Multiple sequence alignment - TraesCS5D01G105600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G105600 chr5D 100.000 4694 0 0 1 4694 119495985 119491292 0.000000e+00 8669.0
1 TraesCS5D01G105600 chr5D 100.000 1580 0 0 4941 6520 119491045 119489466 0.000000e+00 2918.0
2 TraesCS5D01G105600 chr5D 82.447 564 79 9 328 881 367408367 367408920 5.920000e-130 475.0
3 TraesCS5D01G105600 chr5D 96.610 236 8 0 4459 4694 119491045 119490810 6.130000e-105 392.0
4 TraesCS5D01G105600 chr5D 96.610 236 8 0 4941 5176 119491527 119491292 6.130000e-105 392.0
5 TraesCS5D01G105600 chr5D 95.041 242 11 1 3304 3544 119492442 119492201 4.770000e-101 379.0
6 TraesCS5D01G105600 chr5D 95.041 242 11 1 3544 3785 119492682 119492442 4.770000e-101 379.0
7 TraesCS5D01G105600 chr5D 96.491 171 6 0 4488 4658 119491462 119491292 3.850000e-72 283.0
8 TraesCS5D01G105600 chr5D 96.491 171 6 0 4524 4694 119491498 119491328 3.850000e-72 283.0
9 TraesCS5D01G105600 chr5D 95.322 171 8 0 4524 4694 119491016 119490846 8.330000e-69 272.0
10 TraesCS5D01G105600 chr5D 93.407 182 12 0 4970 5151 119490980 119490799 3.000000e-68 270.0
11 TraesCS5D01G105600 chr5D 93.407 182 12 0 4488 4669 119490980 119490799 3.000000e-68 270.0
12 TraesCS5D01G105600 chr5D 93.407 182 12 0 5006 5187 119491016 119490835 3.000000e-68 270.0
13 TraesCS5D01G105600 chr5D 93.407 182 12 0 5006 5187 119491498 119491317 3.000000e-68 270.0
14 TraesCS5D01G105600 chr5D 95.000 100 5 0 3813 3912 558970432 558970531 2.430000e-34 158.0
15 TraesCS5D01G105600 chr5B 95.713 1796 59 9 2034 3819 132296235 132294448 0.000000e+00 2874.0
16 TraesCS5D01G105600 chr5B 90.271 1881 105 30 182 2039 132298099 132296274 0.000000e+00 2388.0
17 TraesCS5D01G105600 chr5B 90.641 951 53 20 4941 5862 132293887 132292944 0.000000e+00 1230.0
18 TraesCS5D01G105600 chr5B 92.750 800 42 2 3911 4694 132294451 132293652 0.000000e+00 1142.0
19 TraesCS5D01G105600 chr5B 81.979 566 78 16 328 881 451178700 451179253 5.960000e-125 459.0
20 TraesCS5D01G105600 chr5B 96.281 242 9 0 3544 3785 132294964 132294723 1.320000e-106 398.0
21 TraesCS5D01G105600 chr5B 95.868 242 9 1 3304 3544 132294723 132294482 2.200000e-104 390.0
22 TraesCS5D01G105600 chr5B 93.750 256 6 5 6274 6519 132291085 132290830 6.170000e-100 375.0
23 TraesCS5D01G105600 chr5B 94.505 182 10 0 5006 5187 132293858 132293677 1.380000e-71 281.0
24 TraesCS5D01G105600 chr5B 86.076 237 22 10 5962 6189 132292631 132292397 1.820000e-60 244.0
25 TraesCS5D01G105600 chr5B 90.184 163 8 5 1 163 132298306 132298152 8.570000e-49 206.0
26 TraesCS5D01G105600 chr5B 95.000 100 5 0 3816 3915 352488715 352488616 2.430000e-34 158.0
27 TraesCS5D01G105600 chr5B 80.000 135 23 4 1 135 451178567 451178697 5.380000e-16 97.1
28 TraesCS5D01G105600 chr5B 90.141 71 6 1 5816 5886 105767657 105767588 2.500000e-14 91.6
29 TraesCS5D01G105600 chr5A 94.589 1497 57 10 2024 3509 129608912 129607429 0.000000e+00 2294.0
30 TraesCS5D01G105600 chr5A 90.565 1399 63 25 667 2030 129610308 129608944 0.000000e+00 1788.0
31 TraesCS5D01G105600 chr5A 88.996 936 62 15 5000 5898 129606104 129605173 0.000000e+00 1120.0
32 TraesCS5D01G105600 chr5A 92.676 751 35 6 3911 4649 129607090 129606348 0.000000e+00 1064.0
33 TraesCS5D01G105600 chr5A 89.958 478 47 1 186 662 129619996 129619519 3.340000e-172 616.0
34 TraesCS5D01G105600 chr5A 96.353 329 12 0 3491 3819 129607415 129607087 5.750000e-150 542.0
35 TraesCS5D01G105600 chr5A 96.694 242 7 1 3304 3544 129607362 129607121 1.020000e-107 401.0
36 TraesCS5D01G105600 chr5A 88.650 326 32 3 5968 6289 129604944 129604620 6.130000e-105 392.0
37 TraesCS5D01G105600 chr5A 94.400 250 6 5 6276 6520 129604598 129604352 1.720000e-100 377.0
38 TraesCS5D01G105600 chr5A 95.288 191 9 0 4941 5131 129606538 129606348 2.950000e-78 303.0
39 TraesCS5D01G105600 chr5A 92.754 207 15 0 3544 3750 129607635 129607429 3.820000e-77 300.0
40 TraesCS5D01G105600 chr5A 93.956 182 11 0 4970 5151 129606098 129605917 6.440000e-70 276.0
41 TraesCS5D01G105600 chr5A 93.956 182 11 0 4488 4669 129606098 129605917 6.440000e-70 276.0
42 TraesCS5D01G105600 chr5A 92.655 177 13 0 4518 4694 129606104 129605928 8.390000e-64 255.0
43 TraesCS5D01G105600 chr5A 96.296 54 2 0 3732 3785 129607415 129607362 9.000000e-14 89.8
44 TraesCS5D01G105600 chr1D 83.066 561 73 11 331 880 204385617 204385068 2.110000e-134 490.0
45 TraesCS5D01G105600 chr1D 82.862 566 75 10 331 885 345276373 345275819 7.600000e-134 488.0
46 TraesCS5D01G105600 chr1D 88.618 123 9 4 3816 3933 135931047 135930925 1.890000e-30 145.0
47 TraesCS5D01G105600 chr1D 83.846 130 18 3 6 135 345276505 345276379 3.190000e-23 121.0
48 TraesCS5D01G105600 chr1D 83.810 105 15 2 1 105 345276553 345276451 1.500000e-16 99.0
49 TraesCS5D01G105600 chr1D 87.342 79 8 2 5826 5903 14741241 14741164 9.000000e-14 89.8
50 TraesCS5D01G105600 chr7A 81.930 570 79 16 328 885 219858553 219859110 1.660000e-125 460.0
51 TraesCS5D01G105600 chr7A 82.993 147 20 4 4 146 567386094 567386239 1.910000e-25 128.0
52 TraesCS5D01G105600 chr7A 80.000 135 22 5 1 135 219858421 219858550 1.940000e-15 95.3
53 TraesCS5D01G105600 chr2D 82.028 562 79 12 331 881 602692654 602692104 5.960000e-125 459.0
54 TraesCS5D01G105600 chr2D 93.269 104 7 0 3809 3912 65323897 65323794 3.150000e-33 154.0
55 TraesCS5D01G105600 chr2A 81.979 566 78 16 328 881 69265260 69265813 5.960000e-125 459.0
56 TraesCS5D01G105600 chr2A 80.741 135 22 4 1 135 69265127 69265257 1.160000e-17 102.0
57 TraesCS5D01G105600 chr1B 81.850 573 79 17 328 888 533405104 533405663 5.960000e-125 459.0
58 TraesCS5D01G105600 chr1B 80.741 135 22 4 1 135 533404971 533405101 1.160000e-17 102.0
59 TraesCS5D01G105600 chr7B 95.000 100 5 0 3816 3915 589348319 589348418 2.430000e-34 158.0
60 TraesCS5D01G105600 chr7B 93.269 104 7 0 3816 3919 588875013 588874910 3.150000e-33 154.0
61 TraesCS5D01G105600 chr6B 93.269 104 7 0 3813 3916 218218262 218218159 3.150000e-33 154.0
62 TraesCS5D01G105600 chr3B 91.818 110 9 0 3803 3912 58678439 58678330 3.150000e-33 154.0
63 TraesCS5D01G105600 chr2B 92.523 107 8 0 3806 3912 230532413 230532519 3.150000e-33 154.0
64 TraesCS5D01G105600 chr2B 87.059 85 10 1 5814 5898 796178775 796178858 1.940000e-15 95.3
65 TraesCS5D01G105600 chr7D 83.537 164 23 3 4 164 228439749 228439911 4.070000e-32 150.0
66 TraesCS5D01G105600 chr7D 84.906 106 10 6 5815 5917 182608444 182608342 1.160000e-17 102.0
67 TraesCS5D01G105600 chr4A 87.952 83 9 1 5816 5898 472670444 472670525 5.380000e-16 97.1
68 TraesCS5D01G105600 chr4D 86.905 84 10 1 5815 5898 51078993 51079075 6.960000e-15 93.5
69 TraesCS5D01G105600 chr3A 88.158 76 7 2 5816 5891 35991304 35991377 9.000000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G105600 chr5D 119489466 119495985 6519 True 1865.857143 8669 96.021857 1 6520 7 chr5D.!!$R1 6519
1 TraesCS5D01G105600 chr5D 367408367 367408920 553 False 475.000000 475 82.447000 328 881 1 chr5D.!!$F1 553
2 TraesCS5D01G105600 chr5D 119491292 119492682 1390 True 331.000000 392 95.513500 3304 5187 6 chr5D.!!$R2 1883
3 TraesCS5D01G105600 chr5B 132290830 132298306 7476 True 952.800000 2874 92.603900 1 6519 10 chr5B.!!$R3 6518
4 TraesCS5D01G105600 chr5B 451178567 451179253 686 False 278.050000 459 80.989500 1 881 2 chr5B.!!$F1 880
5 TraesCS5D01G105600 chr5A 129604352 129610308 5956 True 676.985714 2294 93.416286 667 6520 14 chr5A.!!$R2 5853
6 TraesCS5D01G105600 chr1D 204385068 204385617 549 True 490.000000 490 83.066000 331 880 1 chr1D.!!$R3 549
7 TraesCS5D01G105600 chr1D 345275819 345276553 734 True 236.000000 488 83.506000 1 885 3 chr1D.!!$R4 884
8 TraesCS5D01G105600 chr7A 219858421 219859110 689 False 277.650000 460 80.965000 1 885 2 chr7A.!!$F2 884
9 TraesCS5D01G105600 chr2D 602692104 602692654 550 True 459.000000 459 82.028000 331 881 1 chr2D.!!$R2 550
10 TraesCS5D01G105600 chr2A 69265127 69265813 686 False 280.500000 459 81.360000 1 881 2 chr2A.!!$F1 880
11 TraesCS5D01G105600 chr1B 533404971 533405663 692 False 280.500000 459 81.295500 1 888 2 chr1B.!!$F1 887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 792 0.030101 GAGAGGCTTCGTCGGAGATG 59.970 60.000 4.21 0.00 46.63 2.90 F
1096 1193 0.045778 ACCCTAACCCTAGCCACCAT 59.954 55.000 0.00 0.00 0.00 3.55 F
1420 1530 1.891150 AGGTTTCCTGAATTGCAGCAG 59.109 47.619 0.00 6.38 43.50 4.24 F
1584 1706 2.814805 ATGCTTGCACCATAAGTCCT 57.185 45.000 0.00 0.00 0.00 3.85 F
1602 1724 3.519913 GTCCTAATCCTGAGGAACAAGGT 59.480 47.826 20.18 0.00 44.77 3.50 F
4497 4745 0.106318 GCCCCTGAAGAAGATGGCAT 60.106 55.000 0.00 0.00 41.08 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2382 2569 0.652592 GTGCGCACAGATACCATGTC 59.347 55.000 34.52 2.48 0.00 3.06 R
2549 2736 2.582728 ACACGCCCATTATGCATTTG 57.417 45.000 3.54 3.23 0.00 2.32 R
3193 3391 0.951558 AAAGCAGTTTGCCTACGGTG 59.048 50.000 0.00 0.00 46.52 4.94 R
3199 3397 3.728385 AGGAGATAAAGCAGTTTGCCT 57.272 42.857 0.00 0.00 46.52 4.75 R
4499 4747 0.891904 TTGGTACCTTCTTTGCCCGC 60.892 55.000 14.36 0.00 0.00 6.13 R
5689 6321 0.109597 CATTCAACAGGGCTCGCAAC 60.110 55.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 122 2.380064 AAGGATTGTTGGTTCCAGCA 57.620 45.000 4.34 4.34 34.27 4.41
107 151 5.553123 TCGAAGCCAGTTGTAGGAAAATTA 58.447 37.500 0.00 0.00 0.00 1.40
109 153 5.642063 CGAAGCCAGTTGTAGGAAAATTAGA 59.358 40.000 0.00 0.00 0.00 2.10
120 164 5.046288 AGGAAAATTAGAGCTGATCCAGG 57.954 43.478 0.00 0.00 31.21 4.45
135 179 5.500234 TGATCCAGGAAAACCAAGATAGTG 58.500 41.667 0.00 0.00 0.00 2.74
163 207 0.685097 AAAGGACGCTAGTTCCAGCA 59.315 50.000 13.30 0.00 41.88 4.41
164 208 0.037232 AAGGACGCTAGTTCCAGCAC 60.037 55.000 13.30 0.00 41.88 4.40
165 209 1.448013 GGACGCTAGTTCCAGCACC 60.448 63.158 7.47 0.00 41.88 5.01
166 210 1.805945 GACGCTAGTTCCAGCACCG 60.806 63.158 0.00 0.00 41.88 4.94
169 213 1.811679 GCTAGTTCCAGCACCGCTC 60.812 63.158 0.00 0.00 41.40 5.03
170 214 1.517257 CTAGTTCCAGCACCGCTCG 60.517 63.158 0.00 0.00 36.40 5.03
171 215 3.642778 TAGTTCCAGCACCGCTCGC 62.643 63.158 0.00 0.00 36.40 5.03
191 269 0.391130 TGCCGGTCACAGCATAACTC 60.391 55.000 1.90 0.00 33.08 3.01
204 282 3.993107 AGCATAACTCGCTAGGACGTAGT 60.993 47.826 4.23 0.00 41.04 2.73
225 303 1.811266 CACTCGATGCCGGAGTTGG 60.811 63.158 5.05 0.00 36.24 3.77
230 308 1.002624 GATGCCGGAGTTGGAACCA 60.003 57.895 5.05 0.00 0.00 3.67
249 327 2.752358 CCAGTGGAGGAGCTGCAA 59.248 61.111 8.35 0.00 32.80 4.08
250 328 1.302285 CCAGTGGAGGAGCTGCAAT 59.698 57.895 8.35 0.00 32.80 3.56
254 332 2.899339 GGAGGAGCTGCAATCGCC 60.899 66.667 8.35 0.95 37.32 5.54
268 346 0.478942 ATCGCCAGGGAGTAGAGCTA 59.521 55.000 0.00 0.00 0.00 3.32
275 353 1.775459 AGGGAGTAGAGCTACATCCGA 59.225 52.381 10.04 0.00 38.48 4.55
289 367 1.068333 CATCCGACAAGGGCAAAGTTG 60.068 52.381 0.00 0.00 41.52 3.16
297 375 1.830847 GGGCAAAGTTGGAACCCGT 60.831 57.895 0.00 0.00 0.00 5.28
302 380 1.333619 CAAAGTTGGAACCCGTGAGTG 59.666 52.381 0.00 0.00 0.00 3.51
303 381 0.834612 AAGTTGGAACCCGTGAGTGA 59.165 50.000 0.00 0.00 0.00 3.41
304 382 0.106149 AGTTGGAACCCGTGAGTGAC 59.894 55.000 0.00 0.00 0.00 3.67
312 390 2.807045 CGTGAGTGACGGAGCTGC 60.807 66.667 0.00 0.00 44.85 5.25
313 391 2.340078 GTGAGTGACGGAGCTGCA 59.660 61.111 5.91 0.00 0.00 4.41
314 392 1.300931 GTGAGTGACGGAGCTGCAA 60.301 57.895 5.91 0.00 0.00 4.08
315 393 1.300931 TGAGTGACGGAGCTGCAAC 60.301 57.895 5.91 0.00 0.00 4.17
316 394 2.029844 GAGTGACGGAGCTGCAACC 61.030 63.158 5.91 4.03 0.00 3.77
317 395 2.280797 GTGACGGAGCTGCAACCA 60.281 61.111 5.91 0.00 0.00 3.67
318 396 1.672356 GTGACGGAGCTGCAACCAT 60.672 57.895 5.91 1.03 0.00 3.55
319 397 1.073025 TGACGGAGCTGCAACCATT 59.927 52.632 5.91 2.73 0.00 3.16
320 398 0.323302 TGACGGAGCTGCAACCATTA 59.677 50.000 5.91 0.00 0.00 1.90
321 399 1.009829 GACGGAGCTGCAACCATTAG 58.990 55.000 5.91 0.00 0.00 1.73
326 404 0.967380 AGCTGCAACCATTAGGGCAC 60.967 55.000 1.02 0.00 42.05 5.01
440 518 0.971447 GAACGGGCTAGGTGTCCTCT 60.971 60.000 0.00 0.00 38.58 3.69
502 581 2.504681 GGTTGAAGCATTGCGGCG 60.505 61.111 0.51 0.51 39.27 6.46
573 652 2.046285 GCGGTGGCCAGCTAACAAT 61.046 57.895 30.86 0.00 0.00 2.71
595 674 2.742372 CGGTTGGTCAGGGCTTCG 60.742 66.667 0.00 0.00 0.00 3.79
598 677 1.371558 GTTGGTCAGGGCTTCGAGT 59.628 57.895 0.00 0.00 0.00 4.18
602 681 2.604686 TCAGGGCTTCGAGTGGCT 60.605 61.111 12.31 0.00 0.00 4.75
620 699 4.445545 CGCGGCGGCTCAAAAGAC 62.446 66.667 15.84 0.00 36.88 3.01
622 701 2.556287 CGGCGGCTCAAAAGACAC 59.444 61.111 7.61 0.00 0.00 3.67
654 733 5.386958 AAGTAGAGATTAGTCAACGTGCA 57.613 39.130 0.00 0.00 0.00 4.57
655 734 4.987832 AGTAGAGATTAGTCAACGTGCAG 58.012 43.478 0.00 0.00 0.00 4.41
656 735 4.700692 AGTAGAGATTAGTCAACGTGCAGA 59.299 41.667 0.00 0.00 0.00 4.26
657 736 4.103365 AGAGATTAGTCAACGTGCAGAG 57.897 45.455 0.00 0.00 0.00 3.35
658 737 3.759086 AGAGATTAGTCAACGTGCAGAGA 59.241 43.478 0.00 0.00 0.00 3.10
659 738 3.839293 AGATTAGTCAACGTGCAGAGAC 58.161 45.455 0.00 0.00 0.00 3.36
660 739 3.255888 AGATTAGTCAACGTGCAGAGACA 59.744 43.478 9.52 0.00 33.31 3.41
705 792 0.030101 GAGAGGCTTCGTCGGAGATG 59.970 60.000 4.21 0.00 46.63 2.90
740 827 1.577922 GACGCGTGGACTGACTACA 59.422 57.895 20.70 0.00 0.00 2.74
780 873 0.389948 GGAGCGAACCTCGTGTGATT 60.390 55.000 0.00 0.00 42.81 2.57
812 905 3.365265 CCGGGAACAAGCAGTGCC 61.365 66.667 12.58 0.00 46.41 5.01
1014 1111 1.004277 CCTTCCGTCCTTCCCATTTCA 59.996 52.381 0.00 0.00 0.00 2.69
1061 1158 3.411351 CGCAACGTTAGTGCCGCT 61.411 61.111 0.00 0.00 0.00 5.52
1096 1193 0.045778 ACCCTAACCCTAGCCACCAT 59.954 55.000 0.00 0.00 0.00 3.55
1420 1530 1.891150 AGGTTTCCTGAATTGCAGCAG 59.109 47.619 0.00 6.38 43.50 4.24
1578 1700 5.459536 TGTTTGTAAATGCTTGCACCATA 57.540 34.783 0.00 0.00 0.00 2.74
1580 1702 5.925397 TGTTTGTAAATGCTTGCACCATAAG 59.075 36.000 0.00 0.00 0.00 1.73
1581 1703 5.720371 TTGTAAATGCTTGCACCATAAGT 57.280 34.783 0.00 0.00 0.00 2.24
1582 1704 5.309323 TGTAAATGCTTGCACCATAAGTC 57.691 39.130 0.00 0.00 0.00 3.01
1583 1705 3.874392 AAATGCTTGCACCATAAGTCC 57.126 42.857 0.00 0.00 0.00 3.85
1584 1706 2.814805 ATGCTTGCACCATAAGTCCT 57.185 45.000 0.00 0.00 0.00 3.85
1585 1707 3.931907 ATGCTTGCACCATAAGTCCTA 57.068 42.857 0.00 0.00 0.00 2.94
1586 1708 3.712016 TGCTTGCACCATAAGTCCTAA 57.288 42.857 0.00 0.00 0.00 2.69
1591 1713 4.422073 TGCACCATAAGTCCTAATCCTG 57.578 45.455 0.00 0.00 0.00 3.86
1601 1723 3.777522 AGTCCTAATCCTGAGGAACAAGG 59.222 47.826 16.79 16.79 44.77 3.61
1602 1724 3.519913 GTCCTAATCCTGAGGAACAAGGT 59.480 47.826 20.18 0.00 44.77 3.50
1617 1739 5.351948 AACAAGGTTGCATTACCAACTTT 57.648 34.783 10.18 1.49 43.15 2.66
1771 1904 6.064717 GGGATACTAAACAATGGCTTCATCT 58.935 40.000 0.00 0.00 0.00 2.90
1823 1960 7.730364 TTCAGAAGATTTGGAGTTAAGTGAC 57.270 36.000 0.00 0.00 0.00 3.67
1834 1971 7.159322 TGGAGTTAAGTGACTAAGATCAGAC 57.841 40.000 0.00 0.00 0.00 3.51
2024 2168 3.625764 TGTAGCACTTTGTCAGTTTGTCC 59.374 43.478 0.00 0.00 30.92 4.02
2048 2235 4.689071 TGCGTACTGTATATTTCACCCAG 58.311 43.478 0.00 0.00 0.00 4.45
2082 2269 7.229506 CCCAAGTCCCTTGTTTCTGATTATATC 59.770 40.741 3.53 0.00 39.58 1.63
2382 2569 8.156820 TCCCATTTGATCCATAGTAGTGTAATG 58.843 37.037 0.00 0.00 0.00 1.90
2549 2736 6.460261 GGTTATATTTTCAGAGCAAAGCCCTC 60.460 42.308 0.00 0.00 0.00 4.30
2587 2775 7.201539 GGGCGTGTTTACTTTTTGTTACAATTT 60.202 33.333 0.00 0.00 0.00 1.82
2588 2776 7.632897 GGCGTGTTTACTTTTTGTTACAATTTG 59.367 33.333 0.00 0.00 0.00 2.32
2589 2777 8.163516 GCGTGTTTACTTTTTGTTACAATTTGT 58.836 29.630 7.30 7.30 0.00 2.83
2613 2801 8.791675 TGTACATTATTTCATTGCTTCACTTGA 58.208 29.630 0.00 0.00 0.00 3.02
2898 3086 6.410540 TGATAGTTTGCTTTGTTTTTGGGTT 58.589 32.000 0.00 0.00 0.00 4.11
3023 3220 3.859411 ACTAACTGTGAGCTAGCACTC 57.141 47.619 18.83 12.36 39.49 3.51
3199 3397 6.646267 AGTAATCTCCTATTTTTGCACCGTA 58.354 36.000 0.00 0.00 0.00 4.02
4497 4745 0.106318 GCCCCTGAAGAAGATGGCAT 60.106 55.000 0.00 0.00 41.08 4.40
4498 4746 1.688772 CCCCTGAAGAAGATGGCATG 58.311 55.000 3.81 0.00 0.00 4.06
4499 4747 1.688772 CCCTGAAGAAGATGGCATGG 58.311 55.000 3.81 0.00 0.00 3.66
4500 4748 1.030457 CCTGAAGAAGATGGCATGGC 58.970 55.000 13.29 13.29 0.00 4.40
4501 4749 0.661552 CTGAAGAAGATGGCATGGCG 59.338 55.000 15.27 0.00 0.00 5.69
4502 4750 0.749091 TGAAGAAGATGGCATGGCGG 60.749 55.000 15.27 0.00 0.00 6.13
4503 4751 1.450531 GAAGAAGATGGCATGGCGGG 61.451 60.000 15.27 0.00 0.00 6.13
4504 4752 3.599704 GAAGATGGCATGGCGGGC 61.600 66.667 15.27 6.26 0.00 6.13
4509 4757 4.675161 TGGCATGGCGGGCAAAGA 62.675 61.111 15.27 0.00 40.73 2.52
4510 4758 3.381136 GGCATGGCGGGCAAAGAA 61.381 61.111 8.78 0.00 0.00 2.52
4511 4759 2.182537 GCATGGCGGGCAAAGAAG 59.817 61.111 8.78 0.00 0.00 2.85
4512 4760 2.887360 CATGGCGGGCAAAGAAGG 59.113 61.111 8.78 0.00 0.00 3.46
4513 4761 1.978617 CATGGCGGGCAAAGAAGGT 60.979 57.895 8.78 0.00 0.00 3.50
4514 4762 0.679640 CATGGCGGGCAAAGAAGGTA 60.680 55.000 8.78 0.00 0.00 3.08
4515 4763 0.679960 ATGGCGGGCAAAGAAGGTAC 60.680 55.000 8.78 0.00 0.00 3.34
4516 4764 2.044555 GGCGGGCAAAGAAGGTACC 61.045 63.158 2.73 2.73 0.00 3.34
4517 4765 1.302993 GCGGGCAAAGAAGGTACCA 60.303 57.895 15.94 0.00 0.00 3.25
4518 4766 0.891904 GCGGGCAAAGAAGGTACCAA 60.892 55.000 15.94 0.00 0.00 3.67
4519 4767 1.165270 CGGGCAAAGAAGGTACCAAG 58.835 55.000 15.94 0.00 0.00 3.61
4520 4768 1.271163 CGGGCAAAGAAGGTACCAAGA 60.271 52.381 15.94 0.00 0.00 3.02
4521 4769 2.160205 GGGCAAAGAAGGTACCAAGAC 58.840 52.381 15.94 2.14 0.00 3.01
4522 4770 1.804748 GGCAAAGAAGGTACCAAGACG 59.195 52.381 15.94 0.00 0.00 4.18
4523 4771 1.804748 GCAAAGAAGGTACCAAGACGG 59.195 52.381 15.94 0.27 42.50 4.79
4524 4772 2.549349 GCAAAGAAGGTACCAAGACGGA 60.549 50.000 15.94 0.00 38.63 4.69
4525 4773 3.735591 CAAAGAAGGTACCAAGACGGAA 58.264 45.455 15.94 0.00 38.63 4.30
4526 4774 3.679824 AAGAAGGTACCAAGACGGAAG 57.320 47.619 15.94 0.00 38.63 3.46
4527 4775 2.885616 AGAAGGTACCAAGACGGAAGA 58.114 47.619 15.94 0.00 38.63 2.87
4528 4776 3.442076 AGAAGGTACCAAGACGGAAGAT 58.558 45.455 15.94 0.00 38.63 2.40
4529 4777 3.195825 AGAAGGTACCAAGACGGAAGATG 59.804 47.826 15.94 0.00 38.63 2.90
4530 4778 2.816411 AGGTACCAAGACGGAAGATGA 58.184 47.619 15.94 0.00 38.63 2.92
4531 4779 2.496470 AGGTACCAAGACGGAAGATGAC 59.504 50.000 15.94 0.00 38.63 3.06
4532 4780 2.232941 GGTACCAAGACGGAAGATGACA 59.767 50.000 7.15 0.00 38.63 3.58
4533 4781 3.118738 GGTACCAAGACGGAAGATGACAT 60.119 47.826 7.15 0.00 38.63 3.06
4534 4782 2.977914 ACCAAGACGGAAGATGACATG 58.022 47.619 0.00 0.00 38.63 3.21
4535 4783 2.283298 CCAAGACGGAAGATGACATGG 58.717 52.381 0.00 0.00 36.56 3.66
4536 4784 1.667724 CAAGACGGAAGATGACATGGC 59.332 52.381 0.00 0.00 0.00 4.40
4537 4785 0.179100 AGACGGAAGATGACATGGCG 60.179 55.000 0.00 0.00 0.00 5.69
4538 4786 1.153369 ACGGAAGATGACATGGCGG 60.153 57.895 0.00 0.00 0.00 6.13
4539 4787 1.889105 CGGAAGATGACATGGCGGG 60.889 63.158 0.00 0.00 0.00 6.13
4540 4788 2.189499 GGAAGATGACATGGCGGGC 61.189 63.158 0.00 0.00 0.00 6.13
4541 4789 1.451927 GAAGATGACATGGCGGGCA 60.452 57.895 6.74 6.74 0.00 5.36
4542 4790 0.820891 GAAGATGACATGGCGGGCAT 60.821 55.000 11.73 11.73 0.00 4.40
4543 4791 0.473755 AAGATGACATGGCGGGCATA 59.526 50.000 17.25 2.09 0.00 3.14
4544 4792 0.035881 AGATGACATGGCGGGCATAG 59.964 55.000 17.25 13.36 0.00 2.23
4545 4793 0.035317 GATGACATGGCGGGCATAGA 59.965 55.000 17.25 4.38 0.00 1.98
4546 4794 0.473755 ATGACATGGCGGGCATAGAA 59.526 50.000 17.25 5.76 0.00 2.10
4547 4795 0.179048 TGACATGGCGGGCATAGAAG 60.179 55.000 17.25 7.36 0.00 2.85
4548 4796 0.886490 GACATGGCGGGCATAGAAGG 60.886 60.000 17.25 6.98 0.00 3.46
4549 4797 1.149174 CATGGCGGGCATAGAAGGT 59.851 57.895 17.25 0.00 0.00 3.50
4550 4798 0.396435 CATGGCGGGCATAGAAGGTA 59.604 55.000 17.25 0.00 0.00 3.08
4551 4799 0.396811 ATGGCGGGCATAGAAGGTAC 59.603 55.000 16.13 0.00 0.00 3.34
4552 4800 1.070957 GGCGGGCATAGAAGGTACC 59.929 63.158 2.73 2.73 0.00 3.34
4553 4801 1.692173 GGCGGGCATAGAAGGTACCA 61.692 60.000 15.94 0.00 0.00 3.25
4554 4802 0.396811 GCGGGCATAGAAGGTACCAT 59.603 55.000 15.94 0.42 0.00 3.55
4555 4803 1.878102 GCGGGCATAGAAGGTACCATG 60.878 57.143 15.94 10.07 0.00 3.66
4556 4804 1.691976 CGGGCATAGAAGGTACCATGA 59.308 52.381 15.94 0.00 0.00 3.07
4557 4805 2.548067 CGGGCATAGAAGGTACCATGAC 60.548 54.545 15.94 10.97 0.00 3.06
4558 4806 2.548067 GGGCATAGAAGGTACCATGACG 60.548 54.545 15.94 0.00 0.00 4.35
4559 4807 2.548067 GGCATAGAAGGTACCATGACGG 60.548 54.545 15.94 0.27 42.50 4.79
4560 4808 2.364324 GCATAGAAGGTACCATGACGGA 59.636 50.000 15.94 0.00 38.63 4.69
4561 4809 3.181469 GCATAGAAGGTACCATGACGGAA 60.181 47.826 15.94 0.00 38.63 4.30
4562 4810 4.621991 CATAGAAGGTACCATGACGGAAG 58.378 47.826 15.94 0.00 38.63 3.46
4563 4811 2.816411 AGAAGGTACCATGACGGAAGA 58.184 47.619 15.94 0.00 38.63 2.87
4564 4812 3.375699 AGAAGGTACCATGACGGAAGAT 58.624 45.455 15.94 0.00 38.63 2.40
4565 4813 3.133003 AGAAGGTACCATGACGGAAGATG 59.867 47.826 15.94 0.00 38.63 2.90
4566 4814 2.747177 AGGTACCATGACGGAAGATGA 58.253 47.619 15.94 0.00 38.63 2.92
4567 4815 2.431057 AGGTACCATGACGGAAGATGAC 59.569 50.000 15.94 0.00 38.63 3.06
4568 4816 2.167693 GGTACCATGACGGAAGATGACA 59.832 50.000 7.15 0.00 38.63 3.58
4590 4838 0.396811 GCGGGCATAGAAGGTACCAT 59.603 55.000 15.94 0.42 0.00 3.55
4614 4934 3.329542 AAGATGACACGGCGGGCAT 62.330 57.895 10.14 14.32 0.00 4.40
4624 4944 1.070957 GGCGGGCATAGAAGGTACC 59.929 63.158 2.73 2.73 0.00 3.34
4626 4946 0.396811 GCGGGCATAGAAGGTACCAT 59.603 55.000 15.94 0.42 0.00 3.55
4641 4961 2.386661 ACCATGACGGAAGATGACAC 57.613 50.000 0.00 0.00 38.63 3.67
4656 4976 3.737172 CACGGCGGGCAAAGAAGG 61.737 66.667 13.24 0.00 0.00 3.46
4687 5238 3.053291 GATGACACGGCGGGCAAA 61.053 61.111 10.14 0.00 0.00 3.68
4688 5239 3.039202 GATGACACGGCGGGCAAAG 62.039 63.158 10.14 0.00 0.00 2.77
4689 5240 3.545124 ATGACACGGCGGGCAAAGA 62.545 57.895 10.14 0.00 0.00 2.52
4690 5241 2.975799 GACACGGCGGGCAAAGAA 60.976 61.111 10.14 0.00 0.00 2.52
4691 5242 2.966309 GACACGGCGGGCAAAGAAG 61.966 63.158 10.14 0.00 0.00 2.85
4692 5243 3.737172 CACGGCGGGCAAAGAAGG 61.737 66.667 13.24 0.00 0.00 3.46
4693 5244 4.265056 ACGGCGGGCAAAGAAGGT 62.265 61.111 13.24 0.00 0.00 3.50
4959 5510 1.950828 ATTCTCGATTGCAGCAGGAG 58.049 50.000 11.90 11.90 0.00 3.69
4960 5511 0.107993 TTCTCGATTGCAGCAGGAGG 60.108 55.000 15.99 0.80 0.00 4.30
4961 5512 2.124983 TCGATTGCAGCAGGAGGC 60.125 61.111 0.00 0.00 45.30 4.70
4962 5513 3.207669 CGATTGCAGCAGGAGGCC 61.208 66.667 0.00 0.00 46.50 5.19
4963 5514 2.832201 GATTGCAGCAGGAGGCCC 60.832 66.667 0.00 0.00 46.50 5.80
4964 5515 4.453892 ATTGCAGCAGGAGGCCCC 62.454 66.667 0.00 0.00 46.50 5.80
4972 5523 4.160818 AGGAGGCCCCTGAAGAAG 57.839 61.111 11.62 0.00 45.61 2.85
4973 5524 1.476165 AGGAGGCCCCTGAAGAAGA 59.524 57.895 11.62 0.00 45.61 2.87
4974 5525 0.045469 AGGAGGCCCCTGAAGAAGAT 59.955 55.000 11.62 0.00 45.61 2.40
4975 5526 0.182299 GGAGGCCCCTGAAGAAGATG 59.818 60.000 0.00 0.00 0.00 2.90
4976 5527 0.182299 GAGGCCCCTGAAGAAGATGG 59.818 60.000 0.00 0.00 0.00 3.51
4977 5528 1.454663 GGCCCCTGAAGAAGATGGC 60.455 63.158 0.00 0.00 40.83 4.40
4978 5529 1.304282 GCCCCTGAAGAAGATGGCA 59.696 57.895 0.00 0.00 41.08 4.92
4979 5530 0.106318 GCCCCTGAAGAAGATGGCAT 60.106 55.000 0.00 0.00 41.08 4.40
4980 5531 1.688772 CCCCTGAAGAAGATGGCATG 58.311 55.000 3.81 0.00 0.00 4.06
4981 5532 1.688772 CCCTGAAGAAGATGGCATGG 58.311 55.000 3.81 0.00 0.00 3.66
4982 5533 1.030457 CCTGAAGAAGATGGCATGGC 58.970 55.000 13.29 13.29 0.00 4.40
4983 5534 0.661552 CTGAAGAAGATGGCATGGCG 59.338 55.000 15.27 0.00 0.00 5.69
4984 5535 0.749091 TGAAGAAGATGGCATGGCGG 60.749 55.000 15.27 0.00 0.00 6.13
4985 5536 1.450531 GAAGAAGATGGCATGGCGGG 61.451 60.000 15.27 0.00 0.00 6.13
4986 5537 3.599704 GAAGATGGCATGGCGGGC 61.600 66.667 15.27 6.26 0.00 6.13
5049 5600 2.431057 AGGTACCATGACGGAAGATGAC 59.569 50.000 15.94 0.00 38.63 3.06
5050 5601 2.167693 GGTACCATGACGGAAGATGACA 59.832 50.000 7.15 0.00 38.63 3.58
5051 5602 3.181465 GGTACCATGACGGAAGATGACAT 60.181 47.826 7.15 0.00 38.63 3.06
5052 5603 2.910199 ACCATGACGGAAGATGACATG 58.090 47.619 0.00 0.00 38.63 3.21
5054 5605 1.600957 CATGACGGAAGATGACATGGC 59.399 52.381 0.00 0.00 35.96 4.40
5055 5606 0.460109 TGACGGAAGATGACATGGCG 60.460 55.000 0.00 0.00 0.00 5.69
5056 5607 1.153369 ACGGAAGATGACATGGCGG 60.153 57.895 0.00 0.00 0.00 6.13
5057 5608 1.889105 CGGAAGATGACATGGCGGG 60.889 63.158 0.00 0.00 0.00 6.13
5058 5609 2.189499 GGAAGATGACATGGCGGGC 61.189 63.158 0.00 0.00 0.00 6.13
5059 5610 1.451927 GAAGATGACATGGCGGGCA 60.452 57.895 6.74 6.74 0.00 5.36
5060 5611 0.820891 GAAGATGACATGGCGGGCAT 60.821 55.000 11.73 11.73 0.00 4.40
5061 5612 0.473755 AAGATGACATGGCGGGCATA 59.526 50.000 17.25 2.09 0.00 3.14
5062 5613 0.035881 AGATGACATGGCGGGCATAG 59.964 55.000 17.25 13.36 0.00 2.23
5063 5614 0.035317 GATGACATGGCGGGCATAGA 59.965 55.000 17.25 4.38 0.00 1.98
5064 5615 0.473755 ATGACATGGCGGGCATAGAA 59.526 50.000 17.25 5.76 0.00 2.10
5065 5616 0.179048 TGACATGGCGGGCATAGAAG 60.179 55.000 17.25 7.36 0.00 2.85
5066 5617 0.886490 GACATGGCGGGCATAGAAGG 60.886 60.000 17.25 6.98 0.00 3.46
5067 5618 1.149174 CATGGCGGGCATAGAAGGT 59.851 57.895 17.25 0.00 0.00 3.50
5068 5619 0.396435 CATGGCGGGCATAGAAGGTA 59.604 55.000 17.25 0.00 0.00 3.08
5069 5620 0.396811 ATGGCGGGCATAGAAGGTAC 59.603 55.000 16.13 0.00 0.00 3.34
5070 5621 1.070957 GGCGGGCATAGAAGGTACC 59.929 63.158 2.73 2.73 0.00 3.34
5071 5622 1.692173 GGCGGGCATAGAAGGTACCA 61.692 60.000 15.94 0.00 0.00 3.25
5072 5623 0.179468 GCGGGCATAGAAGGTACCAA 59.821 55.000 15.94 0.00 0.00 3.67
5073 5624 1.810412 GCGGGCATAGAAGGTACCAAG 60.810 57.143 15.94 0.00 0.00 3.61
5074 5625 1.760613 CGGGCATAGAAGGTACCAAGA 59.239 52.381 15.94 0.00 0.00 3.02
5075 5626 2.483188 CGGGCATAGAAGGTACCAAGAC 60.483 54.545 15.94 2.14 0.00 3.01
5076 5627 2.483188 GGGCATAGAAGGTACCAAGACG 60.483 54.545 15.94 0.00 0.00 4.18
5077 5628 2.483188 GGCATAGAAGGTACCAAGACGG 60.483 54.545 15.94 0.27 42.50 4.79
5078 5629 2.429610 GCATAGAAGGTACCAAGACGGA 59.570 50.000 15.94 0.00 38.63 4.69
5079 5630 3.118884 GCATAGAAGGTACCAAGACGGAA 60.119 47.826 15.94 0.00 38.63 4.30
5080 5631 4.683832 CATAGAAGGTACCAAGACGGAAG 58.316 47.826 15.94 0.00 38.63 3.46
5081 5632 2.885616 AGAAGGTACCAAGACGGAAGA 58.114 47.619 15.94 0.00 38.63 2.87
5082 5633 3.442076 AGAAGGTACCAAGACGGAAGAT 58.558 45.455 15.94 0.00 38.63 2.40
5083 5634 3.195825 AGAAGGTACCAAGACGGAAGATG 59.804 47.826 15.94 0.00 38.63 2.90
5084 5635 2.816411 AGGTACCAAGACGGAAGATGA 58.184 47.619 15.94 0.00 38.63 2.92
5085 5636 2.496470 AGGTACCAAGACGGAAGATGAC 59.504 50.000 15.94 0.00 38.63 3.06
5086 5637 2.232941 GGTACCAAGACGGAAGATGACA 59.767 50.000 7.15 0.00 38.63 3.58
5087 5638 2.457366 ACCAAGACGGAAGATGACAC 57.543 50.000 0.00 0.00 38.63 3.67
5088 5639 1.336887 ACCAAGACGGAAGATGACACG 60.337 52.381 0.00 0.00 38.63 4.49
5089 5640 1.350193 CAAGACGGAAGATGACACGG 58.650 55.000 0.00 0.00 0.00 4.94
5090 5641 0.389948 AAGACGGAAGATGACACGGC 60.390 55.000 0.00 0.00 33.82 5.68
5091 5642 2.126071 ACGGAAGATGACACGGCG 60.126 61.111 4.80 4.80 0.00 6.46
5092 5643 2.885644 CGGAAGATGACACGGCGG 60.886 66.667 13.24 2.35 0.00 6.13
5093 5644 2.511600 GGAAGATGACACGGCGGG 60.512 66.667 8.04 8.04 0.00 6.13
5094 5645 3.195698 GAAGATGACACGGCGGGC 61.196 66.667 10.14 2.13 0.00 6.13
5095 5646 3.950794 GAAGATGACACGGCGGGCA 62.951 63.158 10.14 9.19 0.00 5.36
5096 5647 3.545124 AAGATGACACGGCGGGCAA 62.545 57.895 10.14 0.00 0.00 4.52
5097 5648 3.053291 GATGACACGGCGGGCAAA 61.053 61.111 10.14 0.00 0.00 3.68
5098 5649 3.039202 GATGACACGGCGGGCAAAG 62.039 63.158 10.14 0.00 0.00 2.77
5099 5650 3.545124 ATGACACGGCGGGCAAAGA 62.545 57.895 10.14 0.00 0.00 2.52
5100 5651 2.975799 GACACGGCGGGCAAAGAA 60.976 61.111 10.14 0.00 0.00 2.52
5219 5806 5.741425 CGACGAATAAATCAGTGCATGAAT 58.259 37.500 0.00 0.00 42.53 2.57
5223 5810 6.095300 ACGAATAAATCAGTGCATGAATGGAA 59.905 34.615 0.00 0.00 42.53 3.53
5235 5822 5.716228 TGCATGAATGGAAAGTAGAAATGGT 59.284 36.000 0.00 0.00 0.00 3.55
5273 5860 3.007635 CCCCGCAGTAGAAACTTAAAGG 58.992 50.000 0.00 0.00 31.97 3.11
5429 6020 5.691896 ACCTTATTAATGTAAGAGTGCCCC 58.308 41.667 0.00 0.00 34.34 5.80
5431 6022 5.163088 CCTTATTAATGTAAGAGTGCCCCCT 60.163 44.000 0.00 0.00 34.34 4.79
5432 6023 3.926058 TTAATGTAAGAGTGCCCCCTC 57.074 47.619 0.00 0.00 0.00 4.30
5444 6035 1.203001 TGCCCCCTCGAAAATTTCACT 60.203 47.619 6.53 0.00 0.00 3.41
5457 6048 6.678245 CGAAAATTTCACTGTTTTTGCTTGAC 59.322 34.615 6.53 0.00 0.00 3.18
5509 6100 3.068590 AGTGTTGGCATGGAAGAAACTTG 59.931 43.478 0.00 0.00 0.00 3.16
5532 6123 7.540474 TGTGTAGAGATGTCTTTCTTAACCT 57.460 36.000 0.00 0.00 33.84 3.50
5534 6125 9.085645 TGTGTAGAGATGTCTTTCTTAACCTTA 57.914 33.333 0.00 0.00 33.84 2.69
5539 6130 5.875359 AGATGTCTTTCTTAACCTTAAGGCG 59.125 40.000 21.92 7.79 40.35 5.52
5678 6310 4.903054 TGAATCTATGATGCAGGTGGATC 58.097 43.478 4.61 4.61 42.33 3.36
5708 6340 0.109597 GTTGCGAGCCCTGTTGAATG 60.110 55.000 0.00 0.00 0.00 2.67
5751 6383 3.050619 GGAATGCTTAGACCATACGACG 58.949 50.000 0.00 0.00 0.00 5.12
5939 6744 3.297620 CGGGGCAAAAGCTGTGCT 61.298 61.111 19.06 0.00 42.56 4.40
5966 6818 3.657350 CGGTGGGGTGTTGGGGAT 61.657 66.667 0.00 0.00 0.00 3.85
6011 6863 1.928503 GCGGAAAATACGGTCGATTCA 59.071 47.619 0.00 0.00 0.00 2.57
6018 6870 4.316205 AATACGGTCGATTCACAGCATA 57.684 40.909 0.00 0.00 0.00 3.14
6173 7034 4.468510 TGTCCTATCAGATAACCACGGTTT 59.531 41.667 6.80 0.00 39.31 3.27
6216 7077 1.338655 CCACGGTTTTTACAAGGTGGG 59.661 52.381 0.16 0.00 40.86 4.61
6220 7081 2.894765 CGGTTTTTACAAGGTGGGGAAT 59.105 45.455 0.00 0.00 0.00 3.01
6240 7102 2.150809 CTGCACACGCACGACTTGAG 62.151 60.000 0.00 0.00 45.36 3.02
6250 7112 2.223249 GCACGACTTGAGAAAACTTGCA 60.223 45.455 0.00 0.00 0.00 4.08
6267 7129 2.124901 ACACACACACACACGGGG 60.125 61.111 0.00 0.00 0.00 5.73
6272 7134 2.826287 CACACACACGGGGCACAA 60.826 61.111 0.00 0.00 0.00 3.33
6299 8417 1.164041 ACGGAACTCAAAGGCAACCG 61.164 55.000 0.00 0.00 43.61 4.44
6300 8418 1.164041 CGGAACTCAAAGGCAACCGT 61.164 55.000 0.00 0.00 35.21 4.83
6301 8419 0.591659 GGAACTCAAAGGCAACCGTC 59.408 55.000 0.00 0.00 37.17 4.79
6302 8420 0.234884 GAACTCAAAGGCAACCGTCG 59.765 55.000 0.00 0.00 37.17 5.12
6303 8421 0.463116 AACTCAAAGGCAACCGTCGT 60.463 50.000 0.00 0.00 37.17 4.34
6306 8424 3.284449 AAAGGCAACCGTCGTGGC 61.284 61.111 1.64 1.64 43.94 5.01
6389 8513 3.304996 CCACTGCTACCATCAGTCTATCG 60.305 52.174 0.00 0.00 42.38 2.92
6403 8527 1.133637 TCTATCGCCTCTGCTCCTTCT 60.134 52.381 0.00 0.00 34.43 2.85
6440 8564 5.604231 CAGATAAGGCTATATATCCCCAGCA 59.396 44.000 7.37 0.00 35.69 4.41
6472 8596 1.457455 CTCCTCAGCCTCCCTCTCC 60.457 68.421 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 129 4.766404 AATTTTCCTACAACTGGCTTCG 57.234 40.909 0.00 0.00 0.00 3.79
107 151 1.988107 TGGTTTTCCTGGATCAGCTCT 59.012 47.619 0.00 0.00 41.38 4.09
109 153 2.376518 TCTTGGTTTTCCTGGATCAGCT 59.623 45.455 0.00 0.00 41.38 4.24
150 194 3.188786 GCGGTGCTGGAACTAGCG 61.189 66.667 5.77 0.00 46.61 4.26
151 195 1.811679 GAGCGGTGCTGGAACTAGC 60.812 63.158 0.00 3.29 39.88 3.42
173 217 1.421410 CGAGTTATGCTGTGACCGGC 61.421 60.000 0.00 0.00 43.67 6.13
175 219 0.458543 AGCGAGTTATGCTGTGACCG 60.459 55.000 0.00 0.00 42.14 4.79
179 223 2.464865 GTCCTAGCGAGTTATGCTGTG 58.535 52.381 0.00 0.00 43.85 3.66
180 224 1.065701 CGTCCTAGCGAGTTATGCTGT 59.934 52.381 0.00 0.00 43.85 4.40
191 269 1.261089 GAGTGCTACTACGTCCTAGCG 59.739 57.143 15.86 0.00 38.61 4.26
208 286 1.541310 TTCCAACTCCGGCATCGAGT 61.541 55.000 0.00 0.00 39.00 4.18
210 288 1.079405 GTTCCAACTCCGGCATCGA 60.079 57.895 0.00 0.00 39.00 3.59
216 294 2.359975 GGCTGGTTCCAACTCCGG 60.360 66.667 0.00 0.00 0.00 5.14
225 303 1.298014 CTCCTCCACTGGCTGGTTC 59.702 63.158 6.78 0.00 41.52 3.62
230 308 3.715097 GCAGCTCCTCCACTGGCT 61.715 66.667 0.00 0.00 34.38 4.75
244 322 0.531532 CTACTCCCTGGCGATTGCAG 60.532 60.000 7.38 2.52 45.35 4.41
249 327 0.478942 TAGCTCTACTCCCTGGCGAT 59.521 55.000 0.00 0.00 0.00 4.58
250 328 0.465824 GTAGCTCTACTCCCTGGCGA 60.466 60.000 0.00 0.00 33.45 5.54
254 332 1.883275 CGGATGTAGCTCTACTCCCTG 59.117 57.143 8.34 0.39 37.00 4.45
268 346 0.110486 ACTTTGCCCTTGTCGGATGT 59.890 50.000 0.00 0.00 33.16 3.06
275 353 1.119684 GGTTCCAACTTTGCCCTTGT 58.880 50.000 0.00 0.00 0.00 3.16
297 375 1.300931 GTTGCAGCTCCGTCACTCA 60.301 57.895 0.00 0.00 0.00 3.41
302 380 1.009829 CTAATGGTTGCAGCTCCGTC 58.990 55.000 0.00 0.00 0.00 4.79
303 381 0.392998 CCTAATGGTTGCAGCTCCGT 60.393 55.000 0.00 0.00 0.00 4.69
304 382 1.097547 CCCTAATGGTTGCAGCTCCG 61.098 60.000 0.00 0.00 0.00 4.63
305 383 1.387295 GCCCTAATGGTTGCAGCTCC 61.387 60.000 0.00 0.00 36.04 4.70
306 384 0.680921 TGCCCTAATGGTTGCAGCTC 60.681 55.000 0.00 0.00 36.04 4.09
307 385 0.967380 GTGCCCTAATGGTTGCAGCT 60.967 55.000 0.00 0.00 32.54 4.24
308 386 1.250154 TGTGCCCTAATGGTTGCAGC 61.250 55.000 0.00 0.00 32.54 5.25
309 387 0.813184 CTGTGCCCTAATGGTTGCAG 59.187 55.000 0.00 0.00 32.54 4.41
310 388 1.250154 GCTGTGCCCTAATGGTTGCA 61.250 55.000 0.00 0.00 36.04 4.08
311 389 0.967380 AGCTGTGCCCTAATGGTTGC 60.967 55.000 0.00 0.00 36.04 4.17
312 390 0.813184 CAGCTGTGCCCTAATGGTTG 59.187 55.000 5.25 0.00 36.04 3.77
313 391 0.967380 GCAGCTGTGCCCTAATGGTT 60.967 55.000 16.64 0.00 44.72 3.67
314 392 1.379044 GCAGCTGTGCCCTAATGGT 60.379 57.895 16.64 0.00 44.72 3.55
315 393 3.518003 GCAGCTGTGCCCTAATGG 58.482 61.111 16.64 0.00 44.72 3.16
326 404 1.213537 CCCAAAACGGATGCAGCTG 59.786 57.895 9.77 9.77 36.56 4.24
408 486 3.423154 CGTTCCAGCTTCGCCACC 61.423 66.667 0.00 0.00 0.00 4.61
502 581 4.164252 CGGAGCTACAACCACGAC 57.836 61.111 0.00 0.00 0.00 4.34
558 637 1.680338 CCCTATTGTTAGCTGGCCAC 58.320 55.000 0.00 0.00 0.00 5.01
564 643 1.408266 CCAACCGCCCTATTGTTAGCT 60.408 52.381 0.00 0.00 0.00 3.32
573 652 3.006728 CCCTGACCAACCGCCCTA 61.007 66.667 0.00 0.00 0.00 3.53
602 681 4.673298 TCTTTTGAGCCGCCGCGA 62.673 61.111 15.93 0.00 41.18 5.87
620 699 3.510388 TCTCTACTTCGCCAATCTGTG 57.490 47.619 0.00 0.00 0.00 3.66
622 701 5.837437 ACTAATCTCTACTTCGCCAATCTG 58.163 41.667 0.00 0.00 0.00 2.90
654 733 5.395768 CGTTTTCTTATCTCCCCATGTCTCT 60.396 44.000 0.00 0.00 0.00 3.10
655 734 4.811557 CGTTTTCTTATCTCCCCATGTCTC 59.188 45.833 0.00 0.00 0.00 3.36
656 735 4.469945 TCGTTTTCTTATCTCCCCATGTCT 59.530 41.667 0.00 0.00 0.00 3.41
657 736 4.766375 TCGTTTTCTTATCTCCCCATGTC 58.234 43.478 0.00 0.00 0.00 3.06
658 737 4.225267 ACTCGTTTTCTTATCTCCCCATGT 59.775 41.667 0.00 0.00 0.00 3.21
659 738 4.572389 CACTCGTTTTCTTATCTCCCCATG 59.428 45.833 0.00 0.00 0.00 3.66
660 739 4.384208 CCACTCGTTTTCTTATCTCCCCAT 60.384 45.833 0.00 0.00 0.00 4.00
705 792 2.287129 GCGTCCCTTATCTCTCGTTCTC 60.287 54.545 0.00 0.00 0.00 2.87
740 827 0.393077 GCATACTCGGTAGCCACCAT 59.607 55.000 1.25 0.00 46.14 3.55
766 854 3.678072 TGATCGAAAATCACACGAGGTTC 59.322 43.478 0.00 0.00 39.31 3.62
780 873 2.183300 CGGGCCGTCTGATCGAAA 59.817 61.111 19.97 0.00 0.00 3.46
803 896 1.884579 CTGATCAACAAGGCACTGCTT 59.115 47.619 0.00 0.00 40.86 3.91
812 905 1.019673 CGGGCCATCTGATCAACAAG 58.980 55.000 4.39 0.00 0.00 3.16
1061 1158 3.327404 GTTTCGCAGGGAGGGGGA 61.327 66.667 0.00 0.00 0.00 4.81
1389 1499 2.449464 CAGGAAACCTGCCATTCATCA 58.551 47.619 4.84 0.00 45.13 3.07
1420 1530 5.444481 GCTCACAAATGTCACACACAAAAAC 60.444 40.000 0.00 0.00 38.97 2.43
1555 1677 4.333913 TGGTGCAAGCATTTACAAACAT 57.666 36.364 0.00 0.00 40.88 2.71
1578 1700 4.226168 CCTTGTTCCTCAGGATTAGGACTT 59.774 45.833 9.70 0.00 42.89 3.01
1580 1702 3.519913 ACCTTGTTCCTCAGGATTAGGAC 59.480 47.826 18.67 4.66 42.89 3.85
1581 1703 3.803340 ACCTTGTTCCTCAGGATTAGGA 58.197 45.455 18.67 0.00 41.47 2.94
1582 1704 4.265073 CAACCTTGTTCCTCAGGATTAGG 58.735 47.826 12.63 12.63 33.20 2.69
1583 1705 3.691609 GCAACCTTGTTCCTCAGGATTAG 59.308 47.826 0.00 0.00 0.00 1.73
1584 1706 3.073798 TGCAACCTTGTTCCTCAGGATTA 59.926 43.478 0.00 0.00 0.00 1.75
1585 1707 2.158475 TGCAACCTTGTTCCTCAGGATT 60.158 45.455 0.00 0.00 0.00 3.01
1586 1708 1.425066 TGCAACCTTGTTCCTCAGGAT 59.575 47.619 0.00 0.00 0.00 3.24
1591 1713 3.153919 TGGTAATGCAACCTTGTTCCTC 58.846 45.455 8.97 0.00 40.44 3.71
1617 1739 5.778862 TGTAATGACTTCTCAACATGACGA 58.221 37.500 0.00 0.00 30.44 4.20
1771 1904 5.376625 AGAAGCATGGTCTGTAACTTTGAA 58.623 37.500 0.00 0.00 0.00 2.69
1817 1954 6.096036 CGTGATTGTCTGATCTTAGTCACTT 58.904 40.000 0.00 0.00 34.22 3.16
1823 1960 5.863935 TGAACACGTGATTGTCTGATCTTAG 59.136 40.000 25.01 0.00 0.00 2.18
1834 1971 6.372981 TCATTGAAGATTGAACACGTGATTG 58.627 36.000 25.01 1.32 0.00 2.67
1880 2024 8.733458 CATTGATTCAGATGAAACTGGTTCTTA 58.267 33.333 7.02 0.00 37.61 2.10
2024 2168 5.053811 TGGGTGAAATATACAGTACGCATG 58.946 41.667 0.00 0.00 0.00 4.06
2082 2269 7.247019 TGAATCGAAGAGCTATGATAGATTCG 58.753 38.462 19.69 19.69 43.63 3.34
2382 2569 0.652592 GTGCGCACAGATACCATGTC 59.347 55.000 34.52 2.48 0.00 3.06
2549 2736 2.582728 ACACGCCCATTATGCATTTG 57.417 45.000 3.54 3.23 0.00 2.32
2587 2775 8.791675 TCAAGTGAAGCAATGAAATAATGTACA 58.208 29.630 0.00 0.00 0.00 2.90
2588 2776 9.624697 TTCAAGTGAAGCAATGAAATAATGTAC 57.375 29.630 0.00 0.00 0.00 2.90
2613 2801 9.777297 ACAAAGCAGTTCCAATATTAACAATTT 57.223 25.926 4.37 0.58 0.00 1.82
2803 2991 7.213178 ACTCAATACAATAGTTCTGGGGATT 57.787 36.000 0.00 0.00 0.00 3.01
2898 3086 5.303971 CCTTGCATGTTTTATTGAACCCAA 58.696 37.500 0.00 0.00 36.61 4.12
3176 3374 5.813080 ACGGTGCAAAAATAGGAGATTAC 57.187 39.130 0.00 0.00 0.00 1.89
3184 3382 3.840890 TTGCCTACGGTGCAAAAATAG 57.159 42.857 3.67 0.00 45.11 1.73
3191 3389 2.258013 GCAGTTTGCCTACGGTGCA 61.258 57.895 0.00 0.00 37.42 4.57
3193 3391 0.951558 AAAGCAGTTTGCCTACGGTG 59.048 50.000 0.00 0.00 46.52 4.94
3199 3397 3.728385 AGGAGATAAAGCAGTTTGCCT 57.272 42.857 0.00 0.00 46.52 4.75
4497 4745 1.302993 GTACCTTCTTTGCCCGCCA 60.303 57.895 0.00 0.00 0.00 5.69
4498 4746 2.044555 GGTACCTTCTTTGCCCGCC 61.045 63.158 4.06 0.00 0.00 6.13
4499 4747 0.891904 TTGGTACCTTCTTTGCCCGC 60.892 55.000 14.36 0.00 0.00 6.13
4500 4748 1.165270 CTTGGTACCTTCTTTGCCCG 58.835 55.000 14.36 0.00 0.00 6.13
4501 4749 2.160205 GTCTTGGTACCTTCTTTGCCC 58.840 52.381 14.36 0.00 0.00 5.36
4502 4750 1.804748 CGTCTTGGTACCTTCTTTGCC 59.195 52.381 14.36 0.00 0.00 4.52
4503 4751 1.804748 CCGTCTTGGTACCTTCTTTGC 59.195 52.381 14.36 0.00 0.00 3.68
4504 4752 3.396260 TCCGTCTTGGTACCTTCTTTG 57.604 47.619 14.36 0.00 39.52 2.77
4505 4753 3.644738 TCTTCCGTCTTGGTACCTTCTTT 59.355 43.478 14.36 0.00 39.52 2.52
4506 4754 3.236896 TCTTCCGTCTTGGTACCTTCTT 58.763 45.455 14.36 0.00 39.52 2.52
4507 4755 2.885616 TCTTCCGTCTTGGTACCTTCT 58.114 47.619 14.36 0.00 39.52 2.85
4508 4756 3.194968 TCATCTTCCGTCTTGGTACCTTC 59.805 47.826 14.36 0.09 39.52 3.46
4509 4757 3.056035 GTCATCTTCCGTCTTGGTACCTT 60.056 47.826 14.36 0.00 39.52 3.50
4510 4758 2.496470 GTCATCTTCCGTCTTGGTACCT 59.504 50.000 14.36 0.00 39.52 3.08
4511 4759 2.232941 TGTCATCTTCCGTCTTGGTACC 59.767 50.000 4.43 4.43 39.52 3.34
4512 4760 3.587797 TGTCATCTTCCGTCTTGGTAC 57.412 47.619 0.00 0.00 39.52 3.34
4513 4761 3.118775 CCATGTCATCTTCCGTCTTGGTA 60.119 47.826 0.00 0.00 39.52 3.25
4514 4762 2.355108 CCATGTCATCTTCCGTCTTGGT 60.355 50.000 0.00 0.00 39.52 3.67
4515 4763 2.283298 CCATGTCATCTTCCGTCTTGG 58.717 52.381 0.00 0.00 40.09 3.61
4516 4764 1.667724 GCCATGTCATCTTCCGTCTTG 59.332 52.381 0.00 0.00 0.00 3.02
4517 4765 1.740380 CGCCATGTCATCTTCCGTCTT 60.740 52.381 0.00 0.00 0.00 3.01
4518 4766 0.179100 CGCCATGTCATCTTCCGTCT 60.179 55.000 0.00 0.00 0.00 4.18
4519 4767 1.154205 CCGCCATGTCATCTTCCGTC 61.154 60.000 0.00 0.00 0.00 4.79
4520 4768 1.153369 CCGCCATGTCATCTTCCGT 60.153 57.895 0.00 0.00 0.00 4.69
4521 4769 1.889105 CCCGCCATGTCATCTTCCG 60.889 63.158 0.00 0.00 0.00 4.30
4522 4770 2.189499 GCCCGCCATGTCATCTTCC 61.189 63.158 0.00 0.00 0.00 3.46
4523 4771 0.820891 ATGCCCGCCATGTCATCTTC 60.821 55.000 0.00 0.00 31.48 2.87
4524 4772 0.473755 TATGCCCGCCATGTCATCTT 59.526 50.000 0.00 0.00 35.34 2.40
4525 4773 0.035881 CTATGCCCGCCATGTCATCT 59.964 55.000 0.00 0.00 35.34 2.90
4526 4774 0.035317 TCTATGCCCGCCATGTCATC 59.965 55.000 0.00 0.00 35.34 2.92
4527 4775 0.473755 TTCTATGCCCGCCATGTCAT 59.526 50.000 0.00 0.00 35.34 3.06
4528 4776 0.179048 CTTCTATGCCCGCCATGTCA 60.179 55.000 0.00 0.00 35.34 3.58
4529 4777 0.886490 CCTTCTATGCCCGCCATGTC 60.886 60.000 0.00 0.00 35.34 3.06
4530 4778 1.149174 CCTTCTATGCCCGCCATGT 59.851 57.895 0.00 0.00 35.34 3.21
4531 4779 0.396435 TACCTTCTATGCCCGCCATG 59.604 55.000 0.00 0.00 35.34 3.66
4532 4780 0.396811 GTACCTTCTATGCCCGCCAT 59.603 55.000 0.00 0.00 37.97 4.40
4533 4781 1.692173 GGTACCTTCTATGCCCGCCA 61.692 60.000 4.06 0.00 0.00 5.69
4534 4782 1.070957 GGTACCTTCTATGCCCGCC 59.929 63.158 4.06 0.00 0.00 6.13
4535 4783 0.396811 ATGGTACCTTCTATGCCCGC 59.603 55.000 14.36 0.00 0.00 6.13
4536 4784 1.691976 TCATGGTACCTTCTATGCCCG 59.308 52.381 14.36 0.00 0.00 6.13
4537 4785 2.548067 CGTCATGGTACCTTCTATGCCC 60.548 54.545 14.36 2.13 0.00 5.36
4538 4786 2.548067 CCGTCATGGTACCTTCTATGCC 60.548 54.545 14.36 0.00 0.00 4.40
4539 4787 2.364324 TCCGTCATGGTACCTTCTATGC 59.636 50.000 14.36 4.30 39.52 3.14
4540 4788 4.341235 TCTTCCGTCATGGTACCTTCTATG 59.659 45.833 14.36 8.51 39.52 2.23
4541 4789 4.543689 TCTTCCGTCATGGTACCTTCTAT 58.456 43.478 14.36 0.00 39.52 1.98
4542 4790 3.972133 TCTTCCGTCATGGTACCTTCTA 58.028 45.455 14.36 0.00 39.52 2.10
4543 4791 2.816411 TCTTCCGTCATGGTACCTTCT 58.184 47.619 14.36 0.00 39.52 2.85
4544 4792 3.132289 TCATCTTCCGTCATGGTACCTTC 59.868 47.826 14.36 0.09 39.52 3.46
4545 4793 3.104512 TCATCTTCCGTCATGGTACCTT 58.895 45.455 14.36 3.50 39.52 3.50
4546 4794 2.431057 GTCATCTTCCGTCATGGTACCT 59.569 50.000 14.36 0.00 39.52 3.08
4547 4795 2.167693 TGTCATCTTCCGTCATGGTACC 59.832 50.000 4.43 4.43 39.52 3.34
4548 4796 3.520290 TGTCATCTTCCGTCATGGTAC 57.480 47.619 0.00 0.00 39.52 3.34
4549 4797 3.181466 CCATGTCATCTTCCGTCATGGTA 60.181 47.826 12.53 0.00 45.80 3.25
4550 4798 2.420547 CCATGTCATCTTCCGTCATGGT 60.421 50.000 12.53 0.00 45.80 3.55
4551 4799 2.216046 CCATGTCATCTTCCGTCATGG 58.784 52.381 7.86 7.86 45.72 3.66
4552 4800 1.600957 GCCATGTCATCTTCCGTCATG 59.399 52.381 0.00 0.00 36.60 3.07
4553 4801 1.807755 CGCCATGTCATCTTCCGTCAT 60.808 52.381 0.00 0.00 0.00 3.06
4554 4802 0.460109 CGCCATGTCATCTTCCGTCA 60.460 55.000 0.00 0.00 0.00 4.35
4555 4803 1.154205 CCGCCATGTCATCTTCCGTC 61.154 60.000 0.00 0.00 0.00 4.79
4556 4804 1.153369 CCGCCATGTCATCTTCCGT 60.153 57.895 0.00 0.00 0.00 4.69
4557 4805 1.889105 CCCGCCATGTCATCTTCCG 60.889 63.158 0.00 0.00 0.00 4.30
4558 4806 2.189499 GCCCGCCATGTCATCTTCC 61.189 63.158 0.00 0.00 0.00 3.46
4559 4807 0.820891 ATGCCCGCCATGTCATCTTC 60.821 55.000 0.00 0.00 31.48 2.87
4560 4808 0.473755 TATGCCCGCCATGTCATCTT 59.526 50.000 0.00 0.00 35.34 2.40
4561 4809 0.035881 CTATGCCCGCCATGTCATCT 59.964 55.000 0.00 0.00 35.34 2.90
4562 4810 0.035317 TCTATGCCCGCCATGTCATC 59.965 55.000 0.00 0.00 35.34 2.92
4563 4811 0.473755 TTCTATGCCCGCCATGTCAT 59.526 50.000 0.00 0.00 35.34 3.06
4564 4812 0.179048 CTTCTATGCCCGCCATGTCA 60.179 55.000 0.00 0.00 35.34 3.58
4565 4813 0.886490 CCTTCTATGCCCGCCATGTC 60.886 60.000 0.00 0.00 35.34 3.06
4566 4814 1.149174 CCTTCTATGCCCGCCATGT 59.851 57.895 0.00 0.00 35.34 3.21
4567 4815 0.396435 TACCTTCTATGCCCGCCATG 59.604 55.000 0.00 0.00 35.34 3.66
4568 4816 0.396811 GTACCTTCTATGCCCGCCAT 59.603 55.000 0.00 0.00 37.97 4.40
4590 4838 1.080093 GCCGTGTCATCTTCCGTCA 60.080 57.895 0.00 0.00 0.00 4.35
4614 4934 3.972133 TCTTCCGTCATGGTACCTTCTA 58.028 45.455 14.36 0.00 39.52 2.10
4624 4944 1.280982 CCGTGTCATCTTCCGTCATG 58.719 55.000 0.00 0.00 0.00 3.07
4626 4946 1.080093 GCCGTGTCATCTTCCGTCA 60.080 57.895 0.00 0.00 0.00 4.35
4641 4961 2.046700 TACCTTCTTTGCCCGCCG 60.047 61.111 0.00 0.00 0.00 6.46
4656 4976 3.251571 GTGTCATCTTCCGTCTTGGTAC 58.748 50.000 0.00 0.00 39.52 3.34
4940 5491 1.474677 CCTCCTGCTGCAATCGAGAAT 60.475 52.381 17.73 0.00 0.00 2.40
4941 5492 0.107993 CCTCCTGCTGCAATCGAGAA 60.108 55.000 17.73 0.00 0.00 2.87
4942 5493 1.519246 CCTCCTGCTGCAATCGAGA 59.481 57.895 17.73 4.80 0.00 4.04
4943 5494 2.178890 GCCTCCTGCTGCAATCGAG 61.179 63.158 3.02 8.73 36.87 4.04
4944 5495 2.124983 GCCTCCTGCTGCAATCGA 60.125 61.111 3.02 0.00 36.87 3.59
4945 5496 3.207669 GGCCTCCTGCTGCAATCG 61.208 66.667 3.02 0.00 40.92 3.34
4946 5497 2.832201 GGGCCTCCTGCTGCAATC 60.832 66.667 0.84 0.00 40.92 2.67
4947 5498 4.453892 GGGGCCTCCTGCTGCAAT 62.454 66.667 0.84 0.00 40.92 3.56
4956 5507 0.182299 CATCTTCTTCAGGGGCCTCC 59.818 60.000 0.00 0.00 0.00 4.30
4957 5508 0.182299 CCATCTTCTTCAGGGGCCTC 59.818 60.000 0.84 0.00 0.00 4.70
4958 5509 1.931007 GCCATCTTCTTCAGGGGCCT 61.931 60.000 0.84 0.00 37.38 5.19
4959 5510 1.454663 GCCATCTTCTTCAGGGGCC 60.455 63.158 0.00 0.00 37.38 5.80
4960 5511 0.106318 ATGCCATCTTCTTCAGGGGC 60.106 55.000 0.00 0.00 41.39 5.80
4961 5512 1.688772 CATGCCATCTTCTTCAGGGG 58.311 55.000 0.00 0.00 0.00 4.79
4962 5513 1.688772 CCATGCCATCTTCTTCAGGG 58.311 55.000 0.00 0.00 0.00 4.45
4963 5514 1.030457 GCCATGCCATCTTCTTCAGG 58.970 55.000 0.00 0.00 0.00 3.86
4964 5515 0.661552 CGCCATGCCATCTTCTTCAG 59.338 55.000 0.00 0.00 0.00 3.02
4965 5516 0.749091 CCGCCATGCCATCTTCTTCA 60.749 55.000 0.00 0.00 0.00 3.02
4966 5517 1.450531 CCCGCCATGCCATCTTCTTC 61.451 60.000 0.00 0.00 0.00 2.87
4967 5518 1.454479 CCCGCCATGCCATCTTCTT 60.454 57.895 0.00 0.00 0.00 2.52
4968 5519 2.194056 CCCGCCATGCCATCTTCT 59.806 61.111 0.00 0.00 0.00 2.85
4969 5520 3.599704 GCCCGCCATGCCATCTTC 61.600 66.667 0.00 0.00 0.00 2.87
4970 5521 3.961225 TTGCCCGCCATGCCATCTT 62.961 57.895 0.00 0.00 0.00 2.40
4971 5522 3.961225 TTTGCCCGCCATGCCATCT 62.961 57.895 0.00 0.00 0.00 2.90
4972 5523 3.435030 CTTTGCCCGCCATGCCATC 62.435 63.158 0.00 0.00 0.00 3.51
4973 5524 3.463585 CTTTGCCCGCCATGCCAT 61.464 61.111 0.00 0.00 0.00 4.40
4974 5525 4.675161 TCTTTGCCCGCCATGCCA 62.675 61.111 0.00 0.00 0.00 4.92
4975 5526 3.360956 CTTCTTTGCCCGCCATGCC 62.361 63.158 0.00 0.00 0.00 4.40
4976 5527 2.182537 CTTCTTTGCCCGCCATGC 59.817 61.111 0.00 0.00 0.00 4.06
4977 5528 0.679640 TACCTTCTTTGCCCGCCATG 60.680 55.000 0.00 0.00 0.00 3.66
4978 5529 0.679960 GTACCTTCTTTGCCCGCCAT 60.680 55.000 0.00 0.00 0.00 4.40
4979 5530 1.302993 GTACCTTCTTTGCCCGCCA 60.303 57.895 0.00 0.00 0.00 5.69
4980 5531 2.044555 GGTACCTTCTTTGCCCGCC 61.045 63.158 4.06 0.00 0.00 6.13
4981 5532 0.891904 TTGGTACCTTCTTTGCCCGC 60.892 55.000 14.36 0.00 0.00 6.13
4982 5533 1.165270 CTTGGTACCTTCTTTGCCCG 58.835 55.000 14.36 0.00 0.00 6.13
4983 5534 2.160205 GTCTTGGTACCTTCTTTGCCC 58.840 52.381 14.36 0.00 0.00 5.36
4984 5535 1.804748 CGTCTTGGTACCTTCTTTGCC 59.195 52.381 14.36 0.00 0.00 4.52
4985 5536 1.804748 CCGTCTTGGTACCTTCTTTGC 59.195 52.381 14.36 0.00 0.00 3.68
4986 5537 3.396260 TCCGTCTTGGTACCTTCTTTG 57.604 47.619 14.36 0.00 39.52 2.77
4987 5538 3.644738 TCTTCCGTCTTGGTACCTTCTTT 59.355 43.478 14.36 0.00 39.52 2.52
4988 5539 3.236896 TCTTCCGTCTTGGTACCTTCTT 58.763 45.455 14.36 0.00 39.52 2.52
5049 5600 0.396435 TACCTTCTATGCCCGCCATG 59.604 55.000 0.00 0.00 35.34 3.66
5050 5601 0.396811 GTACCTTCTATGCCCGCCAT 59.603 55.000 0.00 0.00 37.97 4.40
5051 5602 1.692173 GGTACCTTCTATGCCCGCCA 61.692 60.000 4.06 0.00 0.00 5.69
5052 5603 1.070957 GGTACCTTCTATGCCCGCC 59.929 63.158 4.06 0.00 0.00 6.13
5053 5604 0.179468 TTGGTACCTTCTATGCCCGC 59.821 55.000 14.36 0.00 0.00 6.13
5054 5605 1.760613 TCTTGGTACCTTCTATGCCCG 59.239 52.381 14.36 0.00 0.00 6.13
5055 5606 2.483188 CGTCTTGGTACCTTCTATGCCC 60.483 54.545 14.36 0.00 0.00 5.36
5056 5607 2.483188 CCGTCTTGGTACCTTCTATGCC 60.483 54.545 14.36 0.00 0.00 4.40
5057 5608 2.429610 TCCGTCTTGGTACCTTCTATGC 59.570 50.000 14.36 0.00 39.52 3.14
5058 5609 4.401519 TCTTCCGTCTTGGTACCTTCTATG 59.598 45.833 14.36 1.75 39.52 2.23
5059 5610 4.607239 TCTTCCGTCTTGGTACCTTCTAT 58.393 43.478 14.36 0.00 39.52 1.98
5060 5611 4.038271 TCTTCCGTCTTGGTACCTTCTA 57.962 45.455 14.36 0.00 39.52 2.10
5061 5612 2.885616 TCTTCCGTCTTGGTACCTTCT 58.114 47.619 14.36 0.00 39.52 2.85
5062 5613 3.194968 TCATCTTCCGTCTTGGTACCTTC 59.805 47.826 14.36 0.09 39.52 3.46
5063 5614 3.056035 GTCATCTTCCGTCTTGGTACCTT 60.056 47.826 14.36 0.00 39.52 3.50
5064 5615 2.496470 GTCATCTTCCGTCTTGGTACCT 59.504 50.000 14.36 0.00 39.52 3.08
5065 5616 2.232941 TGTCATCTTCCGTCTTGGTACC 59.767 50.000 4.43 4.43 39.52 3.34
5066 5617 3.251571 GTGTCATCTTCCGTCTTGGTAC 58.748 50.000 0.00 0.00 39.52 3.34
5067 5618 2.094906 CGTGTCATCTTCCGTCTTGGTA 60.095 50.000 0.00 0.00 39.52 3.25
5068 5619 1.336887 CGTGTCATCTTCCGTCTTGGT 60.337 52.381 0.00 0.00 39.52 3.67
5069 5620 1.350193 CGTGTCATCTTCCGTCTTGG 58.650 55.000 0.00 0.00 40.09 3.61
5070 5621 1.350193 CCGTGTCATCTTCCGTCTTG 58.650 55.000 0.00 0.00 0.00 3.02
5071 5622 0.389948 GCCGTGTCATCTTCCGTCTT 60.390 55.000 0.00 0.00 0.00 3.01
5072 5623 1.215647 GCCGTGTCATCTTCCGTCT 59.784 57.895 0.00 0.00 0.00 4.18
5073 5624 2.158959 CGCCGTGTCATCTTCCGTC 61.159 63.158 0.00 0.00 0.00 4.79
5074 5625 2.126071 CGCCGTGTCATCTTCCGT 60.126 61.111 0.00 0.00 0.00 4.69
5075 5626 2.885644 CCGCCGTGTCATCTTCCG 60.886 66.667 0.00 0.00 0.00 4.30
5076 5627 2.511600 CCCGCCGTGTCATCTTCC 60.512 66.667 0.00 0.00 0.00 3.46
5077 5628 3.195698 GCCCGCCGTGTCATCTTC 61.196 66.667 0.00 0.00 0.00 2.87
5078 5629 3.545124 TTGCCCGCCGTGTCATCTT 62.545 57.895 0.00 0.00 0.00 2.40
5079 5630 3.545124 TTTGCCCGCCGTGTCATCT 62.545 57.895 0.00 0.00 0.00 2.90
5080 5631 3.039202 CTTTGCCCGCCGTGTCATC 62.039 63.158 0.00 0.00 0.00 2.92
5081 5632 3.055719 CTTTGCCCGCCGTGTCAT 61.056 61.111 0.00 0.00 0.00 3.06
5082 5633 3.758973 TTCTTTGCCCGCCGTGTCA 62.759 57.895 0.00 0.00 0.00 3.58
5083 5634 2.966309 CTTCTTTGCCCGCCGTGTC 61.966 63.158 0.00 0.00 0.00 3.67
5084 5635 2.978010 CTTCTTTGCCCGCCGTGT 60.978 61.111 0.00 0.00 0.00 4.49
5085 5636 3.737172 CCTTCTTTGCCCGCCGTG 61.737 66.667 0.00 0.00 0.00 4.94
5086 5637 2.886134 TACCTTCTTTGCCCGCCGT 61.886 57.895 0.00 0.00 0.00 5.68
5087 5638 2.046700 TACCTTCTTTGCCCGCCG 60.047 61.111 0.00 0.00 0.00 6.46
5088 5639 2.044555 GGTACCTTCTTTGCCCGCC 61.045 63.158 4.06 0.00 0.00 6.13
5089 5640 0.891904 TTGGTACCTTCTTTGCCCGC 60.892 55.000 14.36 0.00 0.00 6.13
5090 5641 1.165270 CTTGGTACCTTCTTTGCCCG 58.835 55.000 14.36 0.00 0.00 6.13
5091 5642 2.160205 GTCTTGGTACCTTCTTTGCCC 58.840 52.381 14.36 0.00 0.00 5.36
5092 5643 1.804748 CGTCTTGGTACCTTCTTTGCC 59.195 52.381 14.36 0.00 0.00 4.52
5093 5644 1.804748 CCGTCTTGGTACCTTCTTTGC 59.195 52.381 14.36 0.00 0.00 3.68
5094 5645 3.396260 TCCGTCTTGGTACCTTCTTTG 57.604 47.619 14.36 0.00 39.52 2.77
5095 5646 3.644738 TCTTCCGTCTTGGTACCTTCTTT 59.355 43.478 14.36 0.00 39.52 2.52
5096 5647 3.236896 TCTTCCGTCTTGGTACCTTCTT 58.763 45.455 14.36 0.00 39.52 2.52
5097 5648 2.885616 TCTTCCGTCTTGGTACCTTCT 58.114 47.619 14.36 0.00 39.52 2.85
5098 5649 3.056035 ACATCTTCCGTCTTGGTACCTTC 60.056 47.826 14.36 0.09 39.52 3.46
5099 5650 2.904434 ACATCTTCCGTCTTGGTACCTT 59.096 45.455 14.36 0.00 39.52 3.50
5100 5651 2.496470 GACATCTTCCGTCTTGGTACCT 59.504 50.000 14.36 0.00 39.52 3.08
5219 5806 3.153919 GTGGCACCATTTCTACTTTCCA 58.846 45.455 6.29 0.00 0.00 3.53
5223 5810 4.373156 AGAAGTGGCACCATTTCTACTT 57.627 40.909 21.85 6.66 46.37 2.24
5273 5860 0.179081 GGAACCGATCTACCACTGCC 60.179 60.000 0.00 0.00 0.00 4.85
5362 5953 4.007644 CGTGCTGGAGCCCACTCA 62.008 66.667 0.00 0.00 45.42 3.41
5426 6017 2.514803 ACAGTGAAATTTTCGAGGGGG 58.485 47.619 0.00 0.00 0.00 5.40
5429 6020 5.519927 AGCAAAAACAGTGAAATTTTCGAGG 59.480 36.000 0.00 0.00 0.00 4.63
5431 6022 6.587990 TCAAGCAAAAACAGTGAAATTTTCGA 59.412 30.769 0.00 0.00 0.00 3.71
5432 6023 6.678245 GTCAAGCAAAAACAGTGAAATTTTCG 59.322 34.615 0.00 0.00 0.00 3.46
5444 6035 1.859302 ACCCAGGTCAAGCAAAAACA 58.141 45.000 0.00 0.00 0.00 2.83
5457 6048 1.110442 TGTCAGCAAAACAACCCAGG 58.890 50.000 0.00 0.00 0.00 4.45
5509 6100 9.924650 TTAAGGTTAAGAAAGACATCTCTACAC 57.075 33.333 0.00 0.00 0.00 2.90
5532 6123 2.813754 GCATGAAGATATGCCGCCTTAA 59.186 45.455 0.00 0.00 45.93 1.85
5534 6125 1.242076 GCATGAAGATATGCCGCCTT 58.758 50.000 0.00 0.00 45.93 4.35
5645 6249 4.790765 TCATAGATTCAGCCGTATCCAG 57.209 45.455 0.00 0.00 0.00 3.86
5689 6321 0.109597 CATTCAACAGGGCTCGCAAC 60.110 55.000 0.00 0.00 0.00 4.17
5751 6383 1.358759 CCAGGACAACAAACGTGGC 59.641 57.895 0.00 0.00 35.76 5.01
5845 6517 9.567776 TTTACATCTTCTGTTTTACATCTCCAA 57.432 29.630 0.00 0.00 39.39 3.53
5890 6562 5.925969 CGCCCTGATTTTGAAGTAAAAACAT 59.074 36.000 0.00 0.00 41.29 2.71
5898 6570 1.586154 CGCCGCCCTGATTTTGAAGT 61.586 55.000 0.00 0.00 0.00 3.01
5899 6571 1.137404 CGCCGCCCTGATTTTGAAG 59.863 57.895 0.00 0.00 0.00 3.02
5900 6572 2.339556 CCGCCGCCCTGATTTTGAA 61.340 57.895 0.00 0.00 0.00 2.69
5901 6573 2.749839 CCGCCGCCCTGATTTTGA 60.750 61.111 0.00 0.00 0.00 2.69
5902 6574 4.496927 GCCGCCGCCCTGATTTTG 62.497 66.667 0.00 0.00 0.00 2.44
5956 6761 1.677633 CCCGGTTCATCCCCAACAC 60.678 63.158 0.00 0.00 0.00 3.32
5957 6762 2.760477 CCCGGTTCATCCCCAACA 59.240 61.111 0.00 0.00 0.00 3.33
5958 6763 2.754254 GCCCGGTTCATCCCCAAC 60.754 66.667 0.00 0.00 0.00 3.77
5959 6764 4.418328 CGCCCGGTTCATCCCCAA 62.418 66.667 0.00 0.00 0.00 4.12
5982 6834 1.201877 CGTATTTTCCGCCACTCAACG 60.202 52.381 0.00 0.00 0.00 4.10
5985 6837 0.322322 ACCGTATTTTCCGCCACTCA 59.678 50.000 0.00 0.00 0.00 3.41
6011 6863 4.530857 GCTCCGCCCGTATGCTGT 62.531 66.667 0.00 0.00 0.00 4.40
6033 6885 2.438434 AAGCATACGGCCAGCCAC 60.438 61.111 9.78 0.00 46.50 5.01
6044 6904 1.677300 CACCCAACCGCCAAGCATA 60.677 57.895 0.00 0.00 0.00 3.14
6112 6972 1.886886 TTTGAGCGTTTACTCCACCC 58.113 50.000 0.00 0.00 35.72 4.61
6120 6980 3.488384 CCAGTGCTGTTTTTGAGCGTTTA 60.488 43.478 0.00 0.00 39.47 2.01
6240 7102 2.661195 GTGTGTGTGTGTGCAAGTTTTC 59.339 45.455 0.00 0.00 0.00 2.29
6250 7112 2.124901 CCCCGTGTGTGTGTGTGT 60.125 61.111 0.00 0.00 0.00 3.72
6267 7129 1.593209 TTCCGTCGGTCAGTTGTGC 60.593 57.895 11.88 0.00 0.00 4.57
6272 7134 0.748450 TTTGAGTTCCGTCGGTCAGT 59.252 50.000 11.88 2.08 0.00 3.41
6389 8513 1.893919 AACGGAGAAGGAGCAGAGGC 61.894 60.000 0.00 0.00 41.61 4.70
6403 8527 3.592059 CCTTATCTGGAAACGAAACGGA 58.408 45.455 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.