Multiple sequence alignment - TraesCS5D01G104400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G104400 chr5D 100.000 5239 0 0 1 5239 118043411 118048649 0.000000e+00 9675
1 TraesCS5D01G104400 chr5A 94.626 4615 196 29 517 5118 127566284 127570859 0.000000e+00 7101
2 TraesCS5D01G104400 chr5A 91.371 197 17 0 240 436 127565674 127565870 2.400000e-68 270
3 TraesCS5D01G104400 chr5A 94.565 92 5 0 5148 5239 127570860 127570951 5.470000e-30 143
4 TraesCS5D01G104400 chr5B 95.781 3484 126 13 760 4234 128818797 128815326 0.000000e+00 5600
5 TraesCS5D01G104400 chr5B 89.336 844 71 12 4278 5118 128814944 128814117 0.000000e+00 1042
6 TraesCS5D01G104400 chr5B 96.739 92 3 0 5148 5239 128814116 128814025 2.530000e-33 154
7 TraesCS5D01G104400 chr7A 79.351 339 60 8 2 331 4687539 4687202 4.080000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G104400 chr5D 118043411 118048649 5238 False 9675.000000 9675 100.000000 1 5239 1 chr5D.!!$F1 5238
1 TraesCS5D01G104400 chr5A 127565674 127570951 5277 False 2504.666667 7101 93.520667 240 5239 3 chr5A.!!$F1 4999
2 TraesCS5D01G104400 chr5B 128814025 128818797 4772 True 2265.333333 5600 93.952000 760 5239 3 chr5B.!!$R1 4479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 463 0.035152 TGGTGGCATAGGAACTGCAG 60.035 55.000 13.48 13.48 41.52 4.41 F
475 476 0.248565 ACTGCAGATGACGCTGATGT 59.751 50.000 23.35 0.00 38.14 3.06 F
477 478 0.533951 TGCAGATGACGCTGATGTCT 59.466 50.000 0.00 0.00 39.64 3.41 F
1999 2343 0.103572 GCTTGTTGCATATGGGCAGG 59.896 55.000 4.56 0.00 45.88 4.85 F
2307 2651 1.328680 GCTGGATACGTGCAACATGAG 59.671 52.381 0.00 0.00 42.51 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1760 0.320771 GCATCTGGTGGTATAGCCCG 60.321 60.000 0.00 0.00 36.04 6.13 R
1518 1862 1.152860 TTGGACATGCACCAACCGT 60.153 52.632 17.37 0.00 41.64 4.83 R
2307 2651 1.412343 TCAAGGGCCTCTTTGCAAAAC 59.588 47.619 13.84 3.19 32.41 2.43 R
2857 3201 1.076332 GACACATCGTTCCTTTCGGG 58.924 55.000 0.00 0.00 0.00 5.14 R
4271 4620 0.320771 CGGCTGGTAGCATATGGACC 60.321 60.000 4.56 0.00 44.75 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.057548 CAGCATGCAGGGCGACAA 61.058 61.111 21.98 0.00 36.08 3.18
21 22 2.749044 AGCATGCAGGGCGACAAG 60.749 61.111 21.98 0.00 36.08 3.16
39 40 2.395651 GCTGCAGAGCATGAAGAGG 58.604 57.895 20.43 0.00 45.46 3.69
40 41 1.096386 GCTGCAGAGCATGAAGAGGG 61.096 60.000 20.43 0.00 45.46 4.30
41 42 1.077930 TGCAGAGCATGAAGAGGGC 60.078 57.895 0.00 0.00 31.71 5.19
42 43 2.178890 GCAGAGCATGAAGAGGGCG 61.179 63.158 0.00 0.00 0.00 6.13
43 44 1.519246 CAGAGCATGAAGAGGGCGA 59.481 57.895 0.00 0.00 0.00 5.54
44 45 0.106335 CAGAGCATGAAGAGGGCGAT 59.894 55.000 0.00 0.00 0.00 4.58
45 46 0.106335 AGAGCATGAAGAGGGCGATG 59.894 55.000 0.00 0.00 0.00 3.84
46 47 0.105593 GAGCATGAAGAGGGCGATGA 59.894 55.000 0.00 0.00 0.00 2.92
47 48 0.543277 AGCATGAAGAGGGCGATGAA 59.457 50.000 0.00 0.00 0.00 2.57
48 49 0.942962 GCATGAAGAGGGCGATGAAG 59.057 55.000 0.00 0.00 0.00 3.02
49 50 1.745141 GCATGAAGAGGGCGATGAAGT 60.745 52.381 0.00 0.00 0.00 3.01
50 51 2.636830 CATGAAGAGGGCGATGAAGTT 58.363 47.619 0.00 0.00 0.00 2.66
51 52 2.386661 TGAAGAGGGCGATGAAGTTC 57.613 50.000 0.00 0.00 0.00 3.01
52 53 1.281899 GAAGAGGGCGATGAAGTTCG 58.718 55.000 0.00 0.00 41.99 3.95
53 54 0.608640 AAGAGGGCGATGAAGTTCGT 59.391 50.000 0.00 0.00 41.16 3.85
54 55 0.108615 AGAGGGCGATGAAGTTCGTG 60.109 55.000 1.31 0.00 41.16 4.35
55 56 0.108804 GAGGGCGATGAAGTTCGTGA 60.109 55.000 1.31 0.00 41.16 4.35
56 57 0.537188 AGGGCGATGAAGTTCGTGAT 59.463 50.000 1.31 0.00 41.16 3.06
57 58 1.754803 AGGGCGATGAAGTTCGTGATA 59.245 47.619 1.31 0.00 41.16 2.15
58 59 2.128035 GGGCGATGAAGTTCGTGATAG 58.872 52.381 1.31 0.00 41.16 2.08
59 60 1.523095 GGCGATGAAGTTCGTGATAGC 59.477 52.381 1.31 0.53 41.16 2.97
60 61 1.188138 GCGATGAAGTTCGTGATAGCG 59.812 52.381 1.31 0.61 41.16 4.26
61 62 2.716398 CGATGAAGTTCGTGATAGCGA 58.284 47.619 1.31 0.00 39.28 4.93
62 63 3.105937 CGATGAAGTTCGTGATAGCGAA 58.894 45.455 1.31 0.00 46.78 4.70
76 77 4.796231 CGAAGCTCACCCCGGTCG 62.796 72.222 0.00 0.00 0.00 4.79
77 78 3.379445 GAAGCTCACCCCGGTCGA 61.379 66.667 0.00 0.00 0.00 4.20
78 79 3.644399 GAAGCTCACCCCGGTCGAC 62.644 68.421 7.13 7.13 0.00 4.20
85 86 4.133373 CCCCGGTCGACCCCTCTA 62.133 72.222 28.52 0.00 0.00 2.43
86 87 2.832201 CCCGGTCGACCCCTCTAC 60.832 72.222 28.52 2.14 0.00 2.59
87 88 3.207669 CCGGTCGACCCCTCTACG 61.208 72.222 28.52 14.46 0.00 3.51
88 89 2.437359 CGGTCGACCCCTCTACGT 60.437 66.667 28.52 0.00 0.00 3.57
89 90 2.042831 CGGTCGACCCCTCTACGTT 61.043 63.158 28.52 0.00 0.00 3.99
90 91 1.509923 GGTCGACCCCTCTACGTTG 59.490 63.158 24.75 0.00 0.00 4.10
91 92 1.246737 GGTCGACCCCTCTACGTTGT 61.247 60.000 24.75 0.00 0.00 3.32
92 93 0.600057 GTCGACCCCTCTACGTTGTT 59.400 55.000 3.51 0.00 0.00 2.83
93 94 1.000171 GTCGACCCCTCTACGTTGTTT 60.000 52.381 3.51 0.00 0.00 2.83
94 95 1.270550 TCGACCCCTCTACGTTGTTTC 59.729 52.381 0.00 0.00 0.00 2.78
95 96 1.670967 CGACCCCTCTACGTTGTTTCC 60.671 57.143 0.00 0.00 0.00 3.13
96 97 1.622312 GACCCCTCTACGTTGTTTCCT 59.378 52.381 0.00 0.00 0.00 3.36
97 98 2.038164 GACCCCTCTACGTTGTTTCCTT 59.962 50.000 0.00 0.00 0.00 3.36
98 99 2.440627 ACCCCTCTACGTTGTTTCCTTT 59.559 45.455 0.00 0.00 0.00 3.11
99 100 3.117776 ACCCCTCTACGTTGTTTCCTTTT 60.118 43.478 0.00 0.00 0.00 2.27
100 101 3.887110 CCCCTCTACGTTGTTTCCTTTTT 59.113 43.478 0.00 0.00 0.00 1.94
116 117 1.691196 TTTTTCACTCTGCCACCAGG 58.309 50.000 0.00 0.00 39.61 4.45
132 133 2.124403 GGCACTGCCTGCTATGCT 60.124 61.111 13.28 0.00 46.69 3.79
133 134 1.751927 GGCACTGCCTGCTATGCTT 60.752 57.895 13.28 0.00 46.69 3.91
134 135 1.318158 GGCACTGCCTGCTATGCTTT 61.318 55.000 13.28 0.00 46.69 3.51
135 136 0.179145 GCACTGCCTGCTATGCTTTG 60.179 55.000 9.87 0.00 43.33 2.77
136 137 1.171308 CACTGCCTGCTATGCTTTGT 58.829 50.000 0.00 0.00 0.00 2.83
137 138 1.131883 CACTGCCTGCTATGCTTTGTC 59.868 52.381 0.00 0.00 0.00 3.18
138 139 1.271543 ACTGCCTGCTATGCTTTGTCA 60.272 47.619 0.00 0.00 0.00 3.58
139 140 1.131883 CTGCCTGCTATGCTTTGTCAC 59.868 52.381 0.00 0.00 0.00 3.67
140 141 0.097674 GCCTGCTATGCTTTGTCACG 59.902 55.000 0.00 0.00 0.00 4.35
141 142 1.725641 CCTGCTATGCTTTGTCACGA 58.274 50.000 0.00 0.00 0.00 4.35
142 143 2.076100 CCTGCTATGCTTTGTCACGAA 58.924 47.619 0.00 0.00 0.00 3.85
143 144 2.094894 CCTGCTATGCTTTGTCACGAAG 59.905 50.000 0.00 0.00 0.00 3.79
148 149 3.736581 GCTTTGTCACGAAGCTCAC 57.263 52.632 21.03 0.00 44.63 3.51
149 150 0.235926 GCTTTGTCACGAAGCTCACC 59.764 55.000 21.03 0.00 44.63 4.02
150 151 1.871080 CTTTGTCACGAAGCTCACCT 58.129 50.000 0.00 0.00 0.00 4.00
151 152 2.866460 GCTTTGTCACGAAGCTCACCTA 60.866 50.000 21.03 0.00 44.63 3.08
152 153 2.724977 TTGTCACGAAGCTCACCTAG 57.275 50.000 0.00 0.00 0.00 3.02
153 154 0.888619 TGTCACGAAGCTCACCTAGG 59.111 55.000 7.41 7.41 0.00 3.02
154 155 0.458716 GTCACGAAGCTCACCTAGGC 60.459 60.000 9.30 0.00 0.00 3.93
155 156 1.153549 CACGAAGCTCACCTAGGCC 60.154 63.158 9.30 0.00 0.00 5.19
156 157 2.105128 CGAAGCTCACCTAGGCCG 59.895 66.667 9.30 0.00 0.00 6.13
157 158 2.415608 CGAAGCTCACCTAGGCCGA 61.416 63.158 9.30 4.88 0.00 5.54
158 159 1.142097 GAAGCTCACCTAGGCCGAC 59.858 63.158 9.30 0.00 0.00 4.79
159 160 2.299503 GAAGCTCACCTAGGCCGACC 62.300 65.000 9.30 0.00 0.00 4.79
161 162 2.787567 GCTCACCTAGGCCGACCTC 61.788 68.421 9.30 0.00 46.34 3.85
162 163 1.379977 CTCACCTAGGCCGACCTCA 60.380 63.158 9.30 0.00 46.34 3.86
163 164 0.970937 CTCACCTAGGCCGACCTCAA 60.971 60.000 9.30 0.00 46.34 3.02
164 165 0.970937 TCACCTAGGCCGACCTCAAG 60.971 60.000 9.30 0.00 46.34 3.02
165 166 1.686110 ACCTAGGCCGACCTCAAGG 60.686 63.158 9.30 5.11 46.34 3.61
183 184 3.753774 GTTGTCATCAACGTGCCAG 57.246 52.632 0.00 0.00 43.23 4.85
184 185 0.385974 GTTGTCATCAACGTGCCAGC 60.386 55.000 0.00 0.00 43.23 4.85
185 186 1.840630 TTGTCATCAACGTGCCAGCG 61.841 55.000 0.00 0.00 37.94 5.18
186 187 2.741985 TCATCAACGTGCCAGCGG 60.742 61.111 0.00 0.00 35.98 5.52
198 199 2.749044 CAGCGGCAGGAGCAACAT 60.749 61.111 1.45 0.00 44.61 2.71
199 200 2.437359 AGCGGCAGGAGCAACATC 60.437 61.111 1.45 0.00 44.61 3.06
200 201 2.437359 GCGGCAGGAGCAACATCT 60.437 61.111 0.00 0.00 44.61 2.90
201 202 1.153369 GCGGCAGGAGCAACATCTA 60.153 57.895 0.00 0.00 44.61 1.98
202 203 1.156645 GCGGCAGGAGCAACATCTAG 61.157 60.000 0.00 0.00 44.61 2.43
203 204 0.176680 CGGCAGGAGCAACATCTAGT 59.823 55.000 0.00 0.00 44.61 2.57
204 205 1.804372 CGGCAGGAGCAACATCTAGTC 60.804 57.143 0.00 0.00 44.61 2.59
205 206 1.474143 GGCAGGAGCAACATCTAGTCC 60.474 57.143 0.00 0.00 44.61 3.85
206 207 1.804372 GCAGGAGCAACATCTAGTCCG 60.804 57.143 0.00 0.00 41.58 4.79
207 208 1.115467 AGGAGCAACATCTAGTCCGG 58.885 55.000 0.00 0.00 32.14 5.14
208 209 0.530870 GGAGCAACATCTAGTCCGGC 60.531 60.000 0.00 0.00 0.00 6.13
209 210 0.530870 GAGCAACATCTAGTCCGGCC 60.531 60.000 0.00 0.00 0.00 6.13
210 211 0.978146 AGCAACATCTAGTCCGGCCT 60.978 55.000 0.00 0.00 0.00 5.19
211 212 0.750850 GCAACATCTAGTCCGGCCTA 59.249 55.000 0.00 0.00 0.00 3.93
212 213 1.269831 GCAACATCTAGTCCGGCCTAG 60.270 57.143 13.47 13.47 36.55 3.02
213 214 2.307768 CAACATCTAGTCCGGCCTAGA 58.692 52.381 23.54 23.54 45.53 2.43
214 215 1.984066 ACATCTAGTCCGGCCTAGAC 58.016 55.000 23.76 13.48 44.57 2.59
215 216 1.214673 ACATCTAGTCCGGCCTAGACA 59.785 52.381 23.76 3.79 44.57 3.41
216 217 1.609555 CATCTAGTCCGGCCTAGACAC 59.390 57.143 23.76 1.29 44.57 3.67
217 218 0.106819 TCTAGTCCGGCCTAGACACC 60.107 60.000 18.09 0.00 38.76 4.16
218 219 0.395311 CTAGTCCGGCCTAGACACCA 60.395 60.000 14.47 8.05 37.24 4.17
219 220 0.682209 TAGTCCGGCCTAGACACCAC 60.682 60.000 21.04 0.00 36.68 4.16
220 221 1.982938 GTCCGGCCTAGACACCACT 60.983 63.158 15.81 0.00 34.27 4.00
221 222 1.681327 TCCGGCCTAGACACCACTC 60.681 63.158 0.00 0.00 0.00 3.51
222 223 1.682684 CCGGCCTAGACACCACTCT 60.683 63.158 0.00 0.00 0.00 3.24
223 224 1.513158 CGGCCTAGACACCACTCTG 59.487 63.158 0.00 0.00 0.00 3.35
224 225 1.901085 GGCCTAGACACCACTCTGG 59.099 63.158 0.00 0.00 45.02 3.86
225 226 1.219393 GCCTAGACACCACTCTGGC 59.781 63.158 0.00 0.00 42.67 4.85
226 227 1.901085 CCTAGACACCACTCTGGCC 59.099 63.158 0.00 0.00 42.67 5.36
227 228 0.904865 CCTAGACACCACTCTGGCCA 60.905 60.000 4.71 4.71 42.67 5.36
228 229 1.198713 CTAGACACCACTCTGGCCAT 58.801 55.000 5.51 0.00 42.67 4.40
229 230 1.137872 CTAGACACCACTCTGGCCATC 59.862 57.143 5.51 0.00 42.67 3.51
230 231 1.448540 GACACCACTCTGGCCATCG 60.449 63.158 5.51 2.22 42.67 3.84
231 232 2.172483 GACACCACTCTGGCCATCGT 62.172 60.000 5.51 3.01 42.67 3.73
232 233 1.448540 CACCACTCTGGCCATCGTC 60.449 63.158 5.51 0.00 42.67 4.20
233 234 2.202797 CCACTCTGGCCATCGTCG 60.203 66.667 5.51 0.00 0.00 5.12
234 235 2.887568 CACTCTGGCCATCGTCGC 60.888 66.667 5.51 0.00 0.00 5.19
263 264 2.051345 CCACCAAAGTTCGCACGC 60.051 61.111 0.00 0.00 0.00 5.34
292 293 1.224315 CCTCATGTCCGATGGCCAA 59.776 57.895 10.96 0.00 0.00 4.52
303 304 0.605319 GATGGCCAACAGAACACCGA 60.605 55.000 10.96 0.00 0.00 4.69
319 320 1.021390 CCGACGATTCCAAGCAAGCT 61.021 55.000 0.00 0.00 0.00 3.74
364 365 2.041265 ATCGCCAGGAAGTCCCCT 59.959 61.111 0.00 0.00 36.90 4.79
387 388 1.598701 GGGATGTCCAGCTTTGTGCC 61.599 60.000 0.86 0.00 44.23 5.01
420 421 4.194720 AGCGCGCCCTTCTCGTAG 62.195 66.667 30.33 0.00 0.00 3.51
430 431 2.381665 CTTCTCGTAGCTCCTCGGCG 62.382 65.000 0.00 0.00 37.29 6.46
450 451 4.293648 CTCGTGACGGTGGTGGCA 62.294 66.667 4.70 0.00 0.00 4.92
451 452 3.589654 CTCGTGACGGTGGTGGCAT 62.590 63.158 4.70 0.00 0.00 4.40
452 453 2.220615 CTCGTGACGGTGGTGGCATA 62.221 60.000 4.70 0.00 0.00 3.14
453 454 1.809619 CGTGACGGTGGTGGCATAG 60.810 63.158 0.00 0.00 0.00 2.23
454 455 1.449601 GTGACGGTGGTGGCATAGG 60.450 63.158 0.00 0.00 0.00 2.57
455 456 1.610967 TGACGGTGGTGGCATAGGA 60.611 57.895 0.00 0.00 0.00 2.94
456 457 1.195442 TGACGGTGGTGGCATAGGAA 61.195 55.000 0.00 0.00 0.00 3.36
457 458 0.743345 GACGGTGGTGGCATAGGAAC 60.743 60.000 0.00 0.00 0.00 3.62
458 459 1.198759 ACGGTGGTGGCATAGGAACT 61.199 55.000 0.00 0.00 46.37 3.01
459 460 0.744414 CGGTGGTGGCATAGGAACTG 60.744 60.000 0.00 0.00 41.52 3.16
460 461 1.032114 GGTGGTGGCATAGGAACTGC 61.032 60.000 0.00 0.00 41.52 4.40
461 462 0.322456 GTGGTGGCATAGGAACTGCA 60.322 55.000 0.00 0.00 41.52 4.41
462 463 0.035152 TGGTGGCATAGGAACTGCAG 60.035 55.000 13.48 13.48 41.52 4.41
463 464 0.253044 GGTGGCATAGGAACTGCAGA 59.747 55.000 23.35 0.00 41.52 4.26
464 465 1.133976 GGTGGCATAGGAACTGCAGAT 60.134 52.381 23.35 9.01 41.52 2.90
465 466 1.945394 GTGGCATAGGAACTGCAGATG 59.055 52.381 23.35 14.19 41.52 2.90
466 467 1.839354 TGGCATAGGAACTGCAGATGA 59.161 47.619 23.35 0.56 41.52 2.92
467 468 2.216898 GGCATAGGAACTGCAGATGAC 58.783 52.381 23.35 11.81 41.52 3.06
468 469 1.863454 GCATAGGAACTGCAGATGACG 59.137 52.381 23.35 3.39 41.52 4.35
469 470 1.863454 CATAGGAACTGCAGATGACGC 59.137 52.381 23.35 0.00 41.52 5.19
470 471 1.186200 TAGGAACTGCAGATGACGCT 58.814 50.000 23.35 9.65 41.52 5.07
471 472 0.390866 AGGAACTGCAGATGACGCTG 60.391 55.000 23.35 0.00 37.18 5.18
472 473 0.390340 GGAACTGCAGATGACGCTGA 60.390 55.000 23.35 0.00 38.14 4.26
473 474 1.649664 GAACTGCAGATGACGCTGAT 58.350 50.000 23.35 0.00 38.14 2.90
474 475 1.326852 GAACTGCAGATGACGCTGATG 59.673 52.381 23.35 0.00 38.14 3.07
475 476 0.248565 ACTGCAGATGACGCTGATGT 59.751 50.000 23.35 0.00 38.14 3.06
476 477 0.928922 CTGCAGATGACGCTGATGTC 59.071 55.000 8.42 0.00 38.14 3.06
477 478 0.533951 TGCAGATGACGCTGATGTCT 59.466 50.000 0.00 0.00 39.64 3.41
478 479 1.750778 TGCAGATGACGCTGATGTCTA 59.249 47.619 0.00 0.00 39.64 2.59
479 480 2.166254 TGCAGATGACGCTGATGTCTAA 59.834 45.455 0.00 0.00 39.64 2.10
480 481 2.793790 GCAGATGACGCTGATGTCTAAG 59.206 50.000 0.00 0.00 39.64 2.18
481 482 3.489908 GCAGATGACGCTGATGTCTAAGA 60.490 47.826 0.00 0.00 39.64 2.10
482 483 4.795635 GCAGATGACGCTGATGTCTAAGAT 60.796 45.833 0.00 0.00 39.64 2.40
483 484 4.680567 CAGATGACGCTGATGTCTAAGATG 59.319 45.833 0.00 0.00 39.64 2.90
484 485 3.443099 TGACGCTGATGTCTAAGATGG 57.557 47.619 2.85 0.00 39.64 3.51
485 486 3.023832 TGACGCTGATGTCTAAGATGGA 58.976 45.455 2.85 0.00 39.64 3.41
486 487 3.638627 TGACGCTGATGTCTAAGATGGAT 59.361 43.478 2.85 0.00 39.64 3.41
487 488 3.986572 GACGCTGATGTCTAAGATGGATG 59.013 47.826 0.00 0.00 35.95 3.51
488 489 3.638627 ACGCTGATGTCTAAGATGGATGA 59.361 43.478 0.00 0.00 0.00 2.92
489 490 3.986572 CGCTGATGTCTAAGATGGATGAC 59.013 47.826 0.00 0.00 0.00 3.06
490 491 4.314121 GCTGATGTCTAAGATGGATGACC 58.686 47.826 0.00 0.00 0.00 4.02
491 492 4.802248 GCTGATGTCTAAGATGGATGACCC 60.802 50.000 0.00 0.00 34.81 4.46
492 493 3.648067 TGATGTCTAAGATGGATGACCCC 59.352 47.826 0.00 0.00 34.81 4.95
493 494 2.408565 TGTCTAAGATGGATGACCCCC 58.591 52.381 0.00 0.00 34.81 5.40
507 508 4.455366 CCCCCAGAACCTAGACGT 57.545 61.111 0.00 0.00 0.00 4.34
508 509 2.200052 CCCCCAGAACCTAGACGTC 58.800 63.158 7.70 7.70 0.00 4.34
509 510 0.613853 CCCCCAGAACCTAGACGTCA 60.614 60.000 19.50 2.84 0.00 4.35
510 511 1.486211 CCCCAGAACCTAGACGTCAT 58.514 55.000 19.50 5.54 0.00 3.06
511 512 1.137086 CCCCAGAACCTAGACGTCATG 59.863 57.143 19.50 9.53 0.00 3.07
512 513 2.100197 CCCAGAACCTAGACGTCATGA 58.900 52.381 19.50 1.21 0.00 3.07
513 514 2.695666 CCCAGAACCTAGACGTCATGAT 59.304 50.000 19.50 0.00 0.00 2.45
514 515 3.133003 CCCAGAACCTAGACGTCATGATT 59.867 47.826 19.50 6.59 0.00 2.57
515 516 4.115516 CCAGAACCTAGACGTCATGATTG 58.884 47.826 19.50 6.89 0.00 2.67
520 854 3.055819 ACCTAGACGTCATGATTGTGCTT 60.056 43.478 19.50 0.00 0.00 3.91
527 861 2.421424 GTCATGATTGTGCTTGTCCTCC 59.579 50.000 0.00 0.00 0.00 4.30
555 889 3.964875 GCTTGCGTGTGGTGTGGG 61.965 66.667 0.00 0.00 0.00 4.61
574 908 6.143278 GTGTGGGCGTTTTTAATGTTTAGAAG 59.857 38.462 0.00 0.00 0.00 2.85
591 925 9.635404 TGTTTAGAAGGGTATAAATGGTAATGG 57.365 33.333 0.00 0.00 0.00 3.16
607 941 0.623723 ATGGTGGGTCGGCTAAATGT 59.376 50.000 0.00 0.00 0.00 2.71
610 944 1.612199 GGTGGGTCGGCTAAATGTGAA 60.612 52.381 0.00 0.00 0.00 3.18
611 945 1.467342 GTGGGTCGGCTAAATGTGAAC 59.533 52.381 0.00 0.00 0.00 3.18
612 946 1.092348 GGGTCGGCTAAATGTGAACC 58.908 55.000 0.00 0.00 0.00 3.62
613 947 0.725117 GGTCGGCTAAATGTGAACCG 59.275 55.000 0.00 0.00 45.15 4.44
614 948 0.725117 GTCGGCTAAATGTGAACCGG 59.275 55.000 0.00 0.00 43.96 5.28
615 949 0.609151 TCGGCTAAATGTGAACCGGA 59.391 50.000 9.46 0.00 43.96 5.14
616 950 1.208535 TCGGCTAAATGTGAACCGGAT 59.791 47.619 9.46 0.00 43.96 4.18
617 951 2.014128 CGGCTAAATGTGAACCGGATT 58.986 47.619 9.46 0.00 40.18 3.01
618 952 3.118702 TCGGCTAAATGTGAACCGGATTA 60.119 43.478 9.46 0.00 43.96 1.75
619 953 3.623960 CGGCTAAATGTGAACCGGATTAA 59.376 43.478 9.46 0.00 40.18 1.40
620 954 4.274950 CGGCTAAATGTGAACCGGATTAAT 59.725 41.667 9.46 0.00 40.18 1.40
622 956 6.148811 CGGCTAAATGTGAACCGGATTAATAT 59.851 38.462 9.46 0.00 40.18 1.28
623 957 7.332430 CGGCTAAATGTGAACCGGATTAATATA 59.668 37.037 9.46 0.00 40.18 0.86
669 1003 7.832187 CCACTAAAATAGTTTAAGTGGGATGGA 59.168 37.037 22.77 0.00 40.42 3.41
696 1030 7.466804 TGATTAGTCCCACTTAATTCCACTTT 58.533 34.615 0.00 0.00 0.00 2.66
697 1031 7.610305 TGATTAGTCCCACTTAATTCCACTTTC 59.390 37.037 0.00 0.00 0.00 2.62
699 1033 5.070685 AGTCCCACTTAATTCCACTTTCAC 58.929 41.667 0.00 0.00 0.00 3.18
700 1034 5.070685 GTCCCACTTAATTCCACTTTCACT 58.929 41.667 0.00 0.00 0.00 3.41
701 1035 5.181433 GTCCCACTTAATTCCACTTTCACTC 59.819 44.000 0.00 0.00 0.00 3.51
703 1037 4.154195 CCACTTAATTCCACTTTCACTCGG 59.846 45.833 0.00 0.00 0.00 4.63
704 1038 4.994852 CACTTAATTCCACTTTCACTCGGA 59.005 41.667 0.00 0.00 0.00 4.55
705 1039 5.643777 CACTTAATTCCACTTTCACTCGGAT 59.356 40.000 0.00 0.00 0.00 4.18
706 1040 5.643777 ACTTAATTCCACTTTCACTCGGATG 59.356 40.000 0.00 0.00 0.00 3.51
708 1042 2.743636 TCCACTTTCACTCGGATGAC 57.256 50.000 0.00 0.00 0.00 3.06
729 1067 6.430864 TGACCTTGCATATAAAAATGGAGGA 58.569 36.000 0.00 0.00 0.00 3.71
744 1082 9.454859 AAAAATGGAGGAAGTATGAGACTAAAG 57.545 33.333 0.00 0.00 37.44 1.85
789 1130 5.569413 CGGGAGATGCTGTAAATAAAACAC 58.431 41.667 0.00 0.00 0.00 3.32
794 1135 8.276325 GGAGATGCTGTAAATAAAACACTATCG 58.724 37.037 0.00 0.00 0.00 2.92
795 1136 8.718102 AGATGCTGTAAATAAAACACTATCGT 57.282 30.769 0.00 0.00 0.00 3.73
877 1221 2.124693 GCTAGCTCGTCCTGAGGCT 61.125 63.158 7.70 0.00 45.38 4.58
1254 1598 2.124570 ATCACATGTGGGCTCGGC 60.125 61.111 25.16 0.00 0.00 5.54
1299 1643 3.187432 TGCTGATTGATTTGTACGCGAAA 59.813 39.130 15.93 2.84 0.00 3.46
1302 1646 5.219841 GCTGATTGATTTGTACGCGAAAAAG 60.220 40.000 15.93 4.98 0.00 2.27
1390 1734 2.230992 GCAATGTTGTCAGGGTATGCAA 59.769 45.455 0.00 0.00 33.00 4.08
1416 1760 2.037772 TGGTCTTGGAGAAGAAGCTGTC 59.962 50.000 0.00 0.00 40.00 3.51
1527 1871 0.817634 TTGAGCAAGGACGGTTGGTG 60.818 55.000 4.17 0.00 38.25 4.17
1566 1910 1.002468 CAAGGGTTGTGCTCTGAAACG 60.002 52.381 0.00 0.00 0.00 3.60
1581 1925 0.757188 AAACGGTTGTGGGGAATGCA 60.757 50.000 0.00 0.00 0.00 3.96
1617 1961 4.642429 ACTTGCGGTTCAGATCTTTTAGT 58.358 39.130 0.00 0.00 0.00 2.24
1731 2075 6.372659 GTGAGAGTGCTTTGGAGATATTTGAA 59.627 38.462 0.00 0.00 0.00 2.69
1787 2131 4.286032 TGTAACCATTGCTAGTCTCCTTGT 59.714 41.667 0.00 0.00 0.00 3.16
1802 2146 2.233922 TCCTTGTAGCTTGTGCCTCTAC 59.766 50.000 0.00 0.00 40.80 2.59
1806 2150 1.550976 GTAGCTTGTGCCTCTACTGGT 59.449 52.381 0.00 0.00 40.80 4.00
1840 2184 2.692041 GGCAAGCAGCTCCATTCTTATT 59.308 45.455 0.00 0.00 44.79 1.40
1863 2207 2.715046 CTAAAAGCAGGCATGTCTCCA 58.285 47.619 0.00 0.00 0.00 3.86
1923 2267 5.951148 TGTGAAATGTGGTGATATTGTGGAT 59.049 36.000 0.00 0.00 0.00 3.41
1926 2270 2.287769 TGTGGTGATATTGTGGATGCG 58.712 47.619 0.00 0.00 0.00 4.73
1930 2274 2.212652 GTGATATTGTGGATGCGCTCA 58.787 47.619 9.73 1.22 0.00 4.26
1999 2343 0.103572 GCTTGTTGCATATGGGCAGG 59.896 55.000 4.56 0.00 45.88 4.85
2019 2363 5.586243 GCAGGTTAGTGATCTAGCAAAATCA 59.414 40.000 0.00 0.00 0.00 2.57
2231 2575 1.678728 CGGGTGGCTTGATAAAGCTCA 60.679 52.381 14.65 8.14 44.86 4.26
2307 2651 1.328680 GCTGGATACGTGCAACATGAG 59.671 52.381 0.00 0.00 42.51 2.90
2857 3201 4.387862 CCAAGATGCAGTTCTTTGAAATGC 59.612 41.667 20.89 20.89 33.69 3.56
3045 3389 3.174779 AGAGGAGGGTCTTGGTTACTTC 58.825 50.000 0.00 0.00 0.00 3.01
3390 3734 0.321996 GAGTCAGAAAAGAGCCCGGT 59.678 55.000 0.00 0.00 0.00 5.28
3442 3786 5.534207 TCATGCTTTCTTTGTTGGTGATT 57.466 34.783 0.00 0.00 0.00 2.57
3459 3803 1.840224 ATTGGTTGCACCCATTGGCC 61.840 55.000 2.83 0.00 37.50 5.36
3495 3839 7.293073 ACAAATATTTGGCTGACCTAGATGAT 58.707 34.615 27.43 2.70 42.34 2.45
3518 3862 8.783903 TGATAGGTTAACCAAAATAGGGTACAT 58.216 33.333 26.26 3.09 37.77 2.29
3712 4056 6.419484 TGAAGTTTACCTCTGAAGTCATGA 57.581 37.500 0.00 0.00 0.00 3.07
3741 4085 7.712639 AGAGAAATTGTATTGCGAGATGTGTAT 59.287 33.333 0.00 0.00 0.00 2.29
3834 4178 2.050144 TGAAGTGCTCCTCCTGAAGTT 58.950 47.619 0.00 0.00 0.00 2.66
3919 4265 1.068895 CTTTGTTGGCCTGTCATGCAA 59.931 47.619 3.32 0.00 0.00 4.08
3942 4288 6.410942 AATATCTAAATTTGGAAGCCAGCC 57.589 37.500 8.42 0.00 33.81 4.85
4071 4418 4.974645 TGCCGTTTCAGGGATCTATAAT 57.025 40.909 0.00 0.00 0.00 1.28
4150 4498 7.610305 TCATATTTCAACCCTGAACTCTAAACC 59.390 37.037 0.00 0.00 41.34 3.27
4153 4501 5.382664 TCAACCCTGAACTCTAAACCTTT 57.617 39.130 0.00 0.00 0.00 3.11
4174 4522 1.760480 GGCCCCACTTGGTTTGTGT 60.760 57.895 0.00 0.00 33.92 3.72
4176 4524 1.441311 CCCCACTTGGTTTGTGTGC 59.559 57.895 0.00 0.00 33.92 4.57
4203 4552 0.323542 CGGTACAGGTCCCTCTCACT 60.324 60.000 0.00 0.00 0.00 3.41
4212 4561 3.395941 AGGTCCCTCTCACTGTTGATTTT 59.604 43.478 0.00 0.00 0.00 1.82
4219 4568 3.138283 TCTCACTGTTGATTTTCCAGGGT 59.862 43.478 0.00 0.00 31.50 4.34
4226 4575 7.122650 CACTGTTGATTTTCCAGGGTAATATGT 59.877 37.037 0.00 0.00 0.00 2.29
4270 4619 1.079490 ACTGATGGGTCCTCTCCTTGA 59.921 52.381 0.00 0.00 0.00 3.02
4271 4620 1.761784 CTGATGGGTCCTCTCCTTGAG 59.238 57.143 0.00 0.00 42.30 3.02
4306 4993 2.507102 CGACGACGCTGCCTTCAT 60.507 61.111 0.00 0.00 0.00 2.57
4328 5015 2.678934 TCGTCCTCCCCAAGTCCG 60.679 66.667 0.00 0.00 0.00 4.79
4339 5026 0.324943 CCAAGTCCGTCAATGTCCCT 59.675 55.000 0.00 0.00 0.00 4.20
4343 5030 0.320374 GTCCGTCAATGTCCCTGTCA 59.680 55.000 0.00 0.00 0.00 3.58
4357 5044 2.127609 GTCACTGCGCTCGTTTGC 60.128 61.111 9.73 0.00 0.00 3.68
4360 5047 4.626081 ACTGCGCTCGTTTGCCCT 62.626 61.111 9.73 0.00 0.00 5.19
4407 5095 1.340248 CACGATGACGCCCCTATTAGT 59.660 52.381 0.00 0.00 43.96 2.24
4484 5172 1.202651 AGTAGCAGCTGTTTCCGTTGT 60.203 47.619 16.64 0.00 0.00 3.32
4505 5193 1.968540 GACTCAGCCCAGCCACAAC 60.969 63.158 0.00 0.00 0.00 3.32
4506 5194 2.113774 CTCAGCCCAGCCACAACA 59.886 61.111 0.00 0.00 0.00 3.33
4515 5203 1.603678 CCAGCCACAACAAATGCAGAC 60.604 52.381 0.00 0.00 0.00 3.51
4539 5227 0.335019 TGCAGTAGGAGGTAGCCAGA 59.665 55.000 0.00 0.00 0.00 3.86
4540 5228 0.747852 GCAGTAGGAGGTAGCCAGAC 59.252 60.000 0.00 0.00 0.00 3.51
4566 5254 4.369182 GTTGTACATCCGATAGAAGGTGG 58.631 47.826 0.00 0.00 39.76 4.61
4575 5263 2.158900 CGATAGAAGGTGGCCAACTGAT 60.159 50.000 27.69 18.39 39.76 2.90
4627 5316 7.757097 TGATAATCTTCGTAGCTGAGAAAAC 57.243 36.000 0.00 0.00 0.00 2.43
4637 5326 5.234329 CGTAGCTGAGAAAACTCTTTCAACA 59.766 40.000 0.00 0.59 42.99 3.33
4666 5355 2.680370 GGTTTCTCCCGCCCCATCT 61.680 63.158 0.00 0.00 0.00 2.90
4674 5363 2.194056 CGCCCCATCTTGCCATCT 59.806 61.111 0.00 0.00 0.00 2.90
4683 5372 1.452651 CTTGCCATCTCCACCGCAT 60.453 57.895 0.00 0.00 0.00 4.73
4684 5373 1.442526 CTTGCCATCTCCACCGCATC 61.443 60.000 0.00 0.00 0.00 3.91
4685 5374 2.592861 GCCATCTCCACCGCATCC 60.593 66.667 0.00 0.00 0.00 3.51
4686 5375 2.111878 CCATCTCCACCGCATCCC 59.888 66.667 0.00 0.00 0.00 3.85
4687 5376 2.111878 CATCTCCACCGCATCCCC 59.888 66.667 0.00 0.00 0.00 4.81
4688 5377 3.550431 ATCTCCACCGCATCCCCG 61.550 66.667 0.00 0.00 0.00 5.73
4706 5395 4.193334 CCGCATCGACTCCGCTCA 62.193 66.667 0.00 0.00 35.37 4.26
4734 5423 2.748605 GACCCAGACGAGCTTCATATG 58.251 52.381 0.00 0.00 0.00 1.78
4773 5462 3.724494 GGCAGCCGAATGAGCTAC 58.276 61.111 0.00 0.00 38.95 3.58
4788 5477 1.153127 CTACTCCGACGAGCCTCCT 60.153 63.158 0.00 0.00 40.03 3.69
4814 5503 2.810650 CACTATACGCCAGACCAGTTC 58.189 52.381 0.00 0.00 0.00 3.01
4822 5511 1.752198 CAGACCAGTTCGTTCCCCA 59.248 57.895 0.00 0.00 0.00 4.96
4875 5564 0.109781 CAAACACTCGCCGAATTGGG 60.110 55.000 1.39 1.39 38.63 4.12
4892 5581 4.847444 GCCTCAAGCCTCCTCGCC 62.847 72.222 0.00 0.00 34.35 5.54
4958 5648 2.267351 TGGCAACTGGCATCGTTGG 61.267 57.895 17.91 4.09 46.12 3.77
4959 5649 2.974692 TGGCAACTGGCATCGTTGGT 62.975 55.000 17.91 0.00 46.12 3.67
5008 5698 0.761323 TCAGGTGAGTTCCCAACGGA 60.761 55.000 0.00 0.00 35.88 4.69
5022 5712 2.882137 CCAACGGAGCCTTTGTTCTTAA 59.118 45.455 5.22 0.00 0.00 1.85
5040 5730 5.547465 TCTTAACTCGCCATTTGAAGAAGA 58.453 37.500 0.00 0.00 0.00 2.87
5070 5761 5.405935 AGCTAATTTTCCATTTGACCACC 57.594 39.130 0.00 0.00 0.00 4.61
5099 5790 6.201234 TCAATTTTCTGTGTGAATTGTGCATG 59.799 34.615 0.00 0.00 40.13 4.06
5118 5809 7.589587 TGTGCATGTCTTGTTTAAAATACGAAG 59.410 33.333 0.00 0.00 0.00 3.79
5119 5810 6.580791 TGCATGTCTTGTTTAAAATACGAAGC 59.419 34.615 0.00 0.00 0.00 3.86
5120 5811 6.580791 GCATGTCTTGTTTAAAATACGAAGCA 59.419 34.615 0.00 0.00 0.00 3.91
5121 5812 7.273381 GCATGTCTTGTTTAAAATACGAAGCAT 59.727 33.333 0.00 0.00 0.00 3.79
5122 5813 8.577939 CATGTCTTGTTTAAAATACGAAGCATG 58.422 33.333 0.00 0.00 0.00 4.06
5123 5814 6.580791 TGTCTTGTTTAAAATACGAAGCATGC 59.419 34.615 10.51 10.51 0.00 4.06
5124 5815 6.801862 GTCTTGTTTAAAATACGAAGCATGCT 59.198 34.615 16.30 16.30 0.00 3.79
5125 5816 6.801377 TCTTGTTTAAAATACGAAGCATGCTG 59.199 34.615 23.48 12.58 0.00 4.41
5126 5817 4.856487 TGTTTAAAATACGAAGCATGCTGC 59.144 37.500 23.48 19.86 45.46 5.25
5136 5827 3.814049 GCATGCTGCTTGTCGATAC 57.186 52.632 11.37 0.00 40.96 2.24
5137 5828 1.293924 GCATGCTGCTTGTCGATACT 58.706 50.000 11.37 0.00 40.96 2.12
5138 5829 2.473816 GCATGCTGCTTGTCGATACTA 58.526 47.619 11.37 0.00 40.96 1.82
5139 5830 2.866156 GCATGCTGCTTGTCGATACTAA 59.134 45.455 11.37 0.00 40.96 2.24
5140 5831 3.309682 GCATGCTGCTTGTCGATACTAAA 59.690 43.478 11.37 0.00 40.96 1.85
5141 5832 4.201812 GCATGCTGCTTGTCGATACTAAAA 60.202 41.667 11.37 0.00 40.96 1.52
5142 5833 4.921470 TGCTGCTTGTCGATACTAAAAC 57.079 40.909 0.00 0.00 0.00 2.43
5143 5834 4.311606 TGCTGCTTGTCGATACTAAAACA 58.688 39.130 0.00 0.00 0.00 2.83
5144 5835 4.752604 TGCTGCTTGTCGATACTAAAACAA 59.247 37.500 0.00 0.00 0.00 2.83
5145 5836 5.237561 TGCTGCTTGTCGATACTAAAACAAA 59.762 36.000 0.00 0.00 31.75 2.83
5146 5837 5.790495 GCTGCTTGTCGATACTAAAACAAAG 59.210 40.000 0.00 0.00 31.75 2.77
5218 5909 2.159324 GCTTAAATCTGGAGCTGGCAAC 60.159 50.000 0.00 0.00 33.72 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.047718 CTTGTCGCCCTGCATGCTG 62.048 63.158 20.33 18.55 0.00 4.41
4 5 2.749044 CTTGTCGCCCTGCATGCT 60.749 61.111 20.33 0.00 0.00 3.79
5 6 4.487412 GCTTGTCGCCCTGCATGC 62.487 66.667 11.82 11.82 0.00 4.06
6 7 2.749044 AGCTTGTCGCCCTGCATG 60.749 61.111 0.00 0.00 40.39 4.06
7 8 2.749044 CAGCTTGTCGCCCTGCAT 60.749 61.111 0.00 0.00 40.39 3.96
10 11 3.429141 CTGCAGCTTGTCGCCCTG 61.429 66.667 0.00 0.00 40.39 4.45
11 12 3.602513 CTCTGCAGCTTGTCGCCCT 62.603 63.158 9.47 0.00 40.39 5.19
12 13 3.123620 CTCTGCAGCTTGTCGCCC 61.124 66.667 9.47 0.00 40.39 6.13
13 14 3.797546 GCTCTGCAGCTTGTCGCC 61.798 66.667 9.47 0.00 43.09 5.54
15 16 1.017701 TCATGCTCTGCAGCTTGTCG 61.018 55.000 9.47 0.00 46.35 4.35
16 17 1.130749 CTTCATGCTCTGCAGCTTGTC 59.869 52.381 9.47 0.00 46.35 3.18
17 18 1.166129 CTTCATGCTCTGCAGCTTGT 58.834 50.000 9.47 0.00 46.35 3.16
21 22 1.096386 CCCTCTTCATGCTCTGCAGC 61.096 60.000 9.47 0.00 43.65 5.25
22 23 1.096386 GCCCTCTTCATGCTCTGCAG 61.096 60.000 7.63 7.63 43.65 4.41
23 24 1.077930 GCCCTCTTCATGCTCTGCA 60.078 57.895 0.00 0.00 44.86 4.41
24 25 2.178890 CGCCCTCTTCATGCTCTGC 61.179 63.158 0.00 0.00 0.00 4.26
25 26 0.106335 ATCGCCCTCTTCATGCTCTG 59.894 55.000 0.00 0.00 0.00 3.35
26 27 0.106335 CATCGCCCTCTTCATGCTCT 59.894 55.000 0.00 0.00 0.00 4.09
27 28 0.105593 TCATCGCCCTCTTCATGCTC 59.894 55.000 0.00 0.00 0.00 4.26
28 29 0.543277 TTCATCGCCCTCTTCATGCT 59.457 50.000 0.00 0.00 0.00 3.79
29 30 0.942962 CTTCATCGCCCTCTTCATGC 59.057 55.000 0.00 0.00 0.00 4.06
30 31 2.322355 ACTTCATCGCCCTCTTCATG 57.678 50.000 0.00 0.00 0.00 3.07
31 32 2.739932 CGAACTTCATCGCCCTCTTCAT 60.740 50.000 0.00 0.00 35.85 2.57
32 33 1.404181 CGAACTTCATCGCCCTCTTCA 60.404 52.381 0.00 0.00 35.85 3.02
33 34 1.281899 CGAACTTCATCGCCCTCTTC 58.718 55.000 0.00 0.00 35.85 2.87
34 35 0.608640 ACGAACTTCATCGCCCTCTT 59.391 50.000 0.00 0.00 46.51 2.85
35 36 0.108615 CACGAACTTCATCGCCCTCT 60.109 55.000 0.00 0.00 46.51 3.69
36 37 0.108804 TCACGAACTTCATCGCCCTC 60.109 55.000 0.00 0.00 46.51 4.30
37 38 0.537188 ATCACGAACTTCATCGCCCT 59.463 50.000 0.00 0.00 46.51 5.19
38 39 2.128035 CTATCACGAACTTCATCGCCC 58.872 52.381 0.00 0.00 46.51 6.13
39 40 1.523095 GCTATCACGAACTTCATCGCC 59.477 52.381 0.00 0.00 46.51 5.54
40 41 1.188138 CGCTATCACGAACTTCATCGC 59.812 52.381 0.00 0.00 46.51 4.58
41 42 3.105937 TTCGCTATCACGAACTTCATCG 58.894 45.455 0.00 0.00 46.39 3.84
42 43 3.060873 GCTTCGCTATCACGAACTTCATC 60.061 47.826 0.00 0.00 46.39 2.92
43 44 2.860735 GCTTCGCTATCACGAACTTCAT 59.139 45.455 0.00 0.00 46.39 2.57
44 45 2.094700 AGCTTCGCTATCACGAACTTCA 60.095 45.455 0.00 0.00 46.39 3.02
45 46 2.531206 AGCTTCGCTATCACGAACTTC 58.469 47.619 0.00 0.00 46.39 3.01
46 47 2.094700 TGAGCTTCGCTATCACGAACTT 60.095 45.455 0.00 0.00 46.39 2.66
47 48 1.472878 TGAGCTTCGCTATCACGAACT 59.527 47.619 0.00 0.00 46.39 3.01
48 49 1.584308 GTGAGCTTCGCTATCACGAAC 59.416 52.381 0.00 0.00 46.39 3.95
50 51 0.100682 GGTGAGCTTCGCTATCACGA 59.899 55.000 0.00 0.00 39.88 4.35
51 52 0.872021 GGGTGAGCTTCGCTATCACG 60.872 60.000 0.00 0.00 39.88 4.35
52 53 0.530870 GGGGTGAGCTTCGCTATCAC 60.531 60.000 0.00 0.00 39.88 3.06
53 54 1.823295 GGGGTGAGCTTCGCTATCA 59.177 57.895 0.00 0.00 39.88 2.15
54 55 1.300233 CGGGGTGAGCTTCGCTATC 60.300 63.158 0.00 0.00 39.88 2.08
55 56 2.797278 CCGGGGTGAGCTTCGCTAT 61.797 63.158 0.00 0.00 39.88 2.97
56 57 3.458163 CCGGGGTGAGCTTCGCTA 61.458 66.667 0.00 0.00 39.88 4.26
59 60 4.796231 CGACCGGGGTGAGCTTCG 62.796 72.222 6.32 0.00 0.00 3.79
60 61 3.379445 TCGACCGGGGTGAGCTTC 61.379 66.667 6.32 0.00 0.00 3.86
61 62 3.692406 GTCGACCGGGGTGAGCTT 61.692 66.667 6.32 0.00 0.00 3.74
68 69 4.133373 TAGAGGGGTCGACCGGGG 62.133 72.222 27.68 0.00 41.60 5.73
69 70 2.832201 GTAGAGGGGTCGACCGGG 60.832 72.222 27.68 0.00 41.60 5.73
70 71 3.207669 CGTAGAGGGGTCGACCGG 61.208 72.222 27.68 0.00 41.60 5.28
71 72 2.042831 AACGTAGAGGGGTCGACCG 61.043 63.158 27.68 16.50 41.60 4.79
72 73 1.246737 ACAACGTAGAGGGGTCGACC 61.247 60.000 27.04 27.04 39.11 4.79
73 74 0.600057 AACAACGTAGAGGGGTCGAC 59.400 55.000 7.13 7.13 0.00 4.20
74 75 1.270550 GAAACAACGTAGAGGGGTCGA 59.729 52.381 0.00 0.00 0.00 4.20
75 76 1.670967 GGAAACAACGTAGAGGGGTCG 60.671 57.143 0.00 0.00 0.00 4.79
76 77 1.622312 AGGAAACAACGTAGAGGGGTC 59.378 52.381 0.00 0.00 0.00 4.46
77 78 1.725803 AGGAAACAACGTAGAGGGGT 58.274 50.000 0.00 0.00 0.00 4.95
78 79 2.853235 AAGGAAACAACGTAGAGGGG 57.147 50.000 0.00 0.00 0.00 4.79
97 98 1.691196 CCTGGTGGCAGAGTGAAAAA 58.309 50.000 0.00 0.00 0.00 1.94
98 99 3.419793 CCTGGTGGCAGAGTGAAAA 57.580 52.632 0.00 0.00 0.00 2.29
117 118 1.131883 GACAAAGCATAGCAGGCAGTG 59.868 52.381 0.00 0.00 0.00 3.66
118 119 1.271543 TGACAAAGCATAGCAGGCAGT 60.272 47.619 0.00 0.00 0.00 4.40
119 120 1.131883 GTGACAAAGCATAGCAGGCAG 59.868 52.381 0.00 0.00 0.00 4.85
120 121 1.167851 GTGACAAAGCATAGCAGGCA 58.832 50.000 0.00 0.00 0.00 4.75
121 122 0.097674 CGTGACAAAGCATAGCAGGC 59.902 55.000 0.00 0.00 0.00 4.85
122 123 1.725641 TCGTGACAAAGCATAGCAGG 58.274 50.000 0.00 0.00 0.00 4.85
123 124 2.475187 GCTTCGTGACAAAGCATAGCAG 60.475 50.000 2.93 0.00 46.63 4.24
124 125 1.464608 GCTTCGTGACAAAGCATAGCA 59.535 47.619 2.93 0.00 46.63 3.49
125 126 2.165282 GCTTCGTGACAAAGCATAGC 57.835 50.000 2.93 0.00 46.63 2.97
131 132 1.871080 AGGTGAGCTTCGTGACAAAG 58.129 50.000 0.00 0.00 0.00 2.77
132 133 2.288825 CCTAGGTGAGCTTCGTGACAAA 60.289 50.000 0.00 0.00 0.00 2.83
133 134 1.272490 CCTAGGTGAGCTTCGTGACAA 59.728 52.381 0.00 0.00 0.00 3.18
134 135 0.888619 CCTAGGTGAGCTTCGTGACA 59.111 55.000 0.00 0.00 0.00 3.58
135 136 0.458716 GCCTAGGTGAGCTTCGTGAC 60.459 60.000 11.31 0.00 0.00 3.67
136 137 1.605058 GGCCTAGGTGAGCTTCGTGA 61.605 60.000 11.31 0.00 0.00 4.35
137 138 1.153549 GGCCTAGGTGAGCTTCGTG 60.154 63.158 11.31 0.00 0.00 4.35
138 139 2.711922 CGGCCTAGGTGAGCTTCGT 61.712 63.158 11.31 0.00 0.00 3.85
139 140 2.105128 CGGCCTAGGTGAGCTTCG 59.895 66.667 11.31 0.18 0.00 3.79
140 141 1.142097 GTCGGCCTAGGTGAGCTTC 59.858 63.158 11.31 0.00 0.00 3.86
141 142 2.359967 GGTCGGCCTAGGTGAGCTT 61.360 63.158 21.10 0.00 0.00 3.74
142 143 2.760385 GGTCGGCCTAGGTGAGCT 60.760 66.667 21.10 0.00 0.00 4.09
143 144 2.760385 AGGTCGGCCTAGGTGAGC 60.760 66.667 6.89 20.93 44.90 4.26
166 167 1.840630 CGCTGGCACGTTGATGACAA 61.841 55.000 0.00 0.00 37.09 3.18
167 168 2.316867 CGCTGGCACGTTGATGACA 61.317 57.895 0.00 0.00 35.82 3.58
168 169 2.476051 CGCTGGCACGTTGATGAC 59.524 61.111 0.00 0.00 0.00 3.06
169 170 2.741985 CCGCTGGCACGTTGATGA 60.742 61.111 8.28 0.00 0.00 2.92
181 182 2.749044 ATGTTGCTCCTGCCGCTG 60.749 61.111 0.00 0.00 38.71 5.18
182 183 1.617018 TAGATGTTGCTCCTGCCGCT 61.617 55.000 0.00 0.00 38.71 5.52
183 184 1.153369 TAGATGTTGCTCCTGCCGC 60.153 57.895 0.00 0.00 38.71 6.53
184 185 0.176680 ACTAGATGTTGCTCCTGCCG 59.823 55.000 0.00 0.00 38.71 5.69
185 186 1.474143 GGACTAGATGTTGCTCCTGCC 60.474 57.143 0.00 0.00 38.71 4.85
186 187 1.804372 CGGACTAGATGTTGCTCCTGC 60.804 57.143 0.00 0.00 40.20 4.85
187 188 1.202463 CCGGACTAGATGTTGCTCCTG 60.202 57.143 0.00 0.00 0.00 3.86
188 189 1.115467 CCGGACTAGATGTTGCTCCT 58.885 55.000 0.00 0.00 0.00 3.69
189 190 0.530870 GCCGGACTAGATGTTGCTCC 60.531 60.000 5.05 0.00 0.00 4.70
190 191 0.530870 GGCCGGACTAGATGTTGCTC 60.531 60.000 5.05 0.00 0.00 4.26
191 192 0.978146 AGGCCGGACTAGATGTTGCT 60.978 55.000 9.02 0.00 0.00 3.91
192 193 0.750850 TAGGCCGGACTAGATGTTGC 59.249 55.000 14.85 0.00 0.00 4.17
193 194 2.307768 TCTAGGCCGGACTAGATGTTG 58.692 52.381 38.34 17.24 43.28 3.33
194 195 2.750141 TCTAGGCCGGACTAGATGTT 57.250 50.000 38.34 5.43 43.28 2.71
198 199 0.106819 GGTGTCTAGGCCGGACTAGA 60.107 60.000 38.34 38.34 45.29 2.43
199 200 0.395311 TGGTGTCTAGGCCGGACTAG 60.395 60.000 35.09 35.09 41.41 2.57
200 201 0.682209 GTGGTGTCTAGGCCGGACTA 60.682 60.000 18.28 18.28 35.04 2.59
201 202 1.982938 GTGGTGTCTAGGCCGGACT 60.983 63.158 17.85 17.85 35.04 3.85
202 203 1.946475 GAGTGGTGTCTAGGCCGGAC 61.946 65.000 20.15 20.15 0.00 4.79
203 204 1.681327 GAGTGGTGTCTAGGCCGGA 60.681 63.158 5.05 0.00 0.00 5.14
204 205 1.682684 AGAGTGGTGTCTAGGCCGG 60.683 63.158 0.00 0.00 0.00 6.13
205 206 1.513158 CAGAGTGGTGTCTAGGCCG 59.487 63.158 0.00 0.00 0.00 6.13
206 207 1.901085 CCAGAGTGGTGTCTAGGCC 59.099 63.158 0.00 0.00 31.35 5.19
207 208 1.219393 GCCAGAGTGGTGTCTAGGC 59.781 63.158 0.00 0.00 40.46 3.93
208 209 0.904865 TGGCCAGAGTGGTGTCTAGG 60.905 60.000 0.00 0.00 40.46 3.02
209 210 1.137872 GATGGCCAGAGTGGTGTCTAG 59.862 57.143 13.05 0.00 40.46 2.43
210 211 1.195115 GATGGCCAGAGTGGTGTCTA 58.805 55.000 13.05 0.00 40.46 2.59
211 212 1.892819 CGATGGCCAGAGTGGTGTCT 61.893 60.000 13.05 0.00 40.46 3.41
212 213 1.448540 CGATGGCCAGAGTGGTGTC 60.449 63.158 13.05 0.00 40.46 3.67
213 214 2.172483 GACGATGGCCAGAGTGGTGT 62.172 60.000 19.09 5.87 40.46 4.16
214 215 1.448540 GACGATGGCCAGAGTGGTG 60.449 63.158 19.09 2.78 40.46 4.17
215 216 2.982130 GACGATGGCCAGAGTGGT 59.018 61.111 19.09 6.40 40.46 4.16
216 217 2.202797 CGACGATGGCCAGAGTGG 60.203 66.667 19.09 14.39 41.55 4.00
217 218 2.887568 GCGACGATGGCCAGAGTG 60.888 66.667 19.09 12.51 0.00 3.51
235 236 4.920112 TTGGTGGTGGCGTGGTCG 62.920 66.667 0.00 0.00 40.37 4.79
236 237 2.517402 TTTGGTGGTGGCGTGGTC 60.517 61.111 0.00 0.00 0.00 4.02
237 238 2.518349 CTTTGGTGGTGGCGTGGT 60.518 61.111 0.00 0.00 0.00 4.16
238 239 2.070654 GAACTTTGGTGGTGGCGTGG 62.071 60.000 0.00 0.00 0.00 4.94
244 245 1.010125 CGTGCGAACTTTGGTGGTG 60.010 57.895 0.00 0.00 0.00 4.17
245 246 2.830285 GCGTGCGAACTTTGGTGGT 61.830 57.895 0.00 0.00 0.00 4.16
248 249 3.284449 GGGCGTGCGAACTTTGGT 61.284 61.111 0.00 0.00 0.00 3.67
263 264 2.648059 GGACATGAGGAAGATGTTGGG 58.352 52.381 0.00 0.00 34.10 4.12
292 293 0.677288 TGGAATCGTCGGTGTTCTGT 59.323 50.000 0.00 0.00 0.00 3.41
303 304 2.012673 GATCAGCTTGCTTGGAATCGT 58.987 47.619 0.00 0.00 0.00 3.73
333 334 0.103208 GGCGATGTCACTGAGTAGGG 59.897 60.000 0.00 0.00 0.00 3.53
337 338 0.900182 TCCTGGCGATGTCACTGAGT 60.900 55.000 0.00 0.00 0.00 3.41
364 365 0.251297 CAAAGCTGGACATCCCACCA 60.251 55.000 0.00 0.00 40.82 4.17
376 377 2.949106 CCGTCAGGCACAAAGCTG 59.051 61.111 0.00 0.00 44.79 4.24
387 388 2.805353 CTCCGTTGTCGCCGTCAG 60.805 66.667 0.00 0.00 35.54 3.51
405 406 4.194720 AGCTACGAGAAGGGCGCG 62.195 66.667 0.00 0.00 45.74 6.86
436 437 1.449601 CCTATGCCACCACCGTCAC 60.450 63.158 0.00 0.00 0.00 3.67
438 439 0.743345 GTTCCTATGCCACCACCGTC 60.743 60.000 0.00 0.00 0.00 4.79
441 442 1.032114 GCAGTTCCTATGCCACCACC 61.032 60.000 0.00 0.00 37.73 4.61
442 443 0.322456 TGCAGTTCCTATGCCACCAC 60.322 55.000 0.00 0.00 43.18 4.16
443 444 0.035152 CTGCAGTTCCTATGCCACCA 60.035 55.000 5.25 0.00 43.18 4.17
444 445 0.253044 TCTGCAGTTCCTATGCCACC 59.747 55.000 14.67 0.00 43.18 4.61
446 447 1.839354 TCATCTGCAGTTCCTATGCCA 59.161 47.619 14.67 0.00 43.18 4.92
447 448 2.216898 GTCATCTGCAGTTCCTATGCC 58.783 52.381 14.67 0.00 43.18 4.40
448 449 1.863454 CGTCATCTGCAGTTCCTATGC 59.137 52.381 14.67 5.38 44.11 3.14
449 450 1.863454 GCGTCATCTGCAGTTCCTATG 59.137 52.381 14.67 9.74 0.00 2.23
450 451 1.759445 AGCGTCATCTGCAGTTCCTAT 59.241 47.619 14.67 0.00 33.85 2.57
451 452 1.134995 CAGCGTCATCTGCAGTTCCTA 60.135 52.381 14.67 0.00 33.85 2.94
452 453 0.390866 CAGCGTCATCTGCAGTTCCT 60.391 55.000 14.67 0.23 33.85 3.36
453 454 0.390340 TCAGCGTCATCTGCAGTTCC 60.390 55.000 14.67 0.00 34.19 3.62
454 455 1.326852 CATCAGCGTCATCTGCAGTTC 59.673 52.381 14.67 2.17 34.19 3.01
455 456 1.338484 ACATCAGCGTCATCTGCAGTT 60.338 47.619 14.67 1.65 34.19 3.16
456 457 0.248565 ACATCAGCGTCATCTGCAGT 59.751 50.000 14.67 0.00 34.19 4.40
457 458 0.928922 GACATCAGCGTCATCTGCAG 59.071 55.000 7.63 7.63 35.88 4.41
458 459 0.533951 AGACATCAGCGTCATCTGCA 59.466 50.000 0.00 0.00 38.43 4.41
459 460 2.498807 TAGACATCAGCGTCATCTGC 57.501 50.000 0.00 0.00 38.43 4.26
460 461 4.298744 TCTTAGACATCAGCGTCATCTG 57.701 45.455 0.00 0.00 38.43 2.90
461 462 4.261952 CCATCTTAGACATCAGCGTCATCT 60.262 45.833 0.00 0.00 38.43 2.90
462 463 3.986572 CCATCTTAGACATCAGCGTCATC 59.013 47.826 0.00 0.00 38.43 2.92
463 464 3.638627 TCCATCTTAGACATCAGCGTCAT 59.361 43.478 0.00 0.00 38.43 3.06
464 465 3.023832 TCCATCTTAGACATCAGCGTCA 58.976 45.455 0.00 0.00 38.43 4.35
465 466 3.717400 TCCATCTTAGACATCAGCGTC 57.283 47.619 0.00 0.00 36.08 5.19
466 467 3.638627 TCATCCATCTTAGACATCAGCGT 59.361 43.478 0.00 0.00 0.00 5.07
467 468 3.986572 GTCATCCATCTTAGACATCAGCG 59.013 47.826 0.00 0.00 0.00 5.18
468 469 4.314121 GGTCATCCATCTTAGACATCAGC 58.686 47.826 0.00 0.00 32.79 4.26
469 470 4.262808 GGGGTCATCCATCTTAGACATCAG 60.263 50.000 0.00 0.00 37.22 2.90
470 471 3.648067 GGGGTCATCCATCTTAGACATCA 59.352 47.826 0.00 0.00 37.22 3.07
471 472 3.008485 GGGGGTCATCCATCTTAGACATC 59.992 52.174 0.00 0.00 37.22 3.06
472 473 2.982488 GGGGGTCATCCATCTTAGACAT 59.018 50.000 0.00 0.00 37.22 3.06
473 474 2.408565 GGGGGTCATCCATCTTAGACA 58.591 52.381 0.00 0.00 37.22 3.41
490 491 0.613853 TGACGTCTAGGTTCTGGGGG 60.614 60.000 17.92 0.00 0.00 5.40
491 492 1.137086 CATGACGTCTAGGTTCTGGGG 59.863 57.143 17.92 0.00 0.00 4.96
492 493 2.100197 TCATGACGTCTAGGTTCTGGG 58.900 52.381 17.92 0.00 0.00 4.45
493 494 4.115516 CAATCATGACGTCTAGGTTCTGG 58.884 47.826 17.92 0.00 0.00 3.86
494 495 4.564372 CACAATCATGACGTCTAGGTTCTG 59.436 45.833 17.92 5.97 0.00 3.02
495 496 4.748892 CACAATCATGACGTCTAGGTTCT 58.251 43.478 17.92 0.00 0.00 3.01
496 497 3.307242 GCACAATCATGACGTCTAGGTTC 59.693 47.826 17.92 0.00 0.00 3.62
497 498 3.055819 AGCACAATCATGACGTCTAGGTT 60.056 43.478 17.92 8.73 0.00 3.50
498 499 2.497675 AGCACAATCATGACGTCTAGGT 59.502 45.455 17.92 2.17 0.00 3.08
499 500 3.170791 AGCACAATCATGACGTCTAGG 57.829 47.619 17.92 6.24 0.00 3.02
500 501 3.928992 ACAAGCACAATCATGACGTCTAG 59.071 43.478 17.92 9.24 0.00 2.43
501 502 3.925379 ACAAGCACAATCATGACGTCTA 58.075 40.909 17.92 3.52 0.00 2.59
502 503 2.738846 GACAAGCACAATCATGACGTCT 59.261 45.455 17.92 0.00 0.00 4.18
503 504 2.159653 GGACAAGCACAATCATGACGTC 60.160 50.000 9.11 9.11 0.00 4.34
504 505 1.806542 GGACAAGCACAATCATGACGT 59.193 47.619 0.00 0.00 0.00 4.34
505 506 2.079158 AGGACAAGCACAATCATGACG 58.921 47.619 0.00 0.00 0.00 4.35
506 507 2.421424 GGAGGACAAGCACAATCATGAC 59.579 50.000 0.00 0.00 0.00 3.06
507 508 2.306805 AGGAGGACAAGCACAATCATGA 59.693 45.455 0.00 0.00 0.00 3.07
508 509 2.422479 CAGGAGGACAAGCACAATCATG 59.578 50.000 0.00 0.00 0.00 3.07
509 510 2.719739 CAGGAGGACAAGCACAATCAT 58.280 47.619 0.00 0.00 0.00 2.45
510 511 1.883638 GCAGGAGGACAAGCACAATCA 60.884 52.381 0.00 0.00 0.00 2.57
511 512 0.807496 GCAGGAGGACAAGCACAATC 59.193 55.000 0.00 0.00 0.00 2.67
512 513 0.610232 GGCAGGAGGACAAGCACAAT 60.610 55.000 0.00 0.00 0.00 2.71
513 514 1.228245 GGCAGGAGGACAAGCACAA 60.228 57.895 0.00 0.00 0.00 3.33
514 515 1.782201 ATGGCAGGAGGACAAGCACA 61.782 55.000 0.00 0.00 38.69 4.57
515 516 1.001641 ATGGCAGGAGGACAAGCAC 60.002 57.895 0.00 0.00 38.69 4.40
520 854 3.016971 CCCCATGGCAGGAGGACA 61.017 66.667 6.09 0.00 40.35 4.02
550 884 5.769484 TCTAAACATTAAAAACGCCCACA 57.231 34.783 0.00 0.00 0.00 4.17
574 908 5.069518 ACCCACCATTACCATTTATACCC 57.930 43.478 0.00 0.00 0.00 3.69
590 924 0.035820 TCACATTTAGCCGACCCACC 60.036 55.000 0.00 0.00 0.00 4.61
591 925 1.467342 GTTCACATTTAGCCGACCCAC 59.533 52.381 0.00 0.00 0.00 4.61
628 962 3.489636 TGGGCTCCCATTCGACAA 58.510 55.556 2.93 0.00 41.89 3.18
638 972 6.095021 CCACTTAAACTATTTTAGTGGGCTCC 59.905 42.308 22.86 0.00 39.63 4.70
641 975 6.203808 CCCACTTAAACTATTTTAGTGGGC 57.796 41.667 30.71 0.00 46.23 5.36
643 977 7.832187 TCCATCCCACTTAAACTATTTTAGTGG 59.168 37.037 23.33 23.33 41.02 4.00
645 979 8.612145 AGTCCATCCCACTTAAACTATTTTAGT 58.388 33.333 0.00 0.00 41.73 2.24
651 985 6.831664 ATCAGTCCATCCCACTTAAACTAT 57.168 37.500 0.00 0.00 0.00 2.12
669 1003 6.215636 AGTGGAATTAAGTGGGACTAATCAGT 59.784 38.462 0.00 0.00 37.87 3.41
689 1023 1.275291 GGTCATCCGAGTGAAAGTGGA 59.725 52.381 0.00 0.00 34.45 4.02
696 1030 0.904649 ATGCAAGGTCATCCGAGTGA 59.095 50.000 0.00 0.00 39.05 3.41
697 1031 2.602257 TATGCAAGGTCATCCGAGTG 57.398 50.000 0.00 0.00 39.05 3.51
699 1033 6.618287 TTTTTATATGCAAGGTCATCCGAG 57.382 37.500 0.00 0.00 39.05 4.63
700 1034 6.016360 CCATTTTTATATGCAAGGTCATCCGA 60.016 38.462 0.00 0.00 39.05 4.55
701 1035 6.016360 TCCATTTTTATATGCAAGGTCATCCG 60.016 38.462 0.00 0.00 39.05 4.18
703 1037 7.231317 TCCTCCATTTTTATATGCAAGGTCATC 59.769 37.037 0.00 0.00 32.76 2.92
704 1038 7.068702 TCCTCCATTTTTATATGCAAGGTCAT 58.931 34.615 0.00 0.00 32.76 3.06
705 1039 6.430864 TCCTCCATTTTTATATGCAAGGTCA 58.569 36.000 0.00 0.00 32.76 4.02
706 1040 6.959639 TCCTCCATTTTTATATGCAAGGTC 57.040 37.500 0.00 0.00 32.76 3.85
708 1042 7.352079 ACTTCCTCCATTTTTATATGCAAGG 57.648 36.000 0.00 0.00 32.46 3.61
743 1081 8.630037 CCCGCAGTTCCTAAATTTAATATTTCT 58.370 33.333 0.00 0.00 0.00 2.52
744 1082 8.626526 TCCCGCAGTTCCTAAATTTAATATTTC 58.373 33.333 0.00 0.00 0.00 2.17
766 1104 5.354234 AGTGTTTTATTTACAGCATCTCCCG 59.646 40.000 0.00 0.00 0.00 5.14
794 1135 0.248539 GGATAGGCGACGTCTCACAC 60.249 60.000 14.70 0.00 0.00 3.82
795 1136 0.393944 AGGATAGGCGACGTCTCACA 60.394 55.000 14.70 0.00 0.00 3.58
861 1205 2.418910 GCAGCCTCAGGACGAGCTA 61.419 63.158 0.00 0.00 40.78 3.32
1390 1734 4.042684 AGCTTCTTCTCCAAGACCATTCTT 59.957 41.667 0.00 0.00 43.35 2.52
1416 1760 0.320771 GCATCTGGTGGTATAGCCCG 60.321 60.000 0.00 0.00 36.04 6.13
1518 1862 1.152860 TTGGACATGCACCAACCGT 60.153 52.632 17.37 0.00 41.64 4.83
1527 1871 3.641437 TGCTTGTAAACTTGGACATGC 57.359 42.857 0.00 6.07 43.43 4.06
1566 1910 1.917872 TAAGTGCATTCCCCACAACC 58.082 50.000 0.00 0.00 35.69 3.77
1606 1950 4.223032 TCTTTCCGCCAGACTAAAAGATCT 59.777 41.667 0.00 0.00 32.57 2.75
1617 1961 4.020573 TCAGAAAATACTCTTTCCGCCAGA 60.021 41.667 0.00 0.00 36.18 3.86
1731 2075 1.449246 GCCTGACAAGCGCATCTCT 60.449 57.895 11.47 0.00 0.00 3.10
1787 2131 1.550524 CACCAGTAGAGGCACAAGCTA 59.449 52.381 0.00 0.00 41.70 3.32
1802 2146 3.565764 TGCCCTTATTCAGATCACCAG 57.434 47.619 0.00 0.00 0.00 4.00
1806 2150 3.548770 CTGCTTGCCCTTATTCAGATCA 58.451 45.455 0.00 0.00 0.00 2.92
1863 2207 7.865706 AAGCGAACCTTCAATTATGTAATCT 57.134 32.000 0.00 0.00 0.00 2.40
1923 2267 2.349580 CGATTTGAAGATCTTGAGCGCA 59.650 45.455 14.00 0.72 0.00 6.09
1926 2270 3.064545 CACCCGATTTGAAGATCTTGAGC 59.935 47.826 14.00 0.00 0.00 4.26
1930 2274 5.366768 TCCTATCACCCGATTTGAAGATCTT 59.633 40.000 7.95 7.95 32.73 2.40
1999 2343 9.495754 GTCAAATGATTTTGCTAGATCACTAAC 57.504 33.333 3.59 0.00 41.66 2.34
2307 2651 1.412343 TCAAGGGCCTCTTTGCAAAAC 59.588 47.619 13.84 3.19 32.41 2.43
2478 2822 3.129638 GGTTTACCAGCGCATTCCAAATA 59.870 43.478 11.47 0.00 35.64 1.40
2857 3201 1.076332 GACACATCGTTCCTTTCGGG 58.924 55.000 0.00 0.00 0.00 5.14
3045 3389 3.443099 TGCTCACTAGACATGGATTCG 57.557 47.619 0.00 0.00 0.00 3.34
3254 3598 3.622630 TGAGGCTCTAACTCCAGTAGAC 58.377 50.000 16.72 0.00 34.06 2.59
3390 3734 5.654603 TCTTTACTTCAATCCAGCTACGA 57.345 39.130 0.00 0.00 0.00 3.43
3459 3803 8.415553 TCAGCCAAATATTTGTAAATCTGATGG 58.584 33.333 23.24 8.38 36.45 3.51
3495 3839 9.055689 TGTATGTACCCTATTTTGGTTAACCTA 57.944 33.333 24.78 15.42 37.31 3.08
3502 3846 5.493250 TCCCTTGTATGTACCCTATTTTGGT 59.507 40.000 0.00 0.00 39.97 3.67
3518 3862 8.770010 TTGGAAAAGAAAATAGTTCCCTTGTA 57.230 30.769 0.00 0.00 39.06 2.41
3712 4056 6.820656 ACATCTCGCAATACAATTTCTCTTCT 59.179 34.615 0.00 0.00 0.00 2.85
3741 4085 7.901029 TGCCATTGTTAAAATGGTGAAATCTA 58.099 30.769 14.94 0.00 46.81 1.98
3794 4138 7.481798 CACTTCAAGAACTTAACTTCAACACAC 59.518 37.037 0.00 0.00 0.00 3.82
3919 4265 5.305386 GGGCTGGCTTCCAAATTTAGATATT 59.695 40.000 0.00 0.00 30.80 1.28
3942 4288 3.756434 ACCTGTTTTGTGGTATTGATCGG 59.244 43.478 0.00 0.00 34.36 4.18
4000 4346 9.811995 AAAGCATGTTATAGACAAGAATACGTA 57.188 29.630 0.00 0.00 42.62 3.57
4150 4498 2.009681 AACCAAGTGGGGCCTTAAAG 57.990 50.000 0.84 0.00 42.91 1.85
4153 4501 0.558712 ACAAACCAAGTGGGGCCTTA 59.441 50.000 0.84 0.00 42.91 2.69
4174 4522 1.666553 CCTGTACCGTTGCTTCGCA 60.667 57.895 0.00 0.00 36.47 5.10
4176 4524 1.012486 GGACCTGTACCGTTGCTTCG 61.012 60.000 0.00 0.00 0.00 3.79
4185 4533 1.187087 CAGTGAGAGGGACCTGTACC 58.813 60.000 0.00 0.00 0.00 3.34
4191 4539 3.425162 AAATCAACAGTGAGAGGGACC 57.575 47.619 0.00 0.00 37.14 4.46
4203 4552 8.333235 AGTACATATTACCCTGGAAAATCAACA 58.667 33.333 0.00 0.00 0.00 3.33
4270 4619 1.059913 GGCTGGTAGCATATGGACCT 58.940 55.000 4.56 0.00 44.75 3.85
4271 4620 0.320771 CGGCTGGTAGCATATGGACC 60.321 60.000 4.56 0.00 44.75 4.46
4272 4621 0.679505 TCGGCTGGTAGCATATGGAC 59.320 55.000 4.56 0.00 44.75 4.02
4306 4993 0.471211 ACTTGGGGAGGACGAGAACA 60.471 55.000 0.00 0.00 0.00 3.18
4328 5015 1.160137 GCAGTGACAGGGACATTGAC 58.840 55.000 0.00 0.00 0.00 3.18
4339 5026 2.881266 GCAAACGAGCGCAGTGACA 61.881 57.895 11.47 0.00 0.00 3.58
4357 5044 6.767456 AGTCATGAATTAGATCAAGCTAGGG 58.233 40.000 0.00 0.00 32.06 3.53
4389 5076 2.404215 CAACTAATAGGGGCGTCATCG 58.596 52.381 0.00 0.00 40.37 3.84
4407 5095 2.975732 TTGCATTTCAACCACAGCAA 57.024 40.000 0.00 0.00 39.38 3.91
4539 5227 0.740149 TATCGGATGTACAACGCCGT 59.260 50.000 24.88 17.83 38.96 5.68
4540 5228 1.002142 TCTATCGGATGTACAACGCCG 60.002 52.381 21.97 21.97 39.15 6.46
4545 5233 3.181469 GCCACCTTCTATCGGATGTACAA 60.181 47.826 0.00 0.00 0.00 2.41
4566 5254 3.069443 TGAAAACCTTTCCATCAGTTGGC 59.931 43.478 0.00 0.00 46.01 4.52
4575 5263 1.408702 GCTGTGCTGAAAACCTTTCCA 59.591 47.619 0.00 0.00 0.00 3.53
4583 5271 3.084039 CAAGATAGGGCTGTGCTGAAAA 58.916 45.455 0.00 0.00 0.00 2.29
4586 5274 1.571955 TCAAGATAGGGCTGTGCTGA 58.428 50.000 0.00 0.00 0.00 4.26
4627 5316 2.932614 CTGCGGGTATCTGTTGAAAGAG 59.067 50.000 0.00 0.00 0.00 2.85
4637 5326 0.831307 GGAGAAACCTGCGGGTATCT 59.169 55.000 20.05 5.51 46.67 1.98
4666 5355 1.451927 GATGCGGTGGAGATGGCAA 60.452 57.895 0.00 0.00 39.09 4.52
4671 5360 3.550431 CGGGGATGCGGTGGAGAT 61.550 66.667 0.00 0.00 0.00 2.75
4689 5378 4.193334 TGAGCGGAGTCGATGCGG 62.193 66.667 9.82 1.92 43.95 5.69
4690 5379 2.653448 CTGAGCGGAGTCGATGCG 60.653 66.667 0.00 0.00 46.94 4.73
4691 5380 1.587613 GTCTGAGCGGAGTCGATGC 60.588 63.158 0.00 0.00 39.00 3.91
4692 5381 1.297967 CGTCTGAGCGGAGTCGATG 60.298 63.158 0.00 0.00 39.00 3.84
4693 5382 3.102985 CGTCTGAGCGGAGTCGAT 58.897 61.111 0.00 0.00 39.00 3.59
4718 5407 4.505922 GGAGAAACATATGAAGCTCGTCTG 59.494 45.833 10.38 0.00 0.00 3.51
4719 5408 4.404073 AGGAGAAACATATGAAGCTCGTCT 59.596 41.667 10.38 3.74 0.00 4.18
4734 5423 1.002792 GTGGCAAACACGAGGAGAAAC 60.003 52.381 0.00 0.00 40.85 2.78
4773 5462 2.438614 TGAGGAGGCTCGTCGGAG 60.439 66.667 26.60 0.00 43.46 4.63
4788 5477 1.033202 TCTGGCGTATAGTGCGGTGA 61.033 55.000 0.00 0.00 0.00 4.02
4814 5503 4.444838 TCGATGCGGTGGGGAACG 62.445 66.667 0.00 0.00 33.59 3.95
4822 5511 2.038837 TCAGACTCGTCGATGCGGT 61.039 57.895 0.00 1.18 34.09 5.68
4854 5543 0.109781 CAATTCGGCGAGTGTTTGGG 60.110 55.000 10.46 0.00 0.00 4.12
4855 5544 0.109781 CCAATTCGGCGAGTGTTTGG 60.110 55.000 20.54 20.54 0.00 3.28
4875 5564 4.847444 GGCGAGGAGGCTTGAGGC 62.847 72.222 0.00 0.00 42.90 4.70
4955 5645 0.694771 AGATGCCAGCTTCTCACCAA 59.305 50.000 2.40 0.00 0.00 3.67
4958 5648 1.759445 TCCTAGATGCCAGCTTCTCAC 59.241 52.381 10.94 0.00 33.40 3.51
4959 5649 2.037901 CTCCTAGATGCCAGCTTCTCA 58.962 52.381 10.94 0.00 33.40 3.27
5008 5698 2.152016 GGCGAGTTAAGAACAAAGGCT 58.848 47.619 0.00 0.00 0.00 4.58
5022 5712 3.070018 CAGTCTTCTTCAAATGGCGAGT 58.930 45.455 0.00 0.00 0.00 4.18
5040 5730 8.515414 GTCAAATGGAAAATTAGCTAACTCAGT 58.485 33.333 8.70 0.00 0.00 3.41
5070 5761 7.614908 CACAATTCACACAGAAAATTGACTTG 58.385 34.615 12.51 0.00 40.97 3.16
5099 5790 6.801862 AGCATGCTTCGTATTTTAAACAAGAC 59.198 34.615 16.30 0.00 0.00 3.01
5119 5810 5.163864 TGTTTTAGTATCGACAAGCAGCATG 60.164 40.000 0.00 0.00 40.87 4.06
5120 5811 4.935205 TGTTTTAGTATCGACAAGCAGCAT 59.065 37.500 0.00 0.00 0.00 3.79
5121 5812 4.311606 TGTTTTAGTATCGACAAGCAGCA 58.688 39.130 0.00 0.00 0.00 4.41
5122 5813 4.921470 TGTTTTAGTATCGACAAGCAGC 57.079 40.909 0.00 0.00 0.00 5.25
5123 5814 6.888430 ACTTTGTTTTAGTATCGACAAGCAG 58.112 36.000 0.00 0.00 33.97 4.24
5124 5815 6.854496 ACTTTGTTTTAGTATCGACAAGCA 57.146 33.333 0.00 0.00 33.97 3.91
5136 5827 9.956720 GGATTCATCCATGATACTTTGTTTTAG 57.043 33.333 0.51 0.00 46.38 1.85
5170 5861 4.492646 TCTGCCACTCCTATTCATCCATA 58.507 43.478 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.