Multiple sequence alignment - TraesCS5D01G103400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G103400 chr5D 100.000 3215 0 0 1 3215 117244897 117241683 0.000000e+00 5938
1 TraesCS5D01G103400 chr5D 95.736 938 13 5 2302 3215 104595332 104594398 0.000000e+00 1485
2 TraesCS5D01G103400 chr5A 95.719 1635 51 13 631 2251 126101540 126099911 0.000000e+00 2614
3 TraesCS5D01G103400 chr5A 91.515 165 10 3 364 524 126101724 126101560 1.160000e-54 224
4 TraesCS5D01G103400 chr5B 90.919 1905 78 30 409 2251 129858755 129860626 0.000000e+00 2471
5 TraesCS5D01G103400 chr7D 98.528 951 11 3 2267 3215 582616092 582617041 0.000000e+00 1676
6 TraesCS5D01G103400 chr7D 88.556 367 38 3 1 364 435486601 435486966 2.940000e-120 442
7 TraesCS5D01G103400 chr7D 98.571 140 2 0 2302 2441 7654888 7654749 6.890000e-62 248
8 TraesCS5D01G103400 chrUn 98.423 951 13 2 2267 3215 99681537 99682487 0.000000e+00 1672
9 TraesCS5D01G103400 chrUn 98.107 951 16 2 2267 3215 26529451 26530401 0.000000e+00 1655
10 TraesCS5D01G103400 chr1D 98.318 951 13 3 2267 3215 407962475 407961526 0.000000e+00 1664
11 TraesCS5D01G103400 chr1D 98.216 953 13 3 2267 3215 481423800 481424752 0.000000e+00 1663
12 TraesCS5D01G103400 chr1D 90.096 313 7 17 2302 2607 14137965 14138260 5.030000e-103 385
13 TraesCS5D01G103400 chr6D 98.212 951 13 3 2267 3215 456357769 456358717 0.000000e+00 1659
14 TraesCS5D01G103400 chr6D 98.107 951 13 4 2267 3215 30117794 30118741 0.000000e+00 1652
15 TraesCS5D01G103400 chr6D 88.746 311 7 19 2307 2607 421652260 421652552 3.940000e-94 355
16 TraesCS5D01G103400 chr6D 98.571 140 2 0 2302 2441 468681940 468681801 6.890000e-62 248
17 TraesCS5D01G103400 chr4D 98.212 951 13 3 2267 3215 467659523 467658575 0.000000e+00 1659
18 TraesCS5D01G103400 chr4D 95.217 230 4 3 2302 2530 118580048 118580271 1.100000e-94 357
19 TraesCS5D01G103400 chr3D 98.107 951 14 4 2267 3215 21349784 21348836 0.000000e+00 1653
20 TraesCS5D01G103400 chr3D 98.146 917 14 2 2302 3215 204409574 204410490 0.000000e+00 1596
21 TraesCS5D01G103400 chr3D 97.399 692 11 2 2302 2992 32621698 32621013 0.000000e+00 1171
22 TraesCS5D01G103400 chr3D 76.439 556 107 17 1192 1731 544361064 544360517 2.440000e-71 279
23 TraesCS5D01G103400 chr3D 98.571 140 2 0 2302 2441 7189708 7189847 6.890000e-62 248
24 TraesCS5D01G103400 chr4B 76.981 1060 193 41 1191 2213 66472745 66471700 2.800000e-155 558
25 TraesCS5D01G103400 chr3B 77.148 547 107 15 1192 1731 720219205 720218670 5.210000e-78 302
26 TraesCS5D01G103400 chr3A 76.225 551 109 18 1192 1731 681343623 681343084 4.090000e-69 272


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G103400 chr5D 117241683 117244897 3214 True 5938 5938 100.000 1 3215 1 chr5D.!!$R2 3214
1 TraesCS5D01G103400 chr5D 104594398 104595332 934 True 1485 1485 95.736 2302 3215 1 chr5D.!!$R1 913
2 TraesCS5D01G103400 chr5A 126099911 126101724 1813 True 1419 2614 93.617 364 2251 2 chr5A.!!$R1 1887
3 TraesCS5D01G103400 chr5B 129858755 129860626 1871 False 2471 2471 90.919 409 2251 1 chr5B.!!$F1 1842
4 TraesCS5D01G103400 chr7D 582616092 582617041 949 False 1676 1676 98.528 2267 3215 1 chr7D.!!$F2 948
5 TraesCS5D01G103400 chrUn 99681537 99682487 950 False 1672 1672 98.423 2267 3215 1 chrUn.!!$F2 948
6 TraesCS5D01G103400 chrUn 26529451 26530401 950 False 1655 1655 98.107 2267 3215 1 chrUn.!!$F1 948
7 TraesCS5D01G103400 chr1D 407961526 407962475 949 True 1664 1664 98.318 2267 3215 1 chr1D.!!$R1 948
8 TraesCS5D01G103400 chr1D 481423800 481424752 952 False 1663 1663 98.216 2267 3215 1 chr1D.!!$F2 948
9 TraesCS5D01G103400 chr6D 456357769 456358717 948 False 1659 1659 98.212 2267 3215 1 chr6D.!!$F3 948
10 TraesCS5D01G103400 chr6D 30117794 30118741 947 False 1652 1652 98.107 2267 3215 1 chr6D.!!$F1 948
11 TraesCS5D01G103400 chr4D 467658575 467659523 948 True 1659 1659 98.212 2267 3215 1 chr4D.!!$R1 948
12 TraesCS5D01G103400 chr3D 21348836 21349784 948 True 1653 1653 98.107 2267 3215 1 chr3D.!!$R1 948
13 TraesCS5D01G103400 chr3D 204409574 204410490 916 False 1596 1596 98.146 2302 3215 1 chr3D.!!$F2 913
14 TraesCS5D01G103400 chr3D 32621013 32621698 685 True 1171 1171 97.399 2302 2992 1 chr3D.!!$R2 690
15 TraesCS5D01G103400 chr3D 544360517 544361064 547 True 279 279 76.439 1192 1731 1 chr3D.!!$R3 539
16 TraesCS5D01G103400 chr4B 66471700 66472745 1045 True 558 558 76.981 1191 2213 1 chr4B.!!$R1 1022
17 TraesCS5D01G103400 chr3B 720218670 720219205 535 True 302 302 77.148 1192 1731 1 chr3B.!!$R1 539
18 TraesCS5D01G103400 chr3A 681343084 681343623 539 True 272 272 76.225 1192 1731 1 chr3A.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.035317 TGCTTGAGGAGTGTTCGCAT 59.965 50.0 0.0 0.0 0.00 4.73 F
290 291 0.037326 TGAGGAGTGTTCGCATGTCC 60.037 55.0 0.0 0.0 34.83 4.02 F
291 292 0.247736 GAGGAGTGTTCGCATGTCCT 59.752 55.0 0.0 0.0 42.63 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 1707 0.167470 TCGTTGATCTCGTCGTCCAC 59.833 55.0 9.75 0.0 0.00 4.02 R
2062 2155 0.666274 CTGTCGCGGTTGCAGTCTAA 60.666 55.0 6.13 0.0 42.97 2.10 R
2267 2360 0.815095 CATGAACCGGGGTAAAAGCC 59.185 55.0 6.32 0.0 34.31 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.629523 GGTGGTTGTCCGGGCGAA 62.630 66.667 0.00 0.00 36.30 4.70
19 20 2.592287 GTGGTTGTCCGGGCGAAA 60.592 61.111 0.00 0.00 36.30 3.46
20 21 2.281208 TGGTTGTCCGGGCGAAAG 60.281 61.111 0.00 0.00 36.30 2.62
34 35 0.040067 CGAAAGCACTTCCACAAGGC 60.040 55.000 0.00 0.00 33.37 4.35
35 36 1.032014 GAAAGCACTTCCACAAGGCA 58.968 50.000 0.00 0.00 33.37 4.75
36 37 0.746659 AAAGCACTTCCACAAGGCAC 59.253 50.000 0.00 0.00 33.37 5.01
37 38 0.395586 AAGCACTTCCACAAGGCACA 60.396 50.000 0.00 0.00 33.37 4.57
38 39 0.395586 AGCACTTCCACAAGGCACAA 60.396 50.000 0.00 0.00 33.37 3.33
39 40 0.459489 GCACTTCCACAAGGCACAAA 59.541 50.000 0.00 0.00 33.37 2.83
40 41 1.134848 GCACTTCCACAAGGCACAAAA 60.135 47.619 0.00 0.00 33.37 2.44
41 42 2.676463 GCACTTCCACAAGGCACAAAAA 60.676 45.455 0.00 0.00 33.37 1.94
59 60 3.312736 AAAAGAGGGTGACACATTGGT 57.687 42.857 8.08 0.00 0.00 3.67
60 61 4.447138 AAAAGAGGGTGACACATTGGTA 57.553 40.909 8.08 0.00 0.00 3.25
61 62 4.447138 AAAGAGGGTGACACATTGGTAA 57.553 40.909 8.08 0.00 0.00 2.85
62 63 4.657814 AAGAGGGTGACACATTGGTAAT 57.342 40.909 8.08 0.00 0.00 1.89
63 64 4.222124 AGAGGGTGACACATTGGTAATC 57.778 45.455 8.08 0.00 0.00 1.75
64 65 3.846588 AGAGGGTGACACATTGGTAATCT 59.153 43.478 8.08 0.00 0.00 2.40
65 66 4.289672 AGAGGGTGACACATTGGTAATCTT 59.710 41.667 8.08 0.00 0.00 2.40
66 67 4.335416 AGGGTGACACATTGGTAATCTTG 58.665 43.478 8.08 0.00 0.00 3.02
67 68 3.443681 GGGTGACACATTGGTAATCTTGG 59.556 47.826 8.08 0.00 0.00 3.61
68 69 4.079253 GGTGACACATTGGTAATCTTGGT 58.921 43.478 8.08 0.00 0.00 3.67
69 70 4.082787 GGTGACACATTGGTAATCTTGGTG 60.083 45.833 8.08 0.00 0.00 4.17
70 71 4.078537 TGACACATTGGTAATCTTGGTGG 58.921 43.478 0.00 0.00 0.00 4.61
71 72 2.825532 ACACATTGGTAATCTTGGTGGC 59.174 45.455 0.00 0.00 0.00 5.01
72 73 2.166254 CACATTGGTAATCTTGGTGGCC 59.834 50.000 0.00 0.00 0.00 5.36
73 74 2.042979 ACATTGGTAATCTTGGTGGCCT 59.957 45.455 3.32 0.00 0.00 5.19
74 75 2.214376 TTGGTAATCTTGGTGGCCTG 57.786 50.000 3.32 0.00 0.00 4.85
75 76 1.072266 TGGTAATCTTGGTGGCCTGT 58.928 50.000 3.32 0.00 0.00 4.00
76 77 1.271871 TGGTAATCTTGGTGGCCTGTG 60.272 52.381 3.32 0.00 0.00 3.66
77 78 0.811281 GTAATCTTGGTGGCCTGTGC 59.189 55.000 3.32 0.00 0.00 4.57
78 79 0.698238 TAATCTTGGTGGCCTGTGCT 59.302 50.000 3.32 0.00 37.74 4.40
79 80 0.610232 AATCTTGGTGGCCTGTGCTC 60.610 55.000 3.32 0.00 37.74 4.26
80 81 1.495579 ATCTTGGTGGCCTGTGCTCT 61.496 55.000 3.32 0.00 37.74 4.09
81 82 1.970114 CTTGGTGGCCTGTGCTCTG 60.970 63.158 3.32 0.00 37.74 3.35
82 83 2.687418 CTTGGTGGCCTGTGCTCTGT 62.687 60.000 3.32 0.00 37.74 3.41
83 84 2.670934 GGTGGCCTGTGCTCTGTG 60.671 66.667 3.32 0.00 37.74 3.66
84 85 2.670934 GTGGCCTGTGCTCTGTGG 60.671 66.667 3.32 0.00 37.74 4.17
85 86 2.848679 TGGCCTGTGCTCTGTGGA 60.849 61.111 3.32 0.00 37.74 4.02
86 87 2.431683 GGCCTGTGCTCTGTGGAA 59.568 61.111 0.00 0.00 37.74 3.53
87 88 1.673665 GGCCTGTGCTCTGTGGAAG 60.674 63.158 0.00 0.00 37.74 3.46
88 89 2.331132 GCCTGTGCTCTGTGGAAGC 61.331 63.158 0.00 0.00 33.53 3.86
89 90 1.071987 CCTGTGCTCTGTGGAAGCA 59.928 57.895 0.00 0.00 36.09 3.91
90 91 0.954449 CCTGTGCTCTGTGGAAGCAG 60.954 60.000 0.00 0.00 39.39 4.24
91 92 1.575576 CTGTGCTCTGTGGAAGCAGC 61.576 60.000 0.00 0.00 39.39 5.25
92 93 2.357881 TGCTCTGTGGAAGCAGCG 60.358 61.111 0.00 0.00 36.49 5.18
93 94 3.797546 GCTCTGTGGAAGCAGCGC 61.798 66.667 0.00 0.00 39.52 5.92
94 95 2.357881 CTCTGTGGAAGCAGCGCA 60.358 61.111 11.47 0.00 36.49 6.09
95 96 1.962822 CTCTGTGGAAGCAGCGCAA 60.963 57.895 11.47 0.00 36.49 4.85
96 97 1.302752 TCTGTGGAAGCAGCGCAAT 60.303 52.632 11.47 0.00 36.49 3.56
97 98 1.154093 CTGTGGAAGCAGCGCAATG 60.154 57.895 11.47 0.00 0.00 2.82
98 99 1.859427 CTGTGGAAGCAGCGCAATGT 61.859 55.000 11.47 0.00 0.00 2.71
99 100 1.443194 GTGGAAGCAGCGCAATGTG 60.443 57.895 11.47 0.00 0.00 3.21
100 101 1.600356 TGGAAGCAGCGCAATGTGA 60.600 52.632 11.47 0.00 0.00 3.58
101 102 1.136147 GGAAGCAGCGCAATGTGAG 59.864 57.895 11.47 0.00 0.00 3.51
102 103 1.136147 GAAGCAGCGCAATGTGAGG 59.864 57.895 11.47 0.00 0.00 3.86
103 104 2.262471 GAAGCAGCGCAATGTGAGGG 62.262 60.000 11.47 0.00 0.00 4.30
104 105 3.058160 GCAGCGCAATGTGAGGGT 61.058 61.111 11.47 0.00 0.00 4.34
105 106 2.872557 CAGCGCAATGTGAGGGTG 59.127 61.111 11.47 0.00 0.00 4.61
106 107 1.968017 CAGCGCAATGTGAGGGTGT 60.968 57.895 11.47 0.00 0.00 4.16
107 108 1.228245 AGCGCAATGTGAGGGTGTT 60.228 52.632 11.47 0.00 0.00 3.32
108 109 1.210155 GCGCAATGTGAGGGTGTTC 59.790 57.895 0.30 0.00 0.00 3.18
109 110 1.514678 GCGCAATGTGAGGGTGTTCA 61.515 55.000 0.30 0.00 0.00 3.18
110 111 0.950836 CGCAATGTGAGGGTGTTCAA 59.049 50.000 0.00 0.00 0.00 2.69
111 112 1.334960 CGCAATGTGAGGGTGTTCAAC 60.335 52.381 0.00 0.00 0.00 3.18
123 124 3.859411 GTGTTCAACCAGACAAACCAA 57.141 42.857 0.00 0.00 0.00 3.67
124 125 3.769536 GTGTTCAACCAGACAAACCAAG 58.230 45.455 0.00 0.00 0.00 3.61
125 126 3.192633 GTGTTCAACCAGACAAACCAAGT 59.807 43.478 0.00 0.00 0.00 3.16
126 127 3.192422 TGTTCAACCAGACAAACCAAGTG 59.808 43.478 0.00 0.00 0.00 3.16
127 128 1.748493 TCAACCAGACAAACCAAGTGC 59.252 47.619 0.00 0.00 0.00 4.40
128 129 1.750778 CAACCAGACAAACCAAGTGCT 59.249 47.619 0.00 0.00 0.00 4.40
129 130 2.948979 CAACCAGACAAACCAAGTGCTA 59.051 45.455 0.00 0.00 0.00 3.49
130 131 2.851195 ACCAGACAAACCAAGTGCTAG 58.149 47.619 0.00 0.00 0.00 3.42
131 132 1.537202 CCAGACAAACCAAGTGCTAGC 59.463 52.381 8.10 8.10 0.00 3.42
132 133 1.195448 CAGACAAACCAAGTGCTAGCG 59.805 52.381 10.77 0.00 0.00 4.26
133 134 0.517316 GACAAACCAAGTGCTAGCGG 59.483 55.000 10.77 7.56 0.00 5.52
134 135 1.210155 CAAACCAAGTGCTAGCGGC 59.790 57.895 10.77 5.58 42.22 6.53
135 136 2.325082 AAACCAAGTGCTAGCGGCG 61.325 57.895 10.77 0.51 45.43 6.46
150 151 3.257561 GCGCGCGATCTCACACAT 61.258 61.111 37.18 0.00 0.00 3.21
151 152 2.916423 CGCGCGATCTCACACATC 59.084 61.111 28.94 0.00 0.00 3.06
152 153 1.587350 CGCGCGATCTCACACATCT 60.587 57.895 28.94 0.00 0.00 2.90
153 154 0.317020 CGCGCGATCTCACACATCTA 60.317 55.000 28.94 0.00 0.00 1.98
154 155 1.840181 GCGCGATCTCACACATCTAA 58.160 50.000 12.10 0.00 0.00 2.10
155 156 2.398498 GCGCGATCTCACACATCTAAT 58.602 47.619 12.10 0.00 0.00 1.73
156 157 2.797156 GCGCGATCTCACACATCTAATT 59.203 45.455 12.10 0.00 0.00 1.40
157 158 3.246226 GCGCGATCTCACACATCTAATTT 59.754 43.478 12.10 0.00 0.00 1.82
158 159 4.260375 GCGCGATCTCACACATCTAATTTT 60.260 41.667 12.10 0.00 0.00 1.82
159 160 5.193216 CGCGATCTCACACATCTAATTTTG 58.807 41.667 0.00 0.00 0.00 2.44
160 161 4.966366 GCGATCTCACACATCTAATTTTGC 59.034 41.667 0.00 0.00 0.00 3.68
161 162 5.447683 GCGATCTCACACATCTAATTTTGCA 60.448 40.000 0.00 0.00 0.00 4.08
162 163 6.190264 CGATCTCACACATCTAATTTTGCAG 58.810 40.000 0.00 0.00 0.00 4.41
163 164 5.885230 TCTCACACATCTAATTTTGCAGG 57.115 39.130 0.00 0.00 0.00 4.85
164 165 5.559770 TCTCACACATCTAATTTTGCAGGA 58.440 37.500 0.00 0.00 0.00 3.86
165 166 5.645067 TCTCACACATCTAATTTTGCAGGAG 59.355 40.000 0.00 0.00 0.00 3.69
166 167 5.559770 TCACACATCTAATTTTGCAGGAGA 58.440 37.500 0.00 0.00 0.00 3.71
167 168 6.182627 TCACACATCTAATTTTGCAGGAGAT 58.817 36.000 0.00 0.00 0.00 2.75
168 169 7.337938 TCACACATCTAATTTTGCAGGAGATA 58.662 34.615 0.00 0.00 0.00 1.98
169 170 7.280876 TCACACATCTAATTTTGCAGGAGATAC 59.719 37.037 0.00 0.00 0.00 2.24
170 171 7.066163 CACACATCTAATTTTGCAGGAGATACA 59.934 37.037 0.00 0.00 0.00 2.29
171 172 7.611467 ACACATCTAATTTTGCAGGAGATACAA 59.389 33.333 0.00 0.00 0.00 2.41
172 173 8.127327 CACATCTAATTTTGCAGGAGATACAAG 58.873 37.037 0.00 0.00 0.00 3.16
173 174 8.049117 ACATCTAATTTTGCAGGAGATACAAGA 58.951 33.333 0.00 0.00 0.00 3.02
174 175 8.557864 CATCTAATTTTGCAGGAGATACAAGAG 58.442 37.037 0.00 0.00 0.00 2.85
175 176 7.624549 TCTAATTTTGCAGGAGATACAAGAGT 58.375 34.615 0.00 0.00 0.00 3.24
176 177 6.506500 AATTTTGCAGGAGATACAAGAGTG 57.493 37.500 0.00 0.00 0.00 3.51
177 178 3.616956 TTGCAGGAGATACAAGAGTGG 57.383 47.619 0.00 0.00 0.00 4.00
178 179 2.820178 TGCAGGAGATACAAGAGTGGA 58.180 47.619 0.00 0.00 0.00 4.02
179 180 2.762887 TGCAGGAGATACAAGAGTGGAG 59.237 50.000 0.00 0.00 0.00 3.86
180 181 2.102252 GCAGGAGATACAAGAGTGGAGG 59.898 54.545 0.00 0.00 0.00 4.30
181 182 3.636679 CAGGAGATACAAGAGTGGAGGA 58.363 50.000 0.00 0.00 0.00 3.71
182 183 3.383185 CAGGAGATACAAGAGTGGAGGAC 59.617 52.174 0.00 0.00 0.00 3.85
183 184 3.011821 AGGAGATACAAGAGTGGAGGACA 59.988 47.826 0.00 0.00 0.00 4.02
184 185 3.383185 GGAGATACAAGAGTGGAGGACAG 59.617 52.174 0.00 0.00 0.00 3.51
185 186 2.763448 AGATACAAGAGTGGAGGACAGC 59.237 50.000 0.00 0.00 0.00 4.40
186 187 2.009681 TACAAGAGTGGAGGACAGCA 57.990 50.000 0.00 0.00 0.00 4.41
187 188 1.356124 ACAAGAGTGGAGGACAGCAT 58.644 50.000 0.00 0.00 0.00 3.79
188 189 1.002888 ACAAGAGTGGAGGACAGCATG 59.997 52.381 0.00 0.00 46.00 4.06
189 190 0.617413 AAGAGTGGAGGACAGCATGG 59.383 55.000 0.00 0.00 43.62 3.66
190 191 1.222936 GAGTGGAGGACAGCATGGG 59.777 63.158 0.00 0.00 43.62 4.00
191 192 1.539869 AGTGGAGGACAGCATGGGT 60.540 57.895 0.00 0.00 43.62 4.51
192 193 0.252696 AGTGGAGGACAGCATGGGTA 60.253 55.000 0.00 0.00 43.62 3.69
193 194 0.179000 GTGGAGGACAGCATGGGTAG 59.821 60.000 0.00 0.00 43.62 3.18
194 195 0.982852 TGGAGGACAGCATGGGTAGG 60.983 60.000 0.00 0.00 43.62 3.18
195 196 0.691078 GGAGGACAGCATGGGTAGGA 60.691 60.000 0.00 0.00 43.62 2.94
196 197 0.755686 GAGGACAGCATGGGTAGGAG 59.244 60.000 0.00 0.00 43.62 3.69
197 198 0.043334 AGGACAGCATGGGTAGGAGT 59.957 55.000 0.00 0.00 43.62 3.85
198 199 0.179000 GGACAGCATGGGTAGGAGTG 59.821 60.000 0.00 0.00 43.62 3.51
199 200 0.179000 GACAGCATGGGTAGGAGTGG 59.821 60.000 0.00 0.00 43.62 4.00
200 201 0.547712 ACAGCATGGGTAGGAGTGGT 60.548 55.000 0.00 0.00 43.62 4.16
201 202 1.273609 ACAGCATGGGTAGGAGTGGTA 60.274 52.381 0.00 0.00 43.62 3.25
202 203 1.414181 CAGCATGGGTAGGAGTGGTAG 59.586 57.143 0.00 0.00 0.00 3.18
203 204 0.759346 GCATGGGTAGGAGTGGTAGG 59.241 60.000 0.00 0.00 0.00 3.18
204 205 1.424638 CATGGGTAGGAGTGGTAGGG 58.575 60.000 0.00 0.00 0.00 3.53
205 206 1.024536 ATGGGTAGGAGTGGTAGGGT 58.975 55.000 0.00 0.00 0.00 4.34
206 207 0.794934 TGGGTAGGAGTGGTAGGGTT 59.205 55.000 0.00 0.00 0.00 4.11
207 208 1.201424 GGGTAGGAGTGGTAGGGTTG 58.799 60.000 0.00 0.00 0.00 3.77
208 209 0.540454 GGTAGGAGTGGTAGGGTTGC 59.460 60.000 0.00 0.00 0.00 4.17
209 210 1.272807 GTAGGAGTGGTAGGGTTGCA 58.727 55.000 0.00 0.00 0.00 4.08
210 211 1.626825 GTAGGAGTGGTAGGGTTGCAA 59.373 52.381 0.00 0.00 0.00 4.08
211 212 0.400594 AGGAGTGGTAGGGTTGCAAC 59.599 55.000 21.59 21.59 0.00 4.17
212 213 0.953960 GGAGTGGTAGGGTTGCAACG 60.954 60.000 22.67 0.00 0.00 4.10
213 214 0.250166 GAGTGGTAGGGTTGCAACGT 60.250 55.000 22.67 14.93 0.00 3.99
214 215 0.181824 AGTGGTAGGGTTGCAACGTT 59.818 50.000 22.67 15.32 0.00 3.99
215 216 1.026584 GTGGTAGGGTTGCAACGTTT 58.973 50.000 22.67 12.94 0.00 3.60
216 217 1.406180 GTGGTAGGGTTGCAACGTTTT 59.594 47.619 22.67 10.59 0.00 2.43
217 218 1.405821 TGGTAGGGTTGCAACGTTTTG 59.594 47.619 22.67 0.00 35.62 2.44
218 219 1.406180 GGTAGGGTTGCAACGTTTTGT 59.594 47.619 22.67 6.38 34.90 2.83
219 220 2.456010 GTAGGGTTGCAACGTTTTGTG 58.544 47.619 22.67 0.00 34.90 3.33
220 221 1.178276 AGGGTTGCAACGTTTTGTGA 58.822 45.000 22.67 0.00 34.90 3.58
221 222 1.134175 AGGGTTGCAACGTTTTGTGAG 59.866 47.619 22.67 0.00 34.90 3.51
222 223 1.133407 GGGTTGCAACGTTTTGTGAGA 59.867 47.619 22.67 0.00 34.90 3.27
223 224 2.416162 GGGTTGCAACGTTTTGTGAGAA 60.416 45.455 22.67 0.00 34.90 2.87
224 225 3.246619 GGTTGCAACGTTTTGTGAGAAA 58.753 40.909 22.67 0.00 34.90 2.52
225 226 3.303229 GGTTGCAACGTTTTGTGAGAAAG 59.697 43.478 22.67 0.00 34.90 2.62
226 227 3.840890 TGCAACGTTTTGTGAGAAAGT 57.159 38.095 0.00 0.00 34.90 2.66
227 228 4.948608 TGCAACGTTTTGTGAGAAAGTA 57.051 36.364 0.00 0.00 34.90 2.24
228 229 4.904116 TGCAACGTTTTGTGAGAAAGTAG 58.096 39.130 0.00 0.00 34.90 2.57
229 230 4.393680 TGCAACGTTTTGTGAGAAAGTAGT 59.606 37.500 0.00 0.00 34.90 2.73
230 231 4.962151 GCAACGTTTTGTGAGAAAGTAGTC 59.038 41.667 0.00 0.00 34.90 2.59
231 232 5.220605 GCAACGTTTTGTGAGAAAGTAGTCT 60.221 40.000 0.00 0.00 34.90 3.24
232 233 6.674760 GCAACGTTTTGTGAGAAAGTAGTCTT 60.675 38.462 0.00 0.00 34.90 3.01
233 234 6.980051 ACGTTTTGTGAGAAAGTAGTCTTT 57.020 33.333 0.00 0.00 45.24 2.52
234 235 7.373778 ACGTTTTGTGAGAAAGTAGTCTTTT 57.626 32.000 0.00 0.00 42.99 2.27
235 236 7.241376 ACGTTTTGTGAGAAAGTAGTCTTTTG 58.759 34.615 0.00 0.00 42.99 2.44
236 237 7.094933 ACGTTTTGTGAGAAAGTAGTCTTTTGT 60.095 33.333 0.00 0.00 42.99 2.83
237 238 8.385111 CGTTTTGTGAGAAAGTAGTCTTTTGTA 58.615 33.333 0.00 0.00 42.99 2.41
242 243 8.836413 TGTGAGAAAGTAGTCTTTTGTATTTGG 58.164 33.333 0.00 0.00 42.99 3.28
243 244 8.837389 GTGAGAAAGTAGTCTTTTGTATTTGGT 58.163 33.333 0.00 0.00 42.99 3.67
250 251 9.623000 AGTAGTCTTTTGTATTTGGTAGTTTGT 57.377 29.630 0.00 0.00 0.00 2.83
253 254 8.745590 AGTCTTTTGTATTTGGTAGTTTGTTGT 58.254 29.630 0.00 0.00 0.00 3.32
254 255 8.803799 GTCTTTTGTATTTGGTAGTTTGTTGTG 58.196 33.333 0.00 0.00 0.00 3.33
255 256 7.976734 TCTTTTGTATTTGGTAGTTTGTTGTGG 59.023 33.333 0.00 0.00 0.00 4.17
256 257 7.406031 TTTGTATTTGGTAGTTTGTTGTGGA 57.594 32.000 0.00 0.00 0.00 4.02
257 258 7.589958 TTGTATTTGGTAGTTTGTTGTGGAT 57.410 32.000 0.00 0.00 0.00 3.41
258 259 6.976088 TGTATTTGGTAGTTTGTTGTGGATG 58.024 36.000 0.00 0.00 0.00 3.51
259 260 6.547880 TGTATTTGGTAGTTTGTTGTGGATGT 59.452 34.615 0.00 0.00 0.00 3.06
260 261 4.909696 TTGGTAGTTTGTTGTGGATGTG 57.090 40.909 0.00 0.00 0.00 3.21
261 262 3.892284 TGGTAGTTTGTTGTGGATGTGT 58.108 40.909 0.00 0.00 0.00 3.72
262 263 4.274147 TGGTAGTTTGTTGTGGATGTGTT 58.726 39.130 0.00 0.00 0.00 3.32
263 264 4.097135 TGGTAGTTTGTTGTGGATGTGTTG 59.903 41.667 0.00 0.00 0.00 3.33
264 265 4.097286 GGTAGTTTGTTGTGGATGTGTTGT 59.903 41.667 0.00 0.00 0.00 3.32
265 266 5.297278 GGTAGTTTGTTGTGGATGTGTTGTA 59.703 40.000 0.00 0.00 0.00 2.41
266 267 6.016610 GGTAGTTTGTTGTGGATGTGTTGTAT 60.017 38.462 0.00 0.00 0.00 2.29
267 268 6.463995 AGTTTGTTGTGGATGTGTTGTATT 57.536 33.333 0.00 0.00 0.00 1.89
268 269 6.272318 AGTTTGTTGTGGATGTGTTGTATTG 58.728 36.000 0.00 0.00 0.00 1.90
269 270 4.235939 TGTTGTGGATGTGTTGTATTGC 57.764 40.909 0.00 0.00 0.00 3.56
270 271 3.888323 TGTTGTGGATGTGTTGTATTGCT 59.112 39.130 0.00 0.00 0.00 3.91
271 272 4.340666 TGTTGTGGATGTGTTGTATTGCTT 59.659 37.500 0.00 0.00 0.00 3.91
272 273 4.502171 TGTGGATGTGTTGTATTGCTTG 57.498 40.909 0.00 0.00 0.00 4.01
273 274 4.140536 TGTGGATGTGTTGTATTGCTTGA 58.859 39.130 0.00 0.00 0.00 3.02
274 275 4.216042 TGTGGATGTGTTGTATTGCTTGAG 59.784 41.667 0.00 0.00 0.00 3.02
275 276 3.758023 TGGATGTGTTGTATTGCTTGAGG 59.242 43.478 0.00 0.00 0.00 3.86
276 277 4.009675 GGATGTGTTGTATTGCTTGAGGA 58.990 43.478 0.00 0.00 0.00 3.71
277 278 4.095483 GGATGTGTTGTATTGCTTGAGGAG 59.905 45.833 0.00 0.00 0.00 3.69
278 279 4.085357 TGTGTTGTATTGCTTGAGGAGT 57.915 40.909 0.00 0.00 0.00 3.85
279 280 3.814842 TGTGTTGTATTGCTTGAGGAGTG 59.185 43.478 0.00 0.00 0.00 3.51
280 281 3.815401 GTGTTGTATTGCTTGAGGAGTGT 59.185 43.478 0.00 0.00 0.00 3.55
281 282 4.275936 GTGTTGTATTGCTTGAGGAGTGTT 59.724 41.667 0.00 0.00 0.00 3.32
282 283 4.515191 TGTTGTATTGCTTGAGGAGTGTTC 59.485 41.667 0.00 0.00 0.00 3.18
283 284 3.325870 TGTATTGCTTGAGGAGTGTTCG 58.674 45.455 0.00 0.00 0.00 3.95
284 285 1.160137 ATTGCTTGAGGAGTGTTCGC 58.840 50.000 0.00 0.00 0.00 4.70
285 286 0.179059 TTGCTTGAGGAGTGTTCGCA 60.179 50.000 0.00 0.00 0.00 5.10
286 287 0.035317 TGCTTGAGGAGTGTTCGCAT 59.965 50.000 0.00 0.00 0.00 4.73
287 288 0.445436 GCTTGAGGAGTGTTCGCATG 59.555 55.000 0.00 0.00 0.00 4.06
288 289 1.800805 CTTGAGGAGTGTTCGCATGT 58.199 50.000 0.00 0.00 0.00 3.21
289 290 1.728971 CTTGAGGAGTGTTCGCATGTC 59.271 52.381 0.00 0.00 0.00 3.06
290 291 0.037326 TGAGGAGTGTTCGCATGTCC 60.037 55.000 0.00 0.00 34.83 4.02
291 292 0.247736 GAGGAGTGTTCGCATGTCCT 59.752 55.000 0.00 0.00 42.63 3.85
292 293 0.687354 AGGAGTGTTCGCATGTCCTT 59.313 50.000 0.00 0.00 39.18 3.36
293 294 1.899814 AGGAGTGTTCGCATGTCCTTA 59.100 47.619 0.00 0.00 39.18 2.69
294 295 2.301870 AGGAGTGTTCGCATGTCCTTAA 59.698 45.455 0.00 0.00 39.18 1.85
295 296 2.673368 GGAGTGTTCGCATGTCCTTAAG 59.327 50.000 0.00 0.00 32.99 1.85
296 297 3.326747 GAGTGTTCGCATGTCCTTAAGT 58.673 45.455 0.97 0.00 0.00 2.24
297 298 3.740115 AGTGTTCGCATGTCCTTAAGTT 58.260 40.909 0.97 0.00 0.00 2.66
298 299 4.134563 AGTGTTCGCATGTCCTTAAGTTT 58.865 39.130 0.97 0.00 0.00 2.66
299 300 4.213482 AGTGTTCGCATGTCCTTAAGTTTC 59.787 41.667 0.97 0.00 0.00 2.78
300 301 4.213482 GTGTTCGCATGTCCTTAAGTTTCT 59.787 41.667 0.97 0.00 0.00 2.52
301 302 4.819630 TGTTCGCATGTCCTTAAGTTTCTT 59.180 37.500 0.97 0.00 0.00 2.52
302 303 5.147162 GTTCGCATGTCCTTAAGTTTCTTG 58.853 41.667 0.97 2.01 0.00 3.02
303 304 4.385825 TCGCATGTCCTTAAGTTTCTTGT 58.614 39.130 0.97 0.00 0.00 3.16
304 305 5.543714 TCGCATGTCCTTAAGTTTCTTGTA 58.456 37.500 0.97 0.00 0.00 2.41
305 306 5.992829 TCGCATGTCCTTAAGTTTCTTGTAA 59.007 36.000 0.97 0.00 0.00 2.41
306 307 6.483974 TCGCATGTCCTTAAGTTTCTTGTAAA 59.516 34.615 0.97 0.00 0.00 2.01
307 308 7.174253 TCGCATGTCCTTAAGTTTCTTGTAAAT 59.826 33.333 0.97 0.00 0.00 1.40
308 309 8.447833 CGCATGTCCTTAAGTTTCTTGTAAATA 58.552 33.333 0.97 0.00 0.00 1.40
309 310 9.556030 GCATGTCCTTAAGTTTCTTGTAAATAC 57.444 33.333 0.97 0.00 0.00 1.89
310 311 9.755064 CATGTCCTTAAGTTTCTTGTAAATACG 57.245 33.333 0.97 0.00 0.00 3.06
311 312 8.891671 TGTCCTTAAGTTTCTTGTAAATACGT 57.108 30.769 0.97 0.00 0.00 3.57
312 313 9.328845 TGTCCTTAAGTTTCTTGTAAATACGTT 57.671 29.630 0.00 0.00 0.00 3.99
319 320 7.813645 AGTTTCTTGTAAATACGTTTGATCCC 58.186 34.615 0.00 0.00 0.00 3.85
320 321 7.664318 AGTTTCTTGTAAATACGTTTGATCCCT 59.336 33.333 0.00 0.00 0.00 4.20
321 322 7.989416 TTCTTGTAAATACGTTTGATCCCTT 57.011 32.000 0.00 0.00 0.00 3.95
322 323 7.605410 TCTTGTAAATACGTTTGATCCCTTC 57.395 36.000 0.00 0.00 0.00 3.46
323 324 6.596497 TCTTGTAAATACGTTTGATCCCTTCC 59.404 38.462 0.00 0.00 0.00 3.46
324 325 5.806818 TGTAAATACGTTTGATCCCTTCCA 58.193 37.500 0.00 0.00 0.00 3.53
325 326 6.419791 TGTAAATACGTTTGATCCCTTCCAT 58.580 36.000 0.00 0.00 0.00 3.41
326 327 7.566569 TGTAAATACGTTTGATCCCTTCCATA 58.433 34.615 0.00 0.00 0.00 2.74
327 328 8.047911 TGTAAATACGTTTGATCCCTTCCATAA 58.952 33.333 0.00 0.00 0.00 1.90
328 329 7.948034 AAATACGTTTGATCCCTTCCATAAA 57.052 32.000 0.00 0.00 0.00 1.40
329 330 7.568199 AATACGTTTGATCCCTTCCATAAAG 57.432 36.000 0.00 0.00 34.52 1.85
330 331 5.174037 ACGTTTGATCCCTTCCATAAAGA 57.826 39.130 0.00 0.00 37.12 2.52
331 332 5.755849 ACGTTTGATCCCTTCCATAAAGAT 58.244 37.500 0.00 0.00 37.12 2.40
332 333 6.895782 ACGTTTGATCCCTTCCATAAAGATA 58.104 36.000 0.00 0.00 37.12 1.98
333 334 7.343357 ACGTTTGATCCCTTCCATAAAGATAA 58.657 34.615 0.00 0.00 37.12 1.75
334 335 7.499232 ACGTTTGATCCCTTCCATAAAGATAAG 59.501 37.037 0.00 0.00 37.12 1.73
335 336 7.041098 CGTTTGATCCCTTCCATAAAGATAAGG 60.041 40.741 0.00 0.00 37.12 2.69
336 337 7.465900 TTGATCCCTTCCATAAAGATAAGGT 57.534 36.000 0.00 0.00 37.40 3.50
337 338 8.575736 TTGATCCCTTCCATAAAGATAAGGTA 57.424 34.615 0.00 0.00 37.40 3.08
338 339 7.974504 TGATCCCTTCCATAAAGATAAGGTAC 58.025 38.462 0.00 0.00 37.40 3.34
339 340 6.415206 TCCCTTCCATAAAGATAAGGTACG 57.585 41.667 0.00 0.00 37.40 3.67
340 341 4.995487 CCCTTCCATAAAGATAAGGTACGC 59.005 45.833 0.00 0.00 37.40 4.42
341 342 4.995487 CCTTCCATAAAGATAAGGTACGCC 59.005 45.833 0.00 0.00 37.12 5.68
342 343 5.454187 CCTTCCATAAAGATAAGGTACGCCA 60.454 44.000 0.00 0.00 37.12 5.69
343 344 5.818678 TCCATAAAGATAAGGTACGCCAT 57.181 39.130 0.00 0.00 37.19 4.40
344 345 6.182507 TCCATAAAGATAAGGTACGCCATT 57.817 37.500 0.00 0.00 37.19 3.16
345 346 5.995282 TCCATAAAGATAAGGTACGCCATTG 59.005 40.000 0.00 0.00 37.19 2.82
346 347 5.995282 CCATAAAGATAAGGTACGCCATTGA 59.005 40.000 0.00 0.00 37.19 2.57
347 348 6.073222 CCATAAAGATAAGGTACGCCATTGAC 60.073 42.308 0.00 0.00 37.19 3.18
348 349 3.093717 AGATAAGGTACGCCATTGACG 57.906 47.619 0.00 0.00 37.19 4.35
350 351 3.633525 AGATAAGGTACGCCATTGACGTA 59.366 43.478 0.82 0.82 44.55 3.57
351 352 2.973694 AAGGTACGCCATTGACGTAT 57.026 45.000 8.45 0.00 46.52 3.06
352 353 2.973694 AGGTACGCCATTGACGTATT 57.026 45.000 8.45 0.00 46.52 1.89
353 354 2.817901 AGGTACGCCATTGACGTATTC 58.182 47.619 8.45 4.97 46.52 1.75
354 355 2.429610 AGGTACGCCATTGACGTATTCT 59.570 45.455 8.45 6.94 46.52 2.40
355 356 2.793232 GGTACGCCATTGACGTATTCTC 59.207 50.000 8.45 0.00 46.52 2.87
356 357 1.556564 ACGCCATTGACGTATTCTCG 58.443 50.000 0.00 0.00 43.02 4.04
357 358 1.133598 ACGCCATTGACGTATTCTCGA 59.866 47.619 0.00 0.00 43.02 4.04
358 359 2.190161 CGCCATTGACGTATTCTCGAA 58.810 47.619 0.00 0.00 34.70 3.71
359 360 2.601314 CGCCATTGACGTATTCTCGAAA 59.399 45.455 0.00 0.00 34.70 3.46
360 361 3.061563 CGCCATTGACGTATTCTCGAAAA 59.938 43.478 0.00 0.00 34.70 2.29
361 362 4.434989 CGCCATTGACGTATTCTCGAAAAA 60.435 41.667 0.00 0.00 34.70 1.94
510 513 7.423199 CATCAATTGATGTAGAAACCAGGATG 58.577 38.462 31.74 9.60 45.10 3.51
524 527 3.456277 ACCAGGATGTGTTATCCCTCTTC 59.544 47.826 0.00 0.00 38.98 2.87
525 528 3.713764 CCAGGATGTGTTATCCCTCTTCT 59.286 47.826 2.44 0.00 38.98 2.85
526 529 4.164988 CCAGGATGTGTTATCCCTCTTCTT 59.835 45.833 2.44 0.00 38.98 2.52
527 530 5.339530 CCAGGATGTGTTATCCCTCTTCTTT 60.340 44.000 2.44 0.00 38.98 2.52
528 531 6.183347 CAGGATGTGTTATCCCTCTTCTTTT 58.817 40.000 2.44 0.00 38.98 2.27
529 532 6.660949 CAGGATGTGTTATCCCTCTTCTTTTT 59.339 38.462 2.44 0.00 38.98 1.94
530 533 6.660949 AGGATGTGTTATCCCTCTTCTTTTTG 59.339 38.462 2.44 0.00 38.98 2.44
531 534 6.127619 GGATGTGTTATCCCTCTTCTTTTTGG 60.128 42.308 0.00 0.00 32.09 3.28
532 535 5.947663 TGTGTTATCCCTCTTCTTTTTGGA 58.052 37.500 0.00 0.00 0.00 3.53
533 536 6.003950 TGTGTTATCCCTCTTCTTTTTGGAG 58.996 40.000 0.00 0.00 0.00 3.86
534 537 6.183361 TGTGTTATCCCTCTTCTTTTTGGAGA 60.183 38.462 0.00 0.00 0.00 3.71
535 538 6.372937 GTGTTATCCCTCTTCTTTTTGGAGAG 59.627 42.308 0.00 0.00 0.00 3.20
540 543 5.548056 TCCCTCTTCTTTTTGGAGAGTATGT 59.452 40.000 0.00 0.00 0.00 2.29
551 554 6.732896 TTGGAGAGTATGTTATCCCTCTTC 57.267 41.667 0.00 0.00 34.54 2.87
566 569 6.451064 TCCCTCTTCTCAAAACAAGAAAAC 57.549 37.500 0.00 0.00 32.60 2.43
574 577 6.463360 TCTCAAAACAAGAAAACAAAAGGCT 58.537 32.000 0.00 0.00 0.00 4.58
576 579 6.226787 TCAAAACAAGAAAACAAAAGGCTGA 58.773 32.000 0.00 0.00 0.00 4.26
591 594 1.467342 GGCTGAAACGTGAACCATACC 59.533 52.381 0.00 0.00 0.00 2.73
604 620 1.223487 CATACCCCCTCCAACGTGG 59.777 63.158 0.00 0.00 39.43 4.94
605 621 1.229723 ATACCCCCTCCAACGTGGT 60.230 57.895 0.00 0.00 39.03 4.16
615 631 1.024579 CCAACGTGGTGATAGTGGCC 61.025 60.000 0.00 0.00 31.35 5.36
623 639 2.292918 TGGTGATAGTGGCCTAGTCCTT 60.293 50.000 3.32 0.00 0.00 3.36
625 641 2.103263 GTGATAGTGGCCTAGTCCTTGG 59.897 54.545 3.32 0.00 0.00 3.61
633 649 3.391296 TGGCCTAGTCCTTGGAATGATAC 59.609 47.826 3.32 0.00 0.00 2.24
707 734 7.056635 AGTTGTAATATATCAGCCAGCAAAGT 58.943 34.615 0.00 0.00 0.00 2.66
810 846 4.088648 CACGCCGTCAATTTGTTAATCTC 58.911 43.478 0.00 0.00 0.00 2.75
874 910 3.749226 GGAAGGGATTCTCCTGCTAATG 58.251 50.000 0.00 0.00 37.20 1.90
876 912 4.348168 GGAAGGGATTCTCCTGCTAATGTA 59.652 45.833 0.00 0.00 37.20 2.29
877 913 5.013599 GGAAGGGATTCTCCTGCTAATGTAT 59.986 44.000 0.00 0.00 37.20 2.29
878 914 5.495926 AGGGATTCTCCTGCTAATGTATG 57.504 43.478 0.00 0.00 36.57 2.39
879 915 4.910304 AGGGATTCTCCTGCTAATGTATGT 59.090 41.667 0.00 0.00 36.57 2.29
880 916 5.370880 AGGGATTCTCCTGCTAATGTATGTT 59.629 40.000 0.00 0.00 36.57 2.71
881 917 5.703130 GGGATTCTCCTGCTAATGTATGTTC 59.297 44.000 0.00 0.00 36.57 3.18
882 918 6.291377 GGATTCTCCTGCTAATGTATGTTCA 58.709 40.000 0.00 0.00 32.53 3.18
902 938 2.076207 ATCTATGCAAAGCCATGCCA 57.924 45.000 8.67 0.00 45.83 4.92
919 955 1.010419 CCATTTGCGCTTCACTTGGC 61.010 55.000 9.73 0.00 0.00 4.52
1374 1441 3.304928 GCATCCACCAAGTTTTCTCTGTG 60.305 47.826 0.00 0.00 33.77 3.66
1600 1676 3.472943 GAGCATCTGCCCGCTGGAT 62.473 63.158 0.00 0.00 43.38 3.41
1799 1884 3.485216 GCGTGCACCATTGATTGTACTAC 60.485 47.826 12.15 0.00 0.00 2.73
1812 1897 8.997621 TTGATTGTACTACCATTAACACTCTC 57.002 34.615 0.00 0.00 0.00 3.20
1815 1900 6.276832 TGTACTACCATTAACACTCTCACC 57.723 41.667 0.00 0.00 0.00 4.02
1816 1901 4.451629 ACTACCATTAACACTCTCACCG 57.548 45.455 0.00 0.00 0.00 4.94
1823 1916 7.208080 ACCATTAACACTCTCACCGTATTATC 58.792 38.462 0.00 0.00 0.00 1.75
2062 2155 3.077359 CAAAAGACAAAGGCGATCCTCT 58.923 45.455 0.00 0.00 43.40 3.69
2166 2259 1.569479 GCGTGCAGGAACCTCAACTC 61.569 60.000 11.29 0.00 0.00 3.01
2256 2349 3.322501 TGGAGCTGCCATCCTCTAA 57.677 52.632 1.53 0.00 43.33 2.10
2257 2350 1.811778 TGGAGCTGCCATCCTCTAAT 58.188 50.000 1.53 0.00 43.33 1.73
2258 2351 2.976440 TGGAGCTGCCATCCTCTAATA 58.024 47.619 1.53 0.00 43.33 0.98
2259 2352 2.902486 TGGAGCTGCCATCCTCTAATAG 59.098 50.000 1.53 0.00 43.33 1.73
2260 2353 2.235898 GGAGCTGCCATCCTCTAATAGG 59.764 54.545 0.00 0.00 41.10 2.57
2262 2355 7.950487 TGGAGCTGCCATCCTCTAATAGGAA 62.950 48.000 1.53 0.00 46.73 3.36
2275 2368 7.569639 CTCTAATAGGAAAAGGGGCTTTTAC 57.430 40.000 0.00 0.00 42.72 2.01
2285 2378 0.323999 GGGCTTTTACCCCGGTTCAT 60.324 55.000 0.00 0.00 45.00 2.57
2300 2393 3.604875 GTTCATGAACCGGGACTAGAA 57.395 47.619 25.26 1.16 35.36 2.10
2331 2424 2.198334 ATGCCCTAGCCCTTTAGTCT 57.802 50.000 0.00 0.00 38.69 3.24
2575 2691 8.147704 GCTAATTAATAGAGAGAAGTGCCTCTT 58.852 37.037 0.00 0.00 43.11 2.85
3183 3303 9.667107 CCACTTTACAAGAAATAGAGGTCAATA 57.333 33.333 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.281208 CTTTCGCCCGGACAACCA 60.281 61.111 0.73 0.00 35.59 3.67
4 5 3.733960 GCTTTCGCCCGGACAACC 61.734 66.667 0.73 0.00 0.00 3.77
5 6 2.975799 TGCTTTCGCCCGGACAAC 60.976 61.111 0.73 0.00 34.43 3.32
8 9 2.668550 AAGTGCTTTCGCCCGGAC 60.669 61.111 0.73 0.00 34.43 4.79
9 10 2.358247 GAAGTGCTTTCGCCCGGA 60.358 61.111 0.73 0.00 34.43 5.14
10 11 3.431725 GGAAGTGCTTTCGCCCGG 61.432 66.667 0.00 0.00 36.62 5.73
11 12 2.668212 TGGAAGTGCTTTCGCCCG 60.668 61.111 0.00 0.00 36.62 6.13
12 13 1.452145 TTGTGGAAGTGCTTTCGCCC 61.452 55.000 1.77 0.00 36.62 6.13
13 14 0.040067 CTTGTGGAAGTGCTTTCGCC 60.040 55.000 1.77 0.00 36.62 5.54
14 15 0.040067 CCTTGTGGAAGTGCTTTCGC 60.040 55.000 0.00 0.00 36.62 4.70
15 16 0.040067 GCCTTGTGGAAGTGCTTTCG 60.040 55.000 0.00 0.00 36.62 3.46
16 17 1.032014 TGCCTTGTGGAAGTGCTTTC 58.968 50.000 0.00 0.00 34.57 2.62
17 18 0.746659 GTGCCTTGTGGAAGTGCTTT 59.253 50.000 0.00 0.00 34.57 3.51
18 19 0.395586 TGTGCCTTGTGGAAGTGCTT 60.396 50.000 0.00 0.00 34.57 3.91
19 20 0.395586 TTGTGCCTTGTGGAAGTGCT 60.396 50.000 0.00 0.00 34.57 4.40
20 21 0.459489 TTTGTGCCTTGTGGAAGTGC 59.541 50.000 0.00 0.00 34.57 4.40
21 22 2.957491 TTTTGTGCCTTGTGGAAGTG 57.043 45.000 0.00 0.00 34.57 3.16
38 39 3.642141 ACCAATGTGTCACCCTCTTTTT 58.358 40.909 0.00 0.00 0.00 1.94
39 40 3.312736 ACCAATGTGTCACCCTCTTTT 57.687 42.857 0.00 0.00 0.00 2.27
40 41 4.447138 TTACCAATGTGTCACCCTCTTT 57.553 40.909 0.00 0.00 0.00 2.52
41 42 4.289672 AGATTACCAATGTGTCACCCTCTT 59.710 41.667 0.00 0.00 0.00 2.85
42 43 3.846588 AGATTACCAATGTGTCACCCTCT 59.153 43.478 0.00 0.00 0.00 3.69
43 44 4.222124 AGATTACCAATGTGTCACCCTC 57.778 45.455 0.00 0.00 0.00 4.30
44 45 4.335416 CAAGATTACCAATGTGTCACCCT 58.665 43.478 0.00 0.00 0.00 4.34
45 46 3.443681 CCAAGATTACCAATGTGTCACCC 59.556 47.826 0.00 0.00 0.00 4.61
46 47 4.079253 ACCAAGATTACCAATGTGTCACC 58.921 43.478 0.00 0.00 0.00 4.02
47 48 4.082787 CCACCAAGATTACCAATGTGTCAC 60.083 45.833 0.00 0.00 0.00 3.67
48 49 4.078537 CCACCAAGATTACCAATGTGTCA 58.921 43.478 0.00 0.00 0.00 3.58
49 50 3.119495 GCCACCAAGATTACCAATGTGTC 60.119 47.826 0.00 0.00 0.00 3.67
50 51 2.825532 GCCACCAAGATTACCAATGTGT 59.174 45.455 0.00 0.00 0.00 3.72
51 52 2.166254 GGCCACCAAGATTACCAATGTG 59.834 50.000 0.00 0.00 0.00 3.21
52 53 2.042979 AGGCCACCAAGATTACCAATGT 59.957 45.455 5.01 0.00 0.00 2.71
53 54 2.428171 CAGGCCACCAAGATTACCAATG 59.572 50.000 5.01 0.00 0.00 2.82
54 55 2.042979 ACAGGCCACCAAGATTACCAAT 59.957 45.455 5.01 0.00 0.00 3.16
55 56 1.427368 ACAGGCCACCAAGATTACCAA 59.573 47.619 5.01 0.00 0.00 3.67
56 57 1.072266 ACAGGCCACCAAGATTACCA 58.928 50.000 5.01 0.00 0.00 3.25
57 58 1.463674 CACAGGCCACCAAGATTACC 58.536 55.000 5.01 0.00 0.00 2.85
58 59 0.811281 GCACAGGCCACCAAGATTAC 59.189 55.000 5.01 0.00 0.00 1.89
59 60 0.698238 AGCACAGGCCACCAAGATTA 59.302 50.000 5.01 0.00 42.56 1.75
60 61 0.610232 GAGCACAGGCCACCAAGATT 60.610 55.000 5.01 0.00 42.56 2.40
61 62 1.001641 GAGCACAGGCCACCAAGAT 60.002 57.895 5.01 0.00 42.56 2.40
62 63 2.149383 AGAGCACAGGCCACCAAGA 61.149 57.895 5.01 0.00 42.56 3.02
63 64 1.970114 CAGAGCACAGGCCACCAAG 60.970 63.158 5.01 0.00 42.56 3.61
64 65 2.113774 CAGAGCACAGGCCACCAA 59.886 61.111 5.01 0.00 42.56 3.67
65 66 3.170672 ACAGAGCACAGGCCACCA 61.171 61.111 5.01 0.00 42.56 4.17
66 67 2.670934 CACAGAGCACAGGCCACC 60.671 66.667 5.01 0.00 42.56 4.61
67 68 2.670934 CCACAGAGCACAGGCCAC 60.671 66.667 5.01 0.00 42.56 5.01
68 69 2.401699 CTTCCACAGAGCACAGGCCA 62.402 60.000 5.01 0.00 42.56 5.36
69 70 1.673665 CTTCCACAGAGCACAGGCC 60.674 63.158 0.00 0.00 42.56 5.19
70 71 2.331132 GCTTCCACAGAGCACAGGC 61.331 63.158 0.00 0.00 39.89 4.85
71 72 0.954449 CTGCTTCCACAGAGCACAGG 60.954 60.000 0.00 0.00 44.63 4.00
72 73 1.575576 GCTGCTTCCACAGAGCACAG 61.576 60.000 0.00 0.00 44.63 3.66
73 74 1.598962 GCTGCTTCCACAGAGCACA 60.599 57.895 0.00 0.00 44.63 4.57
74 75 2.675056 CGCTGCTTCCACAGAGCAC 61.675 63.158 0.00 0.00 44.63 4.40
77 78 1.303799 ATTGCGCTGCTTCCACAGAG 61.304 55.000 9.73 0.00 40.25 3.35
78 79 1.302752 ATTGCGCTGCTTCCACAGA 60.303 52.632 9.73 0.00 40.25 3.41
79 80 1.154093 CATTGCGCTGCTTCCACAG 60.154 57.895 9.73 0.00 40.80 3.66
80 81 1.898094 ACATTGCGCTGCTTCCACA 60.898 52.632 9.73 0.00 0.00 4.17
81 82 1.443194 CACATTGCGCTGCTTCCAC 60.443 57.895 9.73 0.00 0.00 4.02
82 83 1.579964 CTCACATTGCGCTGCTTCCA 61.580 55.000 9.73 0.00 0.00 3.53
83 84 1.136147 CTCACATTGCGCTGCTTCC 59.864 57.895 9.73 0.00 0.00 3.46
84 85 1.136147 CCTCACATTGCGCTGCTTC 59.864 57.895 9.73 0.00 0.00 3.86
85 86 2.338015 CCCTCACATTGCGCTGCTT 61.338 57.895 9.73 0.00 0.00 3.91
86 87 2.749044 CCCTCACATTGCGCTGCT 60.749 61.111 9.73 0.00 0.00 4.24
87 88 3.058160 ACCCTCACATTGCGCTGC 61.058 61.111 9.73 0.00 0.00 5.25
88 89 1.518056 AACACCCTCACATTGCGCTG 61.518 55.000 9.73 0.99 0.00 5.18
89 90 1.228245 AACACCCTCACATTGCGCT 60.228 52.632 9.73 0.00 0.00 5.92
90 91 1.210155 GAACACCCTCACATTGCGC 59.790 57.895 0.00 0.00 0.00 6.09
91 92 0.950836 TTGAACACCCTCACATTGCG 59.049 50.000 0.00 0.00 0.00 4.85
92 93 1.000274 GGTTGAACACCCTCACATTGC 60.000 52.381 0.00 0.00 40.19 3.56
93 94 2.294233 CTGGTTGAACACCCTCACATTG 59.706 50.000 0.00 0.00 46.68 2.82
94 95 2.174639 TCTGGTTGAACACCCTCACATT 59.825 45.455 0.00 0.00 46.68 2.71
95 96 1.774254 TCTGGTTGAACACCCTCACAT 59.226 47.619 0.00 0.00 46.68 3.21
96 97 1.134220 GTCTGGTTGAACACCCTCACA 60.134 52.381 0.00 0.00 46.68 3.58
97 98 1.134220 TGTCTGGTTGAACACCCTCAC 60.134 52.381 0.00 0.00 46.68 3.51
98 99 1.208706 TGTCTGGTTGAACACCCTCA 58.791 50.000 0.00 0.00 46.68 3.86
99 100 2.341846 TTGTCTGGTTGAACACCCTC 57.658 50.000 0.00 0.00 46.68 4.30
100 101 2.375146 GTTTGTCTGGTTGAACACCCT 58.625 47.619 0.00 0.00 46.68 4.34
101 102 1.407618 GGTTTGTCTGGTTGAACACCC 59.592 52.381 0.00 0.00 46.68 4.61
103 104 3.192633 ACTTGGTTTGTCTGGTTGAACAC 59.807 43.478 0.00 0.00 0.00 3.32
104 105 3.192422 CACTTGGTTTGTCTGGTTGAACA 59.808 43.478 0.00 0.00 0.00 3.18
105 106 3.769536 CACTTGGTTTGTCTGGTTGAAC 58.230 45.455 0.00 0.00 0.00 3.18
106 107 2.165437 GCACTTGGTTTGTCTGGTTGAA 59.835 45.455 0.00 0.00 0.00 2.69
107 108 1.748493 GCACTTGGTTTGTCTGGTTGA 59.252 47.619 0.00 0.00 0.00 3.18
108 109 1.750778 AGCACTTGGTTTGTCTGGTTG 59.249 47.619 0.00 0.00 0.00 3.77
109 110 2.143876 AGCACTTGGTTTGTCTGGTT 57.856 45.000 0.00 0.00 0.00 3.67
110 111 2.851195 CTAGCACTTGGTTTGTCTGGT 58.149 47.619 0.00 0.00 0.00 4.00
111 112 1.537202 GCTAGCACTTGGTTTGTCTGG 59.463 52.381 10.63 0.00 0.00 3.86
112 113 1.195448 CGCTAGCACTTGGTTTGTCTG 59.805 52.381 16.45 0.00 0.00 3.51
113 114 1.512926 CGCTAGCACTTGGTTTGTCT 58.487 50.000 16.45 0.00 0.00 3.41
114 115 0.517316 CCGCTAGCACTTGGTTTGTC 59.483 55.000 16.45 0.00 0.00 3.18
115 116 1.515521 GCCGCTAGCACTTGGTTTGT 61.516 55.000 16.45 0.00 42.97 2.83
116 117 1.210155 GCCGCTAGCACTTGGTTTG 59.790 57.895 16.45 0.00 42.97 2.93
117 118 2.325082 CGCCGCTAGCACTTGGTTT 61.325 57.895 16.45 0.00 44.04 3.27
118 119 2.742372 CGCCGCTAGCACTTGGTT 60.742 61.111 16.45 0.00 44.04 3.67
133 134 3.202690 GATGTGTGAGATCGCGCGC 62.203 63.158 27.95 23.91 39.53 6.86
134 135 0.317020 TAGATGTGTGAGATCGCGCG 60.317 55.000 26.76 26.76 39.53 6.86
135 136 1.840181 TTAGATGTGTGAGATCGCGC 58.160 50.000 0.00 0.00 37.38 6.86
136 137 5.193216 CAAAATTAGATGTGTGAGATCGCG 58.807 41.667 0.00 0.00 0.00 5.87
137 138 4.966366 GCAAAATTAGATGTGTGAGATCGC 59.034 41.667 0.00 0.00 0.00 4.58
138 139 6.110543 TGCAAAATTAGATGTGTGAGATCG 57.889 37.500 0.00 0.00 0.00 3.69
139 140 6.317140 TCCTGCAAAATTAGATGTGTGAGATC 59.683 38.462 0.00 0.00 0.00 2.75
140 141 6.182627 TCCTGCAAAATTAGATGTGTGAGAT 58.817 36.000 0.00 0.00 0.00 2.75
141 142 5.559770 TCCTGCAAAATTAGATGTGTGAGA 58.440 37.500 0.00 0.00 0.00 3.27
142 143 5.645067 TCTCCTGCAAAATTAGATGTGTGAG 59.355 40.000 0.00 0.00 0.00 3.51
143 144 5.559770 TCTCCTGCAAAATTAGATGTGTGA 58.440 37.500 0.00 0.00 0.00 3.58
144 145 5.885230 TCTCCTGCAAAATTAGATGTGTG 57.115 39.130 0.00 0.00 0.00 3.82
145 146 7.112122 TGTATCTCCTGCAAAATTAGATGTGT 58.888 34.615 0.00 0.00 0.00 3.72
146 147 7.558161 TGTATCTCCTGCAAAATTAGATGTG 57.442 36.000 0.00 0.00 0.00 3.21
147 148 8.049117 TCTTGTATCTCCTGCAAAATTAGATGT 58.951 33.333 0.00 0.00 0.00 3.06
148 149 8.442632 TCTTGTATCTCCTGCAAAATTAGATG 57.557 34.615 0.00 0.00 0.00 2.90
149 150 8.270744 ACTCTTGTATCTCCTGCAAAATTAGAT 58.729 33.333 0.00 0.00 0.00 1.98
150 151 7.550551 CACTCTTGTATCTCCTGCAAAATTAGA 59.449 37.037 0.00 0.00 0.00 2.10
151 152 7.201679 CCACTCTTGTATCTCCTGCAAAATTAG 60.202 40.741 0.00 0.00 0.00 1.73
152 153 6.599244 CCACTCTTGTATCTCCTGCAAAATTA 59.401 38.462 0.00 0.00 0.00 1.40
153 154 5.416952 CCACTCTTGTATCTCCTGCAAAATT 59.583 40.000 0.00 0.00 0.00 1.82
154 155 4.946157 CCACTCTTGTATCTCCTGCAAAAT 59.054 41.667 0.00 0.00 0.00 1.82
155 156 4.041567 TCCACTCTTGTATCTCCTGCAAAA 59.958 41.667 0.00 0.00 0.00 2.44
156 157 3.582647 TCCACTCTTGTATCTCCTGCAAA 59.417 43.478 0.00 0.00 0.00 3.68
157 158 3.173151 TCCACTCTTGTATCTCCTGCAA 58.827 45.455 0.00 0.00 0.00 4.08
158 159 2.762887 CTCCACTCTTGTATCTCCTGCA 59.237 50.000 0.00 0.00 0.00 4.41
159 160 2.102252 CCTCCACTCTTGTATCTCCTGC 59.898 54.545 0.00 0.00 0.00 4.85
160 161 3.383185 GTCCTCCACTCTTGTATCTCCTG 59.617 52.174 0.00 0.00 0.00 3.86
161 162 3.011821 TGTCCTCCACTCTTGTATCTCCT 59.988 47.826 0.00 0.00 0.00 3.69
162 163 3.366396 TGTCCTCCACTCTTGTATCTCC 58.634 50.000 0.00 0.00 0.00 3.71
163 164 3.181480 GCTGTCCTCCACTCTTGTATCTC 60.181 52.174 0.00 0.00 0.00 2.75
164 165 2.763448 GCTGTCCTCCACTCTTGTATCT 59.237 50.000 0.00 0.00 0.00 1.98
165 166 2.497675 TGCTGTCCTCCACTCTTGTATC 59.502 50.000 0.00 0.00 0.00 2.24
166 167 2.540383 TGCTGTCCTCCACTCTTGTAT 58.460 47.619 0.00 0.00 0.00 2.29
167 168 2.009681 TGCTGTCCTCCACTCTTGTA 57.990 50.000 0.00 0.00 0.00 2.41
168 169 1.002888 CATGCTGTCCTCCACTCTTGT 59.997 52.381 0.00 0.00 0.00 3.16
169 170 1.678123 CCATGCTGTCCTCCACTCTTG 60.678 57.143 0.00 0.00 0.00 3.02
170 171 0.617413 CCATGCTGTCCTCCACTCTT 59.383 55.000 0.00 0.00 0.00 2.85
171 172 1.270414 CCCATGCTGTCCTCCACTCT 61.270 60.000 0.00 0.00 0.00 3.24
172 173 1.222936 CCCATGCTGTCCTCCACTC 59.777 63.158 0.00 0.00 0.00 3.51
173 174 0.252696 TACCCATGCTGTCCTCCACT 60.253 55.000 0.00 0.00 0.00 4.00
174 175 0.179000 CTACCCATGCTGTCCTCCAC 59.821 60.000 0.00 0.00 0.00 4.02
175 176 0.982852 CCTACCCATGCTGTCCTCCA 60.983 60.000 0.00 0.00 0.00 3.86
176 177 0.691078 TCCTACCCATGCTGTCCTCC 60.691 60.000 0.00 0.00 0.00 4.30
177 178 0.755686 CTCCTACCCATGCTGTCCTC 59.244 60.000 0.00 0.00 0.00 3.71
178 179 0.043334 ACTCCTACCCATGCTGTCCT 59.957 55.000 0.00 0.00 0.00 3.85
179 180 0.179000 CACTCCTACCCATGCTGTCC 59.821 60.000 0.00 0.00 0.00 4.02
180 181 0.179000 CCACTCCTACCCATGCTGTC 59.821 60.000 0.00 0.00 0.00 3.51
181 182 0.547712 ACCACTCCTACCCATGCTGT 60.548 55.000 0.00 0.00 0.00 4.40
182 183 1.414181 CTACCACTCCTACCCATGCTG 59.586 57.143 0.00 0.00 0.00 4.41
183 184 1.692762 CCTACCACTCCTACCCATGCT 60.693 57.143 0.00 0.00 0.00 3.79
184 185 0.759346 CCTACCACTCCTACCCATGC 59.241 60.000 0.00 0.00 0.00 4.06
185 186 1.344087 ACCCTACCACTCCTACCCATG 60.344 57.143 0.00 0.00 0.00 3.66
186 187 1.024536 ACCCTACCACTCCTACCCAT 58.975 55.000 0.00 0.00 0.00 4.00
187 188 0.794934 AACCCTACCACTCCTACCCA 59.205 55.000 0.00 0.00 0.00 4.51
188 189 1.201424 CAACCCTACCACTCCTACCC 58.799 60.000 0.00 0.00 0.00 3.69
189 190 0.540454 GCAACCCTACCACTCCTACC 59.460 60.000 0.00 0.00 0.00 3.18
190 191 1.272807 TGCAACCCTACCACTCCTAC 58.727 55.000 0.00 0.00 0.00 3.18
191 192 1.626825 GTTGCAACCCTACCACTCCTA 59.373 52.381 19.15 0.00 0.00 2.94
192 193 0.400594 GTTGCAACCCTACCACTCCT 59.599 55.000 19.15 0.00 0.00 3.69
193 194 0.953960 CGTTGCAACCCTACCACTCC 60.954 60.000 23.42 0.00 0.00 3.85
194 195 0.250166 ACGTTGCAACCCTACCACTC 60.250 55.000 23.42 0.00 0.00 3.51
195 196 0.181824 AACGTTGCAACCCTACCACT 59.818 50.000 23.42 0.00 0.00 4.00
196 197 1.026584 AAACGTTGCAACCCTACCAC 58.973 50.000 23.42 0.00 0.00 4.16
197 198 1.405821 CAAAACGTTGCAACCCTACCA 59.594 47.619 23.42 0.00 0.00 3.25
198 199 1.406180 ACAAAACGTTGCAACCCTACC 59.594 47.619 23.42 0.00 38.39 3.18
199 200 2.097791 TCACAAAACGTTGCAACCCTAC 59.902 45.455 23.42 0.00 38.39 3.18
200 201 2.356382 CTCACAAAACGTTGCAACCCTA 59.644 45.455 23.42 0.63 38.39 3.53
201 202 1.134175 CTCACAAAACGTTGCAACCCT 59.866 47.619 23.42 8.10 38.39 4.34
202 203 1.133407 TCTCACAAAACGTTGCAACCC 59.867 47.619 23.42 0.00 38.39 4.11
203 204 2.553079 TCTCACAAAACGTTGCAACC 57.447 45.000 23.42 6.48 38.39 3.77
204 205 3.917985 ACTTTCTCACAAAACGTTGCAAC 59.082 39.130 19.89 19.89 38.39 4.17
205 206 4.167554 ACTTTCTCACAAAACGTTGCAA 57.832 36.364 0.00 0.00 38.39 4.08
206 207 3.840890 ACTTTCTCACAAAACGTTGCA 57.159 38.095 0.00 0.00 38.39 4.08
207 208 4.905269 ACTACTTTCTCACAAAACGTTGC 58.095 39.130 0.00 0.00 38.39 4.17
208 209 6.345920 AGACTACTTTCTCACAAAACGTTG 57.654 37.500 0.00 0.00 40.84 4.10
209 210 6.980051 AAGACTACTTTCTCACAAAACGTT 57.020 33.333 0.00 0.00 31.71 3.99
210 211 6.980051 AAAGACTACTTTCTCACAAAACGT 57.020 33.333 0.00 0.00 41.80 3.99
211 212 7.241376 ACAAAAGACTACTTTCTCACAAAACG 58.759 34.615 0.00 0.00 44.32 3.60
216 217 8.836413 CCAAATACAAAAGACTACTTTCTCACA 58.164 33.333 0.00 0.00 44.32 3.58
217 218 8.837389 ACCAAATACAAAAGACTACTTTCTCAC 58.163 33.333 0.00 0.00 44.32 3.51
218 219 8.974060 ACCAAATACAAAAGACTACTTTCTCA 57.026 30.769 0.00 0.00 44.32 3.27
224 225 9.623000 ACAAACTACCAAATACAAAAGACTACT 57.377 29.630 0.00 0.00 0.00 2.57
227 228 8.745590 ACAACAAACTACCAAATACAAAAGACT 58.254 29.630 0.00 0.00 0.00 3.24
228 229 8.803799 CACAACAAACTACCAAATACAAAAGAC 58.196 33.333 0.00 0.00 0.00 3.01
229 230 7.976734 CCACAACAAACTACCAAATACAAAAGA 59.023 33.333 0.00 0.00 0.00 2.52
230 231 7.976734 TCCACAACAAACTACCAAATACAAAAG 59.023 33.333 0.00 0.00 0.00 2.27
231 232 7.837863 TCCACAACAAACTACCAAATACAAAA 58.162 30.769 0.00 0.00 0.00 2.44
232 233 7.406031 TCCACAACAAACTACCAAATACAAA 57.594 32.000 0.00 0.00 0.00 2.83
233 234 7.068839 ACATCCACAACAAACTACCAAATACAA 59.931 33.333 0.00 0.00 0.00 2.41
234 235 6.547880 ACATCCACAACAAACTACCAAATACA 59.452 34.615 0.00 0.00 0.00 2.29
235 236 6.861055 CACATCCACAACAAACTACCAAATAC 59.139 38.462 0.00 0.00 0.00 1.89
236 237 6.547880 ACACATCCACAACAAACTACCAAATA 59.452 34.615 0.00 0.00 0.00 1.40
237 238 5.362430 ACACATCCACAACAAACTACCAAAT 59.638 36.000 0.00 0.00 0.00 2.32
238 239 4.707448 ACACATCCACAACAAACTACCAAA 59.293 37.500 0.00 0.00 0.00 3.28
239 240 4.274147 ACACATCCACAACAAACTACCAA 58.726 39.130 0.00 0.00 0.00 3.67
240 241 3.892284 ACACATCCACAACAAACTACCA 58.108 40.909 0.00 0.00 0.00 3.25
241 242 4.097286 ACAACACATCCACAACAAACTACC 59.903 41.667 0.00 0.00 0.00 3.18
242 243 5.243426 ACAACACATCCACAACAAACTAC 57.757 39.130 0.00 0.00 0.00 2.73
243 244 7.421599 CAATACAACACATCCACAACAAACTA 58.578 34.615 0.00 0.00 0.00 2.24
244 245 6.272318 CAATACAACACATCCACAACAAACT 58.728 36.000 0.00 0.00 0.00 2.66
245 246 5.051106 GCAATACAACACATCCACAACAAAC 60.051 40.000 0.00 0.00 0.00 2.93
246 247 5.046529 GCAATACAACACATCCACAACAAA 58.953 37.500 0.00 0.00 0.00 2.83
247 248 4.340666 AGCAATACAACACATCCACAACAA 59.659 37.500 0.00 0.00 0.00 2.83
248 249 3.888323 AGCAATACAACACATCCACAACA 59.112 39.130 0.00 0.00 0.00 3.33
249 250 4.503741 AGCAATACAACACATCCACAAC 57.496 40.909 0.00 0.00 0.00 3.32
250 251 4.582240 TCAAGCAATACAACACATCCACAA 59.418 37.500 0.00 0.00 0.00 3.33
251 252 4.140536 TCAAGCAATACAACACATCCACA 58.859 39.130 0.00 0.00 0.00 4.17
252 253 4.379813 CCTCAAGCAATACAACACATCCAC 60.380 45.833 0.00 0.00 0.00 4.02
253 254 3.758023 CCTCAAGCAATACAACACATCCA 59.242 43.478 0.00 0.00 0.00 3.41
254 255 4.009675 TCCTCAAGCAATACAACACATCC 58.990 43.478 0.00 0.00 0.00 3.51
255 256 4.697352 ACTCCTCAAGCAATACAACACATC 59.303 41.667 0.00 0.00 0.00 3.06
256 257 4.456911 CACTCCTCAAGCAATACAACACAT 59.543 41.667 0.00 0.00 0.00 3.21
257 258 3.814842 CACTCCTCAAGCAATACAACACA 59.185 43.478 0.00 0.00 0.00 3.72
258 259 3.815401 ACACTCCTCAAGCAATACAACAC 59.185 43.478 0.00 0.00 0.00 3.32
259 260 4.085357 ACACTCCTCAAGCAATACAACA 57.915 40.909 0.00 0.00 0.00 3.33
260 261 4.377431 CGAACACTCCTCAAGCAATACAAC 60.377 45.833 0.00 0.00 0.00 3.32
261 262 3.745975 CGAACACTCCTCAAGCAATACAA 59.254 43.478 0.00 0.00 0.00 2.41
262 263 3.325870 CGAACACTCCTCAAGCAATACA 58.674 45.455 0.00 0.00 0.00 2.29
263 264 2.094417 GCGAACACTCCTCAAGCAATAC 59.906 50.000 0.00 0.00 0.00 1.89
264 265 2.289382 TGCGAACACTCCTCAAGCAATA 60.289 45.455 0.00 0.00 0.00 1.90
265 266 1.160137 GCGAACACTCCTCAAGCAAT 58.840 50.000 0.00 0.00 0.00 3.56
266 267 0.179059 TGCGAACACTCCTCAAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
267 268 0.035317 ATGCGAACACTCCTCAAGCA 59.965 50.000 0.00 0.00 37.54 3.91
268 269 0.445436 CATGCGAACACTCCTCAAGC 59.555 55.000 0.00 0.00 0.00 4.01
269 270 1.728971 GACATGCGAACACTCCTCAAG 59.271 52.381 0.00 0.00 0.00 3.02
270 271 1.608025 GGACATGCGAACACTCCTCAA 60.608 52.381 0.00 0.00 0.00 3.02
271 272 0.037326 GGACATGCGAACACTCCTCA 60.037 55.000 0.00 0.00 0.00 3.86
272 273 0.247736 AGGACATGCGAACACTCCTC 59.752 55.000 0.00 0.00 32.92 3.71
273 274 0.687354 AAGGACATGCGAACACTCCT 59.313 50.000 0.00 0.00 37.75 3.69
274 275 2.380084 TAAGGACATGCGAACACTCC 57.620 50.000 0.00 0.00 0.00 3.85
275 276 3.326747 ACTTAAGGACATGCGAACACTC 58.673 45.455 7.53 0.00 0.00 3.51
276 277 3.402628 ACTTAAGGACATGCGAACACT 57.597 42.857 7.53 0.00 0.00 3.55
277 278 4.213482 AGAAACTTAAGGACATGCGAACAC 59.787 41.667 7.53 0.00 0.00 3.32
278 279 4.385825 AGAAACTTAAGGACATGCGAACA 58.614 39.130 7.53 0.00 0.00 3.18
279 280 5.147162 CAAGAAACTTAAGGACATGCGAAC 58.853 41.667 7.53 0.00 0.00 3.95
280 281 4.819630 ACAAGAAACTTAAGGACATGCGAA 59.180 37.500 7.53 0.00 0.00 4.70
281 282 4.385825 ACAAGAAACTTAAGGACATGCGA 58.614 39.130 7.53 0.00 0.00 5.10
282 283 4.749245 ACAAGAAACTTAAGGACATGCG 57.251 40.909 7.53 0.00 0.00 4.73
283 284 9.556030 GTATTTACAAGAAACTTAAGGACATGC 57.444 33.333 7.53 0.00 0.00 4.06
284 285 9.755064 CGTATTTACAAGAAACTTAAGGACATG 57.245 33.333 7.53 3.89 0.00 3.21
285 286 9.498176 ACGTATTTACAAGAAACTTAAGGACAT 57.502 29.630 7.53 0.00 0.00 3.06
286 287 8.891671 ACGTATTTACAAGAAACTTAAGGACA 57.108 30.769 7.53 0.00 0.00 4.02
293 294 8.294577 GGGATCAAACGTATTTACAAGAAACTT 58.705 33.333 0.00 0.00 0.00 2.66
294 295 7.664318 AGGGATCAAACGTATTTACAAGAAACT 59.336 33.333 0.00 0.00 0.00 2.66
295 296 7.813645 AGGGATCAAACGTATTTACAAGAAAC 58.186 34.615 0.00 0.00 0.00 2.78
296 297 7.989416 AGGGATCAAACGTATTTACAAGAAA 57.011 32.000 0.00 0.00 0.00 2.52
297 298 7.120138 GGAAGGGATCAAACGTATTTACAAGAA 59.880 37.037 0.00 0.00 0.00 2.52
298 299 6.596497 GGAAGGGATCAAACGTATTTACAAGA 59.404 38.462 0.00 0.00 0.00 3.02
299 300 6.373216 TGGAAGGGATCAAACGTATTTACAAG 59.627 38.462 0.00 0.00 0.00 3.16
300 301 6.239396 TGGAAGGGATCAAACGTATTTACAA 58.761 36.000 0.00 0.00 0.00 2.41
301 302 5.806818 TGGAAGGGATCAAACGTATTTACA 58.193 37.500 0.00 0.00 0.00 2.41
302 303 6.937436 ATGGAAGGGATCAAACGTATTTAC 57.063 37.500 0.00 0.00 0.00 2.01
303 304 9.116067 CTTTATGGAAGGGATCAAACGTATTTA 57.884 33.333 0.00 0.00 0.00 1.40
304 305 7.832187 TCTTTATGGAAGGGATCAAACGTATTT 59.168 33.333 0.00 0.00 35.98 1.40
305 306 7.343357 TCTTTATGGAAGGGATCAAACGTATT 58.657 34.615 0.00 0.00 35.98 1.89
306 307 6.895782 TCTTTATGGAAGGGATCAAACGTAT 58.104 36.000 0.00 0.00 35.98 3.06
307 308 6.302535 TCTTTATGGAAGGGATCAAACGTA 57.697 37.500 0.00 0.00 35.98 3.57
308 309 5.174037 TCTTTATGGAAGGGATCAAACGT 57.826 39.130 0.00 0.00 35.98 3.99
309 310 7.041098 CCTTATCTTTATGGAAGGGATCAAACG 60.041 40.741 0.00 0.00 35.74 3.60
310 311 7.780271 ACCTTATCTTTATGGAAGGGATCAAAC 59.220 37.037 4.65 0.00 42.39 2.93
311 312 7.882755 ACCTTATCTTTATGGAAGGGATCAAA 58.117 34.615 4.65 0.00 42.39 2.69
312 313 7.465900 ACCTTATCTTTATGGAAGGGATCAA 57.534 36.000 4.65 0.00 42.39 2.57
313 314 7.256190 CGTACCTTATCTTTATGGAAGGGATCA 60.256 40.741 4.65 0.00 42.39 2.92
314 315 7.097834 CGTACCTTATCTTTATGGAAGGGATC 58.902 42.308 4.65 0.00 42.39 3.36
315 316 6.520231 GCGTACCTTATCTTTATGGAAGGGAT 60.520 42.308 4.65 0.00 42.39 3.85
316 317 5.221581 GCGTACCTTATCTTTATGGAAGGGA 60.222 44.000 4.65 0.00 42.39 4.20
317 318 4.995487 GCGTACCTTATCTTTATGGAAGGG 59.005 45.833 4.65 0.00 42.39 3.95
318 319 4.995487 GGCGTACCTTATCTTTATGGAAGG 59.005 45.833 0.00 0.00 43.49 3.46
319 320 5.607477 TGGCGTACCTTATCTTTATGGAAG 58.393 41.667 0.00 0.00 36.63 3.46
320 321 5.617528 TGGCGTACCTTATCTTTATGGAA 57.382 39.130 0.00 0.00 36.63 3.53
321 322 5.818678 ATGGCGTACCTTATCTTTATGGA 57.181 39.130 0.00 0.00 36.63 3.41
322 323 5.995282 TCAATGGCGTACCTTATCTTTATGG 59.005 40.000 0.00 0.00 36.63 2.74
323 324 6.346598 CGTCAATGGCGTACCTTATCTTTATG 60.347 42.308 0.00 0.00 36.63 1.90
324 325 5.694910 CGTCAATGGCGTACCTTATCTTTAT 59.305 40.000 0.00 0.00 36.63 1.40
325 326 5.045215 CGTCAATGGCGTACCTTATCTTTA 58.955 41.667 0.00 0.00 36.63 1.85
326 327 3.869246 CGTCAATGGCGTACCTTATCTTT 59.131 43.478 0.00 0.00 36.63 2.52
327 328 3.118884 ACGTCAATGGCGTACCTTATCTT 60.119 43.478 12.48 0.00 41.06 2.40
328 329 2.429610 ACGTCAATGGCGTACCTTATCT 59.570 45.455 12.48 0.00 41.06 1.98
329 330 2.817901 ACGTCAATGGCGTACCTTATC 58.182 47.619 12.48 0.00 41.06 1.75
330 331 2.973694 ACGTCAATGGCGTACCTTAT 57.026 45.000 12.48 0.00 41.06 1.73
331 332 4.098349 AGAATACGTCAATGGCGTACCTTA 59.902 41.667 22.62 1.71 45.64 2.69
332 333 2.973694 ATACGTCAATGGCGTACCTT 57.026 45.000 22.62 4.08 45.64 3.50
333 334 2.429610 AGAATACGTCAATGGCGTACCT 59.570 45.455 22.62 18.22 45.64 3.08
334 335 2.793232 GAGAATACGTCAATGGCGTACC 59.207 50.000 22.62 16.35 45.64 3.34
335 336 2.466571 CGAGAATACGTCAATGGCGTAC 59.533 50.000 22.62 10.89 45.64 3.67
336 337 2.355444 TCGAGAATACGTCAATGGCGTA 59.645 45.455 22.42 22.42 46.63 4.42
337 338 1.133598 TCGAGAATACGTCAATGGCGT 59.866 47.619 19.02 19.02 45.11 5.68
338 339 1.835121 TCGAGAATACGTCAATGGCG 58.165 50.000 5.42 5.42 34.70 5.69
339 340 4.593597 TTTTCGAGAATACGTCAATGGC 57.406 40.909 0.00 0.00 34.70 4.40
386 387 6.978080 GGCAACAAGAGAGAAAATAACACAAA 59.022 34.615 0.00 0.00 0.00 2.83
497 500 5.036916 AGGGATAACACATCCTGGTTTCTA 58.963 41.667 3.44 0.00 38.26 2.10
505 508 6.394345 AAAAGAAGAGGGATAACACATCCT 57.606 37.500 3.44 0.00 38.26 3.24
510 513 6.238648 TCTCCAAAAAGAAGAGGGATAACAC 58.761 40.000 0.00 0.00 0.00 3.32
524 527 7.569240 AGAGGGATAACATACTCTCCAAAAAG 58.431 38.462 0.00 0.00 35.51 2.27
525 528 7.510675 AGAGGGATAACATACTCTCCAAAAA 57.489 36.000 0.00 0.00 35.51 1.94
526 529 7.403231 AGAAGAGGGATAACATACTCTCCAAAA 59.597 37.037 0.00 0.00 39.25 2.44
527 530 6.903534 AGAAGAGGGATAACATACTCTCCAAA 59.096 38.462 0.00 0.00 39.25 3.28
528 531 6.444704 AGAAGAGGGATAACATACTCTCCAA 58.555 40.000 0.00 0.00 39.25 3.53
529 532 6.031964 AGAAGAGGGATAACATACTCTCCA 57.968 41.667 0.00 0.00 39.25 3.86
530 533 6.071984 TGAGAAGAGGGATAACATACTCTCC 58.928 44.000 0.00 0.00 39.25 3.71
531 534 7.589958 TTGAGAAGAGGGATAACATACTCTC 57.410 40.000 0.00 0.00 39.25 3.20
532 535 7.979786 TTTGAGAAGAGGGATAACATACTCT 57.020 36.000 0.00 0.00 41.77 3.24
533 536 8.041323 TGTTTTGAGAAGAGGGATAACATACTC 58.959 37.037 0.00 0.00 0.00 2.59
534 537 7.918076 TGTTTTGAGAAGAGGGATAACATACT 58.082 34.615 0.00 0.00 0.00 2.12
535 538 8.561738 TTGTTTTGAGAAGAGGGATAACATAC 57.438 34.615 0.00 0.00 0.00 2.39
540 543 8.630037 GTTTTCTTGTTTTGAGAAGAGGGATAA 58.370 33.333 0.00 0.00 34.84 1.75
551 554 6.368516 TCAGCCTTTTGTTTTCTTGTTTTGAG 59.631 34.615 0.00 0.00 0.00 3.02
566 569 2.159310 TGGTTCACGTTTCAGCCTTTTG 60.159 45.455 0.00 0.00 0.00 2.44
574 577 1.271488 GGGGGTATGGTTCACGTTTCA 60.271 52.381 0.00 0.00 0.00 2.69
576 579 1.003928 GAGGGGGTATGGTTCACGTTT 59.996 52.381 0.00 0.00 0.00 3.60
591 594 0.178068 CTATCACCACGTTGGAGGGG 59.822 60.000 10.46 0.00 40.96 4.79
604 620 2.103263 CCAAGGACTAGGCCACTATCAC 59.897 54.545 19.45 0.00 0.00 3.06
605 621 2.023404 TCCAAGGACTAGGCCACTATCA 60.023 50.000 19.45 0.00 0.00 2.15
615 631 5.776173 ACTCGTATCATTCCAAGGACTAG 57.224 43.478 0.00 0.00 0.00 2.57
623 639 3.492656 GCTTGGCTACTCGTATCATTCCA 60.493 47.826 0.00 0.00 0.00 3.53
625 641 3.983741 AGCTTGGCTACTCGTATCATTC 58.016 45.455 0.00 0.00 36.99 2.67
707 734 4.204012 ACATTTCCCGTTGAAGTTCAGAA 58.796 39.130 5.56 3.59 33.63 3.02
810 846 3.051479 TGCACTGCAGCACGATGG 61.051 61.111 15.27 0.00 40.11 3.51
874 910 6.135290 TGGCTTTGCATAGATTGAACATAC 57.865 37.500 8.49 0.00 0.00 2.39
876 912 5.597806 CATGGCTTTGCATAGATTGAACAT 58.402 37.500 8.49 0.00 0.00 2.71
877 913 4.678574 GCATGGCTTTGCATAGATTGAACA 60.679 41.667 8.49 0.00 42.31 3.18
878 914 3.800506 GCATGGCTTTGCATAGATTGAAC 59.199 43.478 8.49 0.00 42.31 3.18
879 915 3.181473 GGCATGGCTTTGCATAGATTGAA 60.181 43.478 12.86 0.00 44.59 2.69
880 916 2.363038 GGCATGGCTTTGCATAGATTGA 59.637 45.455 12.86 0.00 44.59 2.57
881 917 2.101750 TGGCATGGCTTTGCATAGATTG 59.898 45.455 21.08 3.20 44.59 2.67
882 918 2.390696 TGGCATGGCTTTGCATAGATT 58.609 42.857 21.08 0.00 44.59 2.40
902 938 1.290009 GGCCAAGTGAAGCGCAAAT 59.710 52.632 11.47 0.00 0.00 2.32
919 955 4.137543 GCTCCATGTCCCTTTTATAGTGG 58.862 47.826 0.00 0.00 0.00 4.00
1374 1441 1.129437 GCAAGGACATGAACTCGAAGC 59.871 52.381 0.00 0.00 0.00 3.86
1622 1707 0.167470 TCGTTGATCTCGTCGTCCAC 59.833 55.000 9.75 0.00 0.00 4.02
1799 1884 7.434492 AGATAATACGGTGAGAGTGTTAATGG 58.566 38.462 0.00 0.00 30.99 3.16
1815 1900 5.225642 GGTTTCCCGTTCCTAGATAATACG 58.774 45.833 0.00 0.00 0.00 3.06
1816 1901 5.512060 GGGGTTTCCCGTTCCTAGATAATAC 60.512 48.000 0.00 0.00 46.66 1.89
2062 2155 0.666274 CTGTCGCGGTTGCAGTCTAA 60.666 55.000 6.13 0.00 42.97 2.10
2166 2259 1.328439 CGAACTTGTCGGACGAAGAG 58.672 55.000 19.88 11.18 46.45 2.85
2251 2344 6.546403 GGTAAAAGCCCCTTTTCCTATTAGAG 59.454 42.308 6.25 0.00 41.88 2.43
2252 2345 6.429151 GGTAAAAGCCCCTTTTCCTATTAGA 58.571 40.000 6.25 0.00 41.88 2.10
2253 2346 5.597182 GGGTAAAAGCCCCTTTTCCTATTAG 59.403 44.000 6.25 0.00 41.88 1.73
2254 2347 5.521696 GGGTAAAAGCCCCTTTTCCTATTA 58.478 41.667 6.25 0.00 41.88 0.98
2255 2348 4.359105 GGGTAAAAGCCCCTTTTCCTATT 58.641 43.478 6.25 0.00 41.88 1.73
2256 2349 3.990369 GGGTAAAAGCCCCTTTTCCTAT 58.010 45.455 6.25 0.00 41.88 2.57
2257 2350 3.461378 GGGTAAAAGCCCCTTTTCCTA 57.539 47.619 6.25 0.00 41.88 2.94
2258 2351 2.320681 GGGTAAAAGCCCCTTTTCCT 57.679 50.000 6.25 0.00 41.88 3.36
2267 2360 0.815095 CATGAACCGGGGTAAAAGCC 59.185 55.000 6.32 0.00 34.31 4.35
2268 2361 1.828979 TCATGAACCGGGGTAAAAGC 58.171 50.000 6.32 0.00 0.00 3.51
2269 2362 3.842732 GTTCATGAACCGGGGTAAAAG 57.157 47.619 25.26 0.00 35.36 2.27
2285 2378 1.553706 GACCTTCTAGTCCCGGTTCA 58.446 55.000 0.00 0.00 0.00 3.18
2298 2391 3.538634 AGGGCATTAGTAACGACCTTC 57.461 47.619 0.00 0.00 0.00 3.46
2300 2393 2.364647 GCTAGGGCATTAGTAACGACCT 59.635 50.000 8.71 8.71 38.54 3.85
2575 2691 2.991190 GTCGACAAAGCACGGAGATAAA 59.009 45.455 11.55 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.