 GCACCCCACATTAGCACCA 60.304 57.895 0.00 0.00 0.00 4.17
521 527 0.254747 TAGCACCCCACATTAGCACC 59.745 55.000 0.00 0.00 0.00 5.01
522 528 2.122783 TTAGCACCCCACATTAGCAC 57.877 50.000 0.00 0.00 0.00 4.40
523 529 2.889170 TTTAGCACCCCACATTAGCA 57.111 45.000 0.00 0.00 0.00 3.49
524 530 2.223805 GCATTTAGCACCCCACATTAGC 60.224 50.000 0.00 0.00 44.79 3.09
525 531 3.715628 GCATTTAGCACCCCACATTAG 57.284 47.619 0.00 0.00 44.79 1.73
537 543 7.524294 TGCTAAGCTTTTTAATGCATTTAGC 57.476 32.000 18.75 20.05 39.95 3.09
538 544 9.143631 AGTTGCTAAGCTTTTTAATGCATTTAG 57.856 29.630 18.75 11.21 0.00 1.85
540 546 7.967890 AGTTGCTAAGCTTTTTAATGCATTT 57.032 28.000 18.75 1.81 0.00 2.32
541 547 8.306761 AGTAGTTGCTAAGCTTTTTAATGCATT 58.693 29.630 17.56 17.56 0.00 3.56
542 548 7.830739 AGTAGTTGCTAAGCTTTTTAATGCAT 58.169 30.769 3.20 0.00 0.00 3.96
543 549 7.214467 AGTAGTTGCTAAGCTTTTTAATGCA 57.786 32.000 3.20 3.69 0.00 3.96
544 550 6.747739 GGAGTAGTTGCTAAGCTTTTTAATGC 59.252 38.462 3.20 0.97 0.00 3.56
545 551 7.121315 AGGGAGTAGTTGCTAAGCTTTTTAATG 59.879 37.037 3.20 0.00 0.00 1.90
546 552 7.175797 AGGGAGTAGTTGCTAAGCTTTTTAAT 58.824 34.615 3.20 0.00 0.00 1.40
547 553 6.540083 AGGGAGTAGTTGCTAAGCTTTTTAA 58.460 36.000 3.20 0.00 0.00 1.52
548 554 6.123045 AGGGAGTAGTTGCTAAGCTTTTTA 57.877 37.500 3.20 0.00 0.00 1.52
549 555 4.986783 AGGGAGTAGTTGCTAAGCTTTTT 58.013 39.130 3.20 0.00 0.00 1.94
550 556 4.565861 GGAGGGAGTAGTTGCTAAGCTTTT 60.566 45.833 3.20 0.00 0.00 2.27
551 557 3.055021 GGAGGGAGTAGTTGCTAAGCTTT 60.055 47.826 3.20 0.00 0.00 3.51
552 558 2.502130 GGAGGGAGTAGTTGCTAAGCTT 59.498 50.000 3.48 3.48 0.00 3.74
553 559 2.112190 GGAGGGAGTAGTTGCTAAGCT 58.888 52.381 0.00 0.00 0.00 3.74
554 560 1.831736 TGGAGGGAGTAGTTGCTAAGC 59.168 52.381 0.00 0.00 0.00 3.09
555 561 4.446371 CATTGGAGGGAGTAGTTGCTAAG 58.554 47.826 0.00 0.00 0.00 2.18
556 562 3.370527 GCATTGGAGGGAGTAGTTGCTAA 60.371 47.826 0.00 0.00 0.00 3.09
557 563 2.170607 GCATTGGAGGGAGTAGTTGCTA 59.829 50.000 0.00 0.00 0.00 3.49
558 564 1.065126 GCATTGGAGGGAGTAGTTGCT 60.065 52.381 0.00 0.00 0.00 3.91
559 565 1.340017 TGCATTGGAGGGAGTAGTTGC 60.340 52.381 0.00 0.00 0.00 4.17
560 566 2.787473 TGCATTGGAGGGAGTAGTTG 57.213 50.000 0.00 0.00 0.00 3.16
561 567 3.624777 CAATGCATTGGAGGGAGTAGTT 58.375 45.455 28.34 0.00 34.22 2.24
562 568 2.684927 GCAATGCATTGGAGGGAGTAGT 60.685 50.000 34.23 0.00 38.21 2.73
563 569 1.952296 GCAATGCATTGGAGGGAGTAG 59.048 52.381 34.23 10.97 38.21 2.57
564 570 1.565759 AGCAATGCATTGGAGGGAGTA 59.434 47.619 34.23 0.00 38.21 2.59
565 571 0.333993 AGCAATGCATTGGAGGGAGT 59.666 50.000 34.23 0.00 38.21 3.85
566 572 1.952296 GTAGCAATGCATTGGAGGGAG 59.048 52.381 34.23 13.02 38.21 4.30
567 573 1.565759 AGTAGCAATGCATTGGAGGGA 59.434 47.619 34.23 5.35 38.21 4.20
568 574 2.062971 AGTAGCAATGCATTGGAGGG 57.937 50.000 34.23 14.38 38.21 4.30
569 575 4.825546 CTAAGTAGCAATGCATTGGAGG 57.174 45.455 34.23 14.73 38.21 4.30
591 597 3.055094 TGAGGGAGGCTTAGCTACAAAAG 60.055 47.826 3.59 0.00 0.00 2.27
592 598 2.910319 TGAGGGAGGCTTAGCTACAAAA 59.090 45.455 3.59 0.00 0.00 2.44
593 599 2.546899 TGAGGGAGGCTTAGCTACAAA 58.453 47.619 3.59 0.00 0.00 2.83
594 600 2.247699 TGAGGGAGGCTTAGCTACAA 57.752 50.000 3.59 0.00 0.00 2.41
595 601 2.478872 ATGAGGGAGGCTTAGCTACA 57.521 50.000 3.59 0.00 0.00 2.74
596 602 3.847671 AAATGAGGGAGGCTTAGCTAC 57.152 47.619 3.59 0.00 0.00 3.58
597 603 5.369699 ACATTAAATGAGGGAGGCTTAGCTA 59.630 40.000 3.59 0.00 0.00 3.32
598 604 4.166919 ACATTAAATGAGGGAGGCTTAGCT 59.833 41.667 3.59 0.00 0.00 3.32
599 605 4.464947 ACATTAAATGAGGGAGGCTTAGC 58.535 43.478 0.00 0.00 0.00 3.09
600 606 7.410120 AAAACATTAAATGAGGGAGGCTTAG 57.590 36.000 0.00 0.00 0.00 2.18
601 607 8.745590 GTTAAAACATTAAATGAGGGAGGCTTA 58.254 33.333 0.00 0.00 0.00 3.09
602 608 7.234577 TGTTAAAACATTAAATGAGGGAGGCTT 59.765 33.333 0.00 0.00 33.17 4.35
603 609 6.723977 TGTTAAAACATTAAATGAGGGAGGCT 59.276 34.615 0.00 0.00 33.17 4.58
604 610 6.811665 GTGTTAAAACATTAAATGAGGGAGGC 59.188 38.462 0.00 0.00 41.59 4.70
605 611 7.039363 TGGTGTTAAAACATTAAATGAGGGAGG 60.039 37.037 0.00 0.00 41.59 4.30
606 612 7.891561 TGGTGTTAAAACATTAAATGAGGGAG 58.108 34.615 0.00 0.00 41.59 4.30
607 613 7.841282 TGGTGTTAAAACATTAAATGAGGGA 57.159 32.000 0.00 0.00 41.59 4.20
608 614 8.894768 TTTGGTGTTAAAACATTAAATGAGGG 57.105 30.769 0.00 0.00 41.59 4.30
620 626 6.456315 GCATGAAGGTGTTTTGGTGTTAAAAC 60.456 38.462 0.00 7.06 45.92 2.43
621 627 5.582665 GCATGAAGGTGTTTTGGTGTTAAAA 59.417 36.000 0.00 0.00 0.00 1.52
622 628 5.112686 GCATGAAGGTGTTTTGGTGTTAAA 58.887 37.500 0.00 0.00 0.00 1.52
623 629 4.160439 TGCATGAAGGTGTTTTGGTGTTAA 59.840 37.500 0.00 0.00 0.00 2.01
624 630 3.701542 TGCATGAAGGTGTTTTGGTGTTA 59.298 39.130 0.00 0.00 0.00 2.41
625 631 2.499289 TGCATGAAGGTGTTTTGGTGTT 59.501 40.909 0.00 0.00 0.00 3.32
626 632 2.106566 TGCATGAAGGTGTTTTGGTGT 58.893 42.857 0.00 0.00 0.00 4.16
627 633 2.886862 TGCATGAAGGTGTTTTGGTG 57.113 45.000 0.00 0.00 0.00 4.17
628 634 3.494749 CCAATGCATGAAGGTGTTTTGGT 60.495 43.478 0.00 0.00 32.92 3.67
629 635 3.068560 CCAATGCATGAAGGTGTTTTGG 58.931 45.455 0.00 0.00 31.65 3.28
630 636 3.731089 ACCAATGCATGAAGGTGTTTTG 58.269 40.909 15.58 0.87 32.04 2.44
631 637 4.128643 CAACCAATGCATGAAGGTGTTTT 58.871 39.130 16.67 2.03 33.93 2.43
632 638 3.494749 CCAACCAATGCATGAAGGTGTTT 60.495 43.478 16.67 2.33 33.93 2.83
633 639 2.037511 CCAACCAATGCATGAAGGTGTT 59.962 45.455 16.67 5.13 33.93 3.32
634 640 1.619827 CCAACCAATGCATGAAGGTGT 59.380 47.619 16.67 7.10 33.93 4.16
635 641 1.619827 ACCAACCAATGCATGAAGGTG 59.380 47.619 16.67 9.94 33.93 4.00
636 642 2.014010 ACCAACCAATGCATGAAGGT 57.986 45.000 11.73 11.73 35.47 3.50
637 643 3.091545 ACTACCAACCAATGCATGAAGG 58.908 45.455 0.00 5.70 0.00 3.46
638 644 3.758023 TGACTACCAACCAATGCATGAAG 59.242 43.478 0.00 0.00 0.00 3.02
639 645 3.760738 TGACTACCAACCAATGCATGAA 58.239 40.909 0.00 0.00 0.00 2.57
640 646 3.431673 TGACTACCAACCAATGCATGA 57.568 42.857 0.00 0.00 0.00 3.07
641 647 4.724074 AATGACTACCAACCAATGCATG 57.276 40.909 0.00 0.00 0.00 4.06
642 648 5.743636 AAAATGACTACCAACCAATGCAT 57.256 34.783 0.00 0.00 0.00 3.96
643 649 5.536538 TGTAAAATGACTACCAACCAATGCA 59.463 36.000 0.00 0.00 0.00 3.96
644 650 6.019779 TGTAAAATGACTACCAACCAATGC 57.980 37.500 0.00 0.00 0.00 3.56
645 651 8.405531 CCTATGTAAAATGACTACCAACCAATG 58.594 37.037 0.00 0.00 0.00 2.82
646 652 8.113462 ACCTATGTAAAATGACTACCAACCAAT 58.887 33.333 0.00 0.00 0.00 3.16
647 653 7.463431 ACCTATGTAAAATGACTACCAACCAA 58.537 34.615 0.00 0.00 0.00 3.67
648 654 7.023171 ACCTATGTAAAATGACTACCAACCA 57.977 36.000 0.00 0.00 0.00 3.67
649 655 6.541278 GGACCTATGTAAAATGACTACCAACC 59.459 42.308 0.00 0.00 0.00 3.77
650 656 7.065443 GTGGACCTATGTAAAATGACTACCAAC 59.935 40.741 0.00 0.00 0.00 3.77
651 657 7.107542 GTGGACCTATGTAAAATGACTACCAA 58.892 38.462 0.00 0.00 0.00 3.67
652 658 6.628621 CGTGGACCTATGTAAAATGACTACCA 60.629 42.308 0.00 0.00 0.00 3.25
653 659 5.751990 CGTGGACCTATGTAAAATGACTACC 59.248 44.000 0.00 0.00 0.00 3.18
654 660 6.255020 CACGTGGACCTATGTAAAATGACTAC 59.745 42.308 7.95 0.00 0.00 2.73
655 661 6.334989 CACGTGGACCTATGTAAAATGACTA 58.665 40.000 7.95 0.00 0.00 2.59
656 662 5.175859 CACGTGGACCTATGTAAAATGACT 58.824 41.667 7.95 0.00 0.00 3.41
657 663 4.201783 GCACGTGGACCTATGTAAAATGAC 60.202 45.833 18.88 0.00 0.00 3.06
658 664 3.936453 GCACGTGGACCTATGTAAAATGA 59.064 43.478 18.88 0.00 0.00 2.57
659 665 3.938963 AGCACGTGGACCTATGTAAAATG 59.061 43.478 18.88 0.00 0.00 2.32
660 666 4.216411 AGCACGTGGACCTATGTAAAAT 57.784 40.909 18.88 0.00 0.00 1.82
661 667 3.688694 AGCACGTGGACCTATGTAAAA 57.311 42.857 18.88 0.00 0.00 1.52
662 668 3.688694 AAGCACGTGGACCTATGTAAA 57.311 42.857 18.88 0.00 0.00 2.01
663 669 3.429822 GCTAAGCACGTGGACCTATGTAA 60.430 47.826 18.88 0.00 0.00 2.41
664 670 2.100252 GCTAAGCACGTGGACCTATGTA 59.900 50.000 18.88 0.00 0.00 2.29
665 671 1.134788 GCTAAGCACGTGGACCTATGT 60.135 52.381 18.88 0.00 0.00 2.29
666 672 1.134818 TGCTAAGCACGTGGACCTATG 60.135 52.381 18.88 3.95 31.71 2.23
667 673 1.191535 TGCTAAGCACGTGGACCTAT 58.808 50.000 18.88 0.49 31.71 2.57
668 674 1.136305 GATGCTAAGCACGTGGACCTA 59.864 52.381 18.88 0.00 43.04 3.08
669 675 0.108138 GATGCTAAGCACGTGGACCT 60.108 55.000 18.88 2.63 43.04 3.85
670 676 1.421410 CGATGCTAAGCACGTGGACC 61.421 60.000 18.88 0.00 43.04 4.46
671 677 0.736325 ACGATGCTAAGCACGTGGAC 60.736 55.000 18.88 0.66 43.04 4.02
672 678 0.037697 AACGATGCTAAGCACGTGGA 60.038 50.000 18.88 0.00 43.04 4.02
673 679 0.796312 AAACGATGCTAAGCACGTGG 59.204 50.000 18.88 0.86 43.04 4.94
674 680 1.201921 GGAAACGATGCTAAGCACGTG 60.202 52.381 12.28 12.28 43.04 4.49
675 681 1.076332 GGAAACGATGCTAAGCACGT 58.924 50.000 0.00 0.00 43.04 4.49
676 682 1.324736 GAGGAAACGATGCTAAGCACG 59.675 52.381 0.00 0.00 43.04 5.34
677 683 1.666189 GGAGGAAACGATGCTAAGCAC 59.334 52.381 0.00 0.00 43.04 4.40
678 684 1.555075 AGGAGGAAACGATGCTAAGCA 59.445 47.619 0.00 0.00 44.86 3.91
679 685 2.317530 AGGAGGAAACGATGCTAAGC 57.682 50.000 0.00 0.00 0.00 3.09
680 686 3.243907 CCCTAGGAGGAAACGATGCTAAG 60.244 52.174 11.48 0.00 37.67 2.18
681 687 2.698797 CCCTAGGAGGAAACGATGCTAA 59.301 50.000 11.48 0.00 37.67 3.09
682 688 2.317040 CCCTAGGAGGAAACGATGCTA 58.683 52.381 11.48 0.00 37.67 3.49
683 689 1.123928 CCCTAGGAGGAAACGATGCT 58.876 55.000 11.48 0.00 37.67 3.79
684 690 0.831307 ACCCTAGGAGGAAACGATGC 59.169 55.000 11.48 0.00 37.67 3.91
685 691 2.108168 TGACCCTAGGAGGAAACGATG 58.892 52.381 11.48 0.00 37.67 3.84
686 692 2.108970 GTGACCCTAGGAGGAAACGAT 58.891 52.381 11.48 0.00 37.67 3.73
687 693 1.553706 GTGACCCTAGGAGGAAACGA 58.446 55.000 11.48 0.00 37.67 3.85
688 694 0.535797 GGTGACCCTAGGAGGAAACG 59.464 60.000 11.48 0.00 37.67 3.60
689 695 1.652947 TGGTGACCCTAGGAGGAAAC 58.347 55.000 11.48 0.93 37.67 2.78
690 696 2.661176 ATGGTGACCCTAGGAGGAAA 57.339 50.000 11.48 0.00 37.67 3.13
691 697 3.788116 TTATGGTGACCCTAGGAGGAA 57.212 47.619 11.48 0.00 37.67 3.36
692 698 3.587498 CATTATGGTGACCCTAGGAGGA 58.413 50.000 11.48 0.00 37.67 3.71
693 699 2.039084 GCATTATGGTGACCCTAGGAGG 59.961 54.545 11.48 0.00 34.30 4.30
694 700 2.975489 AGCATTATGGTGACCCTAGGAG 59.025 50.000 11.48 2.69 0.00 3.69
695 701 2.972713 GAGCATTATGGTGACCCTAGGA 59.027 50.000 11.48 0.00 0.00 2.94
696 702 2.975489 AGAGCATTATGGTGACCCTAGG 59.025 50.000 0.19 0.06 0.00 3.02
697 703 3.900601 AGAGAGCATTATGGTGACCCTAG 59.099 47.826 0.19 0.00 0.00 3.02
698 704 3.898123 GAGAGAGCATTATGGTGACCCTA 59.102 47.826 0.19 0.00 0.00 3.53
699 705 2.703007 GAGAGAGCATTATGGTGACCCT 59.297 50.000 0.19 0.00 0.00 4.34
700 706 2.703007 AGAGAGAGCATTATGGTGACCC 59.297 50.000 0.19 0.00 0.00 4.46
701 707 3.244044 GGAGAGAGAGCATTATGGTGACC 60.244 52.174 0.19 0.00 0.00 4.02
702 708 3.640967 AGGAGAGAGAGCATTATGGTGAC 59.359 47.826 0.19 0.00 0.00 3.67
703 709 3.894427 GAGGAGAGAGAGCATTATGGTGA 59.106 47.826 0.19 0.00 0.00 4.02
704 710 3.896888 AGAGGAGAGAGAGCATTATGGTG 59.103 47.826 0.19 0.00 0.00 4.17
705 711 4.197559 AGAGGAGAGAGAGCATTATGGT 57.802 45.455 0.00 0.00 0.00 3.55
706 712 5.549742 AAAGAGGAGAGAGAGCATTATGG 57.450 43.478 0.00 0.00 0.00 2.74
707 713 8.991026 CAATTAAAGAGGAGAGAGAGCATTATG 58.009 37.037 0.00 0.00 0.00 1.90
708 714 7.661027 GCAATTAAAGAGGAGAGAGAGCATTAT 59.339 37.037 0.00 0.00 0.00 1.28
709 715 6.989169 GCAATTAAAGAGGAGAGAGAGCATTA 59.011 38.462 0.00 0.00 0.00 1.90
710 716 5.821995 GCAATTAAAGAGGAGAGAGAGCATT 59.178 40.000 0.00 0.00 0.00 3.56
711 717 5.130809 AGCAATTAAAGAGGAGAGAGAGCAT 59.869 40.000 0.00 0.00 0.00 3.79
712 718 4.469227 AGCAATTAAAGAGGAGAGAGAGCA 59.531 41.667 0.00 0.00 0.00 4.26
713 719 5.022282 AGCAATTAAAGAGGAGAGAGAGC 57.978 43.478 0.00 0.00 0.00 4.09
714 720 6.275335 CAGAGCAATTAAAGAGGAGAGAGAG 58.725 44.000 0.00 0.00 0.00 3.20
715 721 5.395103 GCAGAGCAATTAAAGAGGAGAGAGA 60.395 44.000 0.00 0.00 0.00 3.10
716 722 4.810491 GCAGAGCAATTAAAGAGGAGAGAG 59.190 45.833 0.00 0.00 0.00 3.20
717 723 4.383552 GGCAGAGCAATTAAAGAGGAGAGA 60.384 45.833 0.00 0.00 0.00 3.10
718 724 3.876320 GGCAGAGCAATTAAAGAGGAGAG 59.124 47.826 0.00 0.00 0.00 3.20
719 725 3.264193 TGGCAGAGCAATTAAAGAGGAGA 59.736 43.478 0.00 0.00 0.00 3.71
720 726 3.376546 GTGGCAGAGCAATTAAAGAGGAG 59.623 47.826 0.00 0.00 0.00 3.69
721 727 3.244875 TGTGGCAGAGCAATTAAAGAGGA 60.245 43.478 0.00 0.00 0.00 3.71
722 728 3.084039 TGTGGCAGAGCAATTAAAGAGG 58.916 45.455 0.00 0.00 0.00 3.69
723 729 4.397103 TGATGTGGCAGAGCAATTAAAGAG 59.603 41.667 0.00 0.00 0.00 2.85
724 730 4.156556 GTGATGTGGCAGAGCAATTAAAGA 59.843 41.667 3.46 0.00 0.00 2.52
725 731 4.157289 AGTGATGTGGCAGAGCAATTAAAG 59.843 41.667 3.46 0.00 0.00 1.85
726 732 4.081406 AGTGATGTGGCAGAGCAATTAAA 58.919 39.130 3.46 0.00 0.00 1.52
727 733 3.689347 AGTGATGTGGCAGAGCAATTAA 58.311 40.909 3.46 0.00 0.00 1.40
728 734 3.354948 AGTGATGTGGCAGAGCAATTA 57.645 42.857 3.46 0.00 0.00 1.40
729 735 2.211250 AGTGATGTGGCAGAGCAATT 57.789 45.000 3.46 0.00 0.00 2.32
730 736 2.211250 AAGTGATGTGGCAGAGCAAT 57.789 45.000 3.46 0.00 0.00 3.56
731 737 1.985473 AAAGTGATGTGGCAGAGCAA 58.015 45.000 3.46 0.00 0.00 3.91
732 738 1.985473 AAAAGTGATGTGGCAGAGCA 58.015 45.000 0.00 0.00 0.00 4.26
749 755 5.646360 GCTAAGACTGCCACATAGGTAAAAA 59.354 40.000 0.00 0.00 40.61 1.94
750 756 5.183228 GCTAAGACTGCCACATAGGTAAAA 58.817 41.667 0.00 0.00 40.61 1.52
751 757 4.224147 TGCTAAGACTGCCACATAGGTAAA 59.776 41.667 0.00 0.00 40.61 2.01
752 758 3.772572 TGCTAAGACTGCCACATAGGTAA 59.227 43.478 0.00 0.00 40.61 2.85
753 759 3.132289 GTGCTAAGACTGCCACATAGGTA 59.868 47.826 0.00 0.00 40.61 3.08
754 760 2.093447 GTGCTAAGACTGCCACATAGGT 60.093 50.000 0.00 0.00 40.61 3.08
755 761 2.555199 GTGCTAAGACTGCCACATAGG 58.445 52.381 0.00 0.00 41.84 2.57
756 762 2.555199 GGTGCTAAGACTGCCACATAG 58.445 52.381 0.00 0.00 0.00 2.23
757 763 1.134818 CGGTGCTAAGACTGCCACATA 60.135 52.381 0.00 0.00 0.00 2.29
758 764 0.391661 CGGTGCTAAGACTGCCACAT 60.392 55.000 0.00 0.00 0.00 3.21
759 765 1.005037 CGGTGCTAAGACTGCCACA 60.005 57.895 0.00 0.00 0.00 4.17
760 766 1.741770 CCGGTGCTAAGACTGCCAC 60.742 63.158 0.00 0.00 0.00 5.01
761 767 0.901114 TACCGGTGCTAAGACTGCCA 60.901 55.000 19.93 0.00 0.00 4.92
762 768 0.459759 GTACCGGTGCTAAGACTGCC 60.460 60.000 19.93 0.00 0.00 4.85
763 769 0.245539 TGTACCGGTGCTAAGACTGC 59.754 55.000 23.67 0.00 0.00 4.40
764 770 1.544691 AGTGTACCGGTGCTAAGACTG 59.455 52.381 23.67 0.00 0.00 3.51
765 771 1.920610 AGTGTACCGGTGCTAAGACT 58.079 50.000 23.67 15.14 0.00 3.24
766 772 2.334838 CAAGTGTACCGGTGCTAAGAC 58.665 52.381 23.67 13.06 0.00 3.01
767 773 1.274167 CCAAGTGTACCGGTGCTAAGA 59.726 52.381 23.67 0.00 0.00 2.10
768 774 1.274167 TCCAAGTGTACCGGTGCTAAG 59.726 52.381 23.67 10.53 0.00 2.18
769 775 1.274167 CTCCAAGTGTACCGGTGCTAA 59.726 52.381 23.67 0.82 0.00 3.09
770 776 0.892755 CTCCAAGTGTACCGGTGCTA 59.107 55.000 23.67 7.45 0.00 3.49
771 777 1.671742 CTCCAAGTGTACCGGTGCT 59.328 57.895 23.67 12.76 0.00 4.40
772 778 2.033194 GCTCCAAGTGTACCGGTGC 61.033 63.158 19.93 18.21 32.73 5.01
773 779 0.949105 GTGCTCCAAGTGTACCGGTG 60.949 60.000 19.93 0.00 0.00 4.94
774 780 1.119574 AGTGCTCCAAGTGTACCGGT 61.120 55.000 13.98 13.98 0.00 5.28
775 781 0.670546 CAGTGCTCCAAGTGTACCGG 60.671 60.000 0.00 0.00 0.00 5.28
776 782 0.670546 CCAGTGCTCCAAGTGTACCG 60.671 60.000 0.00 0.00 0.00 4.02
777 783 0.685097 TCCAGTGCTCCAAGTGTACC 59.315 55.000 0.00 0.00 0.00 3.34
778 784 2.543777 TTCCAGTGCTCCAAGTGTAC 57.456 50.000 0.00 0.00 0.00 2.90
779 785 3.072330 TCATTTCCAGTGCTCCAAGTGTA 59.928 43.478 0.00 0.00 0.00 2.90
780 786 2.158623 TCATTTCCAGTGCTCCAAGTGT 60.159 45.455 0.00 0.00 0.00 3.55
781 787 2.227388 GTCATTTCCAGTGCTCCAAGTG 59.773 50.000 0.00 0.00 0.00 3.16
782 788 2.508526 GTCATTTCCAGTGCTCCAAGT 58.491 47.619 0.00 0.00 0.00 3.16
783 789 1.815003 GGTCATTTCCAGTGCTCCAAG 59.185 52.381 0.00 0.00 0.00 3.61
784 790 1.425066 AGGTCATTTCCAGTGCTCCAA 59.575 47.619 0.00 0.00 0.00 3.53
785 791 1.067295 AGGTCATTTCCAGTGCTCCA 58.933 50.000 0.00 0.00 0.00 3.86
786 792 3.350219 TTAGGTCATTTCCAGTGCTCC 57.650 47.619 0.00 0.00 0.00 4.70
787 793 7.283127 TGATTTATTAGGTCATTTCCAGTGCTC 59.717 37.037 0.00 0.00 0.00 4.26
788 794 7.118723 TGATTTATTAGGTCATTTCCAGTGCT 58.881 34.615 0.00 0.00 0.00 4.40
789 795 7.283127 TCTGATTTATTAGGTCATTTCCAGTGC 59.717 37.037 0.00 0.00 0.00 4.40
790 796 8.737168 TCTGATTTATTAGGTCATTTCCAGTG 57.263 34.615 0.00 0.00 0.00 3.66
791 797 9.753674 TTTCTGATTTATTAGGTCATTTCCAGT 57.246 29.630 0.00 0.00 0.00 4.00
800 806 9.413048 CGTCTAGGATTTCTGATTTATTAGGTC 57.587 37.037 0.00 0.00 0.00 3.85
801 807 8.925338 ACGTCTAGGATTTCTGATTTATTAGGT 58.075 33.333 0.00 0.00 0.00 3.08
815 821 7.767659 GGTGGATTTTAAGTACGTCTAGGATTT 59.232 37.037 0.00 0.00 0.00 2.17
829 835 4.138487 AGAGCTACGGGTGGATTTTAAG 57.862 45.455 0.00 0.00 0.00 1.85
840 846 2.605823 CGAGATTTGCTAGAGCTACGGG 60.606 54.545 2.72 0.00 42.66 5.28
860 866 3.073946 ACCACCCTCCCCATTTTATATCG 59.926 47.826 0.00 0.00 0.00 2.92
862 868 3.142028 CCACCACCCTCCCCATTTTATAT 59.858 47.826 0.00 0.00 0.00 0.86
869 875 2.941025 CACCACCACCCTCCCCAT 60.941 66.667 0.00 0.00 0.00 4.00
973 1953 1.999071 GAGCGATCGAGTGCCACTCT 61.999 60.000 21.57 4.76 42.92 3.24
1012 1995 1.611936 GGAGGAGAGGACACCTTTTGC 60.612 57.143 0.00 0.00 37.24 3.68
1157 2140 0.610174 AGAATCAGAAGCTGGTGCGA 59.390 50.000 0.00 0.00 45.42 5.10
1194 2178 1.519408 TGGTTAGAAAGCTGCCGAAC 58.481 50.000 0.00 0.00 0.00 3.95
1198 2182 4.051237 CAAAACTTGGTTAGAAAGCTGCC 58.949 43.478 0.00 0.00 0.00 4.85
1242 2226 1.545651 GGAGTCTGGACCCAAACCAAG 60.546 57.143 0.00 0.00 36.95 3.61
1388 2386 2.095718 GGAATTTGAACACAGAGACGGC 60.096 50.000 0.00 0.00 0.00 5.68
1395 2393 4.446385 CACTGCATTGGAATTTGAACACAG 59.554 41.667 0.00 0.00 0.00 3.66
1403 2401 0.247185 CGGCCACTGCATTGGAATTT 59.753 50.000 26.07 0.00 39.24 1.82
1607 2605 0.249073 CAGGCGTCGAGGAATGTAGG 60.249 60.000 9.75 0.00 0.00 3.18
1646 2644 2.040544 GCATGAGGAACCACGGGTG 61.041 63.158 0.00 0.00 35.34 4.61
1765 2763 2.052690 GCTGTAGAGGACGAGGCCA 61.053 63.158 5.01 0.00 0.00 5.36
2053 3057 3.246619 CTTGCTCAGAAAGTAGACCGTC 58.753 50.000 0.00 0.00 0.00 4.79
2455 3465 1.446792 CGAGCTCACGCAGACCATT 60.447 57.895 15.40 0.00 39.10 3.16
2480 3490 1.067425 GCACATGAAGCAGCCATTGAA 60.067 47.619 0.00 0.00 0.00 2.69
2485 3501 2.032376 TCGCACATGAAGCAGCCA 59.968 55.556 0.00 0.00 0.00 4.75
2508 3524 1.089920 CTCCTCCCATTCGTTGCTTG 58.910 55.000 0.00 0.00 0.00 4.01
2509 3525 0.678048 GCTCCTCCCATTCGTTGCTT 60.678 55.000 0.00 0.00 0.00 3.91
2618 3634 0.941542 AACACACACACGCATACACC 59.058 50.000 0.00 0.00 0.00 4.16
2659 3680 4.974399 ACAGCTCCTTAACTAAACAAGCT 58.026 39.130 0.00 0.00 39.07 3.74
2804 3835 6.604171 AGTATCAATGAAGCCCATGAATACA 58.396 36.000 15.89 0.00 36.69 2.29
2805 3836 8.621532 TTAGTATCAATGAAGCCCATGAATAC 57.378 34.615 0.00 10.53 35.64 1.89
2806 3837 8.659527 TCTTAGTATCAATGAAGCCCATGAATA 58.340 33.333 0.00 0.00 35.24 1.75
2807 3838 7.520798 TCTTAGTATCAATGAAGCCCATGAAT 58.479 34.615 0.00 0.00 35.24 2.57
2809 3840 6.499106 TCTTAGTATCAATGAAGCCCATGA 57.501 37.500 0.00 0.00 35.24 3.07
2810 3841 9.458727 AATATCTTAGTATCAATGAAGCCCATG 57.541 33.333 0.00 0.00 35.24 3.66
2812 3843 9.866655 AAAATATCTTAGTATCAATGAAGCCCA 57.133 29.630 0.00 0.00 0.00 5.36
2814 3845 9.617975 GCAAAATATCTTAGTATCAATGAAGCC 57.382 33.333 0.00 0.00 0.00 4.35
2881 3916 0.974010 AATCGTCTGGGAAGGGCGTA 60.974 55.000 0.00 0.00 0.00 4.42
2905 3941 2.515947 GATTTTTGTGCGCCGGCGTA 62.516 55.000 45.02 40.86 44.10 4.42
3282 4337 1.034838 GCGGAGAGAGAGAGAGGCAA 61.035 60.000 0.00 0.00 0.00 4.52
3286 4341 2.542907 GCGGCGGAGAGAGAGAGAG 61.543 68.421 9.78 0.00 0.00 3.20
3287 4342 2.515057 GCGGCGGAGAGAGAGAGA 60.515 66.667 9.78 0.00 0.00 3.10
3534 4604 2.478033 GCCGGCGAAGTAATTGGGG 61.478 63.158 12.58 0.00 0.00 4.96
3570 4640 1.513158 CTCCTCGGTCAGCAACGAT 59.487 57.895 0.00 0.00 38.56 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.