Multiple sequence alignment - TraesCS5D01G106100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G106100 chr5D 100.000 3094 0 0 1 3094 119744093 119747186 0 5714
1 TraesCS5D01G106100 chr5D 98.764 890 10 1 2206 3094 119754511 119755400 0 1581
2 TraesCS5D01G106100 chr5D 97.987 894 15 3 2204 3094 367649800 367650693 0 1548
3 TraesCS5D01G106100 chr4B 95.738 1877 76 4 334 2209 634955226 634953353 0 3020
4 TraesCS5D01G106100 chr4B 95.382 1884 81 5 329 2209 634473375 634475255 0 2992
5 TraesCS5D01G106100 chr3A 94.675 1108 54 4 1103 2209 621338933 621337830 0 1714
6 TraesCS5D01G106100 chr7D 98.309 887 14 1 2209 3094 89174999 89174113 0 1554
7 TraesCS5D01G106100 chr4D 97.680 905 18 3 2192 3094 490117023 490116120 0 1552
8 TraesCS5D01G106100 chr4D 98.088 889 15 2 2208 3094 479660925 479660037 0 1546
9 TraesCS5D01G106100 chr2D 98.094 892 16 1 2204 3094 194685385 194686276 0 1552
10 TraesCS5D01G106100 chr2D 98.086 888 16 1 2208 3094 396463190 396462303 0 1544
11 TraesCS5D01G106100 chr2D 96.594 411 14 0 1799 2209 54195203 54194793 0 682
12 TraesCS5D01G106100 chr3D 98.090 890 16 1 2206 3094 522105759 522106648 0 1548
13 TraesCS5D01G106100 chr6D 98.086 888 15 2 2209 3094 20038342 20039229 0 1544
14 TraesCS5D01G106100 chr4A 96.145 908 35 0 1302 2209 429532539 429531632 0 1483


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G106100 chr5D 119744093 119747186 3093 False 5714 5714 100.000 1 3094 1 chr5D.!!$F1 3093
1 TraesCS5D01G106100 chr5D 119754511 119755400 889 False 1581 1581 98.764 2206 3094 1 chr5D.!!$F2 888
2 TraesCS5D01G106100 chr5D 367649800 367650693 893 False 1548 1548 97.987 2204 3094 1 chr5D.!!$F3 890
3 TraesCS5D01G106100 chr4B 634953353 634955226 1873 True 3020 3020 95.738 334 2209 1 chr4B.!!$R1 1875
4 TraesCS5D01G106100 chr4B 634473375 634475255 1880 False 2992 2992 95.382 329 2209 1 chr4B.!!$F1 1880
5 TraesCS5D01G106100 chr3A 621337830 621338933 1103 True 1714 1714 94.675 1103 2209 1 chr3A.!!$R1 1106
6 TraesCS5D01G106100 chr7D 89174113 89174999 886 True 1554 1554 98.309 2209 3094 1 chr7D.!!$R1 885
7 TraesCS5D01G106100 chr4D 490116120 490117023 903 True 1552 1552 97.680 2192 3094 1 chr4D.!!$R2 902
8 TraesCS5D01G106100 chr4D 479660037 479660925 888 True 1546 1546 98.088 2208 3094 1 chr4D.!!$R1 886
9 TraesCS5D01G106100 chr2D 194685385 194686276 891 False 1552 1552 98.094 2204 3094 1 chr2D.!!$F1 890
10 TraesCS5D01G106100 chr2D 396462303 396463190 887 True 1544 1544 98.086 2208 3094 1 chr2D.!!$R2 886
11 TraesCS5D01G106100 chr3D 522105759 522106648 889 False 1548 1548 98.090 2206 3094 1 chr3D.!!$F1 888
12 TraesCS5D01G106100 chr6D 20038342 20039229 887 False 1544 1544 98.086 2209 3094 1 chr6D.!!$F1 885
13 TraesCS5D01G106100 chr4A 429531632 429532539 907 True 1483 1483 96.145 1302 2209 1 chr4A.!!$R1 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.033011 ACATAGACCGAGCTCAGGGT 60.033 55.0 22.76 18.39 39.83 4.34 F
1230 1231 0.323629 TTCTTGGAGTTAGGCCACCG 59.676 55.0 5.01 0.00 34.56 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1331 1332 1.447317 CCGGGCATAGCGCTCAAAAT 61.447 55.0 16.34 0.0 43.64 1.82 R
2951 2956 0.615544 CCCATGTTGGCTCCCACATT 60.616 55.0 3.16 0.0 35.79 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.780595 GCAATATGGTGGTCGCAGT 58.219 52.632 0.00 0.00 0.00 4.40
19 20 1.094785 GCAATATGGTGGTCGCAGTT 58.905 50.000 0.00 0.00 0.00 3.16
20 21 2.285083 GCAATATGGTGGTCGCAGTTA 58.715 47.619 0.00 0.00 0.00 2.24
21 22 2.878406 GCAATATGGTGGTCGCAGTTAT 59.122 45.455 0.00 0.00 0.00 1.89
22 23 3.303990 GCAATATGGTGGTCGCAGTTATG 60.304 47.826 0.00 0.00 0.00 1.90
23 24 3.838244 ATATGGTGGTCGCAGTTATGT 57.162 42.857 0.00 0.00 0.00 2.29
24 25 2.489938 ATGGTGGTCGCAGTTATGTT 57.510 45.000 0.00 0.00 0.00 2.71
25 26 1.518325 TGGTGGTCGCAGTTATGTTG 58.482 50.000 0.00 0.00 0.00 3.33
26 27 1.202710 TGGTGGTCGCAGTTATGTTGT 60.203 47.619 0.00 0.00 0.00 3.32
27 28 1.196808 GGTGGTCGCAGTTATGTTGTG 59.803 52.381 0.00 0.00 0.00 3.33
28 29 1.196808 GTGGTCGCAGTTATGTTGTGG 59.803 52.381 0.00 0.00 0.00 4.17
29 30 1.202710 TGGTCGCAGTTATGTTGTGGT 60.203 47.619 0.00 0.00 0.00 4.16
30 31 1.463444 GGTCGCAGTTATGTTGTGGTC 59.537 52.381 0.00 0.00 0.00 4.02
31 32 1.463444 GTCGCAGTTATGTTGTGGTCC 59.537 52.381 0.00 0.00 0.00 4.46
32 33 1.346395 TCGCAGTTATGTTGTGGTCCT 59.654 47.619 0.00 0.00 0.00 3.85
33 34 1.732259 CGCAGTTATGTTGTGGTCCTC 59.268 52.381 0.00 0.00 0.00 3.71
34 35 2.778299 GCAGTTATGTTGTGGTCCTCA 58.222 47.619 0.00 0.00 0.00 3.86
35 36 2.484264 GCAGTTATGTTGTGGTCCTCAC 59.516 50.000 0.00 0.00 46.23 3.51
36 37 3.074412 CAGTTATGTTGTGGTCCTCACC 58.926 50.000 0.00 0.00 45.48 4.02
37 38 2.039879 AGTTATGTTGTGGTCCTCACCC 59.960 50.000 0.00 0.00 45.48 4.61
38 39 0.988832 TATGTTGTGGTCCTCACCCC 59.011 55.000 0.00 0.00 45.48 4.95
39 40 0.772124 ATGTTGTGGTCCTCACCCCT 60.772 55.000 0.00 0.00 45.48 4.79
40 41 1.375326 GTTGTGGTCCTCACCCCTC 59.625 63.158 0.00 0.00 45.48 4.30
41 42 1.846124 TTGTGGTCCTCACCCCTCC 60.846 63.158 0.00 0.00 45.48 4.30
42 43 3.009714 GTGGTCCTCACCCCTCCC 61.010 72.222 0.00 0.00 42.99 4.30
43 44 3.208592 TGGTCCTCACCCCTCCCT 61.209 66.667 0.00 0.00 42.99 4.20
44 45 2.365768 GGTCCTCACCCCTCCCTC 60.366 72.222 0.00 0.00 36.54 4.30
45 46 2.760385 GTCCTCACCCCTCCCTCG 60.760 72.222 0.00 0.00 0.00 4.63
46 47 3.273654 TCCTCACCCCTCCCTCGT 61.274 66.667 0.00 0.00 0.00 4.18
47 48 3.077556 CCTCACCCCTCCCTCGTG 61.078 72.222 0.00 0.00 0.00 4.35
48 49 3.775654 CTCACCCCTCCCTCGTGC 61.776 72.222 0.00 0.00 0.00 5.34
49 50 4.316823 TCACCCCTCCCTCGTGCT 62.317 66.667 0.00 0.00 0.00 4.40
50 51 3.775654 CACCCCTCCCTCGTGCTC 61.776 72.222 0.00 0.00 0.00 4.26
51 52 4.316823 ACCCCTCCCTCGTGCTCA 62.317 66.667 0.00 0.00 0.00 4.26
52 53 2.765807 CCCCTCCCTCGTGCTCAT 60.766 66.667 0.00 0.00 0.00 2.90
53 54 2.503061 CCCTCCCTCGTGCTCATG 59.497 66.667 0.00 0.00 0.00 3.07
54 55 2.202987 CCTCCCTCGTGCTCATGC 60.203 66.667 0.00 0.00 40.20 4.06
55 56 2.202987 CTCCCTCGTGCTCATGCC 60.203 66.667 0.00 0.00 38.71 4.40
56 57 3.002583 TCCCTCGTGCTCATGCCA 61.003 61.111 0.00 0.00 38.71 4.92
57 58 2.046023 CCCTCGTGCTCATGCCAA 60.046 61.111 0.00 0.00 38.71 4.52
58 59 1.675310 CCCTCGTGCTCATGCCAAA 60.675 57.895 0.00 0.00 38.71 3.28
59 60 1.033746 CCCTCGTGCTCATGCCAAAT 61.034 55.000 0.00 0.00 38.71 2.32
60 61 0.099968 CCTCGTGCTCATGCCAAATG 59.900 55.000 0.00 0.00 38.71 2.32
61 62 0.524816 CTCGTGCTCATGCCAAATGC 60.525 55.000 0.00 0.00 38.71 3.56
62 63 1.517694 CGTGCTCATGCCAAATGCC 60.518 57.895 0.00 0.00 40.16 4.40
63 64 1.517694 GTGCTCATGCCAAATGCCG 60.518 57.895 0.00 0.00 40.16 5.69
64 65 1.978080 TGCTCATGCCAAATGCCGT 60.978 52.632 0.00 0.00 40.16 5.68
65 66 1.216178 GCTCATGCCAAATGCCGTT 59.784 52.632 0.00 0.00 40.16 4.44
66 67 1.079875 GCTCATGCCAAATGCCGTTG 61.080 55.000 0.00 0.00 40.16 4.10
67 68 1.079875 CTCATGCCAAATGCCGTTGC 61.080 55.000 0.00 0.00 40.16 4.17
76 77 4.223800 TGCCGTTGCAGATCCATC 57.776 55.556 0.00 0.00 44.23 3.51
77 78 1.603842 TGCCGTTGCAGATCCATCT 59.396 52.632 0.00 0.00 44.23 2.90
78 79 0.035152 TGCCGTTGCAGATCCATCTT 60.035 50.000 0.00 0.00 44.23 2.40
79 80 0.659957 GCCGTTGCAGATCCATCTTC 59.340 55.000 0.00 0.00 34.22 2.87
80 81 1.303309 CCGTTGCAGATCCATCTTCC 58.697 55.000 0.00 0.00 34.22 3.46
81 82 1.407299 CCGTTGCAGATCCATCTTCCA 60.407 52.381 0.00 0.00 34.22 3.53
82 83 2.569059 CGTTGCAGATCCATCTTCCAT 58.431 47.619 0.00 0.00 34.22 3.41
83 84 2.289820 CGTTGCAGATCCATCTTCCATG 59.710 50.000 0.00 0.00 34.22 3.66
84 85 1.977056 TGCAGATCCATCTTCCATGC 58.023 50.000 0.00 0.00 34.22 4.06
85 86 1.493446 TGCAGATCCATCTTCCATGCT 59.507 47.619 0.00 0.00 34.22 3.79
86 87 2.152830 GCAGATCCATCTTCCATGCTC 58.847 52.381 0.00 0.00 34.22 4.26
87 88 2.224572 GCAGATCCATCTTCCATGCTCT 60.225 50.000 0.00 0.00 34.22 4.09
88 89 3.666274 CAGATCCATCTTCCATGCTCTC 58.334 50.000 0.00 0.00 34.22 3.20
89 90 3.071167 CAGATCCATCTTCCATGCTCTCA 59.929 47.826 0.00 0.00 34.22 3.27
90 91 3.911260 AGATCCATCTTCCATGCTCTCAT 59.089 43.478 0.00 0.00 31.97 2.90
91 92 5.046520 CAGATCCATCTTCCATGCTCTCATA 60.047 44.000 0.00 0.00 34.22 2.15
92 93 5.727279 AGATCCATCTTCCATGCTCTCATAT 59.273 40.000 0.00 0.00 31.97 1.78
93 94 5.161943 TCCATCTTCCATGCTCTCATATG 57.838 43.478 0.00 0.00 0.00 1.78
94 95 4.842380 TCCATCTTCCATGCTCTCATATGA 59.158 41.667 5.07 5.07 0.00 2.15
95 96 5.487845 TCCATCTTCCATGCTCTCATATGAT 59.512 40.000 5.72 0.00 0.00 2.45
96 97 6.670902 TCCATCTTCCATGCTCTCATATGATA 59.329 38.462 5.72 0.00 0.00 2.15
97 98 7.181485 TCCATCTTCCATGCTCTCATATGATAA 59.819 37.037 5.72 0.00 0.00 1.75
98 99 7.280428 CCATCTTCCATGCTCTCATATGATAAC 59.720 40.741 5.72 0.00 0.00 1.89
99 100 7.307131 TCTTCCATGCTCTCATATGATAACA 57.693 36.000 5.72 5.10 0.00 2.41
100 101 7.384477 TCTTCCATGCTCTCATATGATAACAG 58.616 38.462 5.72 1.75 0.00 3.16
101 102 5.485620 TCCATGCTCTCATATGATAACAGC 58.514 41.667 5.72 11.54 0.00 4.40
102 103 5.012354 TCCATGCTCTCATATGATAACAGCA 59.988 40.000 21.60 21.60 0.00 4.41
103 104 5.880887 CCATGCTCTCATATGATAACAGCAT 59.119 40.000 23.19 23.19 40.51 3.79
104 105 6.776094 CATGCTCTCATATGATAACAGCATG 58.224 40.000 30.47 30.47 46.68 4.06
118 119 4.131376 CATGTCATGCTCGGGGAC 57.869 61.111 0.00 0.00 0.00 4.46
119 120 1.524002 CATGTCATGCTCGGGGACT 59.476 57.895 0.00 0.00 32.84 3.85
120 121 0.107508 CATGTCATGCTCGGGGACTT 60.108 55.000 0.00 0.00 32.84 3.01
121 122 0.179000 ATGTCATGCTCGGGGACTTC 59.821 55.000 0.00 0.00 32.84 3.01
122 123 0.904865 TGTCATGCTCGGGGACTTCT 60.905 55.000 0.00 0.00 32.84 2.85
123 124 1.112113 GTCATGCTCGGGGACTTCTA 58.888 55.000 0.00 0.00 0.00 2.10
124 125 1.067821 GTCATGCTCGGGGACTTCTAG 59.932 57.143 0.00 0.00 0.00 2.43
125 126 0.249657 CATGCTCGGGGACTTCTAGC 60.250 60.000 0.00 0.00 0.00 3.42
126 127 0.687757 ATGCTCGGGGACTTCTAGCA 60.688 55.000 0.00 0.00 46.30 3.49
127 128 0.902984 TGCTCGGGGACTTCTAGCAA 60.903 55.000 0.00 0.00 40.05 3.91
128 129 0.179097 GCTCGGGGACTTCTAGCAAG 60.179 60.000 0.00 0.00 33.38 4.01
129 130 0.461961 CTCGGGGACTTCTAGCAAGG 59.538 60.000 6.81 0.00 0.00 3.61
130 131 0.040646 TCGGGGACTTCTAGCAAGGA 59.959 55.000 6.81 0.00 0.00 3.36
131 132 0.461961 CGGGGACTTCTAGCAAGGAG 59.538 60.000 6.81 0.00 34.07 3.69
132 133 0.179234 GGGGACTTCTAGCAAGGAGC 59.821 60.000 6.81 0.00 46.19 4.70
141 142 4.683432 GCAAGGAGCTCGACTTGT 57.317 55.556 24.65 0.45 44.45 3.16
142 143 2.919971 GCAAGGAGCTCGACTTGTT 58.080 52.632 24.65 4.93 44.45 2.83
143 144 1.230324 GCAAGGAGCTCGACTTGTTT 58.770 50.000 24.65 4.36 44.45 2.83
144 145 1.069636 GCAAGGAGCTCGACTTGTTTG 60.070 52.381 24.65 14.09 44.45 2.93
145 146 2.213499 CAAGGAGCTCGACTTGTTTGT 58.787 47.619 19.14 0.00 39.30 2.83
146 147 2.156343 AGGAGCTCGACTTGTTTGTC 57.844 50.000 7.83 0.00 0.00 3.18
147 148 1.412710 AGGAGCTCGACTTGTTTGTCA 59.587 47.619 7.83 0.00 36.82 3.58
148 149 1.527311 GGAGCTCGACTTGTTTGTCAC 59.473 52.381 7.83 0.00 36.82 3.67
149 150 1.527311 GAGCTCGACTTGTTTGTCACC 59.473 52.381 0.00 0.00 36.82 4.02
150 151 0.586802 GCTCGACTTGTTTGTCACCC 59.413 55.000 0.00 0.00 36.82 4.61
151 152 1.810412 GCTCGACTTGTTTGTCACCCT 60.810 52.381 0.00 0.00 36.82 4.34
152 153 2.561569 CTCGACTTGTTTGTCACCCTT 58.438 47.619 0.00 0.00 36.82 3.95
153 154 2.544267 CTCGACTTGTTTGTCACCCTTC 59.456 50.000 0.00 0.00 36.82 3.46
154 155 2.169769 TCGACTTGTTTGTCACCCTTCT 59.830 45.455 0.00 0.00 36.82 2.85
155 156 3.385433 TCGACTTGTTTGTCACCCTTCTA 59.615 43.478 0.00 0.00 36.82 2.10
156 157 4.039973 TCGACTTGTTTGTCACCCTTCTAT 59.960 41.667 0.00 0.00 36.82 1.98
157 158 4.389077 CGACTTGTTTGTCACCCTTCTATC 59.611 45.833 0.00 0.00 36.82 2.08
158 159 5.304686 ACTTGTTTGTCACCCTTCTATCA 57.695 39.130 0.00 0.00 0.00 2.15
159 160 5.880901 ACTTGTTTGTCACCCTTCTATCAT 58.119 37.500 0.00 0.00 0.00 2.45
160 161 7.016153 ACTTGTTTGTCACCCTTCTATCATA 57.984 36.000 0.00 0.00 0.00 2.15
161 162 7.633789 ACTTGTTTGTCACCCTTCTATCATAT 58.366 34.615 0.00 0.00 0.00 1.78
162 163 7.554118 ACTTGTTTGTCACCCTTCTATCATATG 59.446 37.037 0.00 0.00 0.00 1.78
163 164 7.194112 TGTTTGTCACCCTTCTATCATATGA 57.806 36.000 8.10 8.10 0.00 2.15
164 165 7.275183 TGTTTGTCACCCTTCTATCATATGAG 58.725 38.462 11.78 0.00 0.00 2.90
165 166 7.125659 TGTTTGTCACCCTTCTATCATATGAGA 59.874 37.037 11.78 5.65 0.00 3.27
166 167 6.907853 TGTCACCCTTCTATCATATGAGAG 57.092 41.667 19.30 19.30 34.87 3.20
167 168 5.244851 TGTCACCCTTCTATCATATGAGAGC 59.755 44.000 20.32 6.47 33.66 4.09
168 169 4.774726 TCACCCTTCTATCATATGAGAGCC 59.225 45.833 20.32 0.00 33.66 4.70
169 170 3.766591 ACCCTTCTATCATATGAGAGCCG 59.233 47.826 20.32 13.49 33.66 5.52
170 171 3.766591 CCCTTCTATCATATGAGAGCCGT 59.233 47.826 20.32 1.23 33.66 5.68
171 172 4.221703 CCCTTCTATCATATGAGAGCCGTT 59.778 45.833 20.32 0.53 33.66 4.44
172 173 5.406649 CCTTCTATCATATGAGAGCCGTTC 58.593 45.833 20.32 0.00 33.66 3.95
173 174 4.686839 TCTATCATATGAGAGCCGTTCG 57.313 45.455 20.32 0.00 33.66 3.95
174 175 2.732412 ATCATATGAGAGCCGTTCGG 57.268 50.000 11.78 6.90 0.00 4.30
175 176 1.687563 TCATATGAGAGCCGTTCGGA 58.312 50.000 15.69 0.00 0.00 4.55
176 177 1.609072 TCATATGAGAGCCGTTCGGAG 59.391 52.381 15.69 0.00 0.00 4.63
177 178 0.315568 ATATGAGAGCCGTTCGGAGC 59.684 55.000 15.69 5.63 0.00 4.70
178 179 1.035385 TATGAGAGCCGTTCGGAGCA 61.035 55.000 15.69 6.80 0.00 4.26
179 180 2.507324 GAGAGCCGTTCGGAGCAC 60.507 66.667 15.69 1.02 0.00 4.40
180 181 3.282745 GAGAGCCGTTCGGAGCACA 62.283 63.158 15.69 0.00 0.00 4.57
181 182 2.125512 GAGCCGTTCGGAGCACAT 60.126 61.111 15.69 0.00 0.00 3.21
182 183 2.434884 AGCCGTTCGGAGCACATG 60.435 61.111 15.69 0.00 0.00 3.21
183 184 3.499737 GCCGTTCGGAGCACATGG 61.500 66.667 15.69 0.00 0.00 3.66
184 185 2.819595 CCGTTCGGAGCACATGGG 60.820 66.667 5.19 0.00 0.00 4.00
185 186 3.499737 CGTTCGGAGCACATGGGC 61.500 66.667 13.49 13.49 0.00 5.36
187 188 2.046023 TTCGGAGCACATGGGCTG 60.046 61.111 30.99 14.80 45.99 4.85
188 189 3.626996 TTCGGAGCACATGGGCTGG 62.627 63.158 30.99 19.23 45.99 4.85
189 190 4.415150 CGGAGCACATGGGCTGGT 62.415 66.667 30.99 6.71 45.99 4.00
190 191 2.998097 GGAGCACATGGGCTGGTA 59.002 61.111 30.99 0.00 45.99 3.25
191 192 1.153086 GGAGCACATGGGCTGGTAG 60.153 63.158 30.99 0.00 45.99 3.18
192 193 1.626356 GGAGCACATGGGCTGGTAGA 61.626 60.000 30.99 0.00 45.99 2.59
193 194 0.471617 GAGCACATGGGCTGGTAGAT 59.528 55.000 30.99 0.00 45.99 1.98
194 195 0.921896 AGCACATGGGCTGGTAGATT 59.078 50.000 24.73 0.00 43.89 2.40
195 196 1.285962 AGCACATGGGCTGGTAGATTT 59.714 47.619 24.73 0.00 43.89 2.17
196 197 1.406539 GCACATGGGCTGGTAGATTTG 59.593 52.381 14.19 0.00 0.00 2.32
197 198 2.945440 GCACATGGGCTGGTAGATTTGA 60.945 50.000 14.19 0.00 0.00 2.69
198 199 2.947652 CACATGGGCTGGTAGATTTGAG 59.052 50.000 0.00 0.00 0.00 3.02
199 200 1.952296 CATGGGCTGGTAGATTTGAGC 59.048 52.381 0.00 0.00 0.00 4.26
201 202 3.102090 GGCTGGTAGATTTGAGCCC 57.898 57.895 0.00 0.00 44.54 5.19
202 203 0.548510 GGCTGGTAGATTTGAGCCCT 59.451 55.000 0.00 0.00 44.54 5.19
203 204 1.768870 GGCTGGTAGATTTGAGCCCTA 59.231 52.381 0.00 0.00 44.54 3.53
204 205 2.485657 GGCTGGTAGATTTGAGCCCTAC 60.486 54.545 0.00 0.00 44.54 3.18
205 206 2.436173 GCTGGTAGATTTGAGCCCTACT 59.564 50.000 0.00 0.00 34.69 2.57
206 207 3.118223 GCTGGTAGATTTGAGCCCTACTT 60.118 47.826 0.00 0.00 34.69 2.24
207 208 4.446371 CTGGTAGATTTGAGCCCTACTTG 58.554 47.826 0.00 0.00 34.69 3.16
208 209 3.199946 TGGTAGATTTGAGCCCTACTTGG 59.800 47.826 0.00 0.00 34.69 3.61
209 210 3.454812 GGTAGATTTGAGCCCTACTTGGA 59.545 47.826 0.00 0.00 38.35 3.53
210 211 3.636153 AGATTTGAGCCCTACTTGGAC 57.364 47.619 0.00 0.00 38.35 4.02
211 212 2.912956 AGATTTGAGCCCTACTTGGACA 59.087 45.455 0.00 0.00 38.35 4.02
212 213 3.525199 AGATTTGAGCCCTACTTGGACAT 59.475 43.478 0.00 0.00 38.35 3.06
213 214 2.787473 TTGAGCCCTACTTGGACATG 57.213 50.000 0.00 0.00 38.35 3.21
214 215 0.911769 TGAGCCCTACTTGGACATGG 59.088 55.000 0.00 0.00 38.35 3.66
215 216 0.464554 GAGCCCTACTTGGACATGGC 60.465 60.000 0.00 0.00 38.35 4.40
216 217 1.207488 AGCCCTACTTGGACATGGCA 61.207 55.000 0.00 0.00 41.33 4.92
217 218 1.032114 GCCCTACTTGGACATGGCAC 61.032 60.000 0.00 0.00 38.73 5.01
218 219 0.327924 CCCTACTTGGACATGGCACA 59.672 55.000 0.00 0.00 40.53 4.57
219 220 1.679944 CCCTACTTGGACATGGCACAG 60.680 57.143 0.00 0.00 39.65 3.66
220 221 1.003580 CCTACTTGGACATGGCACAGT 59.996 52.381 0.00 3.74 39.65 3.55
221 222 3.195293 CCTACTTGGACATGGCACAGTG 61.195 54.545 11.34 0.00 39.65 3.66
232 233 2.714259 GCACAGTGGCCAAAGTACA 58.286 52.632 7.24 0.00 0.00 2.90
233 234 1.028905 GCACAGTGGCCAAAGTACAA 58.971 50.000 7.24 0.00 0.00 2.41
234 235 1.269051 GCACAGTGGCCAAAGTACAAC 60.269 52.381 7.24 0.00 0.00 3.32
235 236 1.002900 CACAGTGGCCAAAGTACAACG 60.003 52.381 7.24 0.00 0.00 4.10
236 237 0.591170 CAGTGGCCAAAGTACAACGG 59.409 55.000 7.24 0.00 0.00 4.44
237 238 0.181824 AGTGGCCAAAGTACAACGGT 59.818 50.000 7.24 0.00 0.00 4.83
238 239 0.589708 GTGGCCAAAGTACAACGGTC 59.410 55.000 7.24 0.00 0.00 4.79
239 240 0.535553 TGGCCAAAGTACAACGGTCC 60.536 55.000 0.61 0.00 0.00 4.46
240 241 0.535553 GGCCAAAGTACAACGGTCCA 60.536 55.000 0.00 0.00 0.00 4.02
241 242 0.872388 GCCAAAGTACAACGGTCCAG 59.128 55.000 0.00 0.00 0.00 3.86
242 243 1.812708 GCCAAAGTACAACGGTCCAGT 60.813 52.381 0.00 0.00 0.00 4.00
243 244 2.567985 CCAAAGTACAACGGTCCAGTT 58.432 47.619 0.00 0.00 34.15 3.16
244 245 2.946990 CCAAAGTACAACGGTCCAGTTT 59.053 45.455 0.00 0.00 30.96 2.66
245 246 4.128643 CCAAAGTACAACGGTCCAGTTTA 58.871 43.478 0.00 0.00 30.96 2.01
246 247 4.758165 CCAAAGTACAACGGTCCAGTTTAT 59.242 41.667 0.00 0.00 30.96 1.40
247 248 5.239963 CCAAAGTACAACGGTCCAGTTTATT 59.760 40.000 0.00 0.00 30.96 1.40
248 249 6.238814 CCAAAGTACAACGGTCCAGTTTATTT 60.239 38.462 0.00 0.00 30.96 1.40
249 250 7.041235 CCAAAGTACAACGGTCCAGTTTATTTA 60.041 37.037 0.00 0.00 30.96 1.40
250 251 7.425577 AAGTACAACGGTCCAGTTTATTTAC 57.574 36.000 0.00 0.00 30.96 2.01
251 252 5.934043 AGTACAACGGTCCAGTTTATTTACC 59.066 40.000 0.00 0.00 30.96 2.85
258 259 4.753610 GGTCCAGTTTATTTACCGGATAGC 59.246 45.833 9.46 0.00 27.92 2.97
259 260 4.446719 GTCCAGTTTATTTACCGGATAGCG 59.553 45.833 9.46 0.00 27.92 4.26
260 261 4.341806 TCCAGTTTATTTACCGGATAGCGA 59.658 41.667 9.46 0.00 0.00 4.93
261 262 5.051816 CCAGTTTATTTACCGGATAGCGAA 58.948 41.667 9.46 0.00 0.00 4.70
262 263 5.050567 CCAGTTTATTTACCGGATAGCGAAC 60.051 44.000 9.46 6.41 0.00 3.95
263 264 5.751990 CAGTTTATTTACCGGATAGCGAACT 59.248 40.000 9.46 8.75 0.00 3.01
264 265 6.919662 CAGTTTATTTACCGGATAGCGAACTA 59.080 38.462 9.46 0.00 0.00 2.24
265 266 7.436080 CAGTTTATTTACCGGATAGCGAACTAA 59.564 37.037 9.46 0.00 30.45 2.24
266 267 8.146412 AGTTTATTTACCGGATAGCGAACTAAT 58.854 33.333 9.46 0.00 30.45 1.73
267 268 7.878477 TTATTTACCGGATAGCGAACTAATG 57.122 36.000 9.46 0.00 30.45 1.90
268 269 2.814280 ACCGGATAGCGAACTAATGG 57.186 50.000 9.46 0.00 30.45 3.16
269 270 2.037144 ACCGGATAGCGAACTAATGGT 58.963 47.619 9.46 0.00 30.45 3.55
270 271 2.433239 ACCGGATAGCGAACTAATGGTT 59.567 45.455 9.46 0.00 41.40 3.67
271 272 3.638160 ACCGGATAGCGAACTAATGGTTA 59.362 43.478 9.46 0.00 38.41 2.85
272 273 4.099881 ACCGGATAGCGAACTAATGGTTAA 59.900 41.667 9.46 0.00 38.41 2.01
273 274 4.684703 CCGGATAGCGAACTAATGGTTAAG 59.315 45.833 0.00 0.00 38.41 1.85
274 275 5.508489 CCGGATAGCGAACTAATGGTTAAGA 60.508 44.000 0.00 0.00 38.41 2.10
275 276 5.401674 CGGATAGCGAACTAATGGTTAAGAC 59.598 44.000 0.00 0.00 38.41 3.01
276 277 6.278363 GGATAGCGAACTAATGGTTAAGACA 58.722 40.000 0.00 0.00 38.41 3.41
277 278 6.759827 GGATAGCGAACTAATGGTTAAGACAA 59.240 38.462 0.00 0.00 38.41 3.18
278 279 7.279313 GGATAGCGAACTAATGGTTAAGACAAA 59.721 37.037 0.00 0.00 38.41 2.83
279 280 6.870971 AGCGAACTAATGGTTAAGACAAAA 57.129 33.333 0.00 0.00 38.41 2.44
280 281 6.899114 AGCGAACTAATGGTTAAGACAAAAG 58.101 36.000 0.00 0.00 38.41 2.27
281 282 6.072673 AGCGAACTAATGGTTAAGACAAAAGG 60.073 38.462 0.00 0.00 38.41 3.11
282 283 6.293790 GCGAACTAATGGTTAAGACAAAAGGT 60.294 38.462 0.00 0.00 38.41 3.50
283 284 7.295930 CGAACTAATGGTTAAGACAAAAGGTC 58.704 38.462 0.00 0.00 41.61 3.85
284 285 7.198306 AACTAATGGTTAAGACAAAAGGTCG 57.802 36.000 0.00 0.00 43.00 4.79
285 286 6.993902 AACTAATGGTTAAGACAAAAGGTCGA 59.006 34.615 0.00 0.00 43.00 4.20
286 287 7.041576 AACTAATGGTTAAGACAAAAGGTCGAC 60.042 37.037 7.13 7.13 43.00 4.20
290 291 4.036977 GACAAAAGGTCGACGCCA 57.963 55.556 9.92 0.00 36.65 5.69
291 292 1.860078 GACAAAAGGTCGACGCCAG 59.140 57.895 9.92 0.82 36.65 4.85
292 293 0.599204 GACAAAAGGTCGACGCCAGA 60.599 55.000 9.92 0.00 36.65 3.86
293 294 0.878961 ACAAAAGGTCGACGCCAGAC 60.879 55.000 9.92 0.00 37.86 3.51
305 306 3.606886 GCCAGACGAAGAGGTTCAA 57.393 52.632 0.00 0.00 32.36 2.69
306 307 1.433534 GCCAGACGAAGAGGTTCAAG 58.566 55.000 0.00 0.00 32.36 3.02
307 308 1.000955 GCCAGACGAAGAGGTTCAAGA 59.999 52.381 0.00 0.00 32.36 3.02
308 309 2.354203 GCCAGACGAAGAGGTTCAAGAT 60.354 50.000 0.00 0.00 32.36 2.40
309 310 3.257393 CCAGACGAAGAGGTTCAAGATG 58.743 50.000 0.00 0.00 32.36 2.90
310 311 3.257393 CAGACGAAGAGGTTCAAGATGG 58.743 50.000 0.00 0.00 32.36 3.51
311 312 3.056536 CAGACGAAGAGGTTCAAGATGGA 60.057 47.826 0.00 0.00 32.36 3.41
312 313 3.056465 AGACGAAGAGGTTCAAGATGGAC 60.056 47.826 0.00 0.00 32.36 4.02
313 314 2.632996 ACGAAGAGGTTCAAGATGGACA 59.367 45.455 0.00 0.00 32.36 4.02
314 315 3.261897 ACGAAGAGGTTCAAGATGGACAT 59.738 43.478 0.00 0.00 32.36 3.06
315 316 4.466370 ACGAAGAGGTTCAAGATGGACATA 59.534 41.667 0.00 0.00 32.36 2.29
316 317 5.046529 CGAAGAGGTTCAAGATGGACATAG 58.953 45.833 0.00 0.00 32.36 2.23
317 318 5.163509 CGAAGAGGTTCAAGATGGACATAGA 60.164 44.000 0.00 0.00 32.36 1.98
318 319 5.606348 AGAGGTTCAAGATGGACATAGAC 57.394 43.478 0.00 0.00 0.00 2.59
319 320 4.407296 AGAGGTTCAAGATGGACATAGACC 59.593 45.833 0.00 0.00 0.00 3.85
320 321 3.133003 AGGTTCAAGATGGACATAGACCG 59.867 47.826 0.00 0.00 0.00 4.79
321 322 3.132289 GGTTCAAGATGGACATAGACCGA 59.868 47.826 0.00 0.00 0.00 4.69
322 323 4.363999 GTTCAAGATGGACATAGACCGAG 58.636 47.826 0.00 0.00 0.00 4.63
323 324 2.362397 TCAAGATGGACATAGACCGAGC 59.638 50.000 0.00 0.00 0.00 5.03
324 325 2.363680 CAAGATGGACATAGACCGAGCT 59.636 50.000 0.00 0.00 0.00 4.09
325 326 2.235016 AGATGGACATAGACCGAGCTC 58.765 52.381 2.73 2.73 0.00 4.09
326 327 1.957177 GATGGACATAGACCGAGCTCA 59.043 52.381 15.40 0.00 0.00 4.26
327 328 1.393603 TGGACATAGACCGAGCTCAG 58.606 55.000 15.40 4.66 0.00 3.35
328 329 0.671251 GGACATAGACCGAGCTCAGG 59.329 60.000 15.40 17.55 0.00 3.86
329 330 0.671251 GACATAGACCGAGCTCAGGG 59.329 60.000 22.76 15.64 0.00 4.45
330 331 0.033011 ACATAGACCGAGCTCAGGGT 60.033 55.000 22.76 18.39 39.83 4.34
331 332 0.387202 CATAGACCGAGCTCAGGGTG 59.613 60.000 22.76 14.15 36.46 4.61
332 333 0.757188 ATAGACCGAGCTCAGGGTGG 60.757 60.000 22.76 14.38 36.46 4.61
372 373 3.730761 CCGCAGCCACAGCAAGAC 61.731 66.667 0.00 0.00 43.56 3.01
392 393 6.727824 AGACGATTATTTTGTTGAGGACAG 57.272 37.500 0.00 0.00 39.94 3.51
517 518 2.027377 ACTGAATCTGCAGCTGCTAACT 60.027 45.455 36.61 20.14 42.66 2.24
528 529 4.252073 CAGCTGCTAACTCTTCATCAAGT 58.748 43.478 0.00 0.00 0.00 3.16
555 556 1.700955 GGATAGGTCCTAAGCGTCCA 58.299 55.000 1.78 0.00 41.60 4.02
584 585 0.537188 AGACATTACAGAGGTGCCCG 59.463 55.000 0.00 0.00 0.00 6.13
636 637 4.143094 GCAGAAGTACTAGGCAGAAAAACG 60.143 45.833 0.00 0.00 0.00 3.60
639 640 3.735591 AGTACTAGGCAGAAAAACGCAA 58.264 40.909 0.00 0.00 0.00 4.85
746 747 1.675310 TCTTTGCAGGATGGCGGTG 60.675 57.895 0.00 0.00 35.86 4.94
764 765 3.187700 GGTGCATTACCGTCTACTTGAG 58.812 50.000 0.00 0.00 40.26 3.02
803 804 3.034878 CGAGGTCGGATGATCGCT 58.965 61.111 0.00 0.00 35.37 4.93
866 867 2.143925 GTTCAGCACACAAGGAGTACC 58.856 52.381 0.00 0.00 0.00 3.34
898 899 3.947910 AACAAATGCAGGAACTCCATG 57.052 42.857 0.00 0.00 34.60 3.66
904 905 0.475906 GCAGGAACTCCATGCCCTAT 59.524 55.000 0.00 0.00 34.60 2.57
944 945 6.980978 TCCGTGAAAGAAGATATCATGAAGTC 59.019 38.462 5.32 0.63 32.98 3.01
1067 1068 0.381801 CTTATTGACCGGTGGCATGC 59.618 55.000 14.63 9.90 0.00 4.06
1132 1133 2.022195 CTCTTCAAGACATGGCCATGG 58.978 52.381 41.25 27.02 42.91 3.66
1230 1231 0.323629 TTCTTGGAGTTAGGCCACCG 59.676 55.000 5.01 0.00 34.56 4.94
1307 1308 1.668751 TCAACAACACTTTCACGAGCC 59.331 47.619 0.00 0.00 0.00 4.70
1331 1332 0.524862 GACGGAGCTGACGAACCTAA 59.475 55.000 13.69 0.00 34.93 2.69
1333 1334 1.549170 ACGGAGCTGACGAACCTAATT 59.451 47.619 13.69 0.00 34.93 1.40
1388 1389 2.102420 TCTTCGGAACTGTGCTCTTTGA 59.898 45.455 0.00 0.00 0.00 2.69
1501 1502 3.181454 CCTGGCTTTCCTATACCGACAAT 60.181 47.826 0.00 0.00 0.00 2.71
1515 1516 2.086869 CGACAATTGGATGAGGCTTGT 58.913 47.619 10.83 0.00 33.02 3.16
1555 1556 1.480137 CCAACATTGGTGGTTGTGTGT 59.520 47.619 12.88 0.00 43.10 3.72
1588 1589 5.071519 CAGATATGGATGTGGGAGAGACTTT 59.928 44.000 0.00 0.00 0.00 2.66
1836 1838 8.674263 TTGTAATCCAAGCAACAAAATTTGAT 57.326 26.923 13.19 0.00 0.00 2.57
1866 1868 1.563879 AGGTACAATGGCTGCCATACA 59.436 47.619 32.71 18.28 44.40 2.29
1952 1954 3.285484 CCCACTCATTTGCTTCTATGCT 58.715 45.455 0.00 0.00 0.00 3.79
2113 2115 9.649167 CAATATATGCTCATGATGAACTACTCA 57.351 33.333 0.00 0.00 38.81 3.41
2777 2782 3.834726 CCAAGTGTTTGGCCACGA 58.165 55.556 3.88 0.00 46.84 4.35
2778 2783 2.111162 CCAAGTGTTTGGCCACGAA 58.889 52.632 3.88 0.00 46.84 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.876914 ACATAACTGCGACCACCATATTG 59.123 43.478 0.00 0.00 0.00 1.90
6 7 1.202710 ACAACATAACTGCGACCACCA 60.203 47.619 0.00 0.00 0.00 4.17
7 8 1.196808 CACAACATAACTGCGACCACC 59.803 52.381 0.00 0.00 0.00 4.61
9 10 1.202710 ACCACAACATAACTGCGACCA 60.203 47.619 0.00 0.00 0.00 4.02
10 11 1.463444 GACCACAACATAACTGCGACC 59.537 52.381 0.00 0.00 0.00 4.79
11 12 1.463444 GGACCACAACATAACTGCGAC 59.537 52.381 0.00 0.00 0.00 5.19
12 13 1.346395 AGGACCACAACATAACTGCGA 59.654 47.619 0.00 0.00 0.00 5.10
13 14 1.732259 GAGGACCACAACATAACTGCG 59.268 52.381 0.00 0.00 0.00 5.18
14 15 2.484264 GTGAGGACCACAACATAACTGC 59.516 50.000 0.00 0.00 45.03 4.40
16 17 5.152310 GGGGTGAGGACCACAACATAACT 62.152 52.174 9.32 0.00 46.30 2.24
17 18 2.878526 GGGGTGAGGACCACAACATAAC 60.879 54.545 9.32 0.00 46.30 1.89
18 19 1.353022 GGGGTGAGGACCACAACATAA 59.647 52.381 9.32 0.00 46.30 1.90
19 20 0.988832 GGGGTGAGGACCACAACATA 59.011 55.000 9.32 0.00 46.30 2.29
20 21 1.767692 GGGGTGAGGACCACAACAT 59.232 57.895 9.32 0.00 46.30 2.71
21 22 3.246687 GGGGTGAGGACCACAACA 58.753 61.111 9.32 0.00 46.30 3.33
26 27 3.208592 AGGGAGGGGTGAGGACCA 61.209 66.667 0.00 0.00 45.25 4.02
27 28 2.365768 GAGGGAGGGGTGAGGACC 60.366 72.222 0.00 0.00 42.27 4.46
28 29 2.760385 CGAGGGAGGGGTGAGGAC 60.760 72.222 0.00 0.00 0.00 3.85
29 30 3.273654 ACGAGGGAGGGGTGAGGA 61.274 66.667 0.00 0.00 0.00 3.71
30 31 3.077556 CACGAGGGAGGGGTGAGG 61.078 72.222 0.00 0.00 33.58 3.86
31 32 3.775654 GCACGAGGGAGGGGTGAG 61.776 72.222 0.00 0.00 33.58 3.51
32 33 4.316823 AGCACGAGGGAGGGGTGA 62.317 66.667 0.00 0.00 33.58 4.02
33 34 3.775654 GAGCACGAGGGAGGGGTG 61.776 72.222 0.00 0.00 34.85 4.61
34 35 3.625632 ATGAGCACGAGGGAGGGGT 62.626 63.158 0.00 0.00 0.00 4.95
35 36 2.765807 ATGAGCACGAGGGAGGGG 60.766 66.667 0.00 0.00 0.00 4.79
36 37 2.503061 CATGAGCACGAGGGAGGG 59.497 66.667 0.00 0.00 0.00 4.30
37 38 2.202987 GCATGAGCACGAGGGAGG 60.203 66.667 0.00 0.00 41.58 4.30
38 39 2.202987 GGCATGAGCACGAGGGAG 60.203 66.667 0.00 0.00 44.61 4.30
39 40 2.123248 TTTGGCATGAGCACGAGGGA 62.123 55.000 0.00 0.00 44.61 4.20
40 41 1.033746 ATTTGGCATGAGCACGAGGG 61.034 55.000 0.00 0.00 44.61 4.30
41 42 0.099968 CATTTGGCATGAGCACGAGG 59.900 55.000 0.00 0.00 44.61 4.63
42 43 0.524816 GCATTTGGCATGAGCACGAG 60.525 55.000 0.00 0.00 44.61 4.18
43 44 1.507630 GCATTTGGCATGAGCACGA 59.492 52.632 0.00 0.00 44.61 4.35
44 45 4.082192 GCATTTGGCATGAGCACG 57.918 55.556 0.00 0.00 44.61 5.34
60 61 0.659957 GAAGATGGATCTGCAACGGC 59.340 55.000 0.00 0.00 37.19 5.68
61 62 1.303309 GGAAGATGGATCTGCAACGG 58.697 55.000 0.00 0.00 37.19 4.44
62 63 2.028420 TGGAAGATGGATCTGCAACG 57.972 50.000 0.00 0.00 37.19 4.10
63 64 2.034305 GCATGGAAGATGGATCTGCAAC 59.966 50.000 0.00 0.00 37.19 4.17
64 65 2.092049 AGCATGGAAGATGGATCTGCAA 60.092 45.455 0.00 0.00 37.19 4.08
65 66 1.493446 AGCATGGAAGATGGATCTGCA 59.507 47.619 0.00 0.00 37.19 4.41
66 67 2.152830 GAGCATGGAAGATGGATCTGC 58.847 52.381 0.00 0.00 37.19 4.26
67 68 3.071167 TGAGAGCATGGAAGATGGATCTG 59.929 47.826 0.00 0.00 37.19 2.90
68 69 3.315596 TGAGAGCATGGAAGATGGATCT 58.684 45.455 0.00 0.00 39.22 2.75
69 70 3.766068 TGAGAGCATGGAAGATGGATC 57.234 47.619 0.00 0.00 0.00 3.36
70 71 5.487845 TCATATGAGAGCATGGAAGATGGAT 59.512 40.000 0.00 0.00 35.94 3.41
71 72 4.842380 TCATATGAGAGCATGGAAGATGGA 59.158 41.667 0.00 0.00 35.94 3.41
72 73 5.161943 TCATATGAGAGCATGGAAGATGG 57.838 43.478 0.00 0.00 35.94 3.51
73 74 7.822822 TGTTATCATATGAGAGCATGGAAGATG 59.177 37.037 12.22 0.00 35.94 2.90
74 75 7.914859 TGTTATCATATGAGAGCATGGAAGAT 58.085 34.615 12.22 0.00 35.94 2.40
75 76 7.307131 TGTTATCATATGAGAGCATGGAAGA 57.693 36.000 12.22 0.00 35.94 2.87
76 77 6.092396 GCTGTTATCATATGAGAGCATGGAAG 59.908 42.308 15.90 6.66 35.94 3.46
77 78 5.936372 GCTGTTATCATATGAGAGCATGGAA 59.064 40.000 15.90 0.00 35.94 3.53
78 79 5.012354 TGCTGTTATCATATGAGAGCATGGA 59.988 40.000 15.90 9.57 35.94 3.41
79 80 5.243207 TGCTGTTATCATATGAGAGCATGG 58.757 41.667 15.90 7.91 35.94 3.66
80 81 6.776094 CATGCTGTTATCATATGAGAGCATG 58.224 40.000 31.71 31.71 46.68 4.06
81 82 6.473758 ACATGCTGTTATCATATGAGAGCAT 58.526 36.000 24.65 24.65 40.51 3.79
82 83 5.861727 ACATGCTGTTATCATATGAGAGCA 58.138 37.500 23.16 23.16 0.00 4.26
83 84 5.930569 TGACATGCTGTTATCATATGAGAGC 59.069 40.000 11.78 14.62 0.00 4.09
84 85 7.965045 CATGACATGCTGTTATCATATGAGAG 58.035 38.462 11.78 5.66 30.64 3.20
85 86 7.900782 CATGACATGCTGTTATCATATGAGA 57.099 36.000 11.78 3.36 30.64 3.27
101 102 0.107508 AAGTCCCCGAGCATGACATG 60.108 55.000 11.27 11.27 0.00 3.21
102 103 0.179000 GAAGTCCCCGAGCATGACAT 59.821 55.000 0.00 0.00 0.00 3.06
103 104 0.904865 AGAAGTCCCCGAGCATGACA 60.905 55.000 0.00 0.00 0.00 3.58
104 105 1.067821 CTAGAAGTCCCCGAGCATGAC 59.932 57.143 0.00 0.00 0.00 3.06
105 106 1.403814 CTAGAAGTCCCCGAGCATGA 58.596 55.000 0.00 0.00 0.00 3.07
106 107 0.249657 GCTAGAAGTCCCCGAGCATG 60.250 60.000 0.00 0.00 33.39 4.06
107 108 0.687757 TGCTAGAAGTCCCCGAGCAT 60.688 55.000 0.00 0.00 37.35 3.79
108 109 0.902984 TTGCTAGAAGTCCCCGAGCA 60.903 55.000 0.00 0.00 39.78 4.26
109 110 0.179097 CTTGCTAGAAGTCCCCGAGC 60.179 60.000 0.00 0.00 33.71 5.03
110 111 0.461961 CCTTGCTAGAAGTCCCCGAG 59.538 60.000 0.00 0.00 0.00 4.63
111 112 0.040646 TCCTTGCTAGAAGTCCCCGA 59.959 55.000 0.00 0.00 0.00 5.14
112 113 0.461961 CTCCTTGCTAGAAGTCCCCG 59.538 60.000 0.00 0.00 0.00 5.73
113 114 0.179234 GCTCCTTGCTAGAAGTCCCC 59.821 60.000 0.00 0.00 38.95 4.81
114 115 3.770625 GCTCCTTGCTAGAAGTCCC 57.229 57.895 0.00 0.00 38.95 4.46
124 125 1.069636 CAAACAAGTCGAGCTCCTTGC 60.070 52.381 24.35 7.71 41.36 4.01
125 126 2.213499 ACAAACAAGTCGAGCTCCTTG 58.787 47.619 23.37 23.37 42.91 3.61
126 127 2.158957 TGACAAACAAGTCGAGCTCCTT 60.159 45.455 8.47 3.61 41.41 3.36
127 128 1.412710 TGACAAACAAGTCGAGCTCCT 59.587 47.619 8.47 0.00 41.41 3.69
128 129 1.527311 GTGACAAACAAGTCGAGCTCC 59.473 52.381 8.47 0.00 41.41 4.70
129 130 1.527311 GGTGACAAACAAGTCGAGCTC 59.473 52.381 2.73 2.73 41.41 4.09
130 131 1.583054 GGTGACAAACAAGTCGAGCT 58.417 50.000 0.00 0.00 41.41 4.09
131 132 0.586802 GGGTGACAAACAAGTCGAGC 59.413 55.000 0.00 0.00 41.41 5.03
132 133 2.240493 AGGGTGACAAACAAGTCGAG 57.760 50.000 0.00 0.00 41.41 4.04
133 134 2.169769 AGAAGGGTGACAAACAAGTCGA 59.830 45.455 0.00 0.00 41.41 4.20
134 135 2.561569 AGAAGGGTGACAAACAAGTCG 58.438 47.619 0.00 0.00 41.41 4.18
135 136 5.305585 TGATAGAAGGGTGACAAACAAGTC 58.694 41.667 0.00 0.00 38.99 3.01
136 137 5.304686 TGATAGAAGGGTGACAAACAAGT 57.695 39.130 0.00 0.00 0.00 3.16
137 138 7.770433 TCATATGATAGAAGGGTGACAAACAAG 59.230 37.037 0.00 0.00 0.00 3.16
138 139 7.629157 TCATATGATAGAAGGGTGACAAACAA 58.371 34.615 0.00 0.00 0.00 2.83
139 140 7.125659 TCTCATATGATAGAAGGGTGACAAACA 59.874 37.037 5.72 0.00 0.00 2.83
140 141 7.500992 TCTCATATGATAGAAGGGTGACAAAC 58.499 38.462 5.72 0.00 0.00 2.93
141 142 7.675161 TCTCATATGATAGAAGGGTGACAAA 57.325 36.000 5.72 0.00 0.00 2.83
142 143 6.239430 GCTCTCATATGATAGAAGGGTGACAA 60.239 42.308 19.38 0.00 0.00 3.18
143 144 5.244851 GCTCTCATATGATAGAAGGGTGACA 59.755 44.000 19.38 0.00 0.00 3.58
144 145 5.337169 GGCTCTCATATGATAGAAGGGTGAC 60.337 48.000 19.38 1.04 0.00 3.67
145 146 4.774726 GGCTCTCATATGATAGAAGGGTGA 59.225 45.833 19.38 4.26 0.00 4.02
146 147 4.381398 CGGCTCTCATATGATAGAAGGGTG 60.381 50.000 19.38 3.60 0.00 4.61
147 148 3.766591 CGGCTCTCATATGATAGAAGGGT 59.233 47.826 19.38 0.00 0.00 4.34
148 149 3.766591 ACGGCTCTCATATGATAGAAGGG 59.233 47.826 19.38 3.66 0.00 3.95
149 150 5.398603 AACGGCTCTCATATGATAGAAGG 57.601 43.478 19.38 10.62 0.00 3.46
150 151 5.092105 CGAACGGCTCTCATATGATAGAAG 58.908 45.833 19.38 14.09 0.00 2.85
151 152 4.082733 CCGAACGGCTCTCATATGATAGAA 60.083 45.833 19.38 0.77 0.00 2.10
152 153 3.440522 CCGAACGGCTCTCATATGATAGA 59.559 47.826 19.38 8.13 0.00 1.98
153 154 3.440522 TCCGAACGGCTCTCATATGATAG 59.559 47.826 12.58 12.58 34.68 2.08
154 155 3.418047 TCCGAACGGCTCTCATATGATA 58.582 45.455 5.72 0.00 34.68 2.15
155 156 2.230025 CTCCGAACGGCTCTCATATGAT 59.770 50.000 5.72 0.00 34.68 2.45
156 157 1.609072 CTCCGAACGGCTCTCATATGA 59.391 52.381 5.07 5.07 34.68 2.15
157 158 1.932604 GCTCCGAACGGCTCTCATATG 60.933 57.143 8.48 0.00 34.68 1.78
158 159 0.315568 GCTCCGAACGGCTCTCATAT 59.684 55.000 8.48 0.00 34.68 1.78
159 160 1.035385 TGCTCCGAACGGCTCTCATA 61.035 55.000 8.48 0.00 34.68 2.15
160 161 2.351244 TGCTCCGAACGGCTCTCAT 61.351 57.895 8.48 0.00 34.68 2.90
161 162 2.989253 TGCTCCGAACGGCTCTCA 60.989 61.111 8.48 1.19 34.68 3.27
162 163 2.507324 GTGCTCCGAACGGCTCTC 60.507 66.667 8.48 0.59 34.68 3.20
163 164 2.650116 ATGTGCTCCGAACGGCTCT 61.650 57.895 8.48 0.00 34.68 4.09
164 165 2.125512 ATGTGCTCCGAACGGCTC 60.126 61.111 8.48 3.36 34.68 4.70
165 166 2.434884 CATGTGCTCCGAACGGCT 60.435 61.111 8.48 0.00 34.68 5.52
166 167 3.499737 CCATGTGCTCCGAACGGC 61.500 66.667 8.48 0.00 34.68 5.68
167 168 2.819595 CCCATGTGCTCCGAACGG 60.820 66.667 6.94 6.94 0.00 4.44
168 169 3.499737 GCCCATGTGCTCCGAACG 61.500 66.667 0.00 0.00 0.00 3.95
169 170 2.045926 AGCCCATGTGCTCCGAAC 60.046 61.111 0.00 0.00 36.75 3.95
170 171 2.046023 CAGCCCATGTGCTCCGAA 60.046 61.111 0.00 0.00 40.32 4.30
171 172 4.100084 CCAGCCCATGTGCTCCGA 62.100 66.667 0.00 0.00 40.32 4.55
172 173 2.930385 CTACCAGCCCATGTGCTCCG 62.930 65.000 0.00 0.00 40.32 4.63
173 174 1.153086 CTACCAGCCCATGTGCTCC 60.153 63.158 0.00 0.00 40.32 4.70
174 175 0.471617 ATCTACCAGCCCATGTGCTC 59.528 55.000 0.00 0.00 40.32 4.26
175 176 0.921896 AATCTACCAGCCCATGTGCT 59.078 50.000 0.00 0.00 44.00 4.40
176 177 1.406539 CAAATCTACCAGCCCATGTGC 59.593 52.381 0.00 0.00 0.00 4.57
177 178 2.947652 CTCAAATCTACCAGCCCATGTG 59.052 50.000 0.00 0.00 0.00 3.21
178 179 2.684927 GCTCAAATCTACCAGCCCATGT 60.685 50.000 0.00 0.00 0.00 3.21
179 180 1.952296 GCTCAAATCTACCAGCCCATG 59.048 52.381 0.00 0.00 0.00 3.66
180 181 1.133668 GGCTCAAATCTACCAGCCCAT 60.134 52.381 0.00 0.00 45.04 4.00
181 182 0.255890 GGCTCAAATCTACCAGCCCA 59.744 55.000 0.00 0.00 45.04 5.36
182 183 3.102090 GGCTCAAATCTACCAGCCC 57.898 57.895 0.00 0.00 45.04 5.19
184 185 2.436173 AGTAGGGCTCAAATCTACCAGC 59.564 50.000 0.00 0.00 35.30 4.85
185 186 4.446371 CAAGTAGGGCTCAAATCTACCAG 58.554 47.826 0.00 0.00 35.30 4.00
186 187 3.199946 CCAAGTAGGGCTCAAATCTACCA 59.800 47.826 0.00 0.00 35.30 3.25
187 188 3.454812 TCCAAGTAGGGCTCAAATCTACC 59.545 47.826 0.00 0.00 38.24 3.18
188 189 4.081087 TGTCCAAGTAGGGCTCAAATCTAC 60.081 45.833 0.00 0.00 44.59 2.59
189 190 4.101114 TGTCCAAGTAGGGCTCAAATCTA 58.899 43.478 0.00 0.00 44.59 1.98
190 191 2.912956 TGTCCAAGTAGGGCTCAAATCT 59.087 45.455 0.00 0.00 44.59 2.40
191 192 3.350219 TGTCCAAGTAGGGCTCAAATC 57.650 47.619 0.00 0.00 44.59 2.17
192 193 3.624777 CATGTCCAAGTAGGGCTCAAAT 58.375 45.455 0.00 0.00 44.59 2.32
193 194 2.290896 CCATGTCCAAGTAGGGCTCAAA 60.291 50.000 0.00 0.00 44.59 2.69
194 195 1.281867 CCATGTCCAAGTAGGGCTCAA 59.718 52.381 0.00 0.00 44.59 3.02
195 196 0.911769 CCATGTCCAAGTAGGGCTCA 59.088 55.000 0.00 0.00 44.59 4.26
196 197 0.464554 GCCATGTCCAAGTAGGGCTC 60.465 60.000 0.00 0.00 44.59 4.70
197 198 1.207488 TGCCATGTCCAAGTAGGGCT 61.207 55.000 0.00 0.00 44.59 5.19
198 199 1.032114 GTGCCATGTCCAAGTAGGGC 61.032 60.000 0.00 0.00 44.53 5.19
199 200 0.327924 TGTGCCATGTCCAAGTAGGG 59.672 55.000 0.00 0.00 38.24 3.53
200 201 1.003580 ACTGTGCCATGTCCAAGTAGG 59.996 52.381 0.00 0.00 39.47 3.18
201 202 2.079158 CACTGTGCCATGTCCAAGTAG 58.921 52.381 0.00 0.00 0.00 2.57
202 203 1.271325 CCACTGTGCCATGTCCAAGTA 60.271 52.381 1.29 0.00 0.00 2.24
203 204 0.538057 CCACTGTGCCATGTCCAAGT 60.538 55.000 1.29 0.00 0.00 3.16
204 205 1.870055 GCCACTGTGCCATGTCCAAG 61.870 60.000 1.29 0.00 0.00 3.61
205 206 1.902918 GCCACTGTGCCATGTCCAA 60.903 57.895 1.29 0.00 0.00 3.53
206 207 2.282391 GCCACTGTGCCATGTCCA 60.282 61.111 1.29 0.00 0.00 4.02
214 215 1.028905 TTGTACTTTGGCCACTGTGC 58.971 50.000 3.88 11.78 0.00 4.57
215 216 1.002900 CGTTGTACTTTGGCCACTGTG 60.003 52.381 3.88 0.00 0.00 3.66
216 217 1.305201 CGTTGTACTTTGGCCACTGT 58.695 50.000 3.88 10.29 0.00 3.55
217 218 0.591170 CCGTTGTACTTTGGCCACTG 59.409 55.000 3.88 3.23 0.00 3.66
218 219 0.181824 ACCGTTGTACTTTGGCCACT 59.818 50.000 3.88 0.00 0.00 4.00
219 220 0.589708 GACCGTTGTACTTTGGCCAC 59.410 55.000 3.88 0.00 0.00 5.01
220 221 0.535553 GGACCGTTGTACTTTGGCCA 60.536 55.000 0.00 0.00 0.00 5.36
221 222 0.535553 TGGACCGTTGTACTTTGGCC 60.536 55.000 0.00 0.00 0.00 5.36
222 223 0.872388 CTGGACCGTTGTACTTTGGC 59.128 55.000 0.00 0.00 0.00 4.52
223 224 2.249844 ACTGGACCGTTGTACTTTGG 57.750 50.000 0.00 0.00 0.00 3.28
224 225 5.934935 ATAAACTGGACCGTTGTACTTTG 57.065 39.130 0.00 0.00 0.00 2.77
225 226 6.947644 AAATAAACTGGACCGTTGTACTTT 57.052 33.333 0.00 0.42 0.00 2.66
226 227 6.427853 GGTAAATAAACTGGACCGTTGTACTT 59.572 38.462 0.00 0.00 0.00 2.24
227 228 5.934043 GGTAAATAAACTGGACCGTTGTACT 59.066 40.000 0.00 0.00 0.00 2.73
228 229 5.163963 CGGTAAATAAACTGGACCGTTGTAC 60.164 44.000 3.66 0.00 46.20 2.90
229 230 4.928615 CGGTAAATAAACTGGACCGTTGTA 59.071 41.667 3.66 0.54 46.20 2.41
230 231 3.747529 CGGTAAATAAACTGGACCGTTGT 59.252 43.478 3.66 0.00 46.20 3.32
231 232 4.330740 CGGTAAATAAACTGGACCGTTG 57.669 45.455 3.66 0.00 46.20 4.10
238 239 4.624015 TCGCTATCCGGTAAATAAACTGG 58.376 43.478 0.00 0.00 45.84 4.00
239 240 5.751990 AGTTCGCTATCCGGTAAATAAACTG 59.248 40.000 0.00 0.00 37.59 3.16
240 241 5.910614 AGTTCGCTATCCGGTAAATAAACT 58.089 37.500 0.00 3.82 37.59 2.66
241 242 7.698836 TTAGTTCGCTATCCGGTAAATAAAC 57.301 36.000 0.00 1.37 37.59 2.01
242 243 7.385752 CCATTAGTTCGCTATCCGGTAAATAAA 59.614 37.037 0.00 0.00 37.59 1.40
243 244 6.869913 CCATTAGTTCGCTATCCGGTAAATAA 59.130 38.462 0.00 0.00 37.59 1.40
244 245 6.015180 ACCATTAGTTCGCTATCCGGTAAATA 60.015 38.462 0.00 0.00 37.59 1.40
245 246 5.221581 ACCATTAGTTCGCTATCCGGTAAAT 60.222 40.000 0.00 0.00 37.59 1.40
246 247 4.099881 ACCATTAGTTCGCTATCCGGTAAA 59.900 41.667 0.00 0.00 37.59 2.01
247 248 3.638160 ACCATTAGTTCGCTATCCGGTAA 59.362 43.478 0.00 0.00 37.59 2.85
248 249 3.225104 ACCATTAGTTCGCTATCCGGTA 58.775 45.455 0.00 0.00 37.59 4.02
249 250 2.037144 ACCATTAGTTCGCTATCCGGT 58.963 47.619 0.00 0.00 37.59 5.28
250 251 2.814280 ACCATTAGTTCGCTATCCGG 57.186 50.000 0.00 0.00 37.59 5.14
251 252 5.401674 GTCTTAACCATTAGTTCGCTATCCG 59.598 44.000 0.00 0.00 40.05 4.18
252 253 6.278363 TGTCTTAACCATTAGTTCGCTATCC 58.722 40.000 0.00 0.00 40.05 2.59
253 254 7.766219 TTGTCTTAACCATTAGTTCGCTATC 57.234 36.000 0.00 0.00 40.05 2.08
254 255 8.556213 TTTTGTCTTAACCATTAGTTCGCTAT 57.444 30.769 0.00 0.00 40.05 2.97
255 256 7.118680 CCTTTTGTCTTAACCATTAGTTCGCTA 59.881 37.037 0.00 0.00 40.05 4.26
256 257 6.072673 CCTTTTGTCTTAACCATTAGTTCGCT 60.073 38.462 0.00 0.00 40.05 4.93
257 258 6.084277 CCTTTTGTCTTAACCATTAGTTCGC 58.916 40.000 0.00 0.00 40.05 4.70
258 259 7.198306 ACCTTTTGTCTTAACCATTAGTTCG 57.802 36.000 0.00 0.00 40.05 3.95
259 260 7.172019 TCGACCTTTTGTCTTAACCATTAGTTC 59.828 37.037 0.00 0.00 42.13 3.01
260 261 6.993902 TCGACCTTTTGTCTTAACCATTAGTT 59.006 34.615 0.00 0.00 42.13 2.24
261 262 6.426025 GTCGACCTTTTGTCTTAACCATTAGT 59.574 38.462 3.51 0.00 42.13 2.24
262 263 6.400727 CGTCGACCTTTTGTCTTAACCATTAG 60.401 42.308 10.58 0.00 42.13 1.73
263 264 5.406175 CGTCGACCTTTTGTCTTAACCATTA 59.594 40.000 10.58 0.00 42.13 1.90
264 265 4.212636 CGTCGACCTTTTGTCTTAACCATT 59.787 41.667 10.58 0.00 42.13 3.16
265 266 3.744426 CGTCGACCTTTTGTCTTAACCAT 59.256 43.478 10.58 0.00 42.13 3.55
266 267 3.125316 CGTCGACCTTTTGTCTTAACCA 58.875 45.455 10.58 0.00 42.13 3.67
267 268 2.096565 GCGTCGACCTTTTGTCTTAACC 60.097 50.000 10.58 0.00 42.13 2.85
268 269 2.096565 GGCGTCGACCTTTTGTCTTAAC 60.097 50.000 10.58 0.00 42.13 2.01
269 270 2.137523 GGCGTCGACCTTTTGTCTTAA 58.862 47.619 10.58 0.00 42.13 1.85
270 271 1.068895 TGGCGTCGACCTTTTGTCTTA 59.931 47.619 10.58 0.00 42.13 2.10
271 272 0.179067 TGGCGTCGACCTTTTGTCTT 60.179 50.000 10.58 0.00 42.13 3.01
272 273 0.600255 CTGGCGTCGACCTTTTGTCT 60.600 55.000 10.58 0.00 42.13 3.41
273 274 0.599204 TCTGGCGTCGACCTTTTGTC 60.599 55.000 10.58 0.00 40.81 3.18
274 275 0.878961 GTCTGGCGTCGACCTTTTGT 60.879 55.000 10.58 0.00 0.00 2.83
275 276 1.860078 GTCTGGCGTCGACCTTTTG 59.140 57.895 10.58 0.00 0.00 2.44
276 277 1.663702 CGTCTGGCGTCGACCTTTT 60.664 57.895 10.58 0.00 35.54 2.27
277 278 2.049433 CGTCTGGCGTCGACCTTT 60.049 61.111 10.58 0.00 35.54 3.11
278 279 2.473664 CTTCGTCTGGCGTCGACCTT 62.474 60.000 10.58 0.00 42.13 3.50
279 280 2.979197 CTTCGTCTGGCGTCGACCT 61.979 63.158 10.58 0.00 42.13 3.85
280 281 2.504244 CTTCGTCTGGCGTCGACC 60.504 66.667 10.58 2.55 42.13 4.79
281 282 1.512310 CTCTTCGTCTGGCGTCGAC 60.512 63.158 5.18 5.18 42.13 4.20
282 283 2.687805 CCTCTTCGTCTGGCGTCGA 61.688 63.158 0.09 0.00 42.13 4.20
283 284 2.202492 CCTCTTCGTCTGGCGTCG 60.202 66.667 0.09 0.00 42.13 5.12
284 285 0.733223 GAACCTCTTCGTCTGGCGTC 60.733 60.000 0.09 0.00 42.13 5.19
285 286 1.289380 GAACCTCTTCGTCTGGCGT 59.711 57.895 0.09 0.00 42.13 5.68
286 287 0.319555 TTGAACCTCTTCGTCTGGCG 60.320 55.000 0.00 0.00 43.01 5.69
287 288 1.000955 TCTTGAACCTCTTCGTCTGGC 59.999 52.381 0.00 0.00 0.00 4.85
288 289 3.257393 CATCTTGAACCTCTTCGTCTGG 58.743 50.000 0.00 0.00 0.00 3.86
289 290 3.056536 TCCATCTTGAACCTCTTCGTCTG 60.057 47.826 0.00 0.00 0.00 3.51
290 291 3.056465 GTCCATCTTGAACCTCTTCGTCT 60.056 47.826 0.00 0.00 0.00 4.18
291 292 3.254892 GTCCATCTTGAACCTCTTCGTC 58.745 50.000 0.00 0.00 0.00 4.20
292 293 2.632996 TGTCCATCTTGAACCTCTTCGT 59.367 45.455 0.00 0.00 0.00 3.85
293 294 3.319137 TGTCCATCTTGAACCTCTTCG 57.681 47.619 0.00 0.00 0.00 3.79
294 295 6.045955 GTCTATGTCCATCTTGAACCTCTTC 58.954 44.000 0.00 0.00 0.00 2.87
295 296 5.104735 GGTCTATGTCCATCTTGAACCTCTT 60.105 44.000 0.00 0.00 0.00 2.85
296 297 4.407296 GGTCTATGTCCATCTTGAACCTCT 59.593 45.833 0.00 0.00 0.00 3.69
297 298 4.698575 GGTCTATGTCCATCTTGAACCTC 58.301 47.826 0.00 0.00 0.00 3.85
298 299 3.133003 CGGTCTATGTCCATCTTGAACCT 59.867 47.826 0.00 0.00 0.00 3.50
299 300 3.132289 TCGGTCTATGTCCATCTTGAACC 59.868 47.826 0.00 0.00 0.00 3.62
300 301 4.363999 CTCGGTCTATGTCCATCTTGAAC 58.636 47.826 0.00 0.00 0.00 3.18
301 302 3.181475 GCTCGGTCTATGTCCATCTTGAA 60.181 47.826 0.00 0.00 0.00 2.69
302 303 2.362397 GCTCGGTCTATGTCCATCTTGA 59.638 50.000 0.00 0.00 0.00 3.02
303 304 2.363680 AGCTCGGTCTATGTCCATCTTG 59.636 50.000 0.00 0.00 0.00 3.02
304 305 2.625790 GAGCTCGGTCTATGTCCATCTT 59.374 50.000 0.00 0.00 0.00 2.40
305 306 2.235016 GAGCTCGGTCTATGTCCATCT 58.765 52.381 0.00 0.00 0.00 2.90
306 307 1.957177 TGAGCTCGGTCTATGTCCATC 59.043 52.381 9.64 0.00 0.00 3.51
307 308 1.959985 CTGAGCTCGGTCTATGTCCAT 59.040 52.381 14.84 0.00 0.00 3.41
308 309 1.393603 CTGAGCTCGGTCTATGTCCA 58.606 55.000 14.84 0.00 0.00 4.02
309 310 0.671251 CCTGAGCTCGGTCTATGTCC 59.329 60.000 21.06 0.00 0.00 4.02
310 311 0.671251 CCCTGAGCTCGGTCTATGTC 59.329 60.000 21.06 0.00 0.00 3.06
311 312 0.033011 ACCCTGAGCTCGGTCTATGT 60.033 55.000 21.06 9.13 0.00 2.29
312 313 0.387202 CACCCTGAGCTCGGTCTATG 59.613 60.000 21.06 9.52 0.00 2.23
313 314 0.757188 CCACCCTGAGCTCGGTCTAT 60.757 60.000 21.06 0.73 0.00 1.98
314 315 1.379977 CCACCCTGAGCTCGGTCTA 60.380 63.158 21.06 0.00 0.00 2.59
315 316 2.681778 CCACCCTGAGCTCGGTCT 60.682 66.667 21.06 2.60 0.00 3.85
316 317 3.775654 CCCACCCTGAGCTCGGTC 61.776 72.222 21.06 0.00 0.00 4.79
317 318 2.238319 TATCCCACCCTGAGCTCGGT 62.238 60.000 21.06 14.23 0.00 4.69
318 319 1.048724 TTATCCCACCCTGAGCTCGG 61.049 60.000 16.14 16.14 0.00 4.63
319 320 0.105039 GTTATCCCACCCTGAGCTCG 59.895 60.000 9.64 3.88 0.00 5.03
320 321 0.470341 GGTTATCCCACCCTGAGCTC 59.530 60.000 6.82 6.82 0.00 4.09
321 322 0.044855 AGGTTATCCCACCCTGAGCT 59.955 55.000 0.00 0.00 37.58 4.09
322 323 0.919710 AAGGTTATCCCACCCTGAGC 59.080 55.000 0.00 0.00 37.58 4.26
323 324 2.196595 TCAAGGTTATCCCACCCTGAG 58.803 52.381 0.00 0.00 33.09 3.35
324 325 2.352561 TCAAGGTTATCCCACCCTGA 57.647 50.000 0.00 0.00 35.28 3.86
325 326 2.945890 GCTTCAAGGTTATCCCACCCTG 60.946 54.545 0.00 0.00 37.58 4.45
326 327 1.285078 GCTTCAAGGTTATCCCACCCT 59.715 52.381 0.00 0.00 37.58 4.34
327 328 1.763968 GCTTCAAGGTTATCCCACCC 58.236 55.000 0.00 0.00 37.58 4.61
328 329 1.065709 TCGCTTCAAGGTTATCCCACC 60.066 52.381 0.00 0.00 37.04 4.61
329 330 2.007608 GTCGCTTCAAGGTTATCCCAC 58.992 52.381 0.00 0.00 34.66 4.61
330 331 1.065709 GGTCGCTTCAAGGTTATCCCA 60.066 52.381 0.00 0.00 34.66 4.37
331 332 1.664873 GGTCGCTTCAAGGTTATCCC 58.335 55.000 0.00 0.00 0.00 3.85
332 333 1.287425 CGGTCGCTTCAAGGTTATCC 58.713 55.000 0.00 0.00 0.00 2.59
363 364 6.312399 TCAACAAAATAATCGTCTTGCTGT 57.688 33.333 0.00 0.00 0.00 4.40
372 373 6.073276 TCACACTGTCCTCAACAAAATAATCG 60.073 38.462 0.00 0.00 37.45 3.34
412 413 0.036732 TGACCTTCCTCACCACATGC 59.963 55.000 0.00 0.00 0.00 4.06
451 452 0.746204 TTCTTGCGTGCCTCACAACA 60.746 50.000 0.00 0.00 33.40 3.33
506 507 4.093115 CACTTGATGAAGAGTTAGCAGCTG 59.907 45.833 10.11 10.11 32.98 4.24
517 518 1.207089 CCCGCTACCACTTGATGAAGA 59.793 52.381 0.00 0.00 32.98 2.87
528 529 4.613143 GGACCTATCCCGCTACCA 57.387 61.111 0.00 0.00 39.39 3.25
555 556 3.353557 TCTGTAATGTCTAGTGCCTCGT 58.646 45.455 0.00 0.00 0.00 4.18
584 585 2.163601 AACTACCTTGGGACGACGGC 62.164 60.000 0.00 0.00 0.00 5.68
691 692 7.287005 ACTGAAATGAGATCATACATGCCAAAT 59.713 33.333 0.00 0.00 35.10 2.32
746 747 3.491104 CCTCCTCAAGTAGACGGTAATGC 60.491 52.174 0.00 0.00 0.00 3.56
764 765 1.026584 GCTCCTTCTCGTACTCCTCC 58.973 60.000 0.00 0.00 0.00 4.30
866 867 8.437742 GTTCCTGCATTTGTTATGAGAAAATTG 58.562 33.333 0.00 0.00 0.00 2.32
898 899 1.003718 GGCCACGTATCCATAGGGC 60.004 63.158 0.00 0.86 40.63 5.19
904 905 1.145156 CGGAATGGCCACGTATCCA 59.855 57.895 21.86 9.95 35.94 3.41
964 965 1.066605 GAGCTTCGCCCTTCGTATGTA 59.933 52.381 0.00 0.00 39.67 2.29
1015 1016 1.017177 GCGCCATTGTAGGTCGTCAA 61.017 55.000 0.00 0.00 33.01 3.18
1018 1019 2.125269 GGCGCCATTGTAGGTCGT 60.125 61.111 24.80 0.00 33.01 4.34
1045 1046 0.958382 TGCCACCGGTCAATAAGTGC 60.958 55.000 2.59 0.00 0.00 4.40
1085 1086 2.503356 GTCATCTCCCCACACAGAAGAT 59.497 50.000 0.00 0.00 0.00 2.40
1132 1133 2.798976 TTGATTGGCAAAGCAGTGAC 57.201 45.000 3.01 0.00 32.31 3.67
1230 1231 5.012893 CCCTTTTTATCTGGCATAGGATCC 58.987 45.833 2.48 2.48 0.00 3.36
1307 1308 2.126307 CGTCAGCTCCGTCTGGTG 60.126 66.667 0.00 0.00 34.91 4.17
1331 1332 1.447317 CCGGGCATAGCGCTCAAAAT 61.447 55.000 16.34 0.00 43.64 1.82
1333 1334 2.513666 CCGGGCATAGCGCTCAAA 60.514 61.111 16.34 0.00 43.64 2.69
1388 1389 3.357082 AGCTACCCCCGGAGTCCT 61.357 66.667 0.73 0.00 0.00 3.85
1479 1480 1.760613 TGTCGGTATAGGAAAGCCAGG 59.239 52.381 0.00 0.00 36.29 4.45
1501 1502 1.839994 CCTCCTACAAGCCTCATCCAA 59.160 52.381 0.00 0.00 0.00 3.53
1515 1516 2.356535 GGACGTACCAGAACTCCTCCTA 60.357 54.545 0.00 0.00 38.79 2.94
1801 1803 4.340666 TGCTTGGATTACAAAAGAGCACAA 59.659 37.500 0.00 0.00 38.91 3.33
1836 1838 5.067674 GCAGCCATTGTACCTATCATCAAAA 59.932 40.000 0.00 0.00 0.00 2.44
1866 1868 8.237811 ACATTAAGTTGAAAGTCAATCTGGTT 57.762 30.769 0.00 0.00 38.79 3.67
1981 1983 1.719063 AAGCCTCCCAAACTGCCTCA 61.719 55.000 0.00 0.00 0.00 3.86
2113 2115 4.510340 CCTAACAGCACACGAGTAAAAAGT 59.490 41.667 0.00 0.00 0.00 2.66
2311 2314 9.673454 GTCTATGTATTCACACATGTATTACGA 57.327 33.333 0.00 0.00 39.46 3.43
2777 2782 4.439057 ACTCGTACCGTAATGCATGATTT 58.561 39.130 0.00 0.00 0.00 2.17
2778 2783 4.054780 ACTCGTACCGTAATGCATGATT 57.945 40.909 0.00 0.00 0.00 2.57
2951 2956 0.615544 CCCATGTTGGCTCCCACATT 60.616 55.000 3.16 0.00 35.79 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.