Multiple sequence alignment - TraesCS5D01G104000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G104000 chr5D 100.000 2285 0 0 1 2285 117769748 117767464 0.000000e+00 4220
1 TraesCS5D01G104000 chr5D 92.369 747 55 2 1538 2283 69324385 69325130 0.000000e+00 1062
2 TraesCS5D01G104000 chr5D 92.578 741 47 6 1545 2281 398359224 398359960 0.000000e+00 1057
3 TraesCS5D01G104000 chr5D 91.989 749 57 3 1538 2285 188386181 188386927 0.000000e+00 1048
4 TraesCS5D01G104000 chr5D 91.979 748 58 2 1538 2284 486861953 486862699 0.000000e+00 1048
5 TraesCS5D01G104000 chr5D 91.549 497 39 3 1 496 508116216 508116710 0.000000e+00 682
6 TraesCS5D01G104000 chr2D 92.390 749 53 4 1538 2285 608439458 608438713 0.000000e+00 1064
7 TraesCS5D01G104000 chr2D 92.318 742 52 4 1546 2285 538774962 538775700 0.000000e+00 1050
8 TraesCS5D01G104000 chr2D 91.989 749 57 3 1538 2285 601712898 601713644 0.000000e+00 1048
9 TraesCS5D01G104000 chr2D 91.785 633 31 8 853 1470 203443257 203443883 0.000000e+00 861
10 TraesCS5D01G104000 chr2D 96.715 487 16 0 1 487 118242290 118242776 0.000000e+00 811
11 TraesCS5D01G104000 chr2D 94.433 485 27 0 1 485 64607203 64606719 0.000000e+00 747
12 TraesCS5D01G104000 chr2D 87.956 631 55 12 853 1470 122037206 122036584 0.000000e+00 725
13 TraesCS5D01G104000 chr2D 88.306 496 57 1 1 496 604744458 604743964 5.430000e-166 593
14 TraesCS5D01G104000 chr2D 94.203 207 11 1 497 702 203427904 203428110 4.740000e-82 315
15 TraesCS5D01G104000 chr2D 92.810 153 9 2 702 853 203428143 203428294 1.060000e-53 220
16 TraesCS5D01G104000 chr7A 90.217 828 62 9 1466 2282 728291824 728292643 0.000000e+00 1062
17 TraesCS5D01G104000 chr7D 92.256 749 53 5 1538 2284 161189650 161190395 0.000000e+00 1057
18 TraesCS5D01G104000 chr6D 96.573 496 17 0 1 496 453694584 453695079 0.000000e+00 822
19 TraesCS5D01G104000 chr6D 86.486 629 40 18 855 1470 2990179 2990775 0.000000e+00 649
20 TraesCS5D01G104000 chr6D 89.163 203 15 3 501 702 2988139 2988335 1.750000e-61 246
21 TraesCS5D01G104000 chr6D 94.231 156 6 3 700 853 2989787 2989941 3.790000e-58 235
22 TraesCS5D01G104000 chr1D 96.091 486 19 0 1 486 455769119 455769604 0.000000e+00 793
23 TraesCS5D01G104000 chr6B 88.114 631 56 11 853 1470 437147950 437147326 0.000000e+00 732
24 TraesCS5D01G104000 chr6B 89.940 497 46 4 4 499 22235672 22235179 2.480000e-179 638
25 TraesCS5D01G104000 chr1B 87.797 631 58 11 853 1470 374334021 374334645 0.000000e+00 721
26 TraesCS5D01G104000 chr1B 89.172 157 10 5 700 855 350380205 350380055 3.000000e-44 189
27 TraesCS5D01G104000 chr6A 87.639 631 58 12 853 1470 457604741 457604118 0.000000e+00 715
28 TraesCS5D01G104000 chr6A 87.382 634 55 15 853 1470 457587339 457586715 0.000000e+00 704
29 TraesCS5D01G104000 chr6A 90.381 499 44 4 1 498 170552415 170552910 0.000000e+00 652
30 TraesCS5D01G104000 chrUn 87.500 632 59 12 853 1470 62694964 62694339 0.000000e+00 712
31 TraesCS5D01G104000 chr3B 87.480 631 60 11 853 1470 725372002 725372626 0.000000e+00 710
32 TraesCS5D01G104000 chr3D 86.076 632 57 13 853 1471 194686848 194687461 0.000000e+00 651
33 TraesCS5D01G104000 chr3D 89.228 492 36 6 993 1470 610875253 610875741 1.170000e-167 599
34 TraesCS5D01G104000 chr3D 94.393 214 10 2 497 708 55751892 55751679 6.090000e-86 327
35 TraesCS5D01G104000 chr3D 95.484 155 6 1 700 853 55751656 55751502 1.750000e-61 246
36 TraesCS5D01G104000 chr3D 80.519 308 36 13 567 853 610792496 610792800 4.940000e-52 215
37 TraesCS5D01G104000 chr3D 91.000 100 6 3 700 797 610873864 610873962 5.120000e-27 132
38 TraesCS5D01G104000 chr2B 88.153 498 57 1 1 496 746632170 746632667 1.950000e-165 592
39 TraesCS5D01G104000 chr2B 94.393 214 10 2 497 708 744183000 744183213 6.090000e-86 327
40 TraesCS5D01G104000 chr2B 93.548 155 9 1 700 853 744183236 744183390 1.770000e-56 230
41 TraesCS5D01G104000 chr2A 89.150 341 24 3 1138 1465 616203663 616203323 1.630000e-111 412
42 TraesCS5D01G104000 chr1A 84.709 412 47 8 1073 1470 568133356 568132947 4.570000e-107 398
43 TraesCS5D01G104000 chr1A 84.709 412 47 8 1073 1470 568135407 568134998 4.570000e-107 398
44 TraesCS5D01G104000 chr1A 84.709 412 47 8 1073 1470 568138807 568138398 4.570000e-107 398
45 TraesCS5D01G104000 chr4B 84.488 361 28 12 519 853 63992387 63992029 4.700000e-87 331
46 TraesCS5D01G104000 chr3A 86.719 256 25 9 1219 1470 132221348 132221598 2.240000e-70 276
47 TraesCS5D01G104000 chr3A 96.053 152 4 2 700 849 401731940 401732091 1.750000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G104000 chr5D 117767464 117769748 2284 True 4220.000000 4220 100.000 1 2285 1 chr5D.!!$R1 2284
1 TraesCS5D01G104000 chr5D 69324385 69325130 745 False 1062.000000 1062 92.369 1538 2283 1 chr5D.!!$F1 745
2 TraesCS5D01G104000 chr5D 398359224 398359960 736 False 1057.000000 1057 92.578 1545 2281 1 chr5D.!!$F3 736
3 TraesCS5D01G104000 chr5D 188386181 188386927 746 False 1048.000000 1048 91.989 1538 2285 1 chr5D.!!$F2 747
4 TraesCS5D01G104000 chr5D 486861953 486862699 746 False 1048.000000 1048 91.979 1538 2284 1 chr5D.!!$F4 746
5 TraesCS5D01G104000 chr2D 608438713 608439458 745 True 1064.000000 1064 92.390 1538 2285 1 chr2D.!!$R4 747
6 TraesCS5D01G104000 chr2D 538774962 538775700 738 False 1050.000000 1050 92.318 1546 2285 1 chr2D.!!$F3 739
7 TraesCS5D01G104000 chr2D 601712898 601713644 746 False 1048.000000 1048 91.989 1538 2285 1 chr2D.!!$F4 747
8 TraesCS5D01G104000 chr2D 203443257 203443883 626 False 861.000000 861 91.785 853 1470 1 chr2D.!!$F2 617
9 TraesCS5D01G104000 chr2D 122036584 122037206 622 True 725.000000 725 87.956 853 1470 1 chr2D.!!$R2 617
10 TraesCS5D01G104000 chr7A 728291824 728292643 819 False 1062.000000 1062 90.217 1466 2282 1 chr7A.!!$F1 816
11 TraesCS5D01G104000 chr7D 161189650 161190395 745 False 1057.000000 1057 92.256 1538 2284 1 chr7D.!!$F1 746
12 TraesCS5D01G104000 chr6D 2988139 2990775 2636 False 376.666667 649 89.960 501 1470 3 chr6D.!!$F2 969
13 TraesCS5D01G104000 chr6B 437147326 437147950 624 True 732.000000 732 88.114 853 1470 1 chr6B.!!$R2 617
14 TraesCS5D01G104000 chr1B 374334021 374334645 624 False 721.000000 721 87.797 853 1470 1 chr1B.!!$F1 617
15 TraesCS5D01G104000 chr6A 457604118 457604741 623 True 715.000000 715 87.639 853 1470 1 chr6A.!!$R2 617
16 TraesCS5D01G104000 chr6A 457586715 457587339 624 True 704.000000 704 87.382 853 1470 1 chr6A.!!$R1 617
17 TraesCS5D01G104000 chrUn 62694339 62694964 625 True 712.000000 712 87.500 853 1470 1 chrUn.!!$R1 617
18 TraesCS5D01G104000 chr3B 725372002 725372626 624 False 710.000000 710 87.480 853 1470 1 chr3B.!!$F1 617
19 TraesCS5D01G104000 chr3D 194686848 194687461 613 False 651.000000 651 86.076 853 1471 1 chr3D.!!$F1 618
20 TraesCS5D01G104000 chr3D 610873864 610875741 1877 False 365.500000 599 90.114 700 1470 2 chr3D.!!$F3 770
21 TraesCS5D01G104000 chr1A 568132947 568138807 5860 True 398.000000 398 84.709 1073 1470 3 chr1A.!!$R1 397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 0.039888 AAACGCACCGGTAATGTTGC 60.04 50.0 6.87 4.21 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 6456 0.108615 GGCTCGCTAGTTTCTCTGCA 60.109 55.0 0.0 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.984422 ATCAATTCTGATGATGCGGTTAATA 57.016 32.000 0.00 0.00 40.94 0.98
25 26 7.800155 TCAATTCTGATGATGCGGTTAATAA 57.200 32.000 0.00 0.00 0.00 1.40
26 27 8.219546 TCAATTCTGATGATGCGGTTAATAAA 57.780 30.769 0.00 0.00 0.00 1.40
28 29 6.618287 TTCTGATGATGCGGTTAATAAAGG 57.382 37.500 0.00 0.00 0.00 3.11
30 31 5.991606 TCTGATGATGCGGTTAATAAAGGAG 59.008 40.000 0.00 0.00 0.00 3.69
31 32 5.063204 TGATGATGCGGTTAATAAAGGAGG 58.937 41.667 0.00 0.00 0.00 4.30
32 33 3.815809 TGATGCGGTTAATAAAGGAGGG 58.184 45.455 0.00 0.00 0.00 4.30
33 34 3.456644 TGATGCGGTTAATAAAGGAGGGA 59.543 43.478 0.00 0.00 0.00 4.20
34 35 3.553828 TGCGGTTAATAAAGGAGGGAG 57.446 47.619 0.00 0.00 0.00 4.30
35 36 2.841881 TGCGGTTAATAAAGGAGGGAGT 59.158 45.455 0.00 0.00 0.00 3.85
36 37 4.032310 TGCGGTTAATAAAGGAGGGAGTA 58.968 43.478 0.00 0.00 0.00 2.59
38 39 5.055144 GCGGTTAATAAAGGAGGGAGTAAG 58.945 45.833 0.00 0.00 0.00 2.34
39 40 5.608449 CGGTTAATAAAGGAGGGAGTAAGG 58.392 45.833 0.00 0.00 0.00 2.69
40 41 5.374921 GGTTAATAAAGGAGGGAGTAAGGC 58.625 45.833 0.00 0.00 0.00 4.35
41 42 5.132312 GGTTAATAAAGGAGGGAGTAAGGCT 59.868 44.000 0.00 0.00 0.00 4.58
44 45 3.493475 AAAGGAGGGAGTAAGGCTAGT 57.507 47.619 0.00 0.00 0.00 2.57
45 46 2.463047 AGGAGGGAGTAAGGCTAGTG 57.537 55.000 0.00 0.00 0.00 2.74
46 47 1.062810 AGGAGGGAGTAAGGCTAGTGG 60.063 57.143 0.00 0.00 0.00 4.00
48 49 1.757699 GAGGGAGTAAGGCTAGTGGTG 59.242 57.143 0.00 0.00 0.00 4.17
49 50 0.831307 GGGAGTAAGGCTAGTGGTGG 59.169 60.000 0.00 0.00 0.00 4.61
50 51 1.621622 GGGAGTAAGGCTAGTGGTGGA 60.622 57.143 0.00 0.00 0.00 4.02
51 52 1.757699 GGAGTAAGGCTAGTGGTGGAG 59.242 57.143 0.00 0.00 0.00 3.86
52 53 1.137282 GAGTAAGGCTAGTGGTGGAGC 59.863 57.143 0.00 0.00 38.00 4.70
53 54 0.179108 GTAAGGCTAGTGGTGGAGCG 60.179 60.000 0.00 0.00 39.72 5.03
54 55 1.327690 TAAGGCTAGTGGTGGAGCGG 61.328 60.000 0.00 0.00 39.72 5.52
56 57 2.125512 GCTAGTGGTGGAGCGGTG 60.126 66.667 0.00 0.00 0.00 4.94
57 58 2.125512 CTAGTGGTGGAGCGGTGC 60.126 66.667 0.00 0.00 0.00 5.01
58 59 2.603473 TAGTGGTGGAGCGGTGCT 60.603 61.111 7.84 0.00 43.88 4.40
59 60 2.172483 CTAGTGGTGGAGCGGTGCTT 62.172 60.000 7.84 0.00 39.88 3.91
60 61 2.167398 TAGTGGTGGAGCGGTGCTTC 62.167 60.000 7.84 0.54 39.88 3.86
61 62 4.680237 TGGTGGAGCGGTGCTTCG 62.680 66.667 7.84 0.00 39.88 3.79
73 74 1.308998 GTGCTTCGGGACCATAATGG 58.691 55.000 0.00 0.00 45.02 3.16
74 75 0.182537 TGCTTCGGGACCATAATGGG 59.817 55.000 0.00 0.00 43.37 4.00
75 76 0.537371 GCTTCGGGACCATAATGGGG 60.537 60.000 0.00 0.00 43.37 4.96
76 77 0.537371 CTTCGGGACCATAATGGGGC 60.537 60.000 0.00 0.00 43.37 5.80
78 79 1.065410 TCGGGACCATAATGGGGCAT 61.065 55.000 0.00 0.00 43.37 4.40
79 80 0.178964 CGGGACCATAATGGGGCATT 60.179 55.000 0.00 0.00 43.37 3.56
81 82 1.970640 GGGACCATAATGGGGCATTTC 59.029 52.381 0.00 0.00 43.37 2.17
82 83 2.426268 GGGACCATAATGGGGCATTTCT 60.426 50.000 0.00 0.00 43.37 2.52
83 84 2.629617 GGACCATAATGGGGCATTTCTG 59.370 50.000 0.00 0.00 43.37 3.02
84 85 2.629617 GACCATAATGGGGCATTTCTGG 59.370 50.000 0.00 0.00 43.37 3.86
91 92 2.044946 GGCATTTCTGGCCGGAGT 60.045 61.111 15.42 4.97 42.39 3.85
92 93 2.409870 GGCATTTCTGGCCGGAGTG 61.410 63.158 15.42 17.96 42.39 3.51
93 94 1.675641 GCATTTCTGGCCGGAGTGT 60.676 57.895 22.74 9.47 0.00 3.55
94 95 1.926511 GCATTTCTGGCCGGAGTGTG 61.927 60.000 22.74 19.01 0.00 3.82
95 96 1.675641 ATTTCTGGCCGGAGTGTGC 60.676 57.895 15.42 0.00 0.00 4.57
101 102 2.124570 GCCGGAGTGTGCCATCAT 60.125 61.111 5.05 0.00 0.00 2.45
102 103 1.750399 GCCGGAGTGTGCCATCATT 60.750 57.895 5.05 0.00 0.00 2.57
105 106 1.133025 CCGGAGTGTGCCATCATTTTC 59.867 52.381 0.00 0.00 0.00 2.29
106 107 1.133025 CGGAGTGTGCCATCATTTTCC 59.867 52.381 0.00 0.00 0.00 3.13
107 108 2.170166 GGAGTGTGCCATCATTTTCCA 58.830 47.619 0.00 0.00 0.00 3.53
108 109 2.094545 GGAGTGTGCCATCATTTTCCAC 60.095 50.000 0.00 0.00 0.00 4.02
109 110 2.557924 GAGTGTGCCATCATTTTCCACA 59.442 45.455 0.00 0.00 34.38 4.17
111 112 2.314246 TGTGCCATCATTTTCCACACA 58.686 42.857 0.00 0.00 34.43 3.72
113 114 3.324268 TGTGCCATCATTTTCCACACATT 59.676 39.130 0.00 0.00 32.06 2.71
115 116 3.324268 TGCCATCATTTTCCACACATTGT 59.676 39.130 0.00 0.00 0.00 2.71
124 125 3.327600 CACACATTGTGGAGCCTGA 57.672 52.632 20.33 0.00 44.27 3.86
126 127 1.955778 CACACATTGTGGAGCCTGAAA 59.044 47.619 20.33 0.00 44.27 2.69
127 128 1.956477 ACACATTGTGGAGCCTGAAAC 59.044 47.619 20.33 0.00 37.94 2.78
128 129 1.955778 CACATTGTGGAGCCTGAAACA 59.044 47.619 9.00 0.00 0.00 2.83
130 131 1.068055 CATTGTGGAGCCTGAAACAGC 60.068 52.381 0.00 0.00 0.00 4.40
131 132 1.165907 TTGTGGAGCCTGAAACAGCG 61.166 55.000 0.00 0.00 0.00 5.18
132 133 2.032528 TGGAGCCTGAAACAGCGG 59.967 61.111 0.00 0.00 0.00 5.52
133 134 2.747855 GGAGCCTGAAACAGCGGG 60.748 66.667 0.00 0.00 37.37 6.13
134 135 2.747855 GAGCCTGAAACAGCGGGG 60.748 66.667 0.00 0.00 34.75 5.73
135 136 3.249189 AGCCTGAAACAGCGGGGA 61.249 61.111 0.00 0.00 34.75 4.81
136 137 2.044946 GCCTGAAACAGCGGGGAT 60.045 61.111 0.00 0.00 34.75 3.85
138 139 1.250840 GCCTGAAACAGCGGGGATTT 61.251 55.000 0.00 0.00 34.75 2.17
141 142 0.965439 TGAAACAGCGGGGATTTTGG 59.035 50.000 0.00 0.00 0.00 3.28
142 143 0.389817 GAAACAGCGGGGATTTTGGC 60.390 55.000 0.00 0.00 0.00 4.52
144 145 0.831711 AACAGCGGGGATTTTGGCTT 60.832 50.000 0.00 0.00 32.46 4.35
146 147 2.125552 GCGGGGATTTTGGCTTGC 60.126 61.111 0.00 0.00 0.00 4.01
147 148 2.941616 GCGGGGATTTTGGCTTGCA 61.942 57.895 0.00 0.00 0.00 4.08
150 151 1.542108 CGGGGATTTTGGCTTGCAAAA 60.542 47.619 0.00 0.00 36.20 2.44
151 152 2.153645 GGGGATTTTGGCTTGCAAAAG 58.846 47.619 0.00 0.00 35.37 2.27
152 153 2.224499 GGGGATTTTGGCTTGCAAAAGA 60.224 45.455 0.00 0.00 35.37 2.52
153 154 3.069289 GGGATTTTGGCTTGCAAAAGAG 58.931 45.455 0.00 0.00 35.37 2.85
154 155 2.481568 GGATTTTGGCTTGCAAAAGAGC 59.518 45.455 0.00 0.00 35.37 4.09
155 156 2.985957 TTTTGGCTTGCAAAAGAGCT 57.014 40.000 7.97 0.00 38.89 4.09
159 160 3.369546 TGGCTTGCAAAAGAGCTTTAC 57.630 42.857 7.97 0.00 38.89 2.01
160 161 2.692557 TGGCTTGCAAAAGAGCTTTACA 59.307 40.909 7.97 0.00 38.89 2.41
161 162 3.243501 TGGCTTGCAAAAGAGCTTTACAG 60.244 43.478 7.97 0.00 38.89 2.74
162 163 3.311966 GCTTGCAAAAGAGCTTTACAGG 58.688 45.455 0.00 0.88 36.01 4.00
163 164 3.243535 GCTTGCAAAAGAGCTTTACAGGT 60.244 43.478 0.00 0.00 36.01 4.00
165 166 5.689383 TTGCAAAAGAGCTTTACAGGTAG 57.311 39.130 0.00 0.00 34.99 3.18
166 167 3.502211 TGCAAAAGAGCTTTACAGGTAGC 59.498 43.478 0.00 0.00 37.66 3.58
172 173 2.821437 AGCTTTACAGGTAGCTGAGGA 58.179 47.619 27.87 10.03 45.55 3.71
173 174 2.763448 AGCTTTACAGGTAGCTGAGGAG 59.237 50.000 27.87 19.78 45.55 3.69
175 176 3.386402 GCTTTACAGGTAGCTGAGGAGAT 59.614 47.826 27.87 7.30 34.57 2.75
176 177 4.500716 GCTTTACAGGTAGCTGAGGAGATC 60.501 50.000 27.87 7.17 34.57 2.75
177 178 2.836636 ACAGGTAGCTGAGGAGATCA 57.163 50.000 27.87 0.00 36.21 2.92
178 179 3.107402 ACAGGTAGCTGAGGAGATCAA 57.893 47.619 27.87 0.00 37.52 2.57
180 181 3.387374 ACAGGTAGCTGAGGAGATCAATG 59.613 47.826 27.87 0.00 37.52 2.82
181 182 3.387374 CAGGTAGCTGAGGAGATCAATGT 59.613 47.826 17.08 0.00 37.52 2.71
182 183 4.586421 CAGGTAGCTGAGGAGATCAATGTA 59.414 45.833 17.08 0.00 37.52 2.29
183 184 4.586841 AGGTAGCTGAGGAGATCAATGTAC 59.413 45.833 0.00 0.00 37.52 2.90
184 185 4.342378 GGTAGCTGAGGAGATCAATGTACA 59.658 45.833 0.00 0.00 37.52 2.90
185 186 4.669206 AGCTGAGGAGATCAATGTACAG 57.331 45.455 0.33 0.00 37.52 2.74
190 191 6.550938 TGAGGAGATCAATGTACAGAATGT 57.449 37.500 0.33 0.00 44.51 2.71
191 192 6.577103 TGAGGAGATCAATGTACAGAATGTC 58.423 40.000 0.33 2.97 42.11 3.06
193 194 8.728216 TGAGGAGATCAATGTACAGAATGTCCA 61.728 40.741 22.43 9.01 42.11 4.02
210 211 3.593442 TCCATTTGGAGTTGGACTGTT 57.407 42.857 0.00 0.00 39.78 3.16
212 213 3.636300 TCCATTTGGAGTTGGACTGTTTG 59.364 43.478 0.00 0.00 39.78 2.93
213 214 3.383761 CATTTGGAGTTGGACTGTTTGC 58.616 45.455 0.00 0.00 0.00 3.68
214 215 1.398692 TTGGAGTTGGACTGTTTGCC 58.601 50.000 0.00 0.00 0.00 4.52
215 216 0.817634 TGGAGTTGGACTGTTTGCCG 60.818 55.000 0.00 0.00 0.00 5.69
216 217 1.515521 GGAGTTGGACTGTTTGCCGG 61.516 60.000 0.00 0.00 0.00 6.13
217 218 0.818040 GAGTTGGACTGTTTGCCGGT 60.818 55.000 1.90 0.00 34.51 5.28
219 220 1.826054 TTGGACTGTTTGCCGGTGG 60.826 57.895 1.90 0.00 30.89 4.61
220 221 2.203294 GGACTGTTTGCCGGTGGT 60.203 61.111 1.90 0.00 30.89 4.16
221 222 2.551912 GGACTGTTTGCCGGTGGTG 61.552 63.158 1.90 0.00 30.89 4.17
222 223 3.194272 GACTGTTTGCCGGTGGTGC 62.194 63.158 1.90 0.00 30.89 5.01
223 224 3.215568 CTGTTTGCCGGTGGTGCA 61.216 61.111 1.90 0.00 36.84 4.57
224 225 2.755876 TGTTTGCCGGTGGTGCAA 60.756 55.556 1.90 0.00 46.30 4.08
228 229 1.829970 TTGCCGGTGGTGCAAATGA 60.830 52.632 1.90 0.00 45.11 2.57
229 230 1.184322 TTGCCGGTGGTGCAAATGAT 61.184 50.000 1.90 0.00 45.11 2.45
230 231 1.139520 GCCGGTGGTGCAAATGATC 59.860 57.895 1.90 0.00 0.00 2.92
231 232 1.594194 GCCGGTGGTGCAAATGATCA 61.594 55.000 1.90 0.00 0.00 2.92
232 233 0.887247 CCGGTGGTGCAAATGATCAA 59.113 50.000 0.00 0.00 0.00 2.57
233 234 1.402720 CCGGTGGTGCAAATGATCAAC 60.403 52.381 0.00 0.00 0.00 3.18
235 236 2.746904 CGGTGGTGCAAATGATCAACTA 59.253 45.455 0.00 0.00 0.00 2.24
236 237 3.181507 CGGTGGTGCAAATGATCAACTAG 60.182 47.826 0.00 0.00 0.00 2.57
237 238 4.009675 GGTGGTGCAAATGATCAACTAGA 58.990 43.478 0.00 0.00 0.00 2.43
238 239 4.458989 GGTGGTGCAAATGATCAACTAGAA 59.541 41.667 0.00 0.00 0.00 2.10
240 241 4.701651 TGGTGCAAATGATCAACTAGAAGG 59.298 41.667 0.00 0.00 0.00 3.46
241 242 4.096984 GGTGCAAATGATCAACTAGAAGGG 59.903 45.833 0.00 0.00 0.00 3.95
242 243 3.696051 TGCAAATGATCAACTAGAAGGGC 59.304 43.478 0.00 0.00 0.00 5.19
243 244 3.696051 GCAAATGATCAACTAGAAGGGCA 59.304 43.478 0.00 0.00 0.00 5.36
244 245 4.340381 GCAAATGATCAACTAGAAGGGCAT 59.660 41.667 0.00 0.00 0.00 4.40
245 246 5.506982 GCAAATGATCAACTAGAAGGGCATC 60.507 44.000 0.00 0.00 0.00 3.91
246 247 5.378230 AATGATCAACTAGAAGGGCATCA 57.622 39.130 0.00 0.00 0.00 3.07
250 251 6.899089 TGATCAACTAGAAGGGCATCAATTA 58.101 36.000 0.00 0.00 0.00 1.40
252 253 8.000709 TGATCAACTAGAAGGGCATCAATTATT 58.999 33.333 0.00 0.00 0.00 1.40
255 256 5.308825 ACTAGAAGGGCATCAATTATTCGG 58.691 41.667 0.00 0.00 0.00 4.30
256 257 4.437682 AGAAGGGCATCAATTATTCGGA 57.562 40.909 0.00 0.00 0.00 4.55
257 258 4.792068 AGAAGGGCATCAATTATTCGGAA 58.208 39.130 0.00 0.00 0.00 4.30
258 259 4.823989 AGAAGGGCATCAATTATTCGGAAG 59.176 41.667 0.00 0.00 0.00 3.46
259 260 2.887152 AGGGCATCAATTATTCGGAAGC 59.113 45.455 0.00 0.00 0.00 3.86
260 261 2.887152 GGGCATCAATTATTCGGAAGCT 59.113 45.455 0.00 0.00 0.00 3.74
261 262 3.304928 GGGCATCAATTATTCGGAAGCTG 60.305 47.826 0.00 0.00 0.00 4.24
262 263 3.304928 GGCATCAATTATTCGGAAGCTGG 60.305 47.826 0.00 0.00 0.00 4.85
263 264 3.565482 GCATCAATTATTCGGAAGCTGGA 59.435 43.478 0.00 0.00 0.00 3.86
264 265 4.555511 GCATCAATTATTCGGAAGCTGGAC 60.556 45.833 0.00 0.00 0.00 4.02
265 266 3.541632 TCAATTATTCGGAAGCTGGACC 58.458 45.455 0.00 0.00 0.00 4.46
266 267 3.054728 TCAATTATTCGGAAGCTGGACCA 60.055 43.478 0.00 0.00 0.00 4.02
267 268 3.864789 ATTATTCGGAAGCTGGACCAT 57.135 42.857 0.00 0.00 0.00 3.55
268 269 2.620251 TATTCGGAAGCTGGACCATG 57.380 50.000 0.00 0.00 0.00 3.66
269 270 0.107017 ATTCGGAAGCTGGACCATGG 60.107 55.000 11.19 11.19 0.00 3.66
270 271 1.198094 TTCGGAAGCTGGACCATGGA 61.198 55.000 21.47 0.00 0.00 3.41
272 273 0.107017 CGGAAGCTGGACCATGGATT 60.107 55.000 21.47 0.00 0.00 3.01
274 275 1.064463 GGAAGCTGGACCATGGATTCA 60.064 52.381 21.47 12.08 0.00 2.57
275 276 2.295885 GAAGCTGGACCATGGATTCAG 58.704 52.381 21.47 21.13 0.00 3.02
276 277 0.549950 AGCTGGACCATGGATTCAGG 59.450 55.000 21.47 4.26 0.00 3.86
278 279 1.064463 GCTGGACCATGGATTCAGGAA 60.064 52.381 21.47 0.00 0.00 3.36
281 282 3.887716 CTGGACCATGGATTCAGGAAATC 59.112 47.826 21.47 0.33 42.68 2.17
282 283 3.269118 TGGACCATGGATTCAGGAAATCA 59.731 43.478 21.47 0.00 44.81 2.57
283 284 4.264307 TGGACCATGGATTCAGGAAATCAA 60.264 41.667 21.47 0.00 44.81 2.57
285 286 5.394553 GGACCATGGATTCAGGAAATCAAAC 60.395 44.000 21.47 0.00 44.81 2.93
286 287 5.085920 ACCATGGATTCAGGAAATCAAACA 58.914 37.500 21.47 0.00 44.81 2.83
287 288 5.186409 ACCATGGATTCAGGAAATCAAACAG 59.814 40.000 21.47 0.00 44.81 3.16
289 290 6.097839 CCATGGATTCAGGAAATCAAACAGAT 59.902 38.462 5.56 0.00 44.81 2.90
290 291 6.519679 TGGATTCAGGAAATCAAACAGATG 57.480 37.500 0.72 0.00 44.81 2.90
291 292 5.105635 TGGATTCAGGAAATCAAACAGATGC 60.106 40.000 0.72 0.00 44.81 3.91
292 293 5.126707 GGATTCAGGAAATCAAACAGATGCT 59.873 40.000 0.72 0.00 44.81 3.79
293 294 5.381174 TTCAGGAAATCAAACAGATGCTG 57.619 39.130 0.00 0.00 36.96 4.41
294 295 3.760151 TCAGGAAATCAAACAGATGCTGG 59.240 43.478 0.00 0.00 36.96 4.85
295 296 2.494870 AGGAAATCAAACAGATGCTGGC 59.505 45.455 0.00 0.00 36.96 4.85
296 297 2.523015 GAAATCAAACAGATGCTGGCG 58.477 47.619 0.00 0.00 36.96 5.69
297 298 1.538047 AATCAAACAGATGCTGGCGT 58.462 45.000 0.00 0.00 36.96 5.68
298 299 1.538047 ATCAAACAGATGCTGGCGTT 58.462 45.000 0.00 0.00 35.06 4.84
299 300 0.592637 TCAAACAGATGCTGGCGTTG 59.407 50.000 0.00 0.00 35.51 4.10
300 301 0.592637 CAAACAGATGCTGGCGTTGA 59.407 50.000 0.00 0.00 35.51 3.18
301 302 1.001487 CAAACAGATGCTGGCGTTGAA 60.001 47.619 0.00 0.00 35.51 2.69
302 303 0.877071 AACAGATGCTGGCGTTGAAG 59.123 50.000 0.00 0.00 35.51 3.02
306 307 1.741706 AGATGCTGGCGTTGAAGAATG 59.258 47.619 0.00 0.00 0.00 2.67
308 309 0.874390 TGCTGGCGTTGAAGAATGAC 59.126 50.000 0.00 0.00 0.00 3.06
309 310 1.160137 GCTGGCGTTGAAGAATGACT 58.840 50.000 0.00 0.00 0.00 3.41
310 311 2.289382 TGCTGGCGTTGAAGAATGACTA 60.289 45.455 0.00 0.00 0.00 2.59
311 312 2.094417 GCTGGCGTTGAAGAATGACTAC 59.906 50.000 0.00 0.00 0.00 2.73
313 314 3.734463 TGGCGTTGAAGAATGACTACAA 58.266 40.909 0.00 0.00 0.00 2.41
314 315 4.130857 TGGCGTTGAAGAATGACTACAAA 58.869 39.130 0.00 0.00 0.00 2.83
315 316 4.213270 TGGCGTTGAAGAATGACTACAAAG 59.787 41.667 0.00 0.00 0.00 2.77
318 319 5.050363 GCGTTGAAGAATGACTACAAAGTGA 60.050 40.000 0.00 0.00 35.56 3.41
319 320 6.355638 CGTTGAAGAATGACTACAAAGTGAC 58.644 40.000 0.00 0.00 35.56 3.67
320 321 6.355638 GTTGAAGAATGACTACAAAGTGACG 58.644 40.000 0.00 0.00 35.56 4.35
322 323 5.462068 TGAAGAATGACTACAAAGTGACGTG 59.538 40.000 0.00 0.00 35.56 4.49
323 324 4.307432 AGAATGACTACAAAGTGACGTGG 58.693 43.478 0.00 0.00 35.56 4.94
324 325 2.519377 TGACTACAAAGTGACGTGGG 57.481 50.000 0.00 0.00 35.56 4.61
325 326 1.758280 TGACTACAAAGTGACGTGGGT 59.242 47.619 0.00 0.00 35.56 4.51
326 327 2.132762 GACTACAAAGTGACGTGGGTG 58.867 52.381 0.00 0.00 35.56 4.61
327 328 1.758280 ACTACAAAGTGACGTGGGTGA 59.242 47.619 0.00 0.00 33.57 4.02
328 329 2.168936 ACTACAAAGTGACGTGGGTGAA 59.831 45.455 0.00 0.00 33.57 3.18
329 330 2.116827 ACAAAGTGACGTGGGTGAAA 57.883 45.000 0.00 0.00 0.00 2.69
330 331 1.741145 ACAAAGTGACGTGGGTGAAAC 59.259 47.619 0.00 0.00 0.00 2.78
342 343 3.668641 GTGAAACGCACCGGTAATG 57.331 52.632 6.87 1.89 41.78 1.90
343 344 0.869730 GTGAAACGCACCGGTAATGT 59.130 50.000 6.87 2.67 41.78 2.71
345 346 1.264557 TGAAACGCACCGGTAATGTTG 59.735 47.619 6.87 0.00 0.00 3.33
346 347 0.039888 AAACGCACCGGTAATGTTGC 60.040 50.000 6.87 4.21 0.00 4.17
347 348 1.858372 AACGCACCGGTAATGTTGCC 61.858 55.000 6.87 0.00 0.00 4.52
354 355 2.018544 GGTAATGTTGCCGCGCATA 58.981 52.632 8.75 0.00 38.76 3.14
356 357 1.202200 GGTAATGTTGCCGCGCATAAA 60.202 47.619 8.75 0.00 38.76 1.40
357 358 2.542824 GGTAATGTTGCCGCGCATAAAT 60.543 45.455 8.75 0.00 38.76 1.40
358 359 2.292103 AATGTTGCCGCGCATAAATT 57.708 40.000 8.75 0.90 38.76 1.82
359 360 3.428746 AATGTTGCCGCGCATAAATTA 57.571 38.095 8.75 0.00 38.76 1.40
360 361 2.466870 TGTTGCCGCGCATAAATTAG 57.533 45.000 8.75 0.00 38.76 1.73
362 363 0.735471 TTGCCGCGCATAAATTAGCA 59.265 45.000 8.75 0.00 38.76 3.49
363 364 0.735471 TGCCGCGCATAAATTAGCAA 59.265 45.000 8.75 0.00 31.71 3.91
365 366 2.189342 GCCGCGCATAAATTAGCAAAA 58.811 42.857 8.75 0.00 0.00 2.44
366 367 2.216263 GCCGCGCATAAATTAGCAAAAG 59.784 45.455 8.75 0.00 0.00 2.27
368 369 4.593157 CCGCGCATAAATTAGCAAAAGTA 58.407 39.130 8.75 0.00 0.00 2.24
370 371 4.670621 CGCGCATAAATTAGCAAAAGTAGG 59.329 41.667 8.75 0.00 0.00 3.18
371 372 4.976116 GCGCATAAATTAGCAAAAGTAGGG 59.024 41.667 0.30 0.00 0.00 3.53
372 373 5.519722 CGCATAAATTAGCAAAAGTAGGGG 58.480 41.667 0.00 0.00 0.00 4.79
374 375 6.261381 CGCATAAATTAGCAAAAGTAGGGGTA 59.739 38.462 0.00 0.00 0.00 3.69
375 376 7.519970 CGCATAAATTAGCAAAAGTAGGGGTAG 60.520 40.741 0.00 0.00 0.00 3.18
377 378 5.791303 AATTAGCAAAAGTAGGGGTAGGT 57.209 39.130 0.00 0.00 0.00 3.08
378 379 4.563140 TTAGCAAAAGTAGGGGTAGGTG 57.437 45.455 0.00 0.00 0.00 4.00
379 380 2.627933 AGCAAAAGTAGGGGTAGGTGA 58.372 47.619 0.00 0.00 0.00 4.02
380 381 3.190439 AGCAAAAGTAGGGGTAGGTGAT 58.810 45.455 0.00 0.00 0.00 3.06
382 383 3.054655 GCAAAAGTAGGGGTAGGTGATGA 60.055 47.826 0.00 0.00 0.00 2.92
383 384 4.566907 GCAAAAGTAGGGGTAGGTGATGAA 60.567 45.833 0.00 0.00 0.00 2.57
384 385 5.755849 CAAAAGTAGGGGTAGGTGATGAAT 58.244 41.667 0.00 0.00 0.00 2.57
385 386 6.187682 CAAAAGTAGGGGTAGGTGATGAATT 58.812 40.000 0.00 0.00 0.00 2.17
386 387 5.373812 AAGTAGGGGTAGGTGATGAATTG 57.626 43.478 0.00 0.00 0.00 2.32
387 388 4.371681 AGTAGGGGTAGGTGATGAATTGT 58.628 43.478 0.00 0.00 0.00 2.71
388 389 3.652057 AGGGGTAGGTGATGAATTGTG 57.348 47.619 0.00 0.00 0.00 3.33
389 390 2.919602 AGGGGTAGGTGATGAATTGTGT 59.080 45.455 0.00 0.00 0.00 3.72
392 393 4.881850 GGGGTAGGTGATGAATTGTGTAAG 59.118 45.833 0.00 0.00 0.00 2.34
393 394 4.881850 GGGTAGGTGATGAATTGTGTAAGG 59.118 45.833 0.00 0.00 0.00 2.69
394 395 5.497474 GGTAGGTGATGAATTGTGTAAGGT 58.503 41.667 0.00 0.00 0.00 3.50
395 396 5.944007 GGTAGGTGATGAATTGTGTAAGGTT 59.056 40.000 0.00 0.00 0.00 3.50
396 397 7.107542 GGTAGGTGATGAATTGTGTAAGGTTA 58.892 38.462 0.00 0.00 0.00 2.85
397 398 7.773690 GGTAGGTGATGAATTGTGTAAGGTTAT 59.226 37.037 0.00 0.00 0.00 1.89
399 400 7.175104 AGGTGATGAATTGTGTAAGGTTATGT 58.825 34.615 0.00 0.00 0.00 2.29
400 401 7.669722 AGGTGATGAATTGTGTAAGGTTATGTT 59.330 33.333 0.00 0.00 0.00 2.71
401 402 7.754924 GGTGATGAATTGTGTAAGGTTATGTTG 59.245 37.037 0.00 0.00 0.00 3.33
402 403 7.754924 GTGATGAATTGTGTAAGGTTATGTTGG 59.245 37.037 0.00 0.00 0.00 3.77
405 406 3.443145 TGTGTAAGGTTATGTTGGGGG 57.557 47.619 0.00 0.00 0.00 5.40
406 407 2.717515 TGTGTAAGGTTATGTTGGGGGT 59.282 45.455 0.00 0.00 0.00 4.95
407 408 3.140519 TGTGTAAGGTTATGTTGGGGGTT 59.859 43.478 0.00 0.00 0.00 4.11
408 409 3.760151 GTGTAAGGTTATGTTGGGGGTTC 59.240 47.826 0.00 0.00 0.00 3.62
409 410 2.615986 AAGGTTATGTTGGGGGTTCC 57.384 50.000 0.00 0.00 0.00 3.62
423 424 0.251787 GGTTCCCCCAGACTGCATTT 60.252 55.000 0.00 0.00 0.00 2.32
424 425 1.632589 GTTCCCCCAGACTGCATTTT 58.367 50.000 0.00 0.00 0.00 1.82
425 426 1.273327 GTTCCCCCAGACTGCATTTTG 59.727 52.381 0.00 0.00 0.00 2.44
426 427 0.251742 TCCCCCAGACTGCATTTTGG 60.252 55.000 6.64 6.64 0.00 3.28
427 428 0.251742 CCCCCAGACTGCATTTTGGA 60.252 55.000 14.46 0.00 32.34 3.53
428 429 1.620524 CCCCCAGACTGCATTTTGGAT 60.621 52.381 14.46 0.00 32.34 3.41
431 432 3.355378 CCCAGACTGCATTTTGGATGTA 58.645 45.455 14.46 0.00 32.34 2.29
432 433 3.763360 CCCAGACTGCATTTTGGATGTAA 59.237 43.478 14.46 0.00 32.34 2.41
433 434 4.403432 CCCAGACTGCATTTTGGATGTAAT 59.597 41.667 14.46 0.00 32.34 1.89
434 435 5.105228 CCCAGACTGCATTTTGGATGTAATT 60.105 40.000 14.46 0.00 32.34 1.40
435 436 6.400568 CCAGACTGCATTTTGGATGTAATTT 58.599 36.000 7.80 0.00 32.34 1.82
436 437 6.875195 CCAGACTGCATTTTGGATGTAATTTT 59.125 34.615 7.80 0.00 32.34 1.82
437 438 7.148540 CCAGACTGCATTTTGGATGTAATTTTG 60.149 37.037 7.80 0.00 32.34 2.44
438 439 6.875195 AGACTGCATTTTGGATGTAATTTTGG 59.125 34.615 0.00 0.00 0.00 3.28
439 440 6.767456 ACTGCATTTTGGATGTAATTTTGGA 58.233 32.000 0.00 0.00 0.00 3.53
440 441 7.396418 ACTGCATTTTGGATGTAATTTTGGAT 58.604 30.769 0.00 0.00 0.00 3.41
441 442 7.334921 ACTGCATTTTGGATGTAATTTTGGATG 59.665 33.333 0.00 0.00 0.00 3.51
443 444 7.333921 TGCATTTTGGATGTAATTTTGGATGAC 59.666 33.333 0.00 0.00 0.00 3.06
446 447 9.962809 ATTTTGGATGTAATTTTGGATGACATT 57.037 25.926 0.00 0.00 31.03 2.71
447 448 9.434420 TTTTGGATGTAATTTTGGATGACATTC 57.566 29.630 0.00 0.00 31.03 2.67
449 450 6.183360 TGGATGTAATTTTGGATGACATTCCG 60.183 38.462 0.00 0.00 38.74 4.30
451 452 6.435430 TGTAATTTTGGATGACATTCCGAG 57.565 37.500 0.00 0.00 38.74 4.63
454 455 3.904800 TTTGGATGACATTCCGAGCTA 57.095 42.857 0.00 0.00 38.74 3.32
455 456 2.890808 TGGATGACATTCCGAGCTAC 57.109 50.000 0.00 0.00 38.74 3.58
457 458 2.159099 TGGATGACATTCCGAGCTACAC 60.159 50.000 0.00 0.00 38.74 2.90
458 459 2.101582 GGATGACATTCCGAGCTACACT 59.898 50.000 0.00 0.00 0.00 3.55
460 461 4.202121 GGATGACATTCCGAGCTACACTTA 60.202 45.833 0.00 0.00 0.00 2.24
461 462 4.106029 TGACATTCCGAGCTACACTTAC 57.894 45.455 0.00 0.00 0.00 2.34
462 463 3.762288 TGACATTCCGAGCTACACTTACT 59.238 43.478 0.00 0.00 0.00 2.24
464 465 5.416639 TGACATTCCGAGCTACACTTACTTA 59.583 40.000 0.00 0.00 0.00 2.24
466 467 6.694447 ACATTCCGAGCTACACTTACTTAAA 58.306 36.000 0.00 0.00 0.00 1.52
468 469 8.472413 ACATTCCGAGCTACACTTACTTAAATA 58.528 33.333 0.00 0.00 0.00 1.40
469 470 9.309516 CATTCCGAGCTACACTTACTTAAATAA 57.690 33.333 0.00 0.00 0.00 1.40
470 471 9.880157 ATTCCGAGCTACACTTACTTAAATAAA 57.120 29.630 0.00 0.00 0.00 1.40
471 472 9.709495 TTCCGAGCTACACTTACTTAAATAAAA 57.291 29.630 0.00 0.00 0.00 1.52
472 473 9.362539 TCCGAGCTACACTTACTTAAATAAAAG 57.637 33.333 0.00 0.00 0.00 2.27
473 474 8.114905 CCGAGCTACACTTACTTAAATAAAAGC 58.885 37.037 0.00 0.00 0.00 3.51
474 475 7.839837 CGAGCTACACTTACTTAAATAAAAGCG 59.160 37.037 0.00 0.00 0.00 4.68
475 476 7.971455 AGCTACACTTACTTAAATAAAAGCGG 58.029 34.615 0.00 0.00 0.00 5.52
476 477 6.685828 GCTACACTTACTTAAATAAAAGCGGC 59.314 38.462 0.00 0.00 0.00 6.53
477 478 6.563222 ACACTTACTTAAATAAAAGCGGCA 57.437 33.333 1.45 0.00 0.00 5.69
478 479 6.972722 ACACTTACTTAAATAAAAGCGGCAA 58.027 32.000 1.45 0.00 0.00 4.52
479 480 6.859508 ACACTTACTTAAATAAAAGCGGCAAC 59.140 34.615 1.45 0.00 0.00 4.17
480 481 6.307077 CACTTACTTAAATAAAAGCGGCAACC 59.693 38.462 1.45 0.00 0.00 3.77
483 484 5.849510 ACTTAAATAAAAGCGGCAACCTTT 58.150 33.333 1.45 0.00 38.29 3.11
484 485 5.924254 ACTTAAATAAAAGCGGCAACCTTTC 59.076 36.000 1.45 0.00 36.47 2.62
485 486 3.313012 AATAAAAGCGGCAACCTTTCC 57.687 42.857 1.45 0.00 36.47 3.13
486 487 0.963225 TAAAAGCGGCAACCTTTCCC 59.037 50.000 1.45 0.00 36.47 3.97
487 488 1.754380 AAAAGCGGCAACCTTTCCCC 61.754 55.000 1.45 0.00 36.47 4.81
488 489 2.656698 AAAGCGGCAACCTTTCCCCT 62.657 55.000 1.45 0.00 33.54 4.79
489 490 3.062466 GCGGCAACCTTTCCCCTC 61.062 66.667 0.00 0.00 0.00 4.30
490 491 2.434331 CGGCAACCTTTCCCCTCA 59.566 61.111 0.00 0.00 0.00 3.86
491 492 1.228429 CGGCAACCTTTCCCCTCAA 60.228 57.895 0.00 0.00 0.00 3.02
492 493 0.825840 CGGCAACCTTTCCCCTCAAA 60.826 55.000 0.00 0.00 0.00 2.69
493 494 1.419381 GGCAACCTTTCCCCTCAAAA 58.581 50.000 0.00 0.00 0.00 2.44
494 495 1.765904 GGCAACCTTTCCCCTCAAAAA 59.234 47.619 0.00 0.00 0.00 1.94
610 612 2.697761 CGAAGAGAAGGCCGACCGA 61.698 63.158 0.00 0.00 42.76 4.69
686 688 6.503589 TGCAAACTTGTACAACAGTTTACT 57.496 33.333 20.10 2.40 32.12 2.24
824 2352 7.609532 AGCCTATAATTCATGGAGTTTATCAGC 59.390 37.037 0.00 0.00 0.00 4.26
889 2791 6.061022 TGGATGATAAGAGTTTGTTGGCTA 57.939 37.500 0.00 0.00 0.00 3.93
957 2859 3.356529 AGACATTGATGGACCAGAACC 57.643 47.619 0.00 0.00 0.00 3.62
1037 3796 7.394077 TGATATTCTTGAGGTTTTGATGAAGCA 59.606 33.333 0.00 0.00 0.00 3.91
1141 5521 8.373256 GCTTTTCTAAACTCAAGTTGTTGAAAC 58.627 33.333 2.11 0.00 42.27 2.78
1143 5523 6.114221 TCTAAACTCAAGTTGTTGAAACCG 57.886 37.500 2.11 0.00 42.27 4.44
1176 5556 7.061210 CGTTCTACTATGACACAAGAAAGACTG 59.939 40.741 0.00 0.00 30.37 3.51
1326 5720 9.787532 TTTAGTATTTTGCATTGATACTTGAGC 57.212 29.630 17.11 0.00 37.65 4.26
1393 5787 6.446781 AATGAAGTGATTATGCCTGAGTTG 57.553 37.500 0.00 0.00 0.00 3.16
1524 5933 2.337879 TTTCACCTCCAAGCGCTGGT 62.338 55.000 12.58 11.72 46.51 4.00
1641 6050 0.108615 CATTCCTCCGACGAACAGCT 60.109 55.000 0.00 0.00 0.00 4.24
1748 6158 3.733024 CATGAATTTGGTGCATGTTGC 57.267 42.857 0.00 0.00 45.29 4.17
1754 6164 3.808466 TTTGGTGCATGTTGCTTGTAA 57.192 38.095 0.00 0.00 45.31 2.41
1839 6249 8.977267 AGAAGAATTTGATATTGAAGAGGAGG 57.023 34.615 0.00 0.00 0.00 4.30
1840 6250 8.776119 AGAAGAATTTGATATTGAAGAGGAGGA 58.224 33.333 0.00 0.00 0.00 3.71
1910 6323 0.108520 GCGGTTCAGTTATGGGTCGA 60.109 55.000 0.00 0.00 0.00 4.20
1952 6366 1.198867 TCGATGCCGACAACAAATTGG 59.801 47.619 0.00 0.00 40.30 3.16
1957 6371 1.336755 GCCGACAACAAATTGGTGAGT 59.663 47.619 18.86 0.00 37.20 3.41
2005 6419 2.101770 GAGTCGTACTTCCGGCGG 59.898 66.667 22.51 22.51 37.56 6.13
2008 6422 2.985282 TCGTACTTCCGGCGGTGT 60.985 61.111 27.32 25.57 0.00 4.16
2042 6456 0.238289 CGAGTTGTTCAGGCGCATTT 59.762 50.000 10.83 0.00 0.00 2.32
2112 6528 4.598894 CCGGAGAGCTCGGGCATG 62.599 72.222 11.40 0.00 41.99 4.06
2256 6675 3.130340 AGTCGGAATTGTGCAAGTGTTTT 59.870 39.130 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.592533 CCTTTATTAACCGCATCATCAGAATTG 59.407 37.037 0.00 0.00 0.00 2.32
3 4 7.502226 TCCTTTATTAACCGCATCATCAGAATT 59.498 33.333 0.00 0.00 0.00 2.17
4 5 6.998074 TCCTTTATTAACCGCATCATCAGAAT 59.002 34.615 0.00 0.00 0.00 2.40
5 6 6.353323 TCCTTTATTAACCGCATCATCAGAA 58.647 36.000 0.00 0.00 0.00 3.02
7 8 5.180117 CCTCCTTTATTAACCGCATCATCAG 59.820 44.000 0.00 0.00 0.00 2.90
8 9 5.063204 CCTCCTTTATTAACCGCATCATCA 58.937 41.667 0.00 0.00 0.00 3.07
9 10 4.455877 CCCTCCTTTATTAACCGCATCATC 59.544 45.833 0.00 0.00 0.00 2.92
10 11 4.104102 TCCCTCCTTTATTAACCGCATCAT 59.896 41.667 0.00 0.00 0.00 2.45
11 12 3.456644 TCCCTCCTTTATTAACCGCATCA 59.543 43.478 0.00 0.00 0.00 3.07
12 13 4.065789 CTCCCTCCTTTATTAACCGCATC 58.934 47.826 0.00 0.00 0.00 3.91
13 14 3.458487 ACTCCCTCCTTTATTAACCGCAT 59.542 43.478 0.00 0.00 0.00 4.73
15 16 3.555527 ACTCCCTCCTTTATTAACCGC 57.444 47.619 0.00 0.00 0.00 5.68
17 18 5.132312 AGCCTTACTCCCTCCTTTATTAACC 59.868 44.000 0.00 0.00 0.00 2.85
20 21 6.553852 CACTAGCCTTACTCCCTCCTTTATTA 59.446 42.308 0.00 0.00 0.00 0.98
22 23 4.902448 CACTAGCCTTACTCCCTCCTTTAT 59.098 45.833 0.00 0.00 0.00 1.40
24 25 3.108376 CACTAGCCTTACTCCCTCCTTT 58.892 50.000 0.00 0.00 0.00 3.11
25 26 2.627217 CCACTAGCCTTACTCCCTCCTT 60.627 54.545 0.00 0.00 0.00 3.36
26 27 1.062810 CCACTAGCCTTACTCCCTCCT 60.063 57.143 0.00 0.00 0.00 3.69
28 29 1.757699 CACCACTAGCCTTACTCCCTC 59.242 57.143 0.00 0.00 0.00 4.30
30 31 0.831307 CCACCACTAGCCTTACTCCC 59.169 60.000 0.00 0.00 0.00 4.30
31 32 1.757699 CTCCACCACTAGCCTTACTCC 59.242 57.143 0.00 0.00 0.00 3.85
32 33 1.137282 GCTCCACCACTAGCCTTACTC 59.863 57.143 0.00 0.00 32.40 2.59
33 34 1.196012 GCTCCACCACTAGCCTTACT 58.804 55.000 0.00 0.00 32.40 2.24
34 35 0.179108 CGCTCCACCACTAGCCTTAC 60.179 60.000 0.00 0.00 35.22 2.34
35 36 1.327690 CCGCTCCACCACTAGCCTTA 61.328 60.000 0.00 0.00 35.22 2.69
36 37 2.660064 CCGCTCCACCACTAGCCTT 61.660 63.158 0.00 0.00 35.22 4.35
38 39 3.391382 ACCGCTCCACCACTAGCC 61.391 66.667 0.00 0.00 35.22 3.93
39 40 2.125512 CACCGCTCCACCACTAGC 60.126 66.667 0.00 0.00 35.33 3.42
40 41 2.125512 GCACCGCTCCACCACTAG 60.126 66.667 0.00 0.00 0.00 2.57
41 42 2.167398 GAAGCACCGCTCCACCACTA 62.167 60.000 0.00 0.00 38.25 2.74
44 45 4.680237 CGAAGCACCGCTCCACCA 62.680 66.667 0.00 0.00 38.25 4.17
51 52 2.862674 TTATGGTCCCGAAGCACCGC 62.863 60.000 0.00 0.00 38.41 5.68
52 53 0.179056 ATTATGGTCCCGAAGCACCG 60.179 55.000 0.00 0.00 38.41 4.94
53 54 1.308998 CATTATGGTCCCGAAGCACC 58.691 55.000 0.00 0.00 38.41 5.01
54 55 1.308998 CCATTATGGTCCCGAAGCAC 58.691 55.000 2.48 0.00 38.41 4.40
56 57 0.537371 CCCCATTATGGTCCCGAAGC 60.537 60.000 10.65 0.00 35.17 3.86
57 58 0.537371 GCCCCATTATGGTCCCGAAG 60.537 60.000 10.65 0.00 35.17 3.79
58 59 1.282653 TGCCCCATTATGGTCCCGAA 61.283 55.000 10.65 0.00 35.17 4.30
59 60 1.065410 ATGCCCCATTATGGTCCCGA 61.065 55.000 10.65 0.00 35.17 5.14
60 61 0.178964 AATGCCCCATTATGGTCCCG 60.179 55.000 10.65 0.00 35.17 5.14
61 62 1.970640 GAAATGCCCCATTATGGTCCC 59.029 52.381 10.65 0.00 35.17 4.46
63 64 2.629617 CCAGAAATGCCCCATTATGGTC 59.370 50.000 10.65 2.36 36.71 4.02
64 65 2.681422 CCAGAAATGCCCCATTATGGT 58.319 47.619 10.65 0.00 36.71 3.55
65 66 1.345415 GCCAGAAATGCCCCATTATGG 59.655 52.381 3.85 3.85 40.63 2.74
66 67 1.345415 GGCCAGAAATGCCCCATTATG 59.655 52.381 0.00 0.00 43.33 1.90
68 69 0.754957 CGGCCAGAAATGCCCCATTA 60.755 55.000 2.24 0.00 46.48 1.90
69 70 2.059786 CGGCCAGAAATGCCCCATT 61.060 57.895 2.24 0.00 46.48 3.16
70 71 2.442643 CGGCCAGAAATGCCCCAT 60.443 61.111 2.24 0.00 46.48 4.00
71 72 4.757355 CCGGCCAGAAATGCCCCA 62.757 66.667 2.24 0.00 46.48 4.96
72 73 4.440829 TCCGGCCAGAAATGCCCC 62.441 66.667 2.24 0.00 46.48 5.80
73 74 2.830370 CTCCGGCCAGAAATGCCC 60.830 66.667 2.24 0.00 46.48 5.36
74 75 2.044946 ACTCCGGCCAGAAATGCC 60.045 61.111 2.24 0.00 45.70 4.40
75 76 1.675641 ACACTCCGGCCAGAAATGC 60.676 57.895 2.24 0.00 0.00 3.56
76 77 1.926511 GCACACTCCGGCCAGAAATG 61.927 60.000 2.24 0.46 0.00 2.32
78 79 2.281484 GCACACTCCGGCCAGAAA 60.281 61.111 2.24 0.00 0.00 2.52
92 93 3.598019 ATGTGTGGAAAATGATGGCAC 57.402 42.857 0.00 0.00 0.00 5.01
93 94 3.324268 ACAATGTGTGGAAAATGATGGCA 59.676 39.130 0.00 0.00 0.00 4.92
94 95 3.680937 CACAATGTGTGGAAAATGATGGC 59.319 43.478 5.00 0.00 44.27 4.40
107 108 1.956477 GTTTCAGGCTCCACAATGTGT 59.044 47.619 12.79 0.00 0.00 3.72
108 109 1.955778 TGTTTCAGGCTCCACAATGTG 59.044 47.619 6.37 6.37 0.00 3.21
109 110 2.233271 CTGTTTCAGGCTCCACAATGT 58.767 47.619 0.00 0.00 0.00 2.71
111 112 1.251251 GCTGTTTCAGGCTCCACAAT 58.749 50.000 0.00 0.00 31.21 2.71
113 114 1.597854 CGCTGTTTCAGGCTCCACA 60.598 57.895 0.00 0.00 31.21 4.17
115 116 2.032528 CCGCTGTTTCAGGCTCCA 59.967 61.111 0.00 0.00 31.21 3.86
117 118 2.543067 ATCCCCGCTGTTTCAGGCTC 62.543 60.000 0.00 0.00 31.21 4.70
119 120 1.250840 AAATCCCCGCTGTTTCAGGC 61.251 55.000 0.00 0.00 31.21 4.85
121 122 1.067635 CCAAAATCCCCGCTGTTTCAG 60.068 52.381 0.00 0.00 34.12 3.02
122 123 0.965439 CCAAAATCCCCGCTGTTTCA 59.035 50.000 0.00 0.00 0.00 2.69
124 125 0.831711 AGCCAAAATCCCCGCTGTTT 60.832 50.000 0.00 0.00 0.00 2.83
126 127 1.228862 AAGCCAAAATCCCCGCTGT 60.229 52.632 0.00 0.00 0.00 4.40
127 128 1.216178 CAAGCCAAAATCCCCGCTG 59.784 57.895 0.00 0.00 0.00 5.18
128 129 2.649129 GCAAGCCAAAATCCCCGCT 61.649 57.895 0.00 0.00 0.00 5.52
130 131 0.034616 TTTGCAAGCCAAAATCCCCG 59.965 50.000 0.00 0.00 40.32 5.73
131 132 2.268762 TTTTGCAAGCCAAAATCCCC 57.731 45.000 0.00 0.00 45.75 4.81
138 139 2.985957 AAAGCTCTTTTGCAAGCCAA 57.014 40.000 4.49 0.00 39.39 4.52
141 142 3.243535 ACCTGTAAAGCTCTTTTGCAAGC 60.244 43.478 0.00 0.00 40.22 4.01
142 143 4.574599 ACCTGTAAAGCTCTTTTGCAAG 57.425 40.909 0.00 0.00 40.22 4.01
144 145 3.502211 GCTACCTGTAAAGCTCTTTTGCA 59.498 43.478 0.00 0.00 38.77 4.08
146 147 4.997395 TCAGCTACCTGTAAAGCTCTTTTG 59.003 41.667 0.00 0.00 45.92 2.44
147 148 5.228945 TCAGCTACCTGTAAAGCTCTTTT 57.771 39.130 0.00 0.00 45.92 2.27
150 151 2.763448 CCTCAGCTACCTGTAAAGCTCT 59.237 50.000 0.00 0.00 45.92 4.09
151 152 2.761208 TCCTCAGCTACCTGTAAAGCTC 59.239 50.000 0.00 0.00 45.92 4.09
153 154 2.761208 TCTCCTCAGCTACCTGTAAAGC 59.239 50.000 0.00 0.00 40.09 3.51
154 155 4.646945 TGATCTCCTCAGCTACCTGTAAAG 59.353 45.833 0.00 0.00 40.09 1.85
155 156 4.610333 TGATCTCCTCAGCTACCTGTAAA 58.390 43.478 0.00 0.00 40.09 2.01
159 160 3.387374 ACATTGATCTCCTCAGCTACCTG 59.613 47.826 0.00 0.00 40.54 4.00
160 161 3.652055 ACATTGATCTCCTCAGCTACCT 58.348 45.455 0.00 0.00 34.68 3.08
161 162 4.342378 TGTACATTGATCTCCTCAGCTACC 59.658 45.833 0.00 0.00 34.68 3.18
162 163 5.300539 TCTGTACATTGATCTCCTCAGCTAC 59.699 44.000 0.00 0.00 34.68 3.58
163 164 5.449553 TCTGTACATTGATCTCCTCAGCTA 58.550 41.667 0.00 0.00 34.68 3.32
165 166 4.662468 TCTGTACATTGATCTCCTCAGC 57.338 45.455 0.00 0.00 34.68 4.26
166 167 6.580788 ACATTCTGTACATTGATCTCCTCAG 58.419 40.000 0.00 0.00 34.68 3.35
168 169 5.988561 GGACATTCTGTACATTGATCTCCTC 59.011 44.000 0.00 0.00 29.61 3.71
170 171 5.674525 TGGACATTCTGTACATTGATCTCC 58.325 41.667 0.00 0.00 36.02 3.71
180 181 5.106157 CCAACTCCAAATGGACATTCTGTAC 60.106 44.000 0.00 0.00 39.78 2.90
181 182 5.009631 CCAACTCCAAATGGACATTCTGTA 58.990 41.667 0.00 0.00 39.78 2.74
182 183 3.828451 CCAACTCCAAATGGACATTCTGT 59.172 43.478 0.00 0.00 39.78 3.41
183 184 4.081406 TCCAACTCCAAATGGACATTCTG 58.919 43.478 0.00 0.37 40.74 3.02
184 185 4.387026 TCCAACTCCAAATGGACATTCT 57.613 40.909 0.00 0.00 40.74 2.40
190 191 3.593442 AACAGTCCAACTCCAAATGGA 57.407 42.857 1.53 1.53 43.32 3.41
191 192 3.799917 GCAAACAGTCCAACTCCAAATGG 60.800 47.826 0.00 0.00 38.09 3.16
193 194 2.365293 GGCAAACAGTCCAACTCCAAAT 59.635 45.455 0.00 0.00 0.00 2.32
194 195 1.754226 GGCAAACAGTCCAACTCCAAA 59.246 47.619 0.00 0.00 0.00 3.28
195 196 1.398692 GGCAAACAGTCCAACTCCAA 58.601 50.000 0.00 0.00 0.00 3.53
196 197 0.817634 CGGCAAACAGTCCAACTCCA 60.818 55.000 0.00 0.00 0.00 3.86
198 199 0.818040 ACCGGCAAACAGTCCAACTC 60.818 55.000 0.00 0.00 0.00 3.01
199 200 1.101049 CACCGGCAAACAGTCCAACT 61.101 55.000 0.00 0.00 0.00 3.16
201 202 1.826054 CCACCGGCAAACAGTCCAA 60.826 57.895 0.00 0.00 0.00 3.53
202 203 2.203280 CCACCGGCAAACAGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
203 204 2.203294 ACCACCGGCAAACAGTCC 60.203 61.111 0.00 0.00 0.00 3.85
212 213 1.139520 GATCATTTGCACCACCGGC 59.860 57.895 0.00 0.00 0.00 6.13
213 214 0.887247 TTGATCATTTGCACCACCGG 59.113 50.000 0.00 0.00 0.00 5.28
214 215 1.541147 AGTTGATCATTTGCACCACCG 59.459 47.619 0.00 0.00 0.00 4.94
215 216 4.009675 TCTAGTTGATCATTTGCACCACC 58.990 43.478 0.00 0.00 0.00 4.61
216 217 5.392380 CCTTCTAGTTGATCATTTGCACCAC 60.392 44.000 0.00 0.00 0.00 4.16
217 218 4.701651 CCTTCTAGTTGATCATTTGCACCA 59.298 41.667 0.00 0.00 0.00 4.17
219 220 4.439289 GCCCTTCTAGTTGATCATTTGCAC 60.439 45.833 0.00 0.00 0.00 4.57
220 221 3.696051 GCCCTTCTAGTTGATCATTTGCA 59.304 43.478 0.00 0.00 0.00 4.08
221 222 3.696051 TGCCCTTCTAGTTGATCATTTGC 59.304 43.478 0.00 0.00 0.00 3.68
222 223 5.591472 TGATGCCCTTCTAGTTGATCATTTG 59.409 40.000 0.00 0.00 0.00 2.32
223 224 5.759059 TGATGCCCTTCTAGTTGATCATTT 58.241 37.500 0.00 0.00 0.00 2.32
224 225 5.378230 TGATGCCCTTCTAGTTGATCATT 57.622 39.130 0.00 0.00 0.00 2.57
226 227 4.842531 TTGATGCCCTTCTAGTTGATCA 57.157 40.909 0.00 0.00 0.00 2.92
228 229 7.173907 CGAATAATTGATGCCCTTCTAGTTGAT 59.826 37.037 0.00 0.00 0.00 2.57
229 230 6.483307 CGAATAATTGATGCCCTTCTAGTTGA 59.517 38.462 0.00 0.00 0.00 3.18
230 231 6.293626 CCGAATAATTGATGCCCTTCTAGTTG 60.294 42.308 0.00 0.00 0.00 3.16
231 232 5.765182 CCGAATAATTGATGCCCTTCTAGTT 59.235 40.000 0.00 0.00 0.00 2.24
232 233 5.071788 TCCGAATAATTGATGCCCTTCTAGT 59.928 40.000 0.00 0.00 0.00 2.57
233 234 5.551233 TCCGAATAATTGATGCCCTTCTAG 58.449 41.667 0.00 0.00 0.00 2.43
235 236 4.437682 TCCGAATAATTGATGCCCTTCT 57.562 40.909 0.00 0.00 0.00 2.85
236 237 4.557496 GCTTCCGAATAATTGATGCCCTTC 60.557 45.833 0.00 0.00 0.00 3.46
237 238 3.319122 GCTTCCGAATAATTGATGCCCTT 59.681 43.478 0.00 0.00 0.00 3.95
238 239 2.887152 GCTTCCGAATAATTGATGCCCT 59.113 45.455 0.00 0.00 0.00 5.19
240 241 3.304928 CCAGCTTCCGAATAATTGATGCC 60.305 47.826 0.00 0.00 31.58 4.40
241 242 3.565482 TCCAGCTTCCGAATAATTGATGC 59.435 43.478 0.00 0.00 0.00 3.91
242 243 4.023707 GGTCCAGCTTCCGAATAATTGATG 60.024 45.833 0.00 0.00 0.00 3.07
243 244 4.137543 GGTCCAGCTTCCGAATAATTGAT 58.862 43.478 0.00 0.00 0.00 2.57
244 245 3.054728 TGGTCCAGCTTCCGAATAATTGA 60.055 43.478 0.00 0.00 0.00 2.57
245 246 3.278574 TGGTCCAGCTTCCGAATAATTG 58.721 45.455 0.00 0.00 0.00 2.32
246 247 3.644966 TGGTCCAGCTTCCGAATAATT 57.355 42.857 0.00 0.00 0.00 1.40
250 251 0.107017 CCATGGTCCAGCTTCCGAAT 60.107 55.000 2.57 0.00 0.00 3.34
252 253 0.982852 ATCCATGGTCCAGCTTCCGA 60.983 55.000 12.58 0.00 0.00 4.55
255 256 2.295885 CTGAATCCATGGTCCAGCTTC 58.704 52.381 12.58 7.19 0.00 3.86
256 257 1.064166 CCTGAATCCATGGTCCAGCTT 60.064 52.381 12.58 0.00 0.00 3.74
257 258 0.549950 CCTGAATCCATGGTCCAGCT 59.450 55.000 12.58 0.00 0.00 4.24
258 259 0.548031 TCCTGAATCCATGGTCCAGC 59.452 55.000 12.58 0.00 0.00 4.85
259 260 3.370840 TTTCCTGAATCCATGGTCCAG 57.629 47.619 12.58 15.91 0.00 3.86
260 261 3.269118 TGATTTCCTGAATCCATGGTCCA 59.731 43.478 12.58 7.41 42.90 4.02
261 262 3.902218 TGATTTCCTGAATCCATGGTCC 58.098 45.455 12.58 2.77 42.90 4.46
262 263 5.185635 TGTTTGATTTCCTGAATCCATGGTC 59.814 40.000 12.58 3.21 42.90 4.02
263 264 5.085920 TGTTTGATTTCCTGAATCCATGGT 58.914 37.500 12.58 0.00 42.90 3.55
264 265 5.419788 TCTGTTTGATTTCCTGAATCCATGG 59.580 40.000 4.97 4.97 42.90 3.66
265 266 6.519679 TCTGTTTGATTTCCTGAATCCATG 57.480 37.500 0.00 0.00 42.90 3.66
266 267 6.406624 GCATCTGTTTGATTTCCTGAATCCAT 60.407 38.462 0.00 0.00 42.90 3.41
267 268 5.105635 GCATCTGTTTGATTTCCTGAATCCA 60.106 40.000 0.00 0.00 42.90 3.41
268 269 5.126707 AGCATCTGTTTGATTTCCTGAATCC 59.873 40.000 0.00 0.00 42.90 3.01
269 270 6.034591 CAGCATCTGTTTGATTTCCTGAATC 58.965 40.000 0.00 0.00 43.67 2.52
270 271 5.105473 CCAGCATCTGTTTGATTTCCTGAAT 60.105 40.000 0.00 0.00 32.05 2.57
272 273 3.760151 CCAGCATCTGTTTGATTTCCTGA 59.240 43.478 0.00 0.00 32.05 3.86
274 275 2.494870 GCCAGCATCTGTTTGATTTCCT 59.505 45.455 0.00 0.00 32.05 3.36
275 276 2.733227 CGCCAGCATCTGTTTGATTTCC 60.733 50.000 0.00 0.00 32.05 3.13
276 277 2.095059 ACGCCAGCATCTGTTTGATTTC 60.095 45.455 0.00 0.00 32.05 2.17
278 279 1.538047 ACGCCAGCATCTGTTTGATT 58.462 45.000 0.00 0.00 32.05 2.57
281 282 0.592637 TCAACGCCAGCATCTGTTTG 59.407 50.000 0.00 0.00 0.00 2.93
282 283 1.267806 CTTCAACGCCAGCATCTGTTT 59.732 47.619 0.00 0.00 0.00 2.83
283 284 0.877071 CTTCAACGCCAGCATCTGTT 59.123 50.000 0.00 0.00 0.00 3.16
285 286 1.159285 TTCTTCAACGCCAGCATCTG 58.841 50.000 0.00 0.00 0.00 2.90
286 287 1.741706 CATTCTTCAACGCCAGCATCT 59.258 47.619 0.00 0.00 0.00 2.90
287 288 1.739466 TCATTCTTCAACGCCAGCATC 59.261 47.619 0.00 0.00 0.00 3.91
289 290 0.874390 GTCATTCTTCAACGCCAGCA 59.126 50.000 0.00 0.00 0.00 4.41
290 291 1.160137 AGTCATTCTTCAACGCCAGC 58.840 50.000 0.00 0.00 0.00 4.85
291 292 3.325870 TGTAGTCATTCTTCAACGCCAG 58.674 45.455 0.00 0.00 0.00 4.85
292 293 3.394674 TGTAGTCATTCTTCAACGCCA 57.605 42.857 0.00 0.00 0.00 5.69
293 294 4.213482 ACTTTGTAGTCATTCTTCAACGCC 59.787 41.667 0.00 0.00 34.17 5.68
294 295 5.050363 TCACTTTGTAGTCATTCTTCAACGC 60.050 40.000 0.00 0.00 34.17 4.84
295 296 6.355638 GTCACTTTGTAGTCATTCTTCAACG 58.644 40.000 0.00 0.00 34.17 4.10
296 297 6.018994 ACGTCACTTTGTAGTCATTCTTCAAC 60.019 38.462 0.00 0.00 34.17 3.18
297 298 6.019075 CACGTCACTTTGTAGTCATTCTTCAA 60.019 38.462 0.00 0.00 32.94 2.69
298 299 5.462068 CACGTCACTTTGTAGTCATTCTTCA 59.538 40.000 0.00 0.00 30.26 3.02
299 300 5.107453 CCACGTCACTTTGTAGTCATTCTTC 60.107 44.000 0.00 0.00 30.26 2.87
300 301 4.750098 CCACGTCACTTTGTAGTCATTCTT 59.250 41.667 0.00 0.00 30.26 2.52
301 302 4.307432 CCACGTCACTTTGTAGTCATTCT 58.693 43.478 0.00 0.00 30.26 2.40
302 303 3.432252 CCCACGTCACTTTGTAGTCATTC 59.568 47.826 0.00 0.00 30.26 2.67
306 307 2.132762 CACCCACGTCACTTTGTAGTC 58.867 52.381 0.00 0.00 30.26 2.59
308 309 2.519377 TCACCCACGTCACTTTGTAG 57.481 50.000 0.00 0.00 0.00 2.74
309 310 2.937799 GTTTCACCCACGTCACTTTGTA 59.062 45.455 0.00 0.00 0.00 2.41
310 311 1.741145 GTTTCACCCACGTCACTTTGT 59.259 47.619 0.00 0.00 0.00 2.83
311 312 1.267832 CGTTTCACCCACGTCACTTTG 60.268 52.381 0.00 0.00 32.80 2.77
313 314 1.433837 GCGTTTCACCCACGTCACTT 61.434 55.000 0.00 0.00 39.92 3.16
314 315 1.885850 GCGTTTCACCCACGTCACT 60.886 57.895 0.00 0.00 39.92 3.41
315 316 2.174969 TGCGTTTCACCCACGTCAC 61.175 57.895 0.00 0.00 39.92 3.67
324 325 0.869730 ACATTACCGGTGCGTTTCAC 59.130 50.000 19.93 0.00 44.90 3.18
325 326 1.264557 CAACATTACCGGTGCGTTTCA 59.735 47.619 19.93 0.00 0.00 2.69
326 327 1.958417 CAACATTACCGGTGCGTTTC 58.042 50.000 19.93 0.00 0.00 2.78
327 328 0.039888 GCAACATTACCGGTGCGTTT 60.040 50.000 19.93 2.09 0.00 3.60
328 329 1.577421 GCAACATTACCGGTGCGTT 59.423 52.632 19.93 14.56 0.00 4.84
329 330 2.329614 GGCAACATTACCGGTGCGT 61.330 57.895 19.93 8.58 0.00 5.24
330 331 2.483288 GGCAACATTACCGGTGCG 59.517 61.111 19.93 7.84 0.00 5.34
336 337 0.378962 TTATGCGCGGCAACATTACC 59.621 50.000 8.83 0.00 43.62 2.85
337 338 2.181426 TTTATGCGCGGCAACATTAC 57.819 45.000 8.83 0.00 43.62 1.89
340 341 2.858260 GCTAATTTATGCGCGGCAACAT 60.858 45.455 8.83 5.08 43.62 2.71
341 342 1.532921 GCTAATTTATGCGCGGCAACA 60.533 47.619 8.83 0.00 43.62 3.33
342 343 1.120437 GCTAATTTATGCGCGGCAAC 58.880 50.000 8.83 0.00 43.62 4.17
343 344 0.735471 TGCTAATTTATGCGCGGCAA 59.265 45.000 8.83 0.00 43.62 4.52
345 346 1.833860 TTTGCTAATTTATGCGCGGC 58.166 45.000 8.83 0.00 0.00 6.53
346 347 3.434637 ACTTTTGCTAATTTATGCGCGG 58.565 40.909 8.83 0.00 0.00 6.46
347 348 4.670621 CCTACTTTTGCTAATTTATGCGCG 59.329 41.667 0.00 0.00 0.00 6.86
348 349 4.976116 CCCTACTTTTGCTAATTTATGCGC 59.024 41.667 0.00 0.00 0.00 6.09
349 350 5.067283 ACCCCTACTTTTGCTAATTTATGCG 59.933 40.000 0.00 0.00 0.00 4.73
350 351 6.465439 ACCCCTACTTTTGCTAATTTATGC 57.535 37.500 0.00 0.00 0.00 3.14
351 352 7.778382 ACCTACCCCTACTTTTGCTAATTTATG 59.222 37.037 0.00 0.00 0.00 1.90
352 353 7.778382 CACCTACCCCTACTTTTGCTAATTTAT 59.222 37.037 0.00 0.00 0.00 1.40
354 355 5.949952 CACCTACCCCTACTTTTGCTAATTT 59.050 40.000 0.00 0.00 0.00 1.82
356 357 4.786454 TCACCTACCCCTACTTTTGCTAAT 59.214 41.667 0.00 0.00 0.00 1.73
357 358 4.169666 TCACCTACCCCTACTTTTGCTAA 58.830 43.478 0.00 0.00 0.00 3.09
358 359 3.793712 TCACCTACCCCTACTTTTGCTA 58.206 45.455 0.00 0.00 0.00 3.49
359 360 2.627933 TCACCTACCCCTACTTTTGCT 58.372 47.619 0.00 0.00 0.00 3.91
360 361 3.054655 TCATCACCTACCCCTACTTTTGC 60.055 47.826 0.00 0.00 0.00 3.68
362 363 6.187682 CAATTCATCACCTACCCCTACTTTT 58.812 40.000 0.00 0.00 0.00 2.27
363 364 5.253096 ACAATTCATCACCTACCCCTACTTT 59.747 40.000 0.00 0.00 0.00 2.66
365 366 4.164221 CACAATTCATCACCTACCCCTACT 59.836 45.833 0.00 0.00 0.00 2.57
366 367 4.080526 ACACAATTCATCACCTACCCCTAC 60.081 45.833 0.00 0.00 0.00 3.18
368 369 2.919602 ACACAATTCATCACCTACCCCT 59.080 45.455 0.00 0.00 0.00 4.79
370 371 4.881850 CCTTACACAATTCATCACCTACCC 59.118 45.833 0.00 0.00 0.00 3.69
371 372 5.497474 ACCTTACACAATTCATCACCTACC 58.503 41.667 0.00 0.00 0.00 3.18
372 373 8.612619 CATAACCTTACACAATTCATCACCTAC 58.387 37.037 0.00 0.00 0.00 3.18
374 375 7.175104 ACATAACCTTACACAATTCATCACCT 58.825 34.615 0.00 0.00 0.00 4.00
375 376 7.391148 ACATAACCTTACACAATTCATCACC 57.609 36.000 0.00 0.00 0.00 4.02
377 378 7.093988 CCCAACATAACCTTACACAATTCATCA 60.094 37.037 0.00 0.00 0.00 3.07
378 379 7.257722 CCCAACATAACCTTACACAATTCATC 58.742 38.462 0.00 0.00 0.00 2.92
379 380 6.154363 CCCCAACATAACCTTACACAATTCAT 59.846 38.462 0.00 0.00 0.00 2.57
380 381 5.478679 CCCCAACATAACCTTACACAATTCA 59.521 40.000 0.00 0.00 0.00 2.57
382 383 4.775253 CCCCCAACATAACCTTACACAATT 59.225 41.667 0.00 0.00 0.00 2.32
383 384 4.202738 ACCCCCAACATAACCTTACACAAT 60.203 41.667 0.00 0.00 0.00 2.71
384 385 3.140519 ACCCCCAACATAACCTTACACAA 59.859 43.478 0.00 0.00 0.00 3.33
385 386 2.717515 ACCCCCAACATAACCTTACACA 59.282 45.455 0.00 0.00 0.00 3.72
386 387 3.444792 ACCCCCAACATAACCTTACAC 57.555 47.619 0.00 0.00 0.00 2.90
387 388 3.245336 GGAACCCCCAACATAACCTTACA 60.245 47.826 0.00 0.00 34.14 2.41
388 389 3.359033 GGAACCCCCAACATAACCTTAC 58.641 50.000 0.00 0.00 34.14 2.34
389 390 3.743092 GGAACCCCCAACATAACCTTA 57.257 47.619 0.00 0.00 34.14 2.69
405 406 1.273327 CAAAATGCAGTCTGGGGGAAC 59.727 52.381 1.14 0.00 0.00 3.62
406 407 1.631405 CAAAATGCAGTCTGGGGGAA 58.369 50.000 1.14 0.00 0.00 3.97
407 408 0.251742 CCAAAATGCAGTCTGGGGGA 60.252 55.000 0.00 0.00 0.00 4.81
408 409 0.251742 TCCAAAATGCAGTCTGGGGG 60.252 55.000 6.68 0.00 0.00 5.40
409 410 1.479323 CATCCAAAATGCAGTCTGGGG 59.521 52.381 6.68 0.00 0.00 4.96
410 411 2.173519 ACATCCAAAATGCAGTCTGGG 58.826 47.619 6.68 0.00 0.00 4.45
411 412 5.587388 ATTACATCCAAAATGCAGTCTGG 57.413 39.130 0.00 0.00 0.00 3.86
412 413 7.148540 CCAAAATTACATCCAAAATGCAGTCTG 60.149 37.037 0.00 0.00 0.00 3.51
414 415 6.873076 TCCAAAATTACATCCAAAATGCAGTC 59.127 34.615 0.00 0.00 0.00 3.51
417 418 7.333921 GTCATCCAAAATTACATCCAAAATGCA 59.666 33.333 0.00 0.00 0.00 3.96
418 419 7.333921 TGTCATCCAAAATTACATCCAAAATGC 59.666 33.333 0.00 0.00 0.00 3.56
419 420 8.774890 TGTCATCCAAAATTACATCCAAAATG 57.225 30.769 0.00 0.00 0.00 2.32
420 421 9.962809 AATGTCATCCAAAATTACATCCAAAAT 57.037 25.926 0.00 0.00 30.71 1.82
423 424 7.555087 GGAATGTCATCCAAAATTACATCCAA 58.445 34.615 0.00 0.00 39.42 3.53
424 425 6.183360 CGGAATGTCATCCAAAATTACATCCA 60.183 38.462 0.00 0.00 39.61 3.41
425 426 6.039270 TCGGAATGTCATCCAAAATTACATCC 59.961 38.462 0.00 0.00 39.61 3.51
426 427 7.026631 TCGGAATGTCATCCAAAATTACATC 57.973 36.000 0.00 0.00 39.61 3.06
427 428 6.460123 GCTCGGAATGTCATCCAAAATTACAT 60.460 38.462 0.00 0.00 39.61 2.29
428 429 5.163663 GCTCGGAATGTCATCCAAAATTACA 60.164 40.000 0.00 0.00 39.61 2.41
431 432 4.019174 AGCTCGGAATGTCATCCAAAATT 58.981 39.130 0.00 0.00 39.61 1.82
432 433 3.624777 AGCTCGGAATGTCATCCAAAAT 58.375 40.909 0.00 0.00 39.61 1.82
433 434 3.071874 AGCTCGGAATGTCATCCAAAA 57.928 42.857 0.00 0.00 39.61 2.44
434 435 2.787473 AGCTCGGAATGTCATCCAAA 57.213 45.000 0.00 0.00 39.61 3.28
435 436 2.499693 TGTAGCTCGGAATGTCATCCAA 59.500 45.455 0.00 0.00 39.61 3.53
436 437 2.107366 TGTAGCTCGGAATGTCATCCA 58.893 47.619 0.00 0.00 39.61 3.41
437 438 2.101582 AGTGTAGCTCGGAATGTCATCC 59.898 50.000 0.00 0.00 36.05 3.51
438 439 3.444703 AGTGTAGCTCGGAATGTCATC 57.555 47.619 0.00 0.00 0.00 2.92
439 440 3.895232 AAGTGTAGCTCGGAATGTCAT 57.105 42.857 0.00 0.00 0.00 3.06
440 441 3.762288 AGTAAGTGTAGCTCGGAATGTCA 59.238 43.478 0.00 0.00 0.00 3.58
441 442 4.373348 AGTAAGTGTAGCTCGGAATGTC 57.627 45.455 0.00 0.00 0.00 3.06
443 444 7.772332 ATTTAAGTAAGTGTAGCTCGGAATG 57.228 36.000 0.00 0.00 0.00 2.67
446 447 9.362539 CTTTTATTTAAGTAAGTGTAGCTCGGA 57.637 33.333 0.00 0.00 0.00 4.55
447 448 8.114905 GCTTTTATTTAAGTAAGTGTAGCTCGG 58.885 37.037 0.00 0.00 0.00 4.63
449 450 8.114905 CCGCTTTTATTTAAGTAAGTGTAGCTC 58.885 37.037 0.00 0.00 0.00 4.09
451 452 6.685828 GCCGCTTTTATTTAAGTAAGTGTAGC 59.314 38.462 0.00 0.00 0.00 3.58
454 455 6.563222 TGCCGCTTTTATTTAAGTAAGTGT 57.437 33.333 0.00 0.00 0.00 3.55
455 456 6.307077 GGTTGCCGCTTTTATTTAAGTAAGTG 59.693 38.462 0.00 0.00 0.00 3.16
457 458 6.617879 AGGTTGCCGCTTTTATTTAAGTAAG 58.382 36.000 0.00 0.00 0.00 2.34
458 459 6.578163 AGGTTGCCGCTTTTATTTAAGTAA 57.422 33.333 0.00 0.00 0.00 2.24
460 461 5.462530 AAGGTTGCCGCTTTTATTTAAGT 57.537 34.783 0.00 0.00 0.00 2.24
461 462 5.347635 GGAAAGGTTGCCGCTTTTATTTAAG 59.652 40.000 0.00 0.00 0.00 1.85
462 463 5.231702 GGAAAGGTTGCCGCTTTTATTTAA 58.768 37.500 0.00 0.00 0.00 1.52
464 465 3.556213 GGGAAAGGTTGCCGCTTTTATTT 60.556 43.478 0.00 0.00 0.00 1.40
466 467 1.548719 GGGAAAGGTTGCCGCTTTTAT 59.451 47.619 0.00 0.00 0.00 1.40
468 469 1.745890 GGGAAAGGTTGCCGCTTTT 59.254 52.632 0.00 0.00 0.00 2.27
469 470 2.207229 GGGGAAAGGTTGCCGCTTT 61.207 57.895 0.00 0.00 42.93 3.51
470 471 2.600470 GGGGAAAGGTTGCCGCTT 60.600 61.111 0.00 0.00 42.93 4.68
471 472 3.580319 AGGGGAAAGGTTGCCGCT 61.580 61.111 0.24 0.24 42.93 5.52
472 473 3.062466 GAGGGGAAAGGTTGCCGC 61.062 66.667 0.00 0.00 42.93 6.53
473 474 0.825840 TTTGAGGGGAAAGGTTGCCG 60.826 55.000 0.00 0.00 42.93 5.69
474 475 1.419381 TTTTGAGGGGAAAGGTTGCC 58.581 50.000 0.00 0.00 40.98 4.52
491 492 1.369625 AGCGATCGCCGATTCTTTTT 58.630 45.000 34.89 10.97 43.17 1.94
492 493 1.369625 AAGCGATCGCCGATTCTTTT 58.630 45.000 34.89 17.93 44.27 2.27
493 494 3.065575 AAGCGATCGCCGATTCTTT 57.934 47.368 34.89 18.68 44.27 2.52
494 495 4.835927 AAGCGATCGCCGATTCTT 57.164 50.000 34.89 19.42 44.27 2.52
498 499 2.659897 GCAGAAGCGATCGCCGAT 60.660 61.111 34.89 22.19 43.17 4.18
499 500 4.128388 TGCAGAAGCGATCGCCGA 62.128 61.111 34.89 11.01 46.23 5.54
583 585 3.302347 CTTCTCTTCGGCGGCACCT 62.302 63.158 10.53 0.00 35.61 4.00
789 2247 8.677148 TCCATGAATTATAGGCTTGTAACTTC 57.323 34.615 0.00 1.16 0.00 3.01
807 2335 7.394077 TGAATTTGAGCTGATAAACTCCATGAA 59.606 33.333 0.00 0.00 31.65 2.57
848 2376 2.083774 CCAAAGATCGCAGCCTAAACA 58.916 47.619 0.00 0.00 0.00 2.83
889 2791 4.645535 TCTCAAGATTAACACAAGCAGCT 58.354 39.130 0.00 0.00 0.00 4.24
957 2859 4.148891 GGATGAAAACTAACTCGCAAACG 58.851 43.478 0.00 0.00 42.01 3.60
1037 3796 8.552296 CAATAATAGCATTAGGATAGAAGGGGT 58.448 37.037 0.00 0.00 0.00 4.95
1088 5468 1.535028 CCGCAGATGCAACAGTTACAA 59.465 47.619 5.55 0.00 42.21 2.41
1176 5556 3.679502 GTGCTATTGTTGCCAAACCATTC 59.320 43.478 0.00 0.00 35.25 2.67
1365 5759 9.445878 ACTCAGGCATAATCACTTCATTATATG 57.554 33.333 0.00 0.00 29.39 1.78
1414 5813 2.550277 AAAGGAAAATGGGGCCCTAG 57.450 50.000 25.93 0.00 0.00 3.02
1496 5897 2.095252 GGAGGTGAAAGTCGCGAGC 61.095 63.158 10.24 4.59 0.00 5.03
1497 5898 0.319555 TTGGAGGTGAAAGTCGCGAG 60.320 55.000 10.24 0.00 0.00 5.03
1668 6077 2.182014 GTTTTGTCGAACACCTTGTGC 58.818 47.619 0.00 0.00 36.98 4.57
1838 6248 1.213926 AGGATCATTGCAAGGTCCTCC 59.786 52.381 21.64 19.16 34.26 4.30
1839 6249 2.725221 AGGATCATTGCAAGGTCCTC 57.275 50.000 21.64 13.12 34.26 3.71
1840 6250 2.158696 GCTAGGATCATTGCAAGGTCCT 60.159 50.000 26.68 26.68 41.85 3.85
1882 6295 2.664851 CTGAACCGCCGTGCTTCA 60.665 61.111 0.00 0.00 0.00 3.02
1892 6305 1.067425 TGTCGACCCATAACTGAACCG 60.067 52.381 14.12 0.00 0.00 4.44
1910 6323 5.648092 CGATCTTACCCTCCAAATTTTCTGT 59.352 40.000 0.00 0.00 0.00 3.41
1947 6361 4.082787 CCGCAAAATAGTGACTCACCAATT 60.083 41.667 5.51 3.92 34.49 2.32
1952 6366 6.292919 GGATTATCCGCAAAATAGTGACTCAC 60.293 42.308 0.38 0.38 34.10 3.51
1957 6371 4.062293 CGGGATTATCCGCAAAATAGTGA 58.938 43.478 5.03 0.00 43.71 3.41
1982 6396 1.509923 GGAAGTACGACTCGGGGTG 59.490 63.158 2.98 0.00 0.00 4.61
2005 6419 2.673368 CTCGGTGCTCATCCTAAAACAC 59.327 50.000 0.00 0.00 0.00 3.32
2008 6422 3.244422 ACAACTCGGTGCTCATCCTAAAA 60.244 43.478 0.00 0.00 0.00 1.52
2042 6456 0.108615 GGCTCGCTAGTTTCTCTGCA 60.109 55.000 0.00 0.00 0.00 4.41
2256 6675 2.365617 GAGATCTCAAATACTCCGGGCA 59.634 50.000 18.11 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.