Multiple sequence alignment - TraesCS5D01G104700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G104700 chr5D 100.000 8838 0 0 1 8838 118492617 118501454 0.000000e+00 16321.0
1 TraesCS5D01G104700 chr5B 96.319 6656 149 38 1731 8338 130723946 130730553 0.000000e+00 10846.0
2 TraesCS5D01G104700 chr5B 93.082 1301 46 9 306 1562 130722632 130723932 0.000000e+00 1864.0
3 TraesCS5D01G104700 chr5B 89.500 200 18 2 8333 8529 130730578 130730777 5.300000e-62 250.0
4 TraesCS5D01G104700 chr5B 95.556 45 2 0 236 280 130722198 130722242 1.230000e-08 73.1
5 TraesCS5D01G104700 chr5A 96.321 4403 96 24 306 4669 127978828 127983203 0.000000e+00 7173.0
6 TraesCS5D01G104700 chr5A 95.144 1112 39 8 7231 8338 127985975 127987075 0.000000e+00 1740.0
7 TraesCS5D01G104700 chr5A 93.833 1135 50 9 5575 6706 127984379 127985496 0.000000e+00 1690.0
8 TraesCS5D01G104700 chr5A 92.873 884 34 10 4669 5527 127983501 127984380 0.000000e+00 1256.0
9 TraesCS5D01G104700 chr5A 94.848 330 15 1 6740 7067 127985562 127985891 1.700000e-141 514.0
10 TraesCS5D01G104700 chr5A 83.730 252 26 12 8333 8581 127987100 127987339 3.210000e-54 224.0
11 TraesCS5D01G104700 chr5A 87.586 145 8 3 143 284 127978700 127978837 9.180000e-35 159.0
12 TraesCS5D01G104700 chr5A 97.647 85 2 0 7094 7178 127985891 127985975 7.150000e-31 147.0
13 TraesCS5D01G104700 chr7B 94.882 254 13 0 8582 8835 640145655 640145402 1.790000e-106 398.0
14 TraesCS5D01G104700 chr7D 93.822 259 13 3 8582 8838 333709811 333709554 3.870000e-103 387.0
15 TraesCS5D01G104700 chr7D 85.567 97 12 2 4 100 205564922 205564828 5.650000e-17 100.0
16 TraesCS5D01G104700 chr6D 93.436 259 15 2 8582 8838 6984156 6984414 5.010000e-102 383.0
17 TraesCS5D01G104700 chr2D 93.436 259 15 2 8582 8838 525499912 525499654 5.010000e-102 383.0
18 TraesCS5D01G104700 chr2B 93.077 260 16 2 8581 8838 43228431 43228172 6.480000e-101 379.0
19 TraesCS5D01G104700 chr2B 80.734 109 20 1 1 108 11404902 11405010 5.690000e-12 84.2
20 TraesCS5D01G104700 chr2B 94.444 36 0 2 69 102 666107655 666107620 4.000000e-03 54.7
21 TraesCS5D01G104700 chr1D 93.701 254 15 1 8582 8834 468307098 468306845 6.480000e-101 379.0
22 TraesCS5D01G104700 chr1B 92.748 262 17 2 8579 8838 53258959 53259220 2.330000e-100 377.0
23 TraesCS5D01G104700 chr3D 92.664 259 17 1 8582 8838 118512340 118512082 1.080000e-98 372.0
24 TraesCS5D01G104700 chr3D 91.760 267 20 2 8574 8838 565875551 565875285 3.900000e-98 370.0
25 TraesCS5D01G104700 chr2A 97.980 99 2 0 2740 2838 673006204 673006106 1.180000e-38 172.0
26 TraesCS5D01G104700 chr2A 88.889 99 8 3 2652 2748 673006830 673006733 1.560000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G104700 chr5D 118492617 118501454 8837 False 16321.000 16321 100.00000 1 8838 1 chr5D.!!$F1 8837
1 TraesCS5D01G104700 chr5B 130722198 130730777 8579 False 3258.275 10846 93.61425 236 8529 4 chr5B.!!$F1 8293
2 TraesCS5D01G104700 chr5A 127978700 127987339 8639 False 1612.875 7173 92.74775 143 8581 8 chr5A.!!$F1 8438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.037605 CGGGCTTACTTCGTGACCTT 60.038 55.000 0.00 0.00 0.00 3.50 F
130 131 0.682852 TACTTCGTGACCTTGTGGGG 59.317 55.000 0.00 0.00 40.03 4.96 F
910 1349 0.959372 ACACCCTCGTCGTCTAGTGG 60.959 60.000 10.50 0.00 0.00 4.00 F
1693 2141 1.295020 AATGGGAAACGGGAGGATCA 58.705 50.000 0.00 0.00 36.25 2.92 F
1857 2305 1.392853 CTGTTTTAGAGCTCTGCTGCG 59.607 52.381 26.78 6.44 39.88 5.18 F
3032 3491 0.110486 AGCAACGGATCAACCAAGGT 59.890 50.000 0.00 0.00 38.90 3.50 F
3134 3593 0.179048 CCACAGTCACAGTCTGCCAA 60.179 55.000 0.00 0.00 36.50 4.52 F
4104 4563 0.892814 GAGCAGCAGTGGAAAAGGCT 60.893 55.000 0.00 0.00 36.99 4.58 F
4899 5658 1.624813 TCTGTCATGACACATGAGCCA 59.375 47.619 24.56 9.01 36.21 4.75 F
6014 6808 0.314935 CACGCTTCCACAGGCAAATT 59.685 50.000 0.00 0.00 0.00 1.82 F
6656 7459 0.465705 CAGTGGAGGCACATATCCGT 59.534 55.000 0.00 0.00 38.52 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 2123 1.143684 CATGATCCTCCCGTTTCCCAT 59.856 52.381 0.00 0.0 0.00 4.00 R
1697 2145 1.195115 TGCCCAGCTCGATAACTTCT 58.805 50.000 0.00 0.0 0.00 2.85 R
2371 2829 0.264657 AGGGGAAAAAGTGGTTGGCT 59.735 50.000 0.00 0.0 0.00 4.75 R
2733 3192 0.725686 CAGCAGTTTGCCTGAGATCG 59.274 55.000 0.00 0.0 46.52 3.69 R
3072 3531 0.954452 CAGAAGGTTGTTGGGCTGAC 59.046 55.000 0.00 0.0 0.00 3.51 R
4104 4563 2.050836 TTTCCCGAACCTCAGCTGCA 62.051 55.000 9.47 0.0 0.00 4.41 R
4563 5023 2.751259 GCTTGAAACTCATCAGATGGCA 59.249 45.455 10.67 0.0 0.00 4.92 R
5564 6357 0.892358 AGTGGAGTTGCATGCACCAG 60.892 55.000 24.49 0.0 42.00 4.00 R
6656 7459 0.178873 ACCACCCTCCTCTTGGCTAA 60.179 55.000 0.00 0.0 33.25 3.09 R
6823 7666 1.300481 GGCTTTCCGGCTAACTGATC 58.700 55.000 0.00 0.0 34.85 2.92 R
8479 9387 0.176449 TGATGACAGCTGGTGGATCG 59.824 55.000 19.93 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.046892 GGCAGAAGCAGGCGAGAA 60.047 61.111 0.00 0.00 44.61 2.87
67 68 2.105466 GGCAGAAGCAGGCGAGAAG 61.105 63.158 0.00 0.00 44.61 2.85
68 69 2.105466 GCAGAAGCAGGCGAGAAGG 61.105 63.158 0.00 0.00 41.58 3.46
115 116 3.408853 GGGGGAGCGGGCTTACTT 61.409 66.667 0.00 0.00 0.00 2.24
116 117 2.189784 GGGGAGCGGGCTTACTTC 59.810 66.667 0.00 0.00 0.00 3.01
117 118 2.202892 GGGAGCGGGCTTACTTCG 60.203 66.667 0.00 0.00 0.00 3.79
118 119 2.577593 GGAGCGGGCTTACTTCGT 59.422 61.111 0.00 0.00 0.00 3.85
119 120 1.810030 GGAGCGGGCTTACTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
120 121 1.214589 GAGCGGGCTTACTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
121 122 1.077089 GAGCGGGCTTACTTCGTGAC 61.077 60.000 0.00 0.00 0.00 3.67
122 123 2.098831 GCGGGCTTACTTCGTGACC 61.099 63.158 0.00 0.00 0.00 4.02
123 124 1.590147 CGGGCTTACTTCGTGACCT 59.410 57.895 0.00 0.00 0.00 3.85
124 125 0.037605 CGGGCTTACTTCGTGACCTT 60.038 55.000 0.00 0.00 0.00 3.50
125 126 1.439679 GGGCTTACTTCGTGACCTTG 58.560 55.000 0.00 0.00 0.00 3.61
126 127 1.270678 GGGCTTACTTCGTGACCTTGT 60.271 52.381 0.00 0.00 0.00 3.16
127 128 1.798813 GGCTTACTTCGTGACCTTGTG 59.201 52.381 0.00 0.00 0.00 3.33
128 129 1.798813 GCTTACTTCGTGACCTTGTGG 59.201 52.381 0.00 0.00 39.83 4.17
129 130 2.413837 CTTACTTCGTGACCTTGTGGG 58.586 52.381 0.00 0.00 41.89 4.61
130 131 0.682852 TACTTCGTGACCTTGTGGGG 59.317 55.000 0.00 0.00 40.03 4.96
131 132 1.342672 ACTTCGTGACCTTGTGGGGT 61.343 55.000 0.00 0.00 43.07 4.95
139 140 2.344093 ACCTTGTGGGGTCATAGTCT 57.656 50.000 0.00 0.00 40.03 3.24
140 141 1.909302 ACCTTGTGGGGTCATAGTCTG 59.091 52.381 0.00 0.00 40.03 3.51
141 142 1.407437 CCTTGTGGGGTCATAGTCTGC 60.407 57.143 0.00 0.00 0.00 4.26
147 148 3.054655 GTGGGGTCATAGTCTGCCTTTTA 60.055 47.826 0.00 0.00 0.00 1.52
202 206 3.808728 TCTTGTATATGCTCAACCAGGC 58.191 45.455 0.00 0.00 0.00 4.85
203 207 3.199727 TCTTGTATATGCTCAACCAGGCA 59.800 43.478 0.00 0.00 42.80 4.75
208 212 1.180029 ATGCTCAACCAGGCACAATC 58.820 50.000 0.00 0.00 41.39 2.67
284 683 4.026886 TCAGTCGAATGCGTATTTCGATTG 60.027 41.667 22.87 22.87 42.86 2.67
285 684 2.958347 GTCGAATGCGTATTTCGATTGC 59.042 45.455 17.89 7.34 42.86 3.56
288 687 1.577468 ATGCGTATTTCGATTGCCGA 58.423 45.000 0.00 0.00 46.94 5.54
317 716 7.620397 AAAGCGTACTACTATTTCGATTAGC 57.380 36.000 0.00 0.00 30.43 3.09
318 717 6.309712 AGCGTACTACTATTTCGATTAGCA 57.690 37.500 0.00 0.00 0.00 3.49
319 718 6.372185 AGCGTACTACTATTTCGATTAGCAG 58.628 40.000 0.00 0.00 0.00 4.24
320 719 6.017275 AGCGTACTACTATTTCGATTAGCAGT 60.017 38.462 11.46 11.46 30.34 4.40
321 720 6.636044 GCGTACTACTATTTCGATTAGCAGTT 59.364 38.462 11.81 1.53 28.63 3.16
322 721 7.149160 GCGTACTACTATTTCGATTAGCAGTTC 60.149 40.741 11.81 7.83 28.63 3.01
323 722 7.854422 CGTACTACTATTTCGATTAGCAGTTCA 59.146 37.037 11.81 0.00 28.63 3.18
324 723 9.512435 GTACTACTATTTCGATTAGCAGTTCAA 57.488 33.333 11.81 0.00 28.63 2.69
343 742 1.136356 CAAGTTGTGCGTGTGTGCA 59.864 52.632 0.00 0.00 43.95 4.57
391 795 1.081641 TGCGTCTTTCGGTCGACTC 60.082 57.895 16.46 4.72 40.26 3.36
392 796 1.081641 GCGTCTTTCGGTCGACTCA 60.082 57.895 16.46 0.00 40.26 3.41
393 797 1.335697 GCGTCTTTCGGTCGACTCAC 61.336 60.000 16.46 0.00 40.26 3.51
417 841 2.272471 CCCCGCTTCCTTCCTTCC 59.728 66.667 0.00 0.00 0.00 3.46
567 994 4.159321 GTCAGTGGATCATCTTGACTCTCA 59.841 45.833 0.00 0.00 0.00 3.27
568 995 4.401837 TCAGTGGATCATCTTGACTCTCAG 59.598 45.833 0.00 0.00 0.00 3.35
576 1004 3.560902 TCTTGACTCTCAGCGTGTAAG 57.439 47.619 0.00 0.00 0.00 2.34
586 1014 2.202570 CGTGTAAGCCTAGCGCGT 60.203 61.111 8.43 0.00 44.76 6.01
610 1038 1.828224 GCCTTTTATCCCTGGCCCG 60.828 63.158 0.00 0.00 39.49 6.13
910 1349 0.959372 ACACCCTCGTCGTCTAGTGG 60.959 60.000 10.50 0.00 0.00 4.00
1293 1741 1.449601 GTCCATGCCCGTGTTCGAT 60.450 57.895 0.00 0.00 39.71 3.59
1568 2016 6.211384 AGGTAGGTGCTTTTATCTGCAATTTT 59.789 34.615 0.00 0.00 41.10 1.82
1569 2017 6.873605 GGTAGGTGCTTTTATCTGCAATTTTT 59.126 34.615 0.00 0.00 41.10 1.94
1600 2048 4.920640 AGGACGGTACATTATCTCTGTG 57.079 45.455 0.00 0.00 0.00 3.66
1662 2110 4.162131 ACAGATCAACCCAAAGCTTTTGTT 59.838 37.500 9.53 12.96 0.00 2.83
1675 2123 2.809696 GCTTTTGTTGGTACTCGCCTAA 59.190 45.455 0.00 0.00 0.00 2.69
1693 2141 1.295020 AATGGGAAACGGGAGGATCA 58.705 50.000 0.00 0.00 36.25 2.92
1697 2145 1.766496 GGGAAACGGGAGGATCATGTA 59.234 52.381 0.00 0.00 36.25 2.29
1835 2283 5.450965 GGTTCAGTCAGGAATGCATTTATGG 60.451 44.000 14.33 4.34 0.00 2.74
1857 2305 1.392853 CTGTTTTAGAGCTCTGCTGCG 59.607 52.381 26.78 6.44 39.88 5.18
1876 2324 1.941999 GCTGATTCACTTGGGCCTGC 61.942 60.000 4.53 0.00 0.00 4.85
2232 2690 4.988540 GGAGTTTGGTTTGCCTAATGAAAC 59.011 41.667 0.00 0.00 32.51 2.78
2371 2829 6.737346 GCAAGTTATCCACAAGTAGGCAAAAA 60.737 38.462 0.00 0.00 0.00 1.94
2448 2906 7.094420 TGTGAATTCTGTTACATTGGTACATGG 60.094 37.037 7.05 0.00 39.30 3.66
2733 3192 8.124199 TCCAGTTTGTAACGTTCTCATTTTTAC 58.876 33.333 2.82 0.00 36.23 2.01
2964 3423 1.728490 GCGCATTCAATCAGGTCCCC 61.728 60.000 0.30 0.00 0.00 4.81
3032 3491 0.110486 AGCAACGGATCAACCAAGGT 59.890 50.000 0.00 0.00 38.90 3.50
3072 3531 6.770076 TGTGCAAAATTTTCCGAAAAGAAAG 58.230 32.000 11.76 4.16 37.09 2.62
3133 3592 1.048160 TCCACAGTCACAGTCTGCCA 61.048 55.000 0.00 0.00 36.50 4.92
3134 3593 0.179048 CCACAGTCACAGTCTGCCAA 60.179 55.000 0.00 0.00 36.50 4.52
3522 3981 4.000557 CGGAATTCATCGGCGGCG 62.001 66.667 27.15 27.15 0.00 6.46
3633 4092 5.772672 TGCAAAGCTTAGAAATAGGGAACAA 59.227 36.000 0.00 0.00 0.00 2.83
4104 4563 0.892814 GAGCAGCAGTGGAAAAGGCT 60.893 55.000 0.00 0.00 36.99 4.58
4291 4750 6.061441 ACAGTGGTGATTACAACAATCTTCA 58.939 36.000 0.00 0.00 45.71 3.02
4312 4771 8.584157 TCTTCATGCAATAGTTGTTTTTATGGT 58.416 29.630 0.00 0.00 0.00 3.55
4388 4847 3.060602 GCTCAAAGTCAAAGTAGAGCGT 58.939 45.455 0.00 0.00 39.04 5.07
4510 4970 7.230849 TCCGTAACAGGAGTACTATTTTGAA 57.769 36.000 0.00 0.00 34.92 2.69
4562 5022 4.698304 TGGTTTATGTTCTTTTAGCTCCCG 59.302 41.667 0.00 0.00 0.00 5.14
4563 5023 4.698780 GGTTTATGTTCTTTTAGCTCCCGT 59.301 41.667 0.00 0.00 0.00 5.28
4585 5045 2.751259 GCCATCTGATGAGTTTCAAGCA 59.249 45.455 18.92 0.00 0.00 3.91
4882 5640 6.039616 GGCAGAAAGAGATGTAAGTACTCTG 58.960 44.000 0.00 0.00 40.28 3.35
4889 5648 7.328277 AGAGATGTAAGTACTCTGTCATGAC 57.672 40.000 19.27 19.27 39.17 3.06
4899 5658 1.624813 TCTGTCATGACACATGAGCCA 59.375 47.619 24.56 9.01 36.21 4.75
5518 6311 9.740239 ATTATTTGCTGATGCTTAAATGTACTG 57.260 29.630 0.00 0.00 40.48 2.74
5527 6320 7.498900 TGATGCTTAAATGTACTGTATTCCCAG 59.501 37.037 0.00 0.00 38.45 4.45
5528 6321 6.717289 TGCTTAAATGTACTGTATTCCCAGT 58.283 36.000 0.00 0.00 46.94 4.00
5529 6322 6.597672 TGCTTAAATGTACTGTATTCCCAGTG 59.402 38.462 4.17 0.00 45.08 3.66
5590 6383 2.286872 CATGCAACTCCACTCATCTCC 58.713 52.381 0.00 0.00 0.00 3.71
5719 6512 9.991906 CTCCATTAATAATTTTCATGCCAATCT 57.008 29.630 0.00 0.00 0.00 2.40
5760 6553 2.435372 TGGTGCACAAGTTTTCTCCT 57.565 45.000 20.43 0.00 0.00 3.69
5843 6636 0.742281 CACTGCTGACCCTGATTCCG 60.742 60.000 0.00 0.00 0.00 4.30
6014 6808 0.314935 CACGCTTCCACAGGCAAATT 59.685 50.000 0.00 0.00 0.00 1.82
6503 7306 2.953821 GGTCATTGTGTGCCGGTG 59.046 61.111 1.90 0.00 0.00 4.94
6656 7459 0.465705 CAGTGGAGGCACATATCCGT 59.534 55.000 0.00 0.00 38.52 4.69
6710 7521 1.229723 GTAAGGAGGGGTGGGTGGA 60.230 63.158 0.00 0.00 0.00 4.02
6718 7529 4.459089 GGTGGGTGGAGAGCGCTC 62.459 72.222 30.01 30.01 40.54 5.03
6762 7605 2.664402 ATAATAGGCAGCTGGGGTTG 57.336 50.000 17.12 0.00 0.00 3.77
6769 7612 4.603535 AGCTGGGGTTGTGGTGGC 62.604 66.667 0.00 0.00 0.00 5.01
6787 7630 2.224621 TGGCTGGGAAGAGAACAAAGAG 60.225 50.000 0.00 0.00 0.00 2.85
6806 7649 2.950309 GAGAACGTAGGCTCTGATACCA 59.050 50.000 0.00 0.00 31.83 3.25
6823 7666 0.659427 CCATAGAGTTGCATGCACCG 59.341 55.000 22.58 0.00 0.00 4.94
6940 7783 6.095720 TGTGATCTGCATTTCATATTTGCTGA 59.904 34.615 6.25 6.25 44.67 4.26
7080 7925 8.144155 CATATAGATGATGTGGATGCAATCTC 57.856 38.462 2.75 0.00 38.24 2.75
7081 7926 4.708576 AGATGATGTGGATGCAATCTCT 57.291 40.909 0.00 0.00 44.71 3.10
7082 7927 4.643463 AGATGATGTGGATGCAATCTCTC 58.357 43.478 0.00 0.00 44.71 3.20
7083 7928 4.348461 AGATGATGTGGATGCAATCTCTCT 59.652 41.667 0.00 0.20 44.71 3.10
7084 7929 4.069300 TGATGTGGATGCAATCTCTCTC 57.931 45.455 0.00 0.00 44.71 3.20
7085 7930 3.710165 TGATGTGGATGCAATCTCTCTCT 59.290 43.478 0.00 0.00 44.71 3.10
7086 7931 3.815856 TGTGGATGCAATCTCTCTCTC 57.184 47.619 0.00 0.00 44.71 3.20
7104 7949 3.189606 TCTCTCTCTCTCTCTTCCACCT 58.810 50.000 0.00 0.00 0.00 4.00
7199 8044 5.801350 TGCTATCAACAGTCAAAGCATAC 57.199 39.130 0.00 0.00 35.20 2.39
7679 8549 5.469421 CCTCTCTACATGCCAAGATTGAATC 59.531 44.000 0.00 0.00 0.00 2.52
7681 8551 6.417258 TCTCTACATGCCAAGATTGAATCAA 58.583 36.000 8.03 0.00 0.00 2.57
7751 8622 4.762251 ACCAGAGCAGAAATAACCTTTGAC 59.238 41.667 0.00 0.00 0.00 3.18
7777 8648 7.455058 GTTCCCCAACATTTTTATTAACCCTT 58.545 34.615 0.00 0.00 32.14 3.95
8098 8972 4.800784 TGTGTTGATTCGACGACTATTCA 58.199 39.130 0.00 0.00 0.00 2.57
8119 8993 2.898840 CTGCTACATGCCAGCGGG 60.899 66.667 17.23 0.00 42.13 6.13
8255 9129 3.790126 ACTTTGGGAAGGCCAATGTTAT 58.210 40.909 5.01 0.00 37.19 1.89
8283 9157 1.682854 CATGGCTTGTCACCTGTTTGT 59.317 47.619 0.00 0.00 0.00 2.83
8315 9189 4.435518 CCACTGTCATACGTTATGTTGTGC 60.436 45.833 0.00 0.00 37.45 4.57
8334 9208 3.756434 GTGCTGTTTATTGGGAACTGCTA 59.244 43.478 16.09 4.58 46.01 3.49
8338 9212 5.235850 TGTTTATTGGGAACTGCTAGTGA 57.764 39.130 0.00 0.00 0.00 3.41
8457 9363 3.194542 CGGAATTGGTTCAAATTGCCCTA 59.805 43.478 3.80 0.00 35.20 3.53
8459 9365 5.118286 GGAATTGGTTCAAATTGCCCTATG 58.882 41.667 3.80 0.00 36.01 2.23
8460 9366 5.338300 GGAATTGGTTCAAATTGCCCTATGT 60.338 40.000 3.80 0.00 36.01 2.29
8461 9367 6.127196 GGAATTGGTTCAAATTGCCCTATGTA 60.127 38.462 3.80 0.00 36.01 2.29
8462 9368 5.913137 TTGGTTCAAATTGCCCTATGTAG 57.087 39.130 3.80 0.00 0.00 2.74
8463 9369 3.699038 TGGTTCAAATTGCCCTATGTAGC 59.301 43.478 3.80 0.00 0.00 3.58
8464 9370 3.954258 GGTTCAAATTGCCCTATGTAGCT 59.046 43.478 0.00 0.00 0.00 3.32
8465 9371 4.202050 GGTTCAAATTGCCCTATGTAGCTG 60.202 45.833 0.00 0.00 0.00 4.24
8466 9372 4.502105 TCAAATTGCCCTATGTAGCTGA 57.498 40.909 0.00 0.00 0.00 4.26
8468 9374 4.080356 TCAAATTGCCCTATGTAGCTGAGT 60.080 41.667 0.00 0.00 0.00 3.41
8470 9376 5.630415 AATTGCCCTATGTAGCTGAGTAA 57.370 39.130 0.00 0.00 0.00 2.24
8471 9377 5.630415 ATTGCCCTATGTAGCTGAGTAAA 57.370 39.130 0.00 0.00 0.00 2.01
8479 9387 6.591834 CCTATGTAGCTGAGTAAATATGCCAC 59.408 42.308 0.00 0.00 0.00 5.01
8485 9393 4.631131 CTGAGTAAATATGCCACGATCCA 58.369 43.478 0.00 0.00 0.00 3.41
8506 9414 4.701651 CCACCAGCTGTCATCAGAAATAAA 59.298 41.667 13.81 0.00 43.76 1.40
8516 9424 8.883954 TGTCATCAGAAATAAACAAATGCAAA 57.116 26.923 0.00 0.00 0.00 3.68
8517 9425 8.980610 TGTCATCAGAAATAAACAAATGCAAAG 58.019 29.630 0.00 0.00 0.00 2.77
8581 9518 9.927668 CAGAAATTGTTCCCACACTTAAATATT 57.072 29.630 0.00 0.00 33.92 1.28
8582 9519 9.927668 AGAAATTGTTCCCACACTTAAATATTG 57.072 29.630 0.00 0.00 33.92 1.90
8583 9520 9.705290 GAAATTGTTCCCACACTTAAATATTGT 57.295 29.630 0.00 0.00 30.32 2.71
8587 9524 9.575868 TTGTTCCCACACTTAAATATTGTTAGA 57.424 29.630 0.00 0.00 30.32 2.10
8588 9525 9.226606 TGTTCCCACACTTAAATATTGTTAGAG 57.773 33.333 0.00 0.00 0.00 2.43
8589 9526 9.227777 GTTCCCACACTTAAATATTGTTAGAGT 57.772 33.333 0.00 0.00 0.00 3.24
8606 9543 9.730420 TTGTTAGAGTAAAACAAGATTGAAAGC 57.270 29.630 0.00 0.00 40.83 3.51
8607 9544 8.067784 TGTTAGAGTAAAACAAGATTGAAAGCG 58.932 33.333 0.00 0.00 34.04 4.68
8608 9545 6.861065 AGAGTAAAACAAGATTGAAAGCGA 57.139 33.333 0.00 0.00 0.00 4.93
8609 9546 7.259290 AGAGTAAAACAAGATTGAAAGCGAA 57.741 32.000 0.00 0.00 0.00 4.70
8610 9547 7.703328 AGAGTAAAACAAGATTGAAAGCGAAA 58.297 30.769 0.00 0.00 0.00 3.46
8611 9548 7.857885 AGAGTAAAACAAGATTGAAAGCGAAAG 59.142 33.333 0.00 0.00 0.00 2.62
8612 9549 6.918022 AGTAAAACAAGATTGAAAGCGAAAGG 59.082 34.615 0.00 0.00 0.00 3.11
8613 9550 5.514274 AAACAAGATTGAAAGCGAAAGGA 57.486 34.783 0.00 0.00 0.00 3.36
8614 9551 4.489679 ACAAGATTGAAAGCGAAAGGAC 57.510 40.909 0.00 0.00 0.00 3.85
8615 9552 3.882888 ACAAGATTGAAAGCGAAAGGACA 59.117 39.130 0.00 0.00 0.00 4.02
8616 9553 4.338118 ACAAGATTGAAAGCGAAAGGACAA 59.662 37.500 0.00 0.00 0.00 3.18
8617 9554 5.010012 ACAAGATTGAAAGCGAAAGGACAAT 59.990 36.000 0.00 0.00 0.00 2.71
8618 9555 5.302357 AGATTGAAAGCGAAAGGACAATC 57.698 39.130 0.00 0.00 41.80 2.67
8619 9556 4.761739 AGATTGAAAGCGAAAGGACAATCA 59.238 37.500 16.21 0.00 43.02 2.57
8620 9557 4.488126 TTGAAAGCGAAAGGACAATCAG 57.512 40.909 0.00 0.00 0.00 2.90
8621 9558 3.476552 TGAAAGCGAAAGGACAATCAGT 58.523 40.909 0.00 0.00 0.00 3.41
8622 9559 3.498397 TGAAAGCGAAAGGACAATCAGTC 59.502 43.478 0.00 0.00 46.83 3.51
8632 9569 3.140325 GACAATCAGTCCTGGTTTCCA 57.860 47.619 0.00 0.00 41.56 3.53
8633 9570 3.690460 GACAATCAGTCCTGGTTTCCAT 58.310 45.455 0.00 0.00 41.56 3.41
8634 9571 4.082125 GACAATCAGTCCTGGTTTCCATT 58.918 43.478 0.00 0.00 41.56 3.16
8635 9572 3.828451 ACAATCAGTCCTGGTTTCCATTG 59.172 43.478 0.00 0.77 30.19 2.82
8636 9573 4.081406 CAATCAGTCCTGGTTTCCATTGA 58.919 43.478 0.00 0.00 30.19 2.57
8637 9574 4.598036 ATCAGTCCTGGTTTCCATTGAT 57.402 40.909 0.00 0.00 30.82 2.57
8638 9575 4.387026 TCAGTCCTGGTTTCCATTGATT 57.613 40.909 0.00 0.00 30.82 2.57
8639 9576 4.335416 TCAGTCCTGGTTTCCATTGATTC 58.665 43.478 0.00 0.00 30.82 2.52
8640 9577 4.043310 TCAGTCCTGGTTTCCATTGATTCT 59.957 41.667 0.00 0.00 30.82 2.40
8641 9578 4.768968 CAGTCCTGGTTTCCATTGATTCTT 59.231 41.667 0.00 0.00 30.82 2.52
8642 9579 5.945784 CAGTCCTGGTTTCCATTGATTCTTA 59.054 40.000 0.00 0.00 30.82 2.10
8643 9580 6.434028 CAGTCCTGGTTTCCATTGATTCTTAA 59.566 38.462 0.00 0.00 30.82 1.85
8644 9581 6.434340 AGTCCTGGTTTCCATTGATTCTTAAC 59.566 38.462 0.00 0.00 30.82 2.01
8645 9582 6.434340 GTCCTGGTTTCCATTGATTCTTAACT 59.566 38.462 0.00 0.00 30.82 2.24
8646 9583 7.610305 GTCCTGGTTTCCATTGATTCTTAACTA 59.390 37.037 0.00 0.00 30.82 2.24
8647 9584 8.336235 TCCTGGTTTCCATTGATTCTTAACTAT 58.664 33.333 0.00 0.00 30.82 2.12
8648 9585 9.627123 CCTGGTTTCCATTGATTCTTAACTATA 57.373 33.333 0.00 0.00 30.82 1.31
8676 9613 3.587498 TCTGGAAGAGGTGGAAAGAAGA 58.413 45.455 0.00 0.00 38.67 2.87
8677 9614 3.580458 TCTGGAAGAGGTGGAAAGAAGAG 59.420 47.826 0.00 0.00 38.67 2.85
8678 9615 2.639839 TGGAAGAGGTGGAAAGAAGAGG 59.360 50.000 0.00 0.00 0.00 3.69
8679 9616 2.640332 GGAAGAGGTGGAAAGAAGAGGT 59.360 50.000 0.00 0.00 0.00 3.85
8680 9617 3.558109 GGAAGAGGTGGAAAGAAGAGGTG 60.558 52.174 0.00 0.00 0.00 4.00
8681 9618 2.695585 AGAGGTGGAAAGAAGAGGTGT 58.304 47.619 0.00 0.00 0.00 4.16
8682 9619 2.635427 AGAGGTGGAAAGAAGAGGTGTC 59.365 50.000 0.00 0.00 0.00 3.67
8683 9620 2.635427 GAGGTGGAAAGAAGAGGTGTCT 59.365 50.000 0.00 0.00 32.81 3.41
8684 9621 2.370189 AGGTGGAAAGAAGAGGTGTCTG 59.630 50.000 0.00 0.00 31.37 3.51
8685 9622 2.104963 GGTGGAAAGAAGAGGTGTCTGT 59.895 50.000 0.00 0.00 31.37 3.41
8686 9623 3.433740 GGTGGAAAGAAGAGGTGTCTGTT 60.434 47.826 0.00 0.00 31.37 3.16
8687 9624 3.810386 GTGGAAAGAAGAGGTGTCTGTTC 59.190 47.826 0.00 0.00 41.85 3.18
8688 9625 3.454447 TGGAAAGAAGAGGTGTCTGTTCA 59.546 43.478 6.15 0.00 43.37 3.18
8689 9626 4.061596 GGAAAGAAGAGGTGTCTGTTCAG 58.938 47.826 6.15 0.00 43.37 3.02
8690 9627 4.202264 GGAAAGAAGAGGTGTCTGTTCAGA 60.202 45.833 6.15 0.00 43.37 3.27
8691 9628 4.599047 AAGAAGAGGTGTCTGTTCAGAG 57.401 45.455 2.53 0.00 43.37 3.35
8692 9629 3.838565 AGAAGAGGTGTCTGTTCAGAGA 58.161 45.455 2.53 0.00 43.37 3.10
8693 9630 3.572255 AGAAGAGGTGTCTGTTCAGAGAC 59.428 47.826 17.87 17.87 43.37 3.36
8699 9636 2.894731 TGTCTGTTCAGAGACATCCCT 58.105 47.619 2.73 0.00 45.96 4.20
8700 9637 2.828520 TGTCTGTTCAGAGACATCCCTC 59.171 50.000 2.73 0.00 45.96 4.30
8701 9638 2.167487 GTCTGTTCAGAGACATCCCTCC 59.833 54.545 2.53 0.00 41.84 4.30
8702 9639 2.182827 CTGTTCAGAGACATCCCTCCA 58.817 52.381 0.00 0.00 33.76 3.86
8703 9640 2.168106 CTGTTCAGAGACATCCCTCCAG 59.832 54.545 0.00 0.00 33.76 3.86
8704 9641 2.225369 TGTTCAGAGACATCCCTCCAGA 60.225 50.000 0.00 0.00 33.76 3.86
8705 9642 2.834549 GTTCAGAGACATCCCTCCAGAA 59.165 50.000 0.00 0.00 33.76 3.02
8706 9643 2.461695 TCAGAGACATCCCTCCAGAAC 58.538 52.381 0.00 0.00 33.76 3.01
8707 9644 2.182827 CAGAGACATCCCTCCAGAACA 58.817 52.381 0.00 0.00 33.76 3.18
8708 9645 2.093764 CAGAGACATCCCTCCAGAACAC 60.094 54.545 0.00 0.00 33.76 3.32
8709 9646 0.898320 AGACATCCCTCCAGAACACG 59.102 55.000 0.00 0.00 0.00 4.49
8710 9647 0.608640 GACATCCCTCCAGAACACGT 59.391 55.000 0.00 0.00 0.00 4.49
8711 9648 0.321671 ACATCCCTCCAGAACACGTG 59.678 55.000 15.48 15.48 0.00 4.49
8712 9649 1.021390 CATCCCTCCAGAACACGTGC 61.021 60.000 17.22 0.00 0.00 5.34
8713 9650 1.194781 ATCCCTCCAGAACACGTGCT 61.195 55.000 17.22 2.15 0.00 4.40
8714 9651 1.071471 CCCTCCAGAACACGTGCTT 59.929 57.895 17.22 9.30 0.00 3.91
8715 9652 1.230635 CCCTCCAGAACACGTGCTTG 61.231 60.000 17.22 11.31 0.00 4.01
8716 9653 0.532862 CCTCCAGAACACGTGCTTGT 60.533 55.000 17.22 5.10 0.00 3.16
8717 9654 1.299541 CTCCAGAACACGTGCTTGTT 58.700 50.000 17.22 1.38 42.55 2.83
8718 9655 1.003545 CTCCAGAACACGTGCTTGTTG 60.004 52.381 17.22 7.27 39.88 3.33
8719 9656 0.029300 CCAGAACACGTGCTTGTTGG 59.971 55.000 17.22 12.57 39.88 3.77
8720 9657 0.592247 CAGAACACGTGCTTGTTGGC 60.592 55.000 17.22 0.00 39.88 4.52
8721 9658 1.029408 AGAACACGTGCTTGTTGGCA 61.029 50.000 17.22 0.00 39.88 4.92
8722 9659 0.179150 GAACACGTGCTTGTTGGCAA 60.179 50.000 17.22 0.00 44.18 4.52
8723 9660 0.459489 AACACGTGCTTGTTGGCAAT 59.541 45.000 17.22 0.00 44.18 3.56
8724 9661 1.313772 ACACGTGCTTGTTGGCAATA 58.686 45.000 17.22 0.00 44.18 1.90
8725 9662 1.266718 ACACGTGCTTGTTGGCAATAG 59.733 47.619 17.22 5.57 44.18 1.73
8726 9663 1.535028 CACGTGCTTGTTGGCAATAGA 59.465 47.619 0.82 0.00 44.18 1.98
8727 9664 2.031245 CACGTGCTTGTTGGCAATAGAA 60.031 45.455 0.82 0.00 44.18 2.10
8728 9665 2.621055 ACGTGCTTGTTGGCAATAGAAA 59.379 40.909 1.92 0.00 44.18 2.52
8729 9666 3.236816 CGTGCTTGTTGGCAATAGAAAG 58.763 45.455 1.92 6.86 44.18 2.62
8730 9667 3.058293 CGTGCTTGTTGGCAATAGAAAGA 60.058 43.478 1.92 0.00 44.18 2.52
8731 9668 4.479619 GTGCTTGTTGGCAATAGAAAGAG 58.520 43.478 1.92 0.00 44.18 2.85
8732 9669 4.216257 GTGCTTGTTGGCAATAGAAAGAGA 59.784 41.667 1.92 0.00 44.18 3.10
8733 9670 4.456911 TGCTTGTTGGCAATAGAAAGAGAG 59.543 41.667 1.92 0.00 39.43 3.20
8734 9671 4.697352 GCTTGTTGGCAATAGAAAGAGAGA 59.303 41.667 1.92 0.00 33.65 3.10
8735 9672 5.182001 GCTTGTTGGCAATAGAAAGAGAGAA 59.818 40.000 1.92 0.00 33.65 2.87
8736 9673 6.622462 GCTTGTTGGCAATAGAAAGAGAGAAG 60.622 42.308 1.92 0.00 33.65 2.85
8737 9674 6.114187 TGTTGGCAATAGAAAGAGAGAAGA 57.886 37.500 1.92 0.00 0.00 2.87
8738 9675 6.169094 TGTTGGCAATAGAAAGAGAGAAGAG 58.831 40.000 1.92 0.00 0.00 2.85
8739 9676 6.014242 TGTTGGCAATAGAAAGAGAGAAGAGA 60.014 38.462 1.92 0.00 0.00 3.10
8740 9677 6.805016 TGGCAATAGAAAGAGAGAAGAGAT 57.195 37.500 0.00 0.00 0.00 2.75
8741 9678 7.904558 TGGCAATAGAAAGAGAGAAGAGATA 57.095 36.000 0.00 0.00 0.00 1.98
8742 9679 8.489676 TGGCAATAGAAAGAGAGAAGAGATAT 57.510 34.615 0.00 0.00 0.00 1.63
8743 9680 8.366401 TGGCAATAGAAAGAGAGAAGAGATATG 58.634 37.037 0.00 0.00 0.00 1.78
8744 9681 8.584157 GGCAATAGAAAGAGAGAAGAGATATGA 58.416 37.037 0.00 0.00 0.00 2.15
8745 9682 9.410556 GCAATAGAAAGAGAGAAGAGATATGAC 57.589 37.037 0.00 0.00 0.00 3.06
8748 9685 9.866655 ATAGAAAGAGAGAAGAGATATGACTGT 57.133 33.333 0.00 0.00 0.00 3.55
8749 9686 8.593945 AGAAAGAGAGAAGAGATATGACTGTT 57.406 34.615 0.00 0.00 0.00 3.16
8750 9687 9.034800 AGAAAGAGAGAAGAGATATGACTGTTT 57.965 33.333 0.00 0.00 0.00 2.83
8751 9688 9.086336 GAAAGAGAGAAGAGATATGACTGTTTG 57.914 37.037 0.00 0.00 0.00 2.93
8752 9689 7.953005 AGAGAGAAGAGATATGACTGTTTGA 57.047 36.000 0.00 0.00 0.00 2.69
8753 9690 7.999679 AGAGAGAAGAGATATGACTGTTTGAG 58.000 38.462 0.00 0.00 0.00 3.02
8754 9691 7.068593 AGAGAGAAGAGATATGACTGTTTGAGG 59.931 40.741 0.00 0.00 0.00 3.86
8755 9692 6.667414 AGAGAAGAGATATGACTGTTTGAGGT 59.333 38.462 0.00 0.00 0.00 3.85
8756 9693 7.180051 AGAGAAGAGATATGACTGTTTGAGGTT 59.820 37.037 0.00 0.00 0.00 3.50
8757 9694 7.102346 AGAAGAGATATGACTGTTTGAGGTTG 58.898 38.462 0.00 0.00 0.00 3.77
8758 9695 5.738909 AGAGATATGACTGTTTGAGGTTGG 58.261 41.667 0.00 0.00 0.00 3.77
8759 9696 5.485353 AGAGATATGACTGTTTGAGGTTGGA 59.515 40.000 0.00 0.00 0.00 3.53
8760 9697 5.491982 AGATATGACTGTTTGAGGTTGGAC 58.508 41.667 0.00 0.00 0.00 4.02
8761 9698 3.576078 ATGACTGTTTGAGGTTGGACA 57.424 42.857 0.00 0.00 0.00 4.02
8762 9699 2.639065 TGACTGTTTGAGGTTGGACAC 58.361 47.619 0.00 0.00 0.00 3.67
8763 9700 2.026729 TGACTGTTTGAGGTTGGACACA 60.027 45.455 0.00 0.00 0.00 3.72
8764 9701 2.354821 GACTGTTTGAGGTTGGACACAC 59.645 50.000 0.00 0.00 0.00 3.82
8765 9702 1.676006 CTGTTTGAGGTTGGACACACC 59.324 52.381 0.00 0.00 39.54 4.16
8766 9703 1.029681 GTTTGAGGTTGGACACACCC 58.970 55.000 0.00 0.00 38.00 4.61
8767 9704 0.106419 TTTGAGGTTGGACACACCCC 60.106 55.000 0.00 0.00 38.00 4.95
8768 9705 0.991355 TTGAGGTTGGACACACCCCT 60.991 55.000 0.00 0.00 38.00 4.79
8769 9706 0.991355 TGAGGTTGGACACACCCCTT 60.991 55.000 0.00 0.00 38.00 3.95
8770 9707 0.185175 GAGGTTGGACACACCCCTTT 59.815 55.000 0.00 0.00 38.00 3.11
8771 9708 0.106217 AGGTTGGACACACCCCTTTG 60.106 55.000 0.00 0.00 38.00 2.77
8772 9709 1.739667 GTTGGACACACCCCTTTGC 59.260 57.895 0.00 0.00 38.00 3.68
8773 9710 0.755327 GTTGGACACACCCCTTTGCT 60.755 55.000 0.00 0.00 38.00 3.91
8774 9711 0.847373 TTGGACACACCCCTTTGCTA 59.153 50.000 0.00 0.00 38.00 3.49
8775 9712 0.847373 TGGACACACCCCTTTGCTAA 59.153 50.000 0.00 0.00 38.00 3.09
8776 9713 1.427368 TGGACACACCCCTTTGCTAAT 59.573 47.619 0.00 0.00 38.00 1.73
8777 9714 1.818674 GGACACACCCCTTTGCTAATG 59.181 52.381 0.00 0.00 0.00 1.90
8778 9715 2.554344 GGACACACCCCTTTGCTAATGA 60.554 50.000 0.00 0.00 0.00 2.57
8779 9716 2.488153 GACACACCCCTTTGCTAATGAC 59.512 50.000 0.00 0.00 0.00 3.06
8780 9717 2.108250 ACACACCCCTTTGCTAATGACT 59.892 45.455 0.00 0.00 0.00 3.41
8781 9718 3.329520 ACACACCCCTTTGCTAATGACTA 59.670 43.478 0.00 0.00 0.00 2.59
8782 9719 4.018415 ACACACCCCTTTGCTAATGACTAT 60.018 41.667 0.00 0.00 0.00 2.12
8783 9720 4.949856 CACACCCCTTTGCTAATGACTATT 59.050 41.667 0.00 0.00 0.00 1.73
8784 9721 5.066505 CACACCCCTTTGCTAATGACTATTC 59.933 44.000 0.00 0.00 0.00 1.75
8785 9722 5.192927 CACCCCTTTGCTAATGACTATTCA 58.807 41.667 0.00 0.00 35.73 2.57
8786 9723 5.829924 CACCCCTTTGCTAATGACTATTCAT 59.170 40.000 0.00 0.00 44.98 2.57
8801 9738 9.293404 ATGACTATTCATTAATTAGCATGTGCT 57.707 29.630 12.66 12.66 46.45 4.40
8833 9770 8.037723 TCTACTAATTAATTCCTAACACCCCC 57.962 38.462 3.39 0.00 0.00 5.40
8834 9771 6.920695 ACTAATTAATTCCTAACACCCCCT 57.079 37.500 3.39 0.00 0.00 4.79
8835 9772 7.293326 ACTAATTAATTCCTAACACCCCCTT 57.707 36.000 3.39 0.00 0.00 3.95
8836 9773 7.123383 ACTAATTAATTCCTAACACCCCCTTG 58.877 38.462 3.39 0.00 0.00 3.61
8837 9774 5.546035 ATTAATTCCTAACACCCCCTTGT 57.454 39.130 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.939837 TTCTCGCCTGCTTCTGCCG 62.940 63.158 0.00 0.00 38.71 5.69
49 50 2.046892 TTCTCGCCTGCTTCTGCC 60.047 61.111 0.00 0.00 38.71 4.85
50 51 2.105466 CCTTCTCGCCTGCTTCTGC 61.105 63.158 0.00 0.00 40.20 4.26
51 52 2.105466 GCCTTCTCGCCTGCTTCTG 61.105 63.158 0.00 0.00 0.00 3.02
52 53 2.267324 GCCTTCTCGCCTGCTTCT 59.733 61.111 0.00 0.00 0.00 2.85
53 54 2.821810 GGCCTTCTCGCCTGCTTC 60.822 66.667 0.00 0.00 46.10 3.86
98 99 3.402095 GAAGTAAGCCCGCTCCCCC 62.402 68.421 0.00 0.00 0.00 5.40
99 100 2.189784 GAAGTAAGCCCGCTCCCC 59.810 66.667 0.00 0.00 0.00 4.81
100 101 2.202892 CGAAGTAAGCCCGCTCCC 60.203 66.667 0.00 0.00 0.00 4.30
101 102 1.810030 CACGAAGTAAGCCCGCTCC 60.810 63.158 0.00 0.00 41.61 4.70
102 103 1.077089 GTCACGAAGTAAGCCCGCTC 61.077 60.000 0.00 0.00 41.61 5.03
103 104 1.080025 GTCACGAAGTAAGCCCGCT 60.080 57.895 0.00 0.00 41.61 5.52
104 105 2.098831 GGTCACGAAGTAAGCCCGC 61.099 63.158 0.00 0.00 41.61 6.13
105 106 0.037605 AAGGTCACGAAGTAAGCCCG 60.038 55.000 0.00 0.00 41.61 6.13
106 107 1.270678 ACAAGGTCACGAAGTAAGCCC 60.271 52.381 0.00 0.00 41.61 5.19
107 108 1.798813 CACAAGGTCACGAAGTAAGCC 59.201 52.381 0.00 0.00 41.61 4.35
108 109 1.798813 CCACAAGGTCACGAAGTAAGC 59.201 52.381 0.00 0.00 41.61 3.09
109 110 2.413837 CCCACAAGGTCACGAAGTAAG 58.586 52.381 0.00 0.00 41.61 2.34
110 111 1.071071 CCCCACAAGGTCACGAAGTAA 59.929 52.381 0.00 0.00 41.61 2.24
111 112 0.682852 CCCCACAAGGTCACGAAGTA 59.317 55.000 0.00 0.00 41.61 2.24
112 113 1.342672 ACCCCACAAGGTCACGAAGT 61.343 55.000 0.00 0.00 33.81 3.01
113 114 1.450211 ACCCCACAAGGTCACGAAG 59.550 57.895 0.00 0.00 33.81 3.79
114 115 3.650023 ACCCCACAAGGTCACGAA 58.350 55.556 0.00 0.00 33.81 3.85
120 121 1.909302 CAGACTATGACCCCACAAGGT 59.091 52.381 0.00 0.00 45.12 3.50
121 122 1.407437 GCAGACTATGACCCCACAAGG 60.407 57.143 0.00 0.00 0.00 3.61
122 123 1.407437 GGCAGACTATGACCCCACAAG 60.407 57.143 0.00 0.00 0.00 3.16
123 124 0.618458 GGCAGACTATGACCCCACAA 59.382 55.000 0.00 0.00 0.00 3.33
124 125 0.252696 AGGCAGACTATGACCCCACA 60.253 55.000 0.00 0.00 37.86 4.17
125 126 0.912486 AAGGCAGACTATGACCCCAC 59.088 55.000 0.00 0.00 37.86 4.61
126 127 1.668826 AAAGGCAGACTATGACCCCA 58.331 50.000 0.00 0.00 37.86 4.96
127 128 2.808906 AAAAGGCAGACTATGACCCC 57.191 50.000 0.00 0.00 37.86 4.95
128 129 5.007724 CGAAATAAAAGGCAGACTATGACCC 59.992 44.000 0.00 0.00 37.86 4.46
129 130 5.585047 ACGAAATAAAAGGCAGACTATGACC 59.415 40.000 0.00 0.00 37.86 4.02
130 131 6.312918 TGACGAAATAAAAGGCAGACTATGAC 59.687 38.462 0.00 0.00 37.09 3.06
131 132 6.312918 GTGACGAAATAAAAGGCAGACTATGA 59.687 38.462 0.00 0.00 0.00 2.15
132 133 6.092122 TGTGACGAAATAAAAGGCAGACTATG 59.908 38.462 0.00 0.00 0.00 2.23
133 134 6.170506 TGTGACGAAATAAAAGGCAGACTAT 58.829 36.000 0.00 0.00 0.00 2.12
134 135 5.543714 TGTGACGAAATAAAAGGCAGACTA 58.456 37.500 0.00 0.00 0.00 2.59
135 136 4.385825 TGTGACGAAATAAAAGGCAGACT 58.614 39.130 0.00 0.00 0.00 3.24
136 137 4.742438 TGTGACGAAATAAAAGGCAGAC 57.258 40.909 0.00 0.00 0.00 3.51
137 138 5.245531 AGATGTGACGAAATAAAAGGCAGA 58.754 37.500 0.00 0.00 0.00 4.26
138 139 5.551760 AGATGTGACGAAATAAAAGGCAG 57.448 39.130 0.00 0.00 0.00 4.85
139 140 5.584649 CCTAGATGTGACGAAATAAAAGGCA 59.415 40.000 0.00 0.00 0.00 4.75
140 141 5.504173 GCCTAGATGTGACGAAATAAAAGGC 60.504 44.000 0.00 0.00 38.00 4.35
141 142 5.817816 AGCCTAGATGTGACGAAATAAAAGG 59.182 40.000 0.00 0.00 0.00 3.11
147 148 6.127310 ACTCTTTAGCCTAGATGTGACGAAAT 60.127 38.462 0.00 0.00 0.00 2.17
186 190 3.643199 TTGTGCCTGGTTGAGCATATA 57.357 42.857 0.00 0.00 41.86 0.86
188 192 2.290832 TGATTGTGCCTGGTTGAGCATA 60.291 45.455 0.00 0.00 41.86 3.14
190 194 0.178995 TGATTGTGCCTGGTTGAGCA 60.179 50.000 0.00 0.00 36.44 4.26
238 242 2.785713 AATAACGCGTTTGGTTGCTT 57.214 40.000 31.50 4.40 0.00 3.91
291 690 8.538039 GCTAATCGAAATAGTAGTACGCTTTTT 58.462 33.333 9.54 7.98 0.00 1.94
292 691 7.703621 TGCTAATCGAAATAGTAGTACGCTTTT 59.296 33.333 9.54 0.00 0.00 2.27
293 692 7.198390 TGCTAATCGAAATAGTAGTACGCTTT 58.802 34.615 9.54 0.00 0.00 3.51
294 693 6.732154 TGCTAATCGAAATAGTAGTACGCTT 58.268 36.000 9.54 0.00 0.00 4.68
295 694 6.017275 ACTGCTAATCGAAATAGTAGTACGCT 60.017 38.462 22.13 6.03 42.23 5.07
296 695 6.141462 ACTGCTAATCGAAATAGTAGTACGC 58.859 40.000 22.13 5.60 42.23 4.42
297 696 7.854422 TGAACTGCTAATCGAAATAGTAGTACG 59.146 37.037 23.07 7.18 42.91 3.67
298 697 9.512435 TTGAACTGCTAATCGAAATAGTAGTAC 57.488 33.333 23.07 0.00 42.91 2.73
299 698 9.512435 GTTGAACTGCTAATCGAAATAGTAGTA 57.488 33.333 23.07 12.36 42.91 1.82
300 699 8.033038 TGTTGAACTGCTAATCGAAATAGTAGT 58.967 33.333 19.57 19.57 44.75 2.73
301 700 8.407457 TGTTGAACTGCTAATCGAAATAGTAG 57.593 34.615 18.62 18.62 38.56 2.57
302 701 8.766000 TTGTTGAACTGCTAATCGAAATAGTA 57.234 30.769 9.54 5.25 0.00 1.82
303 702 7.387948 ACTTGTTGAACTGCTAATCGAAATAGT 59.612 33.333 9.54 0.00 0.00 2.12
304 703 7.743104 ACTTGTTGAACTGCTAATCGAAATAG 58.257 34.615 0.00 0.00 0.00 1.73
305 704 7.667043 ACTTGTTGAACTGCTAATCGAAATA 57.333 32.000 0.00 0.00 0.00 1.40
306 705 6.560253 ACTTGTTGAACTGCTAATCGAAAT 57.440 33.333 0.00 0.00 0.00 2.17
307 706 6.183360 ACAACTTGTTGAACTGCTAATCGAAA 60.183 34.615 18.82 0.00 0.00 3.46
308 707 5.295787 ACAACTTGTTGAACTGCTAATCGAA 59.704 36.000 18.82 0.00 0.00 3.71
309 708 4.814234 ACAACTTGTTGAACTGCTAATCGA 59.186 37.500 18.82 0.00 0.00 3.59
310 709 4.905866 CACAACTTGTTGAACTGCTAATCG 59.094 41.667 18.82 0.00 0.00 3.34
311 710 4.676924 GCACAACTTGTTGAACTGCTAATC 59.323 41.667 18.82 0.00 0.00 1.75
312 711 4.610945 GCACAACTTGTTGAACTGCTAAT 58.389 39.130 18.82 0.00 0.00 1.73
313 712 3.486708 CGCACAACTTGTTGAACTGCTAA 60.487 43.478 18.82 0.00 0.00 3.09
314 713 2.031560 CGCACAACTTGTTGAACTGCTA 59.968 45.455 18.82 0.00 0.00 3.49
315 714 1.202177 CGCACAACTTGTTGAACTGCT 60.202 47.619 18.82 0.00 0.00 4.24
316 715 1.191096 CGCACAACTTGTTGAACTGC 58.809 50.000 18.82 15.99 0.00 4.40
317 716 2.176369 CACGCACAACTTGTTGAACTG 58.824 47.619 18.82 8.86 0.00 3.16
318 717 1.810151 ACACGCACAACTTGTTGAACT 59.190 42.857 18.82 0.00 0.00 3.01
319 718 1.910819 CACACGCACAACTTGTTGAAC 59.089 47.619 18.82 9.64 0.00 3.18
320 719 1.537638 ACACACGCACAACTTGTTGAA 59.462 42.857 18.82 0.00 0.00 2.69
321 720 1.135831 CACACACGCACAACTTGTTGA 60.136 47.619 18.82 0.00 0.00 3.18
322 721 1.258427 CACACACGCACAACTTGTTG 58.742 50.000 11.44 11.44 0.00 3.33
323 722 0.455972 GCACACACGCACAACTTGTT 60.456 50.000 0.00 0.00 0.00 2.83
324 723 1.136565 GCACACACGCACAACTTGT 59.863 52.632 0.00 0.00 0.00 3.16
391 795 2.513897 GAAGCGGGGGATTCGGTG 60.514 66.667 0.00 0.00 38.39 4.94
392 796 3.793888 GGAAGCGGGGGATTCGGT 61.794 66.667 0.00 0.00 40.18 4.69
393 797 2.942648 GAAGGAAGCGGGGGATTCGG 62.943 65.000 0.00 0.00 0.00 4.30
396 800 1.214992 AAGGAAGGAAGCGGGGGATT 61.215 55.000 0.00 0.00 0.00 3.01
397 801 1.619669 AAGGAAGGAAGCGGGGGAT 60.620 57.895 0.00 0.00 0.00 3.85
398 802 2.204090 AAGGAAGGAAGCGGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
399 803 2.272471 GAAGGAAGGAAGCGGGGG 59.728 66.667 0.00 0.00 0.00 5.40
471 898 1.591703 GATGGTGTCACGCAGAGGA 59.408 57.895 0.00 0.00 0.00 3.71
472 899 1.448540 GGATGGTGTCACGCAGAGG 60.449 63.158 0.00 0.00 0.00 3.69
476 903 2.031919 GGTGGATGGTGTCACGCA 59.968 61.111 0.00 0.00 34.93 5.24
501 928 3.490759 CCCGCATGTCAGTGACGC 61.491 66.667 18.17 14.72 34.95 5.19
558 985 1.336887 GGCTTACACGCTGAGAGTCAA 60.337 52.381 0.00 0.00 0.00 3.18
567 994 2.202756 GCGCTAGGCTTACACGCT 60.203 61.111 0.00 0.00 45.71 5.07
568 995 3.617538 CGCGCTAGGCTTACACGC 61.618 66.667 5.56 11.48 45.72 5.34
584 1012 0.179174 GGGATAAAAGGCAACGCACG 60.179 55.000 0.00 0.00 46.39 5.34
586 1014 1.173043 CAGGGATAAAAGGCAACGCA 58.827 50.000 0.00 0.00 46.39 5.24
835 1274 3.732849 CAAGAGGTCCCAGGCCCC 61.733 72.222 0.00 0.00 0.00 5.80
910 1349 1.076705 GGGGATTGGCTCCTTGGAC 60.077 63.158 0.00 0.00 44.28 4.02
1568 2016 9.630098 GATAATGTACCGTCCTTTATATCGAAA 57.370 33.333 0.00 0.00 0.00 3.46
1569 2017 9.017509 AGATAATGTACCGTCCTTTATATCGAA 57.982 33.333 0.00 0.00 0.00 3.71
1570 2018 8.571461 AGATAATGTACCGTCCTTTATATCGA 57.429 34.615 0.00 0.00 0.00 3.59
1586 2034 7.563556 TCCTATGTTCCACACAGAGATAATGTA 59.436 37.037 0.00 0.00 46.24 2.29
1600 2048 7.391148 AACAACATACATTCCTATGTTCCAC 57.609 36.000 2.29 0.00 42.82 4.02
1619 2067 9.724839 GATCTGTCTCAAGACTACTATAACAAC 57.275 37.037 11.23 0.00 44.99 3.32
1645 2093 2.984562 ACCAACAAAAGCTTTGGGTTG 58.015 42.857 30.99 30.99 45.76 3.77
1662 2110 1.868713 TTCCCATTAGGCGAGTACCA 58.131 50.000 0.00 0.00 34.51 3.25
1675 2123 1.143684 CATGATCCTCCCGTTTCCCAT 59.856 52.381 0.00 0.00 0.00 4.00
1693 2141 3.243907 GCCCAGCTCGATAACTTCTACAT 60.244 47.826 0.00 0.00 0.00 2.29
1697 2145 1.195115 TGCCCAGCTCGATAACTTCT 58.805 50.000 0.00 0.00 0.00 2.85
1835 2283 2.414825 GCAGCAGAGCTCTAAAACAGAC 59.585 50.000 17.75 0.00 36.40 3.51
1857 2305 1.941999 GCAGGCCCAAGTGAATCAGC 61.942 60.000 0.00 0.00 0.00 4.26
2096 2544 4.422057 TCCGATATAATCTGCCCCTTACA 58.578 43.478 0.00 0.00 0.00 2.41
2247 2705 6.697455 TCGTTCAGCTTTACATACATCAGATC 59.303 38.462 0.00 0.00 0.00 2.75
2371 2829 0.264657 AGGGGAAAAAGTGGTTGGCT 59.735 50.000 0.00 0.00 0.00 4.75
2433 2891 6.376864 CCTCACAAATCCATGTACCAATGTAA 59.623 38.462 0.00 0.00 30.84 2.41
2448 2906 2.622064 ACGGATAGGCCTCACAAATC 57.378 50.000 9.68 6.16 0.00 2.17
2706 3165 6.877611 AAATGAGAACGTTACAAACTGGAT 57.122 33.333 0.00 0.00 0.00 3.41
2733 3192 0.725686 CAGCAGTTTGCCTGAGATCG 59.274 55.000 0.00 0.00 46.52 3.69
2964 3423 6.568869 TGTGGTAAACAAAGGTTCTGATTTG 58.431 36.000 1.71 1.71 41.22 2.32
3032 3491 2.438614 CAGGGCTCGAGTCTCGGA 60.439 66.667 21.63 8.11 40.88 4.55
3072 3531 0.954452 CAGAAGGTTGTTGGGCTGAC 59.046 55.000 0.00 0.00 0.00 3.51
3633 4092 2.306805 TGCTTCATCATCCTGTTCCTGT 59.693 45.455 0.00 0.00 0.00 4.00
4104 4563 2.050836 TTTCCCGAACCTCAGCTGCA 62.051 55.000 9.47 0.00 0.00 4.41
4510 4970 9.643693 CAAATGAAGATTTATAACTGGCAAACT 57.356 29.630 0.00 0.00 30.20 2.66
4562 5022 3.427233 GCTTGAAACTCATCAGATGGCAC 60.427 47.826 10.67 0.00 0.00 5.01
4563 5023 2.751259 GCTTGAAACTCATCAGATGGCA 59.249 45.455 10.67 0.00 0.00 4.92
4585 5045 4.735369 TCTCTTCACTCTCTCCTTCAACT 58.265 43.478 0.00 0.00 0.00 3.16
4882 5640 4.445452 AAATTGGCTCATGTGTCATGAC 57.555 40.909 19.27 19.27 0.00 3.06
4889 5648 7.349711 CAAAAGAAGAAAAATTGGCTCATGTG 58.650 34.615 0.00 0.00 0.00 3.21
4899 5658 7.603180 ACTAGAGGCCAAAAGAAGAAAAATT 57.397 32.000 5.01 0.00 0.00 1.82
5303 6080 7.448777 TGCAAACTTACAGGATAACCACATTAA 59.551 33.333 0.00 0.00 38.94 1.40
5448 6237 1.475034 GGTCACTTGGTCAGTTCAGCA 60.475 52.381 0.00 0.00 30.92 4.41
5518 6311 3.914426 ATGAGGACACACTGGGAATAC 57.086 47.619 0.00 0.00 0.00 1.89
5527 6320 3.003480 GCCTAAGTCAATGAGGACACAC 58.997 50.000 0.00 0.00 40.29 3.82
5528 6321 2.906389 AGCCTAAGTCAATGAGGACACA 59.094 45.455 0.00 0.00 40.29 3.72
5529 6322 3.618690 AGCCTAAGTCAATGAGGACAC 57.381 47.619 0.00 0.00 40.29 3.67
5564 6357 0.892358 AGTGGAGTTGCATGCACCAG 60.892 55.000 24.49 0.00 42.00 4.00
5719 6512 3.436243 AGGTGTTGGAAAGTGGAACAAA 58.564 40.909 0.00 0.00 44.16 2.83
5843 6636 3.198853 AGGATAGGTTTGCTCAGGAGTTC 59.801 47.826 0.00 0.00 0.00 3.01
6014 6808 3.871006 CCACGCTAATTCTCAGTATGCAA 59.129 43.478 0.00 0.00 34.76 4.08
6139 6933 4.705110 TTGGAAAACCATCTCACAGAGA 57.295 40.909 0.00 0.00 43.20 3.10
6140 6934 6.404074 GCTTATTGGAAAACCATCTCACAGAG 60.404 42.308 0.00 0.00 0.00 3.35
6503 7306 1.758440 TACATCCTCTCCGCCCATGC 61.758 60.000 0.00 0.00 0.00 4.06
6577 7380 0.521291 TATCAAACAGTTGCGCCAGC 59.479 50.000 4.18 0.00 45.41 4.85
6587 7390 4.913335 ATGCTTCTGCCATATCAAACAG 57.087 40.909 0.00 0.00 38.71 3.16
6656 7459 0.178873 ACCACCCTCCTCTTGGCTAA 60.179 55.000 0.00 0.00 33.25 3.09
6718 7529 2.032528 TTCCAGGTTCCAGCTGCG 59.967 61.111 8.66 1.56 42.05 5.18
6762 7605 0.606673 GTTCTCTTCCCAGCCACCAC 60.607 60.000 0.00 0.00 0.00 4.16
6769 7612 3.743396 CGTTCTCTTTGTTCTCTTCCCAG 59.257 47.826 0.00 0.00 0.00 4.45
6787 7630 4.760715 TCTATGGTATCAGAGCCTACGTTC 59.239 45.833 0.00 0.00 32.61 3.95
6806 7649 2.158914 TGATCGGTGCATGCAACTCTAT 60.159 45.455 31.64 21.68 0.00 1.98
6823 7666 1.300481 GGCTTTCCGGCTAACTGATC 58.700 55.000 0.00 0.00 34.85 2.92
6951 7794 9.108284 CTGTTTTAACACATTCTTGGGAAAAAT 57.892 29.630 0.00 0.00 33.47 1.82
6993 7838 8.721019 AATTGTTTTATATGTGGCATGAAAGG 57.279 30.769 0.00 0.00 0.00 3.11
7077 7922 4.651503 GGAAGAGAGAGAGAGAGAGAGAGA 59.348 50.000 0.00 0.00 0.00 3.10
7078 7923 4.406972 TGGAAGAGAGAGAGAGAGAGAGAG 59.593 50.000 0.00 0.00 0.00 3.20
7079 7924 4.162320 GTGGAAGAGAGAGAGAGAGAGAGA 59.838 50.000 0.00 0.00 0.00 3.10
7080 7925 4.446371 GTGGAAGAGAGAGAGAGAGAGAG 58.554 52.174 0.00 0.00 0.00 3.20
7081 7926 3.199946 GGTGGAAGAGAGAGAGAGAGAGA 59.800 52.174 0.00 0.00 0.00 3.10
7082 7927 3.200825 AGGTGGAAGAGAGAGAGAGAGAG 59.799 52.174 0.00 0.00 0.00 3.20
7083 7928 3.054434 CAGGTGGAAGAGAGAGAGAGAGA 60.054 52.174 0.00 0.00 0.00 3.10
7084 7929 3.054434 TCAGGTGGAAGAGAGAGAGAGAG 60.054 52.174 0.00 0.00 0.00 3.20
7085 7930 2.916269 TCAGGTGGAAGAGAGAGAGAGA 59.084 50.000 0.00 0.00 0.00 3.10
7086 7931 3.364460 TCAGGTGGAAGAGAGAGAGAG 57.636 52.381 0.00 0.00 0.00 3.20
7104 7949 7.068103 AGAGAACATAACCACAAACATGTTTCA 59.932 33.333 20.85 3.26 40.67 2.69
7199 8044 7.592533 GCAATTCCATGTGCATAATTAGTAGTG 59.407 37.037 1.41 0.00 40.58 2.74
7632 8484 7.928873 AGGAGGGTTAATAGAAATTTCTCACA 58.071 34.615 23.70 7.78 38.70 3.58
7633 8485 8.268605 AGAGGAGGGTTAATAGAAATTTCTCAC 58.731 37.037 23.70 15.26 38.70 3.51
7722 8592 5.189736 AGGTTATTTCTGCTCTGGTGTATCA 59.810 40.000 0.00 0.00 0.00 2.15
7751 8622 5.870433 GGGTTAATAAAAATGTTGGGGAACG 59.130 40.000 0.00 0.00 0.00 3.95
7777 8648 6.407412 CCTCCTGTTTAATGCATGTAGAGAGA 60.407 42.308 0.00 0.00 0.00 3.10
7899 8770 3.340928 CAGTCAAAGCAGGTGATGATGA 58.659 45.455 0.00 0.00 0.00 2.92
7970 8841 4.387026 TCACTTCATTGTTTCCCCTGAT 57.613 40.909 0.00 0.00 0.00 2.90
8053 8924 2.487265 GCACAAGGTGGAAGGAAGAAGA 60.487 50.000 0.00 0.00 33.64 2.87
8054 8925 1.882623 GCACAAGGTGGAAGGAAGAAG 59.117 52.381 0.00 0.00 33.64 2.85
8055 8926 1.214175 TGCACAAGGTGGAAGGAAGAA 59.786 47.619 0.00 0.00 33.64 2.52
8119 8993 3.629142 ATACACCTACTGGTTGAAGGC 57.371 47.619 0.00 0.00 46.05 4.35
8255 9129 3.202818 AGGTGACAAGCCATGAATCCATA 59.797 43.478 0.00 0.00 0.00 2.74
8283 9157 0.330941 TATGACAGTGGCCATGGCAA 59.669 50.000 36.56 25.95 39.65 4.52
8315 9189 5.245531 TCACTAGCAGTTCCCAATAAACAG 58.754 41.667 0.00 0.00 0.00 3.16
8346 9251 9.784531 ATCAACTTTATACAGAATCATACAGGG 57.215 33.333 0.00 0.00 0.00 4.45
8457 9363 4.991056 CGTGGCATATTTACTCAGCTACAT 59.009 41.667 0.00 0.00 36.63 2.29
8459 9365 4.617959 TCGTGGCATATTTACTCAGCTAC 58.382 43.478 0.00 0.00 33.99 3.58
8460 9366 4.929819 TCGTGGCATATTTACTCAGCTA 57.070 40.909 0.00 0.00 0.00 3.32
8461 9367 3.819564 TCGTGGCATATTTACTCAGCT 57.180 42.857 0.00 0.00 0.00 4.24
8462 9368 3.433615 GGATCGTGGCATATTTACTCAGC 59.566 47.826 0.00 0.00 0.00 4.26
8463 9369 4.449068 GTGGATCGTGGCATATTTACTCAG 59.551 45.833 0.00 0.00 0.00 3.35
8464 9370 4.377021 GTGGATCGTGGCATATTTACTCA 58.623 43.478 0.00 0.00 0.00 3.41
8465 9371 3.746492 GGTGGATCGTGGCATATTTACTC 59.254 47.826 0.00 0.00 0.00 2.59
8466 9372 3.135712 TGGTGGATCGTGGCATATTTACT 59.864 43.478 0.00 0.00 0.00 2.24
8468 9374 3.738982 CTGGTGGATCGTGGCATATTTA 58.261 45.455 0.00 0.00 0.00 1.40
8470 9376 1.815408 GCTGGTGGATCGTGGCATATT 60.815 52.381 0.00 0.00 0.00 1.28
8471 9377 0.250467 GCTGGTGGATCGTGGCATAT 60.250 55.000 0.00 0.00 0.00 1.78
8479 9387 0.176449 TGATGACAGCTGGTGGATCG 59.824 55.000 19.93 0.00 0.00 3.69
8485 9393 5.316167 TGTTTATTTCTGATGACAGCTGGT 58.684 37.500 19.93 3.31 43.17 4.00
8555 9492 9.927668 AATATTTAAGTGTGGGAACAATTTCTG 57.072 29.630 0.00 0.00 46.06 3.02
8581 9518 8.067784 CGCTTTCAATCTTGTTTTACTCTAACA 58.932 33.333 0.00 0.00 33.92 2.41
8582 9519 8.280497 TCGCTTTCAATCTTGTTTTACTCTAAC 58.720 33.333 0.00 0.00 0.00 2.34
8583 9520 8.373048 TCGCTTTCAATCTTGTTTTACTCTAA 57.627 30.769 0.00 0.00 0.00 2.10
8584 9521 7.956420 TCGCTTTCAATCTTGTTTTACTCTA 57.044 32.000 0.00 0.00 0.00 2.43
8585 9522 6.861065 TCGCTTTCAATCTTGTTTTACTCT 57.139 33.333 0.00 0.00 0.00 3.24
8586 9523 7.113544 CCTTTCGCTTTCAATCTTGTTTTACTC 59.886 37.037 0.00 0.00 0.00 2.59
8587 9524 6.918022 CCTTTCGCTTTCAATCTTGTTTTACT 59.082 34.615 0.00 0.00 0.00 2.24
8588 9525 6.915843 TCCTTTCGCTTTCAATCTTGTTTTAC 59.084 34.615 0.00 0.00 0.00 2.01
8589 9526 6.915843 GTCCTTTCGCTTTCAATCTTGTTTTA 59.084 34.615 0.00 0.00 0.00 1.52
8590 9527 5.748630 GTCCTTTCGCTTTCAATCTTGTTTT 59.251 36.000 0.00 0.00 0.00 2.43
8591 9528 5.163561 TGTCCTTTCGCTTTCAATCTTGTTT 60.164 36.000 0.00 0.00 0.00 2.83
8592 9529 4.338118 TGTCCTTTCGCTTTCAATCTTGTT 59.662 37.500 0.00 0.00 0.00 2.83
8593 9530 3.882888 TGTCCTTTCGCTTTCAATCTTGT 59.117 39.130 0.00 0.00 0.00 3.16
8594 9531 4.488126 TGTCCTTTCGCTTTCAATCTTG 57.512 40.909 0.00 0.00 0.00 3.02
8595 9532 5.241506 TGATTGTCCTTTCGCTTTCAATCTT 59.758 36.000 13.94 0.00 40.60 2.40
8596 9533 4.761739 TGATTGTCCTTTCGCTTTCAATCT 59.238 37.500 13.94 0.00 40.60 2.40
8597 9534 5.046910 TGATTGTCCTTTCGCTTTCAATC 57.953 39.130 0.00 0.00 40.47 2.67
8598 9535 4.520492 ACTGATTGTCCTTTCGCTTTCAAT 59.480 37.500 0.00 0.00 0.00 2.57
8599 9536 3.882888 ACTGATTGTCCTTTCGCTTTCAA 59.117 39.130 0.00 0.00 0.00 2.69
8600 9537 3.476552 ACTGATTGTCCTTTCGCTTTCA 58.523 40.909 0.00 0.00 0.00 2.69
8601 9538 4.071875 GACTGATTGTCCTTTCGCTTTC 57.928 45.455 0.00 0.00 39.69 2.62
8612 9549 3.140325 TGGAAACCAGGACTGATTGTC 57.860 47.619 0.00 0.00 44.63 3.18
8613 9550 3.814504 ATGGAAACCAGGACTGATTGT 57.185 42.857 0.00 0.00 36.75 2.71
8614 9551 4.081406 TCAATGGAAACCAGGACTGATTG 58.919 43.478 0.00 2.41 36.75 2.67
8615 9552 4.387026 TCAATGGAAACCAGGACTGATT 57.613 40.909 0.00 0.00 36.75 2.57
8616 9553 4.598036 ATCAATGGAAACCAGGACTGAT 57.402 40.909 0.00 0.00 36.75 2.90
8617 9554 4.043310 AGAATCAATGGAAACCAGGACTGA 59.957 41.667 0.00 0.00 36.75 3.41
8618 9555 4.338879 AGAATCAATGGAAACCAGGACTG 58.661 43.478 0.00 0.00 36.75 3.51
8619 9556 4.664688 AGAATCAATGGAAACCAGGACT 57.335 40.909 0.00 0.00 36.75 3.85
8620 9557 6.434340 AGTTAAGAATCAATGGAAACCAGGAC 59.566 38.462 0.00 0.00 36.75 3.85
8621 9558 6.552008 AGTTAAGAATCAATGGAAACCAGGA 58.448 36.000 0.00 0.00 36.75 3.86
8622 9559 6.840780 AGTTAAGAATCAATGGAAACCAGG 57.159 37.500 0.00 0.00 36.75 4.45
8642 9579 9.261035 CCACCTCTTCCAGATGTATATATAGTT 57.739 37.037 0.00 0.00 0.00 2.24
8643 9580 8.624670 TCCACCTCTTCCAGATGTATATATAGT 58.375 37.037 0.00 0.00 0.00 2.12
8644 9581 9.480861 TTCCACCTCTTCCAGATGTATATATAG 57.519 37.037 0.00 0.00 0.00 1.31
8645 9582 9.837681 TTTCCACCTCTTCCAGATGTATATATA 57.162 33.333 0.00 0.00 0.00 0.86
8646 9583 8.742125 TTTCCACCTCTTCCAGATGTATATAT 57.258 34.615 0.00 0.00 0.00 0.86
8647 9584 8.010697 TCTTTCCACCTCTTCCAGATGTATATA 58.989 37.037 0.00 0.00 0.00 0.86
8648 9585 6.846505 TCTTTCCACCTCTTCCAGATGTATAT 59.153 38.462 0.00 0.00 0.00 0.86
8649 9586 6.202331 TCTTTCCACCTCTTCCAGATGTATA 58.798 40.000 0.00 0.00 0.00 1.47
8650 9587 5.032846 TCTTTCCACCTCTTCCAGATGTAT 58.967 41.667 0.00 0.00 0.00 2.29
8651 9588 4.425772 TCTTTCCACCTCTTCCAGATGTA 58.574 43.478 0.00 0.00 0.00 2.29
8652 9589 3.251484 TCTTTCCACCTCTTCCAGATGT 58.749 45.455 0.00 0.00 0.00 3.06
8653 9590 3.988976 TCTTTCCACCTCTTCCAGATG 57.011 47.619 0.00 0.00 0.00 2.90
8654 9591 4.171234 TCTTCTTTCCACCTCTTCCAGAT 58.829 43.478 0.00 0.00 0.00 2.90
8655 9592 3.580458 CTCTTCTTTCCACCTCTTCCAGA 59.420 47.826 0.00 0.00 0.00 3.86
8656 9593 3.307339 CCTCTTCTTTCCACCTCTTCCAG 60.307 52.174 0.00 0.00 0.00 3.86
8657 9594 2.639839 CCTCTTCTTTCCACCTCTTCCA 59.360 50.000 0.00 0.00 0.00 3.53
8658 9595 2.640332 ACCTCTTCTTTCCACCTCTTCC 59.360 50.000 0.00 0.00 0.00 3.46
8659 9596 3.071747 ACACCTCTTCTTTCCACCTCTTC 59.928 47.826 0.00 0.00 0.00 2.87
8660 9597 3.049344 ACACCTCTTCTTTCCACCTCTT 58.951 45.455 0.00 0.00 0.00 2.85
8661 9598 2.635427 GACACCTCTTCTTTCCACCTCT 59.365 50.000 0.00 0.00 0.00 3.69
8662 9599 2.635427 AGACACCTCTTCTTTCCACCTC 59.365 50.000 0.00 0.00 0.00 3.85
8663 9600 2.370189 CAGACACCTCTTCTTTCCACCT 59.630 50.000 0.00 0.00 0.00 4.00
8664 9601 2.104963 ACAGACACCTCTTCTTTCCACC 59.895 50.000 0.00 0.00 0.00 4.61
8665 9602 3.477210 ACAGACACCTCTTCTTTCCAC 57.523 47.619 0.00 0.00 0.00 4.02
8666 9603 3.454447 TGAACAGACACCTCTTCTTTCCA 59.546 43.478 0.00 0.00 0.00 3.53
8667 9604 4.061596 CTGAACAGACACCTCTTCTTTCC 58.938 47.826 0.00 0.00 0.00 3.13
8668 9605 4.950050 TCTGAACAGACACCTCTTCTTTC 58.050 43.478 0.00 0.00 31.41 2.62
8669 9606 4.651503 TCTCTGAACAGACACCTCTTCTTT 59.348 41.667 0.00 0.00 33.22 2.52
8670 9607 4.038642 GTCTCTGAACAGACACCTCTTCTT 59.961 45.833 0.00 0.00 42.25 2.52
8671 9608 3.572255 GTCTCTGAACAGACACCTCTTCT 59.428 47.826 0.00 0.00 42.25 2.85
8672 9609 3.319405 TGTCTCTGAACAGACACCTCTTC 59.681 47.826 7.52 0.00 46.43 2.87
8673 9610 3.300388 TGTCTCTGAACAGACACCTCTT 58.700 45.455 7.52 0.00 46.43 2.85
8674 9611 2.950781 TGTCTCTGAACAGACACCTCT 58.049 47.619 7.52 0.00 46.43 3.69
8680 9617 2.167487 GGAGGGATGTCTCTGAACAGAC 59.833 54.545 0.00 0.00 42.90 3.51
8681 9618 2.225369 TGGAGGGATGTCTCTGAACAGA 60.225 50.000 4.45 4.45 34.39 3.41
8682 9619 2.168106 CTGGAGGGATGTCTCTGAACAG 59.832 54.545 0.00 0.00 34.39 3.16
8683 9620 2.182827 CTGGAGGGATGTCTCTGAACA 58.817 52.381 0.00 0.00 34.39 3.18
8684 9621 2.461695 TCTGGAGGGATGTCTCTGAAC 58.538 52.381 0.00 0.00 34.39 3.18
8685 9622 2.834549 GTTCTGGAGGGATGTCTCTGAA 59.165 50.000 0.00 0.00 34.39 3.02
8686 9623 2.225369 TGTTCTGGAGGGATGTCTCTGA 60.225 50.000 0.00 0.00 34.39 3.27
8687 9624 2.093764 GTGTTCTGGAGGGATGTCTCTG 60.094 54.545 0.00 0.00 34.39 3.35
8688 9625 2.183679 GTGTTCTGGAGGGATGTCTCT 58.816 52.381 0.00 0.00 34.39 3.10
8689 9626 1.134965 CGTGTTCTGGAGGGATGTCTC 60.135 57.143 0.00 0.00 0.00 3.36
8690 9627 0.898320 CGTGTTCTGGAGGGATGTCT 59.102 55.000 0.00 0.00 0.00 3.41
8691 9628 0.608640 ACGTGTTCTGGAGGGATGTC 59.391 55.000 0.00 0.00 0.00 3.06
8692 9629 0.321671 CACGTGTTCTGGAGGGATGT 59.678 55.000 7.58 0.00 0.00 3.06
8693 9630 1.021390 GCACGTGTTCTGGAGGGATG 61.021 60.000 18.38 0.00 0.00 3.51
8694 9631 1.194781 AGCACGTGTTCTGGAGGGAT 61.195 55.000 18.38 0.00 0.00 3.85
8695 9632 1.407656 AAGCACGTGTTCTGGAGGGA 61.408 55.000 18.38 0.00 0.00 4.20
8696 9633 1.071471 AAGCACGTGTTCTGGAGGG 59.929 57.895 18.38 0.00 0.00 4.30
8697 9634 0.532862 ACAAGCACGTGTTCTGGAGG 60.533 55.000 18.38 1.38 0.00 4.30
8698 9635 1.003545 CAACAAGCACGTGTTCTGGAG 60.004 52.381 18.38 5.53 39.73 3.86
8699 9636 1.013596 CAACAAGCACGTGTTCTGGA 58.986 50.000 18.38 0.00 39.73 3.86
8700 9637 0.029300 CCAACAAGCACGTGTTCTGG 59.971 55.000 18.38 14.42 39.73 3.86
8701 9638 0.592247 GCCAACAAGCACGTGTTCTG 60.592 55.000 18.38 13.88 39.73 3.02
8702 9639 1.029408 TGCCAACAAGCACGTGTTCT 61.029 50.000 18.38 3.34 39.73 3.01
8703 9640 0.179150 TTGCCAACAAGCACGTGTTC 60.179 50.000 18.38 0.57 43.97 3.18
8704 9641 0.459489 ATTGCCAACAAGCACGTGTT 59.541 45.000 18.38 8.60 43.97 3.32
8705 9642 1.266718 CTATTGCCAACAAGCACGTGT 59.733 47.619 18.38 0.68 43.97 4.49
8706 9643 1.535028 TCTATTGCCAACAAGCACGTG 59.465 47.619 12.28 12.28 43.97 4.49
8707 9644 1.890876 TCTATTGCCAACAAGCACGT 58.109 45.000 0.00 0.00 43.97 4.49
8708 9645 2.987413 TTCTATTGCCAACAAGCACG 57.013 45.000 0.00 0.00 43.97 5.34
8709 9646 4.216257 TCTCTTTCTATTGCCAACAAGCAC 59.784 41.667 0.00 0.00 43.97 4.40
8710 9647 4.397420 TCTCTTTCTATTGCCAACAAGCA 58.603 39.130 0.00 0.00 39.69 3.91
8711 9648 4.697352 TCTCTCTTTCTATTGCCAACAAGC 59.303 41.667 0.00 0.00 39.69 4.01
8712 9649 6.652481 TCTTCTCTCTTTCTATTGCCAACAAG 59.348 38.462 0.00 0.00 39.69 3.16
8713 9650 6.533730 TCTTCTCTCTTTCTATTGCCAACAA 58.466 36.000 0.00 0.00 40.87 2.83
8714 9651 6.014242 TCTCTTCTCTCTTTCTATTGCCAACA 60.014 38.462 0.00 0.00 0.00 3.33
8715 9652 6.402222 TCTCTTCTCTCTTTCTATTGCCAAC 58.598 40.000 0.00 0.00 0.00 3.77
8716 9653 6.611613 TCTCTTCTCTCTTTCTATTGCCAA 57.388 37.500 0.00 0.00 0.00 4.52
8717 9654 6.805016 ATCTCTTCTCTCTTTCTATTGCCA 57.195 37.500 0.00 0.00 0.00 4.92
8718 9655 8.584157 TCATATCTCTTCTCTCTTTCTATTGCC 58.416 37.037 0.00 0.00 0.00 4.52
8719 9656 9.410556 GTCATATCTCTTCTCTCTTTCTATTGC 57.589 37.037 0.00 0.00 0.00 3.56
8722 9659 9.866655 ACAGTCATATCTCTTCTCTCTTTCTAT 57.133 33.333 0.00 0.00 0.00 1.98
8723 9660 9.693739 AACAGTCATATCTCTTCTCTCTTTCTA 57.306 33.333 0.00 0.00 0.00 2.10
8724 9661 8.593945 AACAGTCATATCTCTTCTCTCTTTCT 57.406 34.615 0.00 0.00 0.00 2.52
8725 9662 9.086336 CAAACAGTCATATCTCTTCTCTCTTTC 57.914 37.037 0.00 0.00 0.00 2.62
8726 9663 8.811017 TCAAACAGTCATATCTCTTCTCTCTTT 58.189 33.333 0.00 0.00 0.00 2.52
8727 9664 8.359875 TCAAACAGTCATATCTCTTCTCTCTT 57.640 34.615 0.00 0.00 0.00 2.85
8728 9665 7.068593 CCTCAAACAGTCATATCTCTTCTCTCT 59.931 40.741 0.00 0.00 0.00 3.10
8729 9666 7.147915 ACCTCAAACAGTCATATCTCTTCTCTC 60.148 40.741 0.00 0.00 0.00 3.20
8730 9667 6.667414 ACCTCAAACAGTCATATCTCTTCTCT 59.333 38.462 0.00 0.00 0.00 3.10
8731 9668 6.872920 ACCTCAAACAGTCATATCTCTTCTC 58.127 40.000 0.00 0.00 0.00 2.87
8732 9669 6.865834 ACCTCAAACAGTCATATCTCTTCT 57.134 37.500 0.00 0.00 0.00 2.85
8733 9670 6.314896 CCAACCTCAAACAGTCATATCTCTTC 59.685 42.308 0.00 0.00 0.00 2.87
8734 9671 6.013379 TCCAACCTCAAACAGTCATATCTCTT 60.013 38.462 0.00 0.00 0.00 2.85
8735 9672 5.485353 TCCAACCTCAAACAGTCATATCTCT 59.515 40.000 0.00 0.00 0.00 3.10
8736 9673 5.582665 GTCCAACCTCAAACAGTCATATCTC 59.417 44.000 0.00 0.00 0.00 2.75
8737 9674 5.013079 TGTCCAACCTCAAACAGTCATATCT 59.987 40.000 0.00 0.00 0.00 1.98
8738 9675 5.122396 GTGTCCAACCTCAAACAGTCATATC 59.878 44.000 0.00 0.00 0.00 1.63
8739 9676 5.003804 GTGTCCAACCTCAAACAGTCATAT 58.996 41.667 0.00 0.00 0.00 1.78
8740 9677 4.141597 TGTGTCCAACCTCAAACAGTCATA 60.142 41.667 0.00 0.00 0.00 2.15
8741 9678 3.214328 GTGTCCAACCTCAAACAGTCAT 58.786 45.455 0.00 0.00 0.00 3.06
8742 9679 2.026729 TGTGTCCAACCTCAAACAGTCA 60.027 45.455 0.00 0.00 0.00 3.41
8743 9680 2.354821 GTGTGTCCAACCTCAAACAGTC 59.645 50.000 0.00 0.00 0.00 3.51
8744 9681 2.365582 GTGTGTCCAACCTCAAACAGT 58.634 47.619 0.00 0.00 0.00 3.55
8745 9682 1.676006 GGTGTGTCCAACCTCAAACAG 59.324 52.381 0.00 0.00 34.66 3.16
8746 9683 1.683629 GGGTGTGTCCAACCTCAAACA 60.684 52.381 0.00 0.00 45.71 2.83
8747 9684 1.029681 GGGTGTGTCCAACCTCAAAC 58.970 55.000 0.00 0.00 45.71 2.93
8748 9685 3.505835 GGGTGTGTCCAACCTCAAA 57.494 52.632 0.00 0.00 45.71 2.69
8754 9691 0.755327 AGCAAAGGGGTGTGTCCAAC 60.755 55.000 0.00 0.00 38.11 3.77
8755 9692 0.847373 TAGCAAAGGGGTGTGTCCAA 59.153 50.000 0.00 0.00 38.11 3.53
8756 9693 0.847373 TTAGCAAAGGGGTGTGTCCA 59.153 50.000 0.00 0.00 38.11 4.02
8757 9694 1.818674 CATTAGCAAAGGGGTGTGTCC 59.181 52.381 0.00 0.00 0.00 4.02
8758 9695 2.488153 GTCATTAGCAAAGGGGTGTGTC 59.512 50.000 0.00 0.00 0.00 3.67
8759 9696 2.108250 AGTCATTAGCAAAGGGGTGTGT 59.892 45.455 0.00 0.00 0.00 3.72
8760 9697 2.795329 AGTCATTAGCAAAGGGGTGTG 58.205 47.619 0.00 0.00 0.00 3.82
8761 9698 4.862641 ATAGTCATTAGCAAAGGGGTGT 57.137 40.909 0.00 0.00 0.00 4.16
8762 9699 5.192927 TGAATAGTCATTAGCAAAGGGGTG 58.807 41.667 0.00 0.00 0.00 4.61
8763 9700 5.450818 TGAATAGTCATTAGCAAAGGGGT 57.549 39.130 0.00 0.00 0.00 4.95
8774 9711 9.903682 GCACATGCTAATTAATGAATAGTCATT 57.096 29.630 20.92 20.92 45.54 2.57
8807 9744 8.666821 GGGGGTGTTAGGAATTAATTAGTAGAT 58.333 37.037 0.00 0.00 0.00 1.98
8808 9745 7.853003 AGGGGGTGTTAGGAATTAATTAGTAGA 59.147 37.037 0.00 0.00 0.00 2.59
8809 9746 8.042286 AGGGGGTGTTAGGAATTAATTAGTAG 57.958 38.462 0.00 0.00 0.00 2.57
8810 9747 8.276477 CAAGGGGGTGTTAGGAATTAATTAGTA 58.724 37.037 0.00 0.00 0.00 1.82
8811 9748 6.920695 AGGGGGTGTTAGGAATTAATTAGT 57.079 37.500 0.00 0.00 0.00 2.24
8812 9749 7.123383 ACAAGGGGGTGTTAGGAATTAATTAG 58.877 38.462 0.00 0.00 0.00 1.73
8813 9750 7.046891 ACAAGGGGGTGTTAGGAATTAATTA 57.953 36.000 0.00 0.00 0.00 1.40
8814 9751 5.910931 ACAAGGGGGTGTTAGGAATTAATT 58.089 37.500 0.00 0.00 0.00 1.40
8815 9752 5.546035 ACAAGGGGGTGTTAGGAATTAAT 57.454 39.130 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.