Multiple sequence alignment - TraesCS5D01G103100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G103100 chr5D 100.000 7258 0 0 1 7258 116740809 116748066 0.000000e+00 13404.0
1 TraesCS5D01G103100 chr5D 91.200 125 3 6 4581 4699 421852003 421851881 5.830000e-36 163.0
2 TraesCS5D01G103100 chr5A 94.003 3852 143 45 773 4588 125149102 125145303 0.000000e+00 5753.0
3 TraesCS5D01G103100 chr5A 95.187 1787 67 8 4697 6481 125145306 125143537 0.000000e+00 2806.0
4 TraesCS5D01G103100 chr5A 85.185 837 69 24 1 787 125149950 125149119 0.000000e+00 808.0
5 TraesCS5D01G103100 chr5A 96.350 274 8 1 6590 6863 125143513 125143242 3.990000e-122 449.0
6 TraesCS5D01G103100 chr5A 92.032 251 16 3 7010 7258 125139400 125139152 4.170000e-92 350.0
7 TraesCS5D01G103100 chr5A 91.406 128 4 3 6889 7009 125143251 125143124 1.250000e-37 169.0
8 TraesCS5D01G103100 chr5A 86.842 76 10 0 6475 6550 402656503 402656428 1.300000e-12 86.1
9 TraesCS5D01G103100 chr5B 94.969 1630 58 8 4707 6333 128468884 128470492 0.000000e+00 2534.0
10 TraesCS5D01G103100 chr5B 90.853 1607 90 22 1 1575 128463648 128465229 0.000000e+00 2100.0
11 TraesCS5D01G103100 chr5B 90.737 1479 68 19 2827 4289 128467119 128468544 0.000000e+00 1908.0
12 TraesCS5D01G103100 chr5B 92.526 1057 59 15 1783 2830 128465995 128467040 0.000000e+00 1496.0
13 TraesCS5D01G103100 chr5B 93.640 456 16 8 6549 6997 128470607 128471056 0.000000e+00 669.0
14 TraesCS5D01G103100 chr5B 94.556 349 17 2 4241 4588 128468528 128468875 8.290000e-149 538.0
15 TraesCS5D01G103100 chr5B 94.924 197 5 2 1585 1781 128465721 128465912 3.290000e-78 303.0
16 TraesCS5D01G103100 chr5B 89.952 209 11 6 7054 7258 128471055 128471257 2.010000e-65 261.0
17 TraesCS5D01G103100 chr5B 99.153 118 1 0 6364 6481 128470491 128470608 5.700000e-51 213.0
18 TraesCS5D01G103100 chr5B 93.388 121 3 3 4584 4699 38365243 38365123 2.690000e-39 174.0
19 TraesCS5D01G103100 chr5B 100.000 28 0 0 6525 6552 672676719 672676692 1.300000e-02 52.8
20 TraesCS5D01G103100 chr4B 92.500 120 5 2 4586 4701 350760298 350760417 1.250000e-37 169.0
21 TraesCS5D01G103100 chr4B 100.000 46 0 0 6479 6524 55029675 55029630 1.300000e-12 86.1
22 TraesCS5D01G103100 chr4B 95.833 48 2 0 6477 6524 591904816 591904863 2.170000e-10 78.7
23 TraesCS5D01G103100 chr3D 91.339 127 6 1 4582 4703 498226248 498226122 1.250000e-37 169.0
24 TraesCS5D01G103100 chr1B 92.562 121 3 4 4584 4698 332136156 332136276 1.250000e-37 169.0
25 TraesCS5D01G103100 chr1B 90.000 130 7 4 4575 4699 613246056 613245928 5.830000e-36 163.0
26 TraesCS5D01G103100 chr1B 97.917 48 1 0 6477 6524 569109487 569109534 4.670000e-12 84.2
27 TraesCS5D01G103100 chr1B 95.556 45 2 0 6480 6524 5749451 5749407 1.010000e-08 73.1
28 TraesCS5D01G103100 chr3A 90.625 128 6 3 4577 4699 435805213 435805339 1.620000e-36 165.0
29 TraesCS5D01G103100 chr6A 89.474 133 8 4 4575 4702 464513184 464513315 5.830000e-36 163.0
30 TraesCS5D01G103100 chr6B 89.231 130 9 3 4574 4698 642978640 642978511 2.710000e-34 158.0
31 TraesCS5D01G103100 chr6B 100.000 48 0 0 6477 6524 570197935 570197982 1.000000e-13 89.8
32 TraesCS5D01G103100 chr6B 95.556 45 2 0 6480 6524 164810385 164810341 1.010000e-08 73.1
33 TraesCS5D01G103100 chr7B 84.112 107 17 0 5409 5515 642548316 642548210 3.580000e-18 104.0
34 TraesCS5D01G103100 chr7B 86.047 86 6 5 6479 6559 20060706 20060790 3.610000e-13 87.9
35 TraesCS5D01G103100 chrUn 100.000 46 0 0 6479 6524 17270334 17270379 1.300000e-12 86.1
36 TraesCS5D01G103100 chr4D 100.000 45 0 0 6480 6524 164884136 164884092 4.670000e-12 84.2
37 TraesCS5D01G103100 chr6D 95.556 45 2 0 6480 6524 52822040 52821996 1.010000e-08 73.1
38 TraesCS5D01G103100 chr2B 93.750 48 3 0 6477 6524 655326029 655325982 1.010000e-08 73.1
39 TraesCS5D01G103100 chr3B 90.566 53 4 1 7008 7060 819559224 819559275 1.310000e-07 69.4
40 TraesCS5D01G103100 chr7A 100.000 29 0 0 6525 6553 236448184 236448156 4.000000e-03 54.7
41 TraesCS5D01G103100 chr4A 100.000 28 0 0 6525 6552 726441812 726441839 1.300000e-02 52.8
42 TraesCS5D01G103100 chr2A 100.000 28 0 0 6525 6552 778925456 778925429 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G103100 chr5D 116740809 116748066 7257 False 13404.000000 13404 100.000000 1 7258 1 chr5D.!!$F1 7257
1 TraesCS5D01G103100 chr5A 125139152 125149950 10798 True 1722.500000 5753 92.360500 1 7258 6 chr5A.!!$R2 7257
2 TraesCS5D01G103100 chr5B 128463648 128471257 7609 False 1113.555556 2534 93.478889 1 7258 9 chr5B.!!$F1 7257

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 180 1.065709 GTTTCCAGGCTCCGTTGGATA 60.066 52.381 0.00 0.0 42.73 2.59 F
459 481 2.744202 CAAAGTCGCTAGATGCACCTTT 59.256 45.455 0.00 0.0 43.06 3.11 F
1395 1485 0.108662 CGTGCTGATCACCAGTGCTA 60.109 55.000 5.60 0.0 44.71 3.49 F
1410 1500 0.454600 TGCTACCGTTAAGGCTCTCG 59.545 55.000 0.00 0.0 46.52 4.04 F
1517 1614 0.898326 GGGGATTGGTTGCTTCCGTT 60.898 55.000 0.00 0.0 0.00 4.44 F
1817 2477 1.003355 ACACGTGCCTGGATGGAAG 60.003 57.895 17.22 0.0 38.35 3.46 F
3383 4135 2.092753 AGATGGCTGTGTATCCAACCTG 60.093 50.000 0.00 0.0 35.75 4.00 F
4606 5425 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.0 44.66 1.40 F
4694 5513 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.0 46.06 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 1485 0.243095 GTGACGAGAGCCTTAACGGT 59.757 55.000 0.00 0.00 34.25 4.83 R
2185 2848 0.953727 GATGCTTGACACCAGCAACA 59.046 50.000 5.94 0.00 42.12 3.33 R
3309 4061 1.280746 CAGTTGCTGCTGTCAACCG 59.719 57.895 19.42 11.12 43.45 4.44 R
3398 4150 2.094675 GCTGTAGCCATTCCACAATGT 58.905 47.619 0.00 0.00 38.22 2.71 R
3468 4220 0.609131 CTGTGGTCCGGGAATTGCTT 60.609 55.000 0.00 0.00 0.00 3.91 R
3581 4333 3.119602 TGCAAGCATCTTTCAAGAGCATC 60.120 43.478 11.26 0.00 38.66 3.91 R
4589 5408 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20 R
5815 6638 0.179100 TAACTCTGCATCAGCCGCTC 60.179 55.000 0.00 0.00 41.13 5.03 R
6334 7157 1.020437 GCTTCTGGATGCTAAGGTGC 58.980 55.000 1.93 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.996957 TGGATACACATAGGTACCCACA 58.003 45.455 8.74 0.00 46.17 4.17
56 58 5.906113 TTATCTCTTTCGCTTCTCTGTCT 57.094 39.130 0.00 0.00 0.00 3.41
58 60 3.906998 TCTCTTTCGCTTCTCTGTCTTG 58.093 45.455 0.00 0.00 0.00 3.02
103 112 4.215399 ACACAAAGATGTTCATAACACCCG 59.785 41.667 0.00 0.00 45.50 5.28
161 180 1.065709 GTTTCCAGGCTCCGTTGGATA 60.066 52.381 0.00 0.00 42.73 2.59
175 194 6.517605 TCCGTTGGATAATTTGACGATATCA 58.482 36.000 3.12 0.00 35.90 2.15
194 213 3.151554 TCACAGTACCAAGCTAGAACGA 58.848 45.455 0.00 0.00 0.00 3.85
210 229 7.770897 AGCTAGAACGATTTCAATTTGTAGGAT 59.229 33.333 0.00 0.00 33.72 3.24
215 234 5.357032 ACGATTTCAATTTGTAGGATGGGAC 59.643 40.000 0.00 0.00 0.00 4.46
233 252 4.289410 TGGGACAGAAATCTCATCCTTTGA 59.711 41.667 9.17 0.00 31.79 2.69
245 264 4.264253 TCATCCTTTGATGCACACTAAGG 58.736 43.478 20.98 20.98 46.60 2.69
248 267 4.724399 TCCTTTGATGCACACTAAGGAAA 58.276 39.130 24.49 11.79 42.64 3.13
285 304 6.723298 ATCGAGTCTATTCAGGAAGAATGT 57.277 37.500 0.00 0.00 46.24 2.71
287 306 5.419155 TCGAGTCTATTCAGGAAGAATGTGT 59.581 40.000 0.85 0.00 46.24 3.72
291 310 6.014242 AGTCTATTCAGGAAGAATGTGTCACA 60.014 38.462 8.40 8.40 46.24 3.58
293 312 3.126001 TCAGGAAGAATGTGTCACACC 57.874 47.619 8.08 4.59 32.73 4.16
349 369 9.606631 CTCAAAAGATTAAGCTGATACTACCTT 57.393 33.333 0.00 0.00 0.00 3.50
355 375 9.203163 AGATTAAGCTGATACTACCTTTGTACT 57.797 33.333 0.00 0.00 0.00 2.73
421 441 7.834881 ACATCTTATACTTTGATACCGAGGA 57.165 36.000 0.00 0.00 0.00 3.71
459 481 2.744202 CAAAGTCGCTAGATGCACCTTT 59.256 45.455 0.00 0.00 43.06 3.11
464 486 5.186198 AGTCGCTAGATGCACCTTTTAATT 58.814 37.500 0.00 0.00 43.06 1.40
474 512 8.370182 AGATGCACCTTTTAATTCACTGAAAAT 58.630 29.630 0.00 0.00 0.00 1.82
489 527 4.202223 ACTGAAAATATAGCGACGGATGGT 60.202 41.667 0.00 0.00 0.00 3.55
688 736 5.250774 TCAAGATTAAGCTTGGGGTCTAACT 59.749 40.000 28.04 0.00 44.14 2.24
1395 1485 0.108662 CGTGCTGATCACCAGTGCTA 60.109 55.000 5.60 0.00 44.71 3.49
1403 1493 2.736144 TCACCAGTGCTACCGTTAAG 57.264 50.000 0.00 0.00 0.00 1.85
1410 1500 0.454600 TGCTACCGTTAAGGCTCTCG 59.545 55.000 0.00 0.00 46.52 4.04
1517 1614 0.898326 GGGGATTGGTTGCTTCCGTT 60.898 55.000 0.00 0.00 0.00 4.44
1525 1622 1.468914 GGTTGCTTCCGTTGGATTCTC 59.531 52.381 0.00 0.00 0.00 2.87
1610 2189 9.635284 AAGGAGAATATTATCTATCCCCTTTCA 57.365 33.333 9.80 0.00 30.03 2.69
1781 2360 6.301861 GTCGTTAGTTCCGAGGTTTATTTTG 58.698 40.000 0.00 0.00 34.56 2.44
1817 2477 1.003355 ACACGTGCCTGGATGGAAG 60.003 57.895 17.22 0.00 38.35 3.46
1833 2494 4.543590 TGGAAGAAAAGAGTAGCAGGAG 57.456 45.455 0.00 0.00 0.00 3.69
1949 2610 8.630037 ACATTTGTAGGAGGTTTTTAACTTCTG 58.370 33.333 0.00 0.00 37.61 3.02
1977 2638 4.876679 GCCTAGTTTAGAAGGTGAATGACC 59.123 45.833 0.00 0.00 46.58 4.02
2185 2848 5.063204 TGCTAGTAAGTGTGTGCATCTTTT 58.937 37.500 0.00 0.00 0.00 2.27
2197 2860 2.223782 TGCATCTTTTGTTGCTGGTGTC 60.224 45.455 0.00 0.00 43.49 3.67
2484 3152 5.155278 TCCTATTCGGTTCACTTAAAGCA 57.845 39.130 0.00 0.00 0.00 3.91
2926 3678 2.241281 TTCTGTACGATTGGGAGGGA 57.759 50.000 0.00 0.00 0.00 4.20
3309 4061 4.458397 GGGGGCTATTAGTGTTAAGGAAC 58.542 47.826 0.00 0.00 36.00 3.62
3383 4135 2.092753 AGATGGCTGTGTATCCAACCTG 60.093 50.000 0.00 0.00 35.75 4.00
3398 4150 2.676608 CTGGTGCTGGGGTATGCA 59.323 61.111 0.00 0.00 36.79 3.96
3468 4220 3.326588 TCCTTGCCTCAGTAAAGCAGTAA 59.673 43.478 0.00 0.00 37.89 2.24
3539 4291 4.098654 ACTCTACAGATGGTCTTTCGATGG 59.901 45.833 0.00 0.00 0.00 3.51
3581 4333 9.585099 TTAAGCATTATGTATTGCCAAAAGAAG 57.415 29.630 0.00 0.00 39.72 2.85
3598 4350 5.564048 AAGAAGATGCTCTTGAAAGATGC 57.436 39.130 3.55 1.23 36.73 3.91
3610 4362 7.218228 TCTTGAAAGATGCTTGCAATTAGAA 57.782 32.000 0.00 0.00 0.00 2.10
3664 4419 7.687941 AAACAGTGGTAATCATCAACTTAGG 57.312 36.000 0.00 0.00 0.00 2.69
3665 4420 6.620877 ACAGTGGTAATCATCAACTTAGGA 57.379 37.500 0.00 0.00 0.00 2.94
3666 4421 6.407202 ACAGTGGTAATCATCAACTTAGGAC 58.593 40.000 0.00 0.00 0.00 3.85
3667 4422 6.013725 ACAGTGGTAATCATCAACTTAGGACA 60.014 38.462 0.00 0.00 0.00 4.02
3668 4423 6.536582 CAGTGGTAATCATCAACTTAGGACAG 59.463 42.308 0.00 0.00 0.00 3.51
3670 4425 6.758886 GTGGTAATCATCAACTTAGGACAGAG 59.241 42.308 0.00 0.00 0.00 3.35
3671 4426 6.667848 TGGTAATCATCAACTTAGGACAGAGA 59.332 38.462 0.00 0.00 0.00 3.10
3672 4427 7.345653 TGGTAATCATCAACTTAGGACAGAGAT 59.654 37.037 0.00 0.00 0.00 2.75
3731 4495 0.675633 GATGCACTGCCAAACAAGGT 59.324 50.000 0.00 0.00 0.00 3.50
3753 4517 5.423931 GGTTTCTCTCCTTCTAGATTGACCT 59.576 44.000 0.00 0.00 0.00 3.85
3770 4534 3.222603 GACCTTGACACACCTTTTGGAT 58.777 45.455 0.00 0.00 44.07 3.41
3771 4535 3.636764 GACCTTGACACACCTTTTGGATT 59.363 43.478 0.00 0.00 44.07 3.01
3785 4549 7.489113 CACCTTTTGGATTTATATGAACTGCAC 59.511 37.037 0.00 0.00 44.07 4.57
3821 4585 6.889722 CCAAATATCCTGTTGAGGTAGGAAAA 59.110 38.462 0.00 0.00 45.59 2.29
3893 4657 6.503524 AGATTCTCTTATCGACTTCTTCAGC 58.496 40.000 0.00 0.00 0.00 4.26
3900 4664 3.469008 TCGACTTCTTCAGCTTTTCCA 57.531 42.857 0.00 0.00 0.00 3.53
3911 4675 2.502295 AGCTTTTCCAGTGCTGAGAAG 58.498 47.619 0.02 3.49 35.54 2.85
3973 4740 5.105877 TGGCTCATACACTCTACACAAGTAC 60.106 44.000 0.00 0.00 0.00 2.73
3991 4758 6.208204 ACAAGTACGTAGTCACTACTGGAAAT 59.792 38.462 13.21 0.00 43.93 2.17
4000 4767 7.964604 AGTCACTACTGGAAATAAACACTTC 57.035 36.000 0.00 0.00 33.57 3.01
4007 4774 5.240623 ACTGGAAATAAACACTTCGCAATGA 59.759 36.000 0.00 0.00 0.00 2.57
4094 4862 5.490139 TTCTCCCGACGTATACTTACAAG 57.510 43.478 0.56 0.00 0.00 3.16
4098 4866 5.401550 TCCCGACGTATACTTACAAGTTTG 58.598 41.667 0.00 0.00 40.37 2.93
4142 4910 9.895138 CCTATTTTAGTTTACTTAGGTAGGCAA 57.105 33.333 0.00 0.00 0.00 4.52
4155 4933 3.118408 AGGTAGGCAACGCATTTCTATCA 60.118 43.478 0.00 0.00 46.39 2.15
4156 4934 3.625764 GGTAGGCAACGCATTTCTATCAA 59.374 43.478 0.00 0.00 46.39 2.57
4157 4935 4.095782 GGTAGGCAACGCATTTCTATCAAA 59.904 41.667 0.00 0.00 46.39 2.69
4158 4936 4.782019 AGGCAACGCATTTCTATCAAAA 57.218 36.364 0.00 0.00 46.39 2.44
4159 4937 4.485163 AGGCAACGCATTTCTATCAAAAC 58.515 39.130 0.00 0.00 46.39 2.43
4160 4938 3.612423 GGCAACGCATTTCTATCAAAACC 59.388 43.478 0.00 0.00 0.00 3.27
4161 4939 4.233789 GCAACGCATTTCTATCAAAACCA 58.766 39.130 0.00 0.00 0.00 3.67
4162 4940 4.089923 GCAACGCATTTCTATCAAAACCAC 59.910 41.667 0.00 0.00 0.00 4.16
4163 4941 5.218885 CAACGCATTTCTATCAAAACCACA 58.781 37.500 0.00 0.00 0.00 4.17
4164 4942 5.643379 ACGCATTTCTATCAAAACCACAT 57.357 34.783 0.00 0.00 0.00 3.21
4165 4943 5.640732 ACGCATTTCTATCAAAACCACATC 58.359 37.500 0.00 0.00 0.00 3.06
4166 4944 5.415701 ACGCATTTCTATCAAAACCACATCT 59.584 36.000 0.00 0.00 0.00 2.90
4167 4945 5.740569 CGCATTTCTATCAAAACCACATCTG 59.259 40.000 0.00 0.00 0.00 2.90
4168 4946 6.623549 CGCATTTCTATCAAAACCACATCTGT 60.624 38.462 0.00 0.00 0.00 3.41
4169 4947 7.092716 GCATTTCTATCAAAACCACATCTGTT 58.907 34.615 0.00 0.00 0.00 3.16
4170 4948 7.599998 GCATTTCTATCAAAACCACATCTGTTT 59.400 33.333 0.00 0.00 37.52 2.83
4171 4949 9.480053 CATTTCTATCAAAACCACATCTGTTTT 57.520 29.630 0.00 0.00 44.43 2.43
4188 4966 5.663556 TCTGTTTTGGTGGACCCTAAAAATT 59.336 36.000 6.02 0.00 39.22 1.82
4314 5123 7.496920 TGTTCTTTATGCATCTTCCATCTAGTG 59.503 37.037 0.19 0.00 0.00 2.74
4325 5142 1.407437 CCATCTAGTGTGGCAGTTCCC 60.407 57.143 4.40 0.00 0.00 3.97
4430 5249 9.860898 AATTTGCTAACTCAATCTTGTTATTCC 57.139 29.630 0.00 0.00 0.00 3.01
4592 5411 9.515226 TTTTGCCATTGAATACTATATACTCCC 57.485 33.333 0.00 0.00 0.00 4.30
4594 5413 8.079211 TGCCATTGAATACTATATACTCCCTC 57.921 38.462 0.00 0.00 0.00 4.30
4595 5414 7.125811 TGCCATTGAATACTATATACTCCCTCC 59.874 40.741 0.00 0.00 0.00 4.30
4596 5415 7.684670 GCCATTGAATACTATATACTCCCTCCG 60.685 44.444 0.00 0.00 0.00 4.63
4597 5416 7.342284 CCATTGAATACTATATACTCCCTCCGT 59.658 40.741 0.00 0.00 0.00 4.69
4598 5417 7.934855 TTGAATACTATATACTCCCTCCGTC 57.065 40.000 0.00 0.00 0.00 4.79
4599 5418 6.421485 TGAATACTATATACTCCCTCCGTCC 58.579 44.000 0.00 0.00 0.00 4.79
4600 5419 3.347077 ACTATATACTCCCTCCGTCCG 57.653 52.381 0.00 0.00 0.00 4.79
4601 5420 2.026449 ACTATATACTCCCTCCGTCCGG 60.026 54.545 0.00 0.00 0.00 5.14
4602 5421 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
4603 5422 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
4604 5423 0.187851 ATACTCCCTCCGTCCGGAAT 59.812 55.000 5.23 0.00 44.66 3.01
4605 5424 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
4606 5425 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
4607 5426 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
4608 5427 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
4609 5428 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
4610 5429 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4611 5430 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4612 5431 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4613 5432 1.135315 TCCGTCCGGAATTACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4614 5433 0.643820 CGTCCGGAATTACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
4615 5434 1.717194 GTCCGGAATTACTTGTCGCA 58.283 50.000 5.23 0.00 0.00 5.10
4616 5435 2.070783 GTCCGGAATTACTTGTCGCAA 58.929 47.619 5.23 0.00 0.00 4.85
4617 5436 2.481185 GTCCGGAATTACTTGTCGCAAA 59.519 45.455 5.23 0.00 0.00 3.68
4618 5437 3.058777 GTCCGGAATTACTTGTCGCAAAA 60.059 43.478 5.23 0.00 0.00 2.44
4619 5438 3.564644 TCCGGAATTACTTGTCGCAAAAA 59.435 39.130 0.00 0.00 0.00 1.94
4620 5439 4.216687 TCCGGAATTACTTGTCGCAAAAAT 59.783 37.500 0.00 0.00 0.00 1.82
4621 5440 4.323336 CCGGAATTACTTGTCGCAAAAATG 59.677 41.667 0.00 0.00 0.00 2.32
4622 5441 5.150683 CGGAATTACTTGTCGCAAAAATGA 58.849 37.500 0.00 0.00 0.00 2.57
4623 5442 5.627367 CGGAATTACTTGTCGCAAAAATGAA 59.373 36.000 0.00 0.00 0.00 2.57
4624 5443 6.143118 CGGAATTACTTGTCGCAAAAATGAAA 59.857 34.615 0.00 0.00 0.00 2.69
4625 5444 7.148820 CGGAATTACTTGTCGCAAAAATGAAAT 60.149 33.333 0.00 0.00 0.00 2.17
4626 5445 7.951565 GGAATTACTTGTCGCAAAAATGAAATG 59.048 33.333 0.00 0.00 0.00 2.32
4627 5446 6.761731 TTACTTGTCGCAAAAATGAAATGG 57.238 33.333 0.00 0.00 0.00 3.16
4628 5447 4.942852 ACTTGTCGCAAAAATGAAATGGA 58.057 34.783 0.00 0.00 0.00 3.41
4629 5448 5.540911 ACTTGTCGCAAAAATGAAATGGAT 58.459 33.333 0.00 0.00 0.00 3.41
4630 5449 5.406175 ACTTGTCGCAAAAATGAAATGGATG 59.594 36.000 0.00 0.00 0.00 3.51
4631 5450 4.880759 TGTCGCAAAAATGAAATGGATGT 58.119 34.783 0.00 0.00 0.00 3.06
4632 5451 6.018589 TGTCGCAAAAATGAAATGGATGTA 57.981 33.333 0.00 0.00 0.00 2.29
4633 5452 6.629128 TGTCGCAAAAATGAAATGGATGTAT 58.371 32.000 0.00 0.00 0.00 2.29
4634 5453 6.751425 TGTCGCAAAAATGAAATGGATGTATC 59.249 34.615 0.00 0.00 0.00 2.24
4635 5454 6.974622 GTCGCAAAAATGAAATGGATGTATCT 59.025 34.615 0.00 0.00 0.00 1.98
4636 5455 8.128582 GTCGCAAAAATGAAATGGATGTATCTA 58.871 33.333 0.00 0.00 0.00 1.98
4637 5456 8.344831 TCGCAAAAATGAAATGGATGTATCTAG 58.655 33.333 0.00 0.00 0.00 2.43
4638 5457 8.344831 CGCAAAAATGAAATGGATGTATCTAGA 58.655 33.333 0.00 0.00 0.00 2.43
4669 5488 9.915629 AAATACGTCTAGATACATCCATTTCTC 57.084 33.333 0.00 0.00 0.00 2.87
4670 5489 8.871629 ATACGTCTAGATACATCCATTTCTCT 57.128 34.615 0.00 0.00 0.00 3.10
4671 5490 6.976088 ACGTCTAGATACATCCATTTCTCTG 58.024 40.000 0.00 0.00 0.00 3.35
4672 5491 6.773200 ACGTCTAGATACATCCATTTCTCTGA 59.227 38.462 0.00 0.00 0.00 3.27
4673 5492 7.081349 CGTCTAGATACATCCATTTCTCTGAC 58.919 42.308 0.00 0.00 0.00 3.51
4674 5493 7.255277 CGTCTAGATACATCCATTTCTCTGACA 60.255 40.741 0.00 0.00 0.00 3.58
4675 5494 8.417106 GTCTAGATACATCCATTTCTCTGACAA 58.583 37.037 0.00 0.00 0.00 3.18
4676 5495 8.637099 TCTAGATACATCCATTTCTCTGACAAG 58.363 37.037 0.00 0.00 0.00 3.16
4677 5496 7.192852 AGATACATCCATTTCTCTGACAAGT 57.807 36.000 0.00 0.00 0.00 3.16
4678 5497 8.311395 AGATACATCCATTTCTCTGACAAGTA 57.689 34.615 0.00 0.00 0.00 2.24
4679 5498 8.762645 AGATACATCCATTTCTCTGACAAGTAA 58.237 33.333 0.00 0.00 0.00 2.24
4680 5499 9.553064 GATACATCCATTTCTCTGACAAGTAAT 57.447 33.333 0.00 0.00 0.00 1.89
4681 5500 9.911788 ATACATCCATTTCTCTGACAAGTAATT 57.088 29.630 0.00 0.00 0.00 1.40
4682 5501 8.273780 ACATCCATTTCTCTGACAAGTAATTC 57.726 34.615 0.00 0.00 0.00 2.17
4683 5502 7.337942 ACATCCATTTCTCTGACAAGTAATTCC 59.662 37.037 0.00 0.00 0.00 3.01
4684 5503 5.874810 TCCATTTCTCTGACAAGTAATTCCG 59.125 40.000 0.00 0.00 0.00 4.30
4685 5504 5.065218 CCATTTCTCTGACAAGTAATTCCGG 59.935 44.000 0.00 0.00 0.00 5.14
4686 5505 5.477607 TTTCTCTGACAAGTAATTCCGGA 57.522 39.130 0.00 0.00 0.00 5.14
4687 5506 4.451629 TCTCTGACAAGTAATTCCGGAC 57.548 45.455 1.83 0.00 0.00 4.79
4688 5507 3.119602 TCTCTGACAAGTAATTCCGGACG 60.120 47.826 1.83 0.00 0.00 4.79
4689 5508 2.094390 TCTGACAAGTAATTCCGGACGG 60.094 50.000 1.83 3.96 0.00 4.79
4690 5509 1.894466 TGACAAGTAATTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4691 5510 2.094390 TGACAAGTAATTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4692 5511 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4693 5512 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4694 5513 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
4695 5514 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4696 5515 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
4697 5516 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4698 5517 0.187851 ATTCCGGACGGAGGGAGTAT 59.812 55.000 13.64 0.61 46.06 2.12
4699 5518 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
4700 5519 1.070604 TCCGGACGGAGGGAGTATAT 58.929 55.000 9.76 0.00 39.76 0.86
4701 5520 1.174783 CCGGACGGAGGGAGTATATG 58.825 60.000 4.40 0.00 37.50 1.78
4702 5521 1.547223 CCGGACGGAGGGAGTATATGT 60.547 57.143 4.40 0.00 37.50 2.29
4703 5522 2.236766 CGGACGGAGGGAGTATATGTT 58.763 52.381 0.00 0.00 0.00 2.71
4704 5523 3.415212 CGGACGGAGGGAGTATATGTTA 58.585 50.000 0.00 0.00 0.00 2.41
4705 5524 3.822735 CGGACGGAGGGAGTATATGTTAA 59.177 47.826 0.00 0.00 0.00 2.01
4708 5527 6.404074 CGGACGGAGGGAGTATATGTTAATAC 60.404 46.154 0.00 0.00 33.33 1.89
4755 5574 9.981114 ATGTGTTAATTTTCCCTCACTAAAAAG 57.019 29.630 0.00 0.00 0.00 2.27
4757 5576 7.384115 GTGTTAATTTTCCCTCACTAAAAAGCC 59.616 37.037 0.00 0.00 0.00 4.35
4779 5598 0.813184 ATCGGCTCCTTGCACAAATG 59.187 50.000 0.00 0.00 45.15 2.32
4853 5672 2.683968 GCATATGGCCTGCAATTCATG 58.316 47.619 10.43 0.00 39.46 3.07
4896 5715 4.628333 CCGGTGTTAATCGTGTAGTGAAAT 59.372 41.667 0.00 0.00 0.00 2.17
4914 5733 2.837532 ATCCAAACAGCGGCAAAAAT 57.162 40.000 1.45 0.00 0.00 1.82
5016 5835 9.440761 AGGACTATGAGTAGATAACCAAAAGAT 57.559 33.333 0.00 0.00 0.00 2.40
5144 5965 6.884280 ATTAACACTTCTGCTGCTACTTTT 57.116 33.333 0.00 0.00 0.00 2.27
5599 6422 6.146837 CACTAGTTCTTGAAACAGATGGACAG 59.853 42.308 0.00 0.00 0.00 3.51
5865 6688 5.862678 TTCTTTTGGGGAGTTAAACCTTG 57.137 39.130 0.00 0.00 0.00 3.61
5878 6701 9.110502 GGAGTTAAACCTTGAACCATTAGATAG 57.889 37.037 0.00 0.00 0.00 2.08
6108 6931 0.323957 GGAGGTTGTCACCCTGTACC 59.676 60.000 0.00 0.00 45.63 3.34
6305 7128 5.654603 ATAGTTGTTGTACAGATCACGGA 57.345 39.130 0.00 0.00 0.00 4.69
6313 7136 4.332828 TGTACAGATCACGGAAAGAGAGA 58.667 43.478 0.00 0.00 0.00 3.10
6332 7155 3.900446 GCATCTGCTTTGGTTTGCT 57.100 47.368 0.00 0.00 38.21 3.91
6334 7157 2.872370 GCATCTGCTTTGGTTTGCTAG 58.128 47.619 0.00 0.00 38.21 3.42
6335 7158 2.872370 CATCTGCTTTGGTTTGCTAGC 58.128 47.619 8.10 8.10 0.00 3.42
6336 7159 1.979855 TCTGCTTTGGTTTGCTAGCA 58.020 45.000 14.93 14.93 41.01 3.49
6337 7160 1.608590 TCTGCTTTGGTTTGCTAGCAC 59.391 47.619 19.17 6.88 38.61 4.40
6338 7161 0.673437 TGCTTTGGTTTGCTAGCACC 59.327 50.000 19.17 17.16 38.61 5.01
6339 7162 0.961753 GCTTTGGTTTGCTAGCACCT 59.038 50.000 19.17 0.00 33.11 4.00
6340 7163 1.341209 GCTTTGGTTTGCTAGCACCTT 59.659 47.619 19.17 0.00 33.11 3.50
6341 7164 2.556622 GCTTTGGTTTGCTAGCACCTTA 59.443 45.455 19.17 0.00 33.11 2.69
6342 7165 3.366374 GCTTTGGTTTGCTAGCACCTTAG 60.366 47.826 19.17 16.82 33.11 2.18
6343 7166 1.821216 TGGTTTGCTAGCACCTTAGC 58.179 50.000 19.17 12.95 44.97 3.09
6349 7172 1.876322 GCTAGCACCTTAGCATCCAG 58.124 55.000 10.63 0.00 44.30 3.86
6350 7173 1.414181 GCTAGCACCTTAGCATCCAGA 59.586 52.381 10.63 0.00 44.30 3.86
6351 7174 2.158900 GCTAGCACCTTAGCATCCAGAA 60.159 50.000 10.63 0.00 44.30 3.02
6352 7175 2.706339 AGCACCTTAGCATCCAGAAG 57.294 50.000 0.00 0.00 36.85 2.85
6353 7176 1.020437 GCACCTTAGCATCCAGAAGC 58.980 55.000 0.00 0.00 0.00 3.86
6354 7177 1.407989 GCACCTTAGCATCCAGAAGCT 60.408 52.381 2.65 2.65 44.55 3.74
6355 7178 2.286872 CACCTTAGCATCCAGAAGCTG 58.713 52.381 7.61 0.00 41.97 4.24
6356 7179 1.912043 ACCTTAGCATCCAGAAGCTGT 59.088 47.619 7.61 0.00 41.97 4.40
6357 7180 3.107601 ACCTTAGCATCCAGAAGCTGTA 58.892 45.455 7.61 0.00 41.97 2.74
6358 7181 3.713764 ACCTTAGCATCCAGAAGCTGTAT 59.286 43.478 7.61 0.00 41.97 2.29
6359 7182 4.901849 ACCTTAGCATCCAGAAGCTGTATA 59.098 41.667 7.61 0.00 41.97 1.47
6360 7183 5.366768 ACCTTAGCATCCAGAAGCTGTATAA 59.633 40.000 7.61 0.00 41.97 0.98
6361 7184 6.043706 ACCTTAGCATCCAGAAGCTGTATAAT 59.956 38.462 7.61 0.00 41.97 1.28
6362 7185 6.593382 CCTTAGCATCCAGAAGCTGTATAATC 59.407 42.308 7.61 0.00 41.97 1.75
6473 7317 4.241590 TGTTGCTTTTGGCTGTGAATAG 57.758 40.909 0.00 0.00 42.39 1.73
6479 7323 4.397417 GCTTTTGGCTGTGAATAGTCATCT 59.603 41.667 0.00 0.00 35.44 2.90
6480 7324 5.586243 GCTTTTGGCTGTGAATAGTCATCTA 59.414 40.000 0.00 0.00 35.44 1.98
6481 7325 6.457528 GCTTTTGGCTGTGAATAGTCATCTAC 60.458 42.308 0.00 0.00 35.44 2.59
6482 7326 5.939764 TTGGCTGTGAATAGTCATCTACT 57.060 39.130 0.00 0.00 42.62 2.57
6483 7327 5.521906 TGGCTGTGAATAGTCATCTACTC 57.478 43.478 0.00 0.00 39.80 2.59
6484 7328 4.342378 TGGCTGTGAATAGTCATCTACTCC 59.658 45.833 0.00 0.00 39.80 3.85
6485 7329 4.262249 GGCTGTGAATAGTCATCTACTCCC 60.262 50.000 0.00 0.00 39.80 4.30
6486 7330 4.586841 GCTGTGAATAGTCATCTACTCCCT 59.413 45.833 0.00 0.00 39.80 4.20
6487 7331 5.278758 GCTGTGAATAGTCATCTACTCCCTC 60.279 48.000 0.00 0.00 39.80 4.30
6488 7332 5.141182 TGTGAATAGTCATCTACTCCCTCC 58.859 45.833 0.00 0.00 39.80 4.30
6489 7333 4.216687 GTGAATAGTCATCTACTCCCTCCG 59.783 50.000 0.00 0.00 39.80 4.63
6490 7334 4.141228 TGAATAGTCATCTACTCCCTCCGT 60.141 45.833 0.00 0.00 39.80 4.69
6491 7335 2.830651 AGTCATCTACTCCCTCCGTT 57.169 50.000 0.00 0.00 30.33 4.44
6492 7336 2.657143 AGTCATCTACTCCCTCCGTTC 58.343 52.381 0.00 0.00 30.33 3.95
6493 7337 1.682323 GTCATCTACTCCCTCCGTTCC 59.318 57.143 0.00 0.00 0.00 3.62
6494 7338 0.669077 CATCTACTCCCTCCGTTCCG 59.331 60.000 0.00 0.00 0.00 4.30
6495 7339 0.549950 ATCTACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
6496 7340 0.549950 TCTACTCCCTCCGTTCCGAT 59.450 55.000 0.00 0.00 0.00 4.18
6497 7341 1.064166 TCTACTCCCTCCGTTCCGATT 60.064 52.381 0.00 0.00 0.00 3.34
6498 7342 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
6499 7343 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
6500 7344 2.395619 ACTCCCTCCGTTCCGATTTAT 58.604 47.619 0.00 0.00 0.00 1.40
6501 7345 2.770232 ACTCCCTCCGTTCCGATTTATT 59.230 45.455 0.00 0.00 0.00 1.40
6502 7346 3.181468 ACTCCCTCCGTTCCGATTTATTC 60.181 47.826 0.00 0.00 0.00 1.75
6504 7348 2.482490 CCCTCCGTTCCGATTTATTCGT 60.482 50.000 0.00 0.00 46.65 3.85
6505 7349 2.793232 CCTCCGTTCCGATTTATTCGTC 59.207 50.000 0.00 0.00 46.65 4.20
6506 7350 2.453080 TCCGTTCCGATTTATTCGTCG 58.547 47.619 0.00 0.00 46.65 5.12
6507 7351 2.159393 TCCGTTCCGATTTATTCGTCGT 60.159 45.455 0.00 0.00 46.65 4.34
6508 7352 2.035176 CCGTTCCGATTTATTCGTCGTG 60.035 50.000 0.00 0.00 46.65 4.35
6509 7353 2.035176 CGTTCCGATTTATTCGTCGTGG 60.035 50.000 0.00 0.00 46.65 4.94
6510 7354 2.925563 GTTCCGATTTATTCGTCGTGGT 59.074 45.455 0.00 0.00 46.65 4.16
6511 7355 3.235157 TCCGATTTATTCGTCGTGGTT 57.765 42.857 0.00 0.00 46.65 3.67
6512 7356 3.587923 TCCGATTTATTCGTCGTGGTTT 58.412 40.909 0.00 0.00 46.65 3.27
6513 7357 3.995705 TCCGATTTATTCGTCGTGGTTTT 59.004 39.130 0.00 0.00 46.65 2.43
6514 7358 5.167121 TCCGATTTATTCGTCGTGGTTTTA 58.833 37.500 0.00 0.00 46.65 1.52
6515 7359 5.289193 TCCGATTTATTCGTCGTGGTTTTAG 59.711 40.000 0.00 0.00 46.65 1.85
6516 7360 5.062558 CCGATTTATTCGTCGTGGTTTTAGT 59.937 40.000 0.00 0.00 46.65 2.24
6517 7361 6.401367 CCGATTTATTCGTCGTGGTTTTAGTT 60.401 38.462 0.00 0.00 46.65 2.24
6518 7362 6.675747 CGATTTATTCGTCGTGGTTTTAGTTC 59.324 38.462 0.00 0.00 43.01 3.01
6519 7363 6.841443 TTTATTCGTCGTGGTTTTAGTTCA 57.159 33.333 0.00 0.00 0.00 3.18
6520 7364 6.841443 TTATTCGTCGTGGTTTTAGTTCAA 57.159 33.333 0.00 0.00 0.00 2.69
6521 7365 5.738118 ATTCGTCGTGGTTTTAGTTCAAA 57.262 34.783 0.00 0.00 0.00 2.69
6522 7366 5.738118 TTCGTCGTGGTTTTAGTTCAAAT 57.262 34.783 0.00 0.00 0.00 2.32
6523 7367 5.738118 TCGTCGTGGTTTTAGTTCAAATT 57.262 34.783 0.00 0.00 0.00 1.82
6524 7368 6.841443 TCGTCGTGGTTTTAGTTCAAATTA 57.159 33.333 0.00 0.00 0.00 1.40
6525 7369 6.648502 TCGTCGTGGTTTTAGTTCAAATTAC 58.351 36.000 0.00 0.00 0.00 1.89
6526 7370 5.557405 CGTCGTGGTTTTAGTTCAAATTACG 59.443 40.000 0.00 0.00 32.74 3.18
6527 7371 6.561902 CGTCGTGGTTTTAGTTCAAATTACGA 60.562 38.462 0.00 0.00 35.55 3.43
6528 7372 6.788930 GTCGTGGTTTTAGTTCAAATTACGAG 59.211 38.462 0.00 0.00 37.06 4.18
6529 7373 6.479660 TCGTGGTTTTAGTTCAAATTACGAGT 59.520 34.615 0.00 0.00 34.27 4.18
6530 7374 7.651304 TCGTGGTTTTAGTTCAAATTACGAGTA 59.349 33.333 0.00 0.00 34.27 2.59
6531 7375 8.274939 CGTGGTTTTAGTTCAAATTACGAGTAA 58.725 33.333 0.00 0.00 32.99 2.24
6532 7376 9.934190 GTGGTTTTAGTTCAAATTACGAGTAAA 57.066 29.630 0.00 0.00 0.00 2.01
6540 7384 8.433126 AGTTCAAATTACGAGTAAATCAGAACG 58.567 33.333 17.53 0.00 34.99 3.95
6541 7385 7.285783 TCAAATTACGAGTAAATCAGAACGG 57.714 36.000 0.00 0.00 0.00 4.44
6542 7386 7.092079 TCAAATTACGAGTAAATCAGAACGGA 58.908 34.615 0.00 0.00 0.00 4.69
6543 7387 7.274904 TCAAATTACGAGTAAATCAGAACGGAG 59.725 37.037 0.00 0.00 0.00 4.63
6544 7388 3.505464 ACGAGTAAATCAGAACGGAGG 57.495 47.619 0.00 0.00 0.00 4.30
6545 7389 2.165845 ACGAGTAAATCAGAACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
6546 7390 2.426024 CGAGTAAATCAGAACGGAGGGA 59.574 50.000 0.00 0.00 0.00 4.20
6547 7391 3.489398 CGAGTAAATCAGAACGGAGGGAG 60.489 52.174 0.00 0.00 0.00 4.30
6741 7585 5.470098 TGCTTTCTTTAGCTCGATTTCTGTT 59.530 36.000 0.00 0.00 41.76 3.16
6903 7749 3.978610 ACCGTCCCTAGTTATCTCTTGT 58.021 45.455 0.00 0.00 0.00 3.16
7001 7857 4.877378 AAGTGTTATCTACCGTTGGACA 57.123 40.909 0.00 0.00 0.00 4.02
7042 11624 4.200874 AGAGAGTATCATTCTTCGGACGT 58.799 43.478 0.00 0.00 37.82 4.34
7089 11671 6.682746 AGTACTATCATTGAGCATTAGACGG 58.317 40.000 0.00 0.00 0.00 4.79
7209 11793 8.713737 AGGAGATAATTTACTTACCGAACAAC 57.286 34.615 0.00 0.00 0.00 3.32
7226 11810 5.277634 CGAACAACCTCACGACCTTAATTTT 60.278 40.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.566197 AAGAGATAAAAAGAGCAAGTGTGG 57.434 37.500 0.00 0.00 0.00 4.17
23 24 5.703130 AGCGAAAGAGATAAAAAGAGCAAGT 59.297 36.000 0.00 0.00 0.00 3.16
161 180 6.037172 GCTTGGTACTGTGATATCGTCAAATT 59.963 38.462 0.00 0.00 38.90 1.82
175 194 4.803098 AATCGTTCTAGCTTGGTACTGT 57.197 40.909 0.00 0.00 0.00 3.55
194 213 6.493166 TCTGTCCCATCCTACAAATTGAAAT 58.507 36.000 0.00 0.00 0.00 2.17
210 229 4.289410 TCAAAGGATGAGATTTCTGTCCCA 59.711 41.667 5.14 0.00 32.55 4.37
245 264 6.370166 AGACTCGATTCTCTTGTGGAAATTTC 59.630 38.462 9.83 9.83 0.00 2.17
248 267 5.413309 AGACTCGATTCTCTTGTGGAAAT 57.587 39.130 0.00 0.00 0.00 2.17
285 304 3.093814 ACGAGTGTATATGGGTGTGACA 58.906 45.455 0.00 0.00 0.00 3.58
287 306 3.628008 AGACGAGTGTATATGGGTGTGA 58.372 45.455 0.00 0.00 0.00 3.58
291 310 4.044317 AGGGATAGACGAGTGTATATGGGT 59.956 45.833 0.00 0.00 32.82 4.51
293 312 8.838365 GTTATAGGGATAGACGAGTGTATATGG 58.162 40.741 0.00 0.00 32.82 2.74
349 369 9.601971 GCAAAAACGTCTTATATTTCAGTACAA 57.398 29.630 0.00 0.00 0.00 2.41
415 435 9.542462 TTTGTCAATCTTAATATACTTCCTCGG 57.458 33.333 0.00 0.00 0.00 4.63
421 441 9.601217 AGCGACTTTGTCAATCTTAATATACTT 57.399 29.630 0.00 0.00 32.09 2.24
427 449 7.254590 GCATCTAGCGACTTTGTCAATCTTAAT 60.255 37.037 0.00 0.00 32.09 1.40
459 481 7.707464 TCCGTCGCTATATTTTCAGTGAATTAA 59.293 33.333 6.36 0.00 33.36 1.40
464 486 4.642445 TCCGTCGCTATATTTTCAGTGA 57.358 40.909 0.00 0.00 0.00 3.41
474 512 1.202842 TCCAGACCATCCGTCGCTATA 60.203 52.381 0.00 0.00 46.92 1.31
481 519 4.086706 GGATTTATTCCAGACCATCCGT 57.913 45.455 0.00 0.00 44.74 4.69
507 547 0.861837 GCTATGTGTGCTCGCATACC 59.138 55.000 15.99 8.09 43.39 2.73
755 809 0.320374 CCTCCAAGCACCAACGACTA 59.680 55.000 0.00 0.00 0.00 2.59
800 887 2.693762 CGGGCCGTACGAGAGACAA 61.694 63.158 19.97 0.00 0.00 3.18
824 913 2.583441 GCCCCTGGGGTTTTTGCTC 61.583 63.158 31.95 9.79 46.51 4.26
1395 1485 0.243095 GTGACGAGAGCCTTAACGGT 59.757 55.000 0.00 0.00 34.25 4.83
1410 1500 1.344942 AATTCTCGTCGCAGCGTGAC 61.345 55.000 15.93 5.55 39.38 3.67
1517 1614 1.639722 TCTTGACCACCGAGAATCCA 58.360 50.000 0.00 0.00 32.40 3.41
1525 1622 1.635663 GGCGACAATCTTGACCACCG 61.636 60.000 0.00 0.00 0.00 4.94
1610 2189 3.948851 GAAAGCCGTTTTCTCGAAAGTT 58.051 40.909 0.76 0.00 41.61 2.66
1781 2360 7.148689 GGCACGTGTGGTAAGCTATATAAATAC 60.149 40.741 18.38 0.00 0.00 1.89
1817 2477 2.770164 TGCCTCCTGCTACTCTTTTC 57.230 50.000 0.00 0.00 42.00 2.29
1833 2494 1.386412 CACGAAACATTTGCGATTGCC 59.614 47.619 1.50 0.00 41.78 4.52
1949 2610 4.024670 TCACCTTCTAAACTAGGCTCTCC 58.975 47.826 0.00 0.00 34.79 3.71
1977 2638 4.464008 AGCATGACAACCCATAATACTGG 58.536 43.478 0.00 0.00 35.95 4.00
2185 2848 0.953727 GATGCTTGACACCAGCAACA 59.046 50.000 5.94 0.00 42.12 3.33
2197 2860 2.555199 CGTTCCTTCCCTAGATGCTTG 58.445 52.381 0.00 0.00 0.00 4.01
2607 3277 3.762288 AGTGTTAGTGCTCTATTCCGTGA 59.238 43.478 0.00 0.00 0.00 4.35
2898 3650 3.116300 CAATCGTACAGAATCACTCCCG 58.884 50.000 0.00 0.00 0.00 5.14
2926 3678 2.297129 GCTCCTCTCTTGCCCCAGT 61.297 63.158 0.00 0.00 0.00 4.00
3309 4061 1.280746 CAGTTGCTGCTGTCAACCG 59.719 57.895 19.42 11.12 43.45 4.44
3398 4150 2.094675 GCTGTAGCCATTCCACAATGT 58.905 47.619 0.00 0.00 38.22 2.71
3468 4220 0.609131 CTGTGGTCCGGGAATTGCTT 60.609 55.000 0.00 0.00 0.00 3.91
3528 4280 3.585862 TGTAAGCAGACCATCGAAAGAC 58.414 45.455 0.00 0.00 46.97 3.01
3581 4333 3.119602 TGCAAGCATCTTTCAAGAGCATC 60.120 43.478 11.26 0.00 38.66 3.91
3660 4415 8.891985 ATCTATAATCTGCATCTCTGTCCTAA 57.108 34.615 0.00 0.00 0.00 2.69
3661 4416 8.891985 AATCTATAATCTGCATCTCTGTCCTA 57.108 34.615 0.00 0.00 0.00 2.94
3662 4417 7.795534 AATCTATAATCTGCATCTCTGTCCT 57.204 36.000 0.00 0.00 0.00 3.85
3663 4418 7.548780 GGAAATCTATAATCTGCATCTCTGTCC 59.451 40.741 0.00 0.00 0.00 4.02
3664 4419 8.313292 AGGAAATCTATAATCTGCATCTCTGTC 58.687 37.037 0.00 0.00 0.00 3.51
3665 4420 8.095792 CAGGAAATCTATAATCTGCATCTCTGT 58.904 37.037 0.00 0.00 0.00 3.41
3666 4421 8.312564 TCAGGAAATCTATAATCTGCATCTCTG 58.687 37.037 0.00 0.00 0.00 3.35
3667 4422 8.433249 TCAGGAAATCTATAATCTGCATCTCT 57.567 34.615 0.00 0.00 0.00 3.10
3668 4423 8.530311 TCTCAGGAAATCTATAATCTGCATCTC 58.470 37.037 0.00 0.00 0.00 2.75
3670 4425 9.316730 GATCTCAGGAAATCTATAATCTGCATC 57.683 37.037 0.00 0.00 0.00 3.91
3671 4426 9.049050 AGATCTCAGGAAATCTATAATCTGCAT 57.951 33.333 0.00 0.00 30.50 3.96
3672 4427 8.433249 AGATCTCAGGAAATCTATAATCTGCA 57.567 34.615 0.00 0.00 30.50 4.41
3731 4495 6.726299 TCAAGGTCAATCTAGAAGGAGAGAAA 59.274 38.462 0.00 0.00 0.00 2.52
3753 4517 8.642935 TCATATAAATCCAAAAGGTGTGTCAA 57.357 30.769 0.00 0.00 0.00 3.18
3770 4534 7.987750 TGTTACAAGGTGCAGTTCATATAAA 57.012 32.000 0.00 0.00 0.00 1.40
3771 4535 7.094549 GGTTGTTACAAGGTGCAGTTCATATAA 60.095 37.037 0.00 0.00 0.00 0.98
3785 4549 6.834168 ACAGGATATTTGGTTGTTACAAGG 57.166 37.500 0.00 0.00 0.00 3.61
3843 4607 4.977741 TTTCCGAATACGTCACTGTTTC 57.022 40.909 0.00 0.00 37.88 2.78
3881 4645 3.059325 CACTGGAAAAGCTGAAGAAGTCG 60.059 47.826 0.00 0.00 0.00 4.18
3893 4657 2.810852 GTCCTTCTCAGCACTGGAAAAG 59.189 50.000 0.00 0.26 0.00 2.27
3900 4664 1.123861 TGCCTGTCCTTCTCAGCACT 61.124 55.000 0.00 0.00 0.00 4.40
3911 4675 3.193479 CCTAAGGAAATTTGTGCCTGTCC 59.807 47.826 0.00 0.00 31.06 4.02
3973 4740 7.088905 AGTGTTTATTTCCAGTAGTGACTACG 58.911 38.462 16.30 11.32 41.37 3.51
3991 4758 7.593273 CCAAGTTATTTCATTGCGAAGTGTTTA 59.407 33.333 0.00 0.00 34.32 2.01
4000 4767 3.508744 AGCCCAAGTTATTTCATTGCG 57.491 42.857 0.00 0.00 0.00 4.85
4072 4839 4.943705 ACTTGTAAGTATACGTCGGGAGAA 59.056 41.667 0.00 0.00 37.94 2.87
4114 4882 7.443575 GCCTACCTAAGTAAACTAAAATAGGCC 59.556 40.741 16.91 0.00 43.33 5.19
4142 4910 5.415701 AGATGTGGTTTTGATAGAAATGCGT 59.584 36.000 0.00 0.00 0.00 5.24
4143 4911 5.740569 CAGATGTGGTTTTGATAGAAATGCG 59.259 40.000 0.00 0.00 0.00 4.73
4155 4933 3.772025 TCCACCAAAACAGATGTGGTTTT 59.228 39.130 2.56 0.83 40.97 2.43
4156 4934 3.132111 GTCCACCAAAACAGATGTGGTTT 59.868 43.478 0.00 0.00 44.88 3.27
4157 4935 2.693074 GTCCACCAAAACAGATGTGGTT 59.307 45.455 7.34 0.00 43.19 3.67
4158 4936 2.306847 GTCCACCAAAACAGATGTGGT 58.693 47.619 7.34 0.00 46.72 4.16
4160 4938 1.613437 GGGTCCACCAAAACAGATGTG 59.387 52.381 0.00 0.00 39.85 3.21
4161 4939 1.499007 AGGGTCCACCAAAACAGATGT 59.501 47.619 0.00 0.00 43.89 3.06
4162 4940 2.292828 AGGGTCCACCAAAACAGATG 57.707 50.000 0.00 0.00 43.89 2.90
4163 4941 4.463050 TTTAGGGTCCACCAAAACAGAT 57.537 40.909 0.00 0.00 43.89 2.90
4164 4942 3.955524 TTTAGGGTCCACCAAAACAGA 57.044 42.857 0.00 0.00 43.89 3.41
4165 4943 5.545063 ATTTTTAGGGTCCACCAAAACAG 57.455 39.130 0.00 0.00 43.89 3.16
4166 4944 5.959583 AATTTTTAGGGTCCACCAAAACA 57.040 34.783 0.00 0.00 43.89 2.83
4167 4945 8.734218 TTTTAATTTTTAGGGTCCACCAAAAC 57.266 30.769 0.00 0.00 43.89 2.43
4168 4946 9.343539 CATTTTAATTTTTAGGGTCCACCAAAA 57.656 29.630 0.00 0.00 43.89 2.44
4169 4947 8.714906 TCATTTTAATTTTTAGGGTCCACCAAA 58.285 29.630 0.00 0.00 43.89 3.28
4170 4948 8.263854 TCATTTTAATTTTTAGGGTCCACCAA 57.736 30.769 0.00 0.00 43.89 3.67
4171 4949 7.857404 TCATTTTAATTTTTAGGGTCCACCA 57.143 32.000 0.00 0.00 43.89 4.17
4172 4950 8.536175 TGATCATTTTAATTTTTAGGGTCCACC 58.464 33.333 0.00 0.00 40.67 4.61
4325 5142 3.965209 TTCGACAAAACTCGATTAGCG 57.035 42.857 0.00 0.00 42.14 4.26
4404 5223 9.860898 GGAATAACAAGATTGAGTTAGCAAATT 57.139 29.630 0.00 0.00 34.10 1.82
4588 5407 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4589 5408 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
4591 5410 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4592 5411 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4594 5413 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
4595 5414 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
4596 5415 1.717194 TGCGACAAGTAATTCCGGAC 58.283 50.000 1.83 0.00 0.00 4.79
4597 5416 2.459060 TTGCGACAAGTAATTCCGGA 57.541 45.000 0.00 0.00 0.00 5.14
4598 5417 3.546002 TTTTGCGACAAGTAATTCCGG 57.454 42.857 0.00 0.00 0.00 5.14
4599 5418 5.150683 TCATTTTTGCGACAAGTAATTCCG 58.849 37.500 0.00 0.00 0.00 4.30
4600 5419 7.401484 TTTCATTTTTGCGACAAGTAATTCC 57.599 32.000 0.00 0.00 0.00 3.01
4601 5420 7.951565 CCATTTCATTTTTGCGACAAGTAATTC 59.048 33.333 0.00 0.00 0.00 2.17
4602 5421 7.655328 TCCATTTCATTTTTGCGACAAGTAATT 59.345 29.630 0.00 0.00 0.00 1.40
4603 5422 7.151308 TCCATTTCATTTTTGCGACAAGTAAT 58.849 30.769 0.00 0.00 0.00 1.89
4604 5423 6.507900 TCCATTTCATTTTTGCGACAAGTAA 58.492 32.000 0.00 0.00 0.00 2.24
4605 5424 6.078202 TCCATTTCATTTTTGCGACAAGTA 57.922 33.333 0.00 0.00 0.00 2.24
4606 5425 4.942852 TCCATTTCATTTTTGCGACAAGT 58.057 34.783 0.00 0.00 0.00 3.16
4607 5426 5.406175 ACATCCATTTCATTTTTGCGACAAG 59.594 36.000 0.00 0.00 0.00 3.16
4608 5427 5.295950 ACATCCATTTCATTTTTGCGACAA 58.704 33.333 0.00 0.00 0.00 3.18
4609 5428 4.880759 ACATCCATTTCATTTTTGCGACA 58.119 34.783 0.00 0.00 0.00 4.35
4610 5429 6.974622 AGATACATCCATTTCATTTTTGCGAC 59.025 34.615 0.00 0.00 0.00 5.19
4611 5430 7.099266 AGATACATCCATTTCATTTTTGCGA 57.901 32.000 0.00 0.00 0.00 5.10
4612 5431 8.344831 TCTAGATACATCCATTTCATTTTTGCG 58.655 33.333 0.00 0.00 0.00 4.85
4643 5462 9.915629 GAGAAATGGATGTATCTAGACGTATTT 57.084 33.333 0.00 0.00 0.00 1.40
4644 5463 9.303116 AGAGAAATGGATGTATCTAGACGTATT 57.697 33.333 0.00 0.00 0.00 1.89
4645 5464 8.735315 CAGAGAAATGGATGTATCTAGACGTAT 58.265 37.037 0.00 0.00 0.00 3.06
4646 5465 7.937394 TCAGAGAAATGGATGTATCTAGACGTA 59.063 37.037 0.00 0.00 0.00 3.57
4647 5466 6.773200 TCAGAGAAATGGATGTATCTAGACGT 59.227 38.462 0.00 0.00 0.00 4.34
4648 5467 7.081349 GTCAGAGAAATGGATGTATCTAGACG 58.919 42.308 0.00 0.00 0.00 4.18
4649 5468 7.946207 TGTCAGAGAAATGGATGTATCTAGAC 58.054 38.462 0.00 0.00 32.25 2.59
4650 5469 8.539117 TTGTCAGAGAAATGGATGTATCTAGA 57.461 34.615 0.00 0.00 0.00 2.43
4651 5470 8.420222 ACTTGTCAGAGAAATGGATGTATCTAG 58.580 37.037 0.00 0.00 0.00 2.43
4652 5471 8.311395 ACTTGTCAGAGAAATGGATGTATCTA 57.689 34.615 0.00 0.00 0.00 1.98
4653 5472 7.192852 ACTTGTCAGAGAAATGGATGTATCT 57.807 36.000 0.00 0.00 0.00 1.98
4654 5473 8.948631 TTACTTGTCAGAGAAATGGATGTATC 57.051 34.615 0.00 0.00 0.00 2.24
4655 5474 9.911788 AATTACTTGTCAGAGAAATGGATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
4656 5475 9.383519 GAATTACTTGTCAGAGAAATGGATGTA 57.616 33.333 0.00 0.00 0.00 2.29
4657 5476 7.337942 GGAATTACTTGTCAGAGAAATGGATGT 59.662 37.037 0.00 0.00 0.00 3.06
4658 5477 7.466455 CGGAATTACTTGTCAGAGAAATGGATG 60.466 40.741 0.00 0.00 0.00 3.51
4659 5478 6.540189 CGGAATTACTTGTCAGAGAAATGGAT 59.460 38.462 0.00 0.00 0.00 3.41
4660 5479 5.874810 CGGAATTACTTGTCAGAGAAATGGA 59.125 40.000 0.00 0.00 0.00 3.41
4661 5480 5.065218 CCGGAATTACTTGTCAGAGAAATGG 59.935 44.000 0.00 0.00 0.00 3.16
4662 5481 5.874810 TCCGGAATTACTTGTCAGAGAAATG 59.125 40.000 0.00 0.00 0.00 2.32
4663 5482 5.875359 GTCCGGAATTACTTGTCAGAGAAAT 59.125 40.000 5.23 0.00 0.00 2.17
4664 5483 5.235516 GTCCGGAATTACTTGTCAGAGAAA 58.764 41.667 5.23 0.00 0.00 2.52
4665 5484 4.617530 CGTCCGGAATTACTTGTCAGAGAA 60.618 45.833 5.23 0.00 0.00 2.87
4666 5485 3.119602 CGTCCGGAATTACTTGTCAGAGA 60.120 47.826 5.23 0.00 0.00 3.10
4667 5486 3.179830 CGTCCGGAATTACTTGTCAGAG 58.820 50.000 5.23 0.00 0.00 3.35
4668 5487 2.094390 CCGTCCGGAATTACTTGTCAGA 60.094 50.000 5.23 0.00 37.50 3.27
4669 5488 2.094390 TCCGTCCGGAATTACTTGTCAG 60.094 50.000 5.23 0.00 42.05 3.51
4670 5489 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4671 5490 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4672 5491 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4673 5492 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4674 5493 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
4675 5494 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
4676 5495 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
4677 5496 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
4678 5497 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
4679 5498 0.187851 ATACTCCCTCCGTCCGGAAT 59.812 55.000 5.23 0.00 44.66 3.01
4680 5499 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
4681 5500 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
4682 5501 1.174783 CATATACTCCCTCCGTCCGG 58.825 60.000 0.00 0.00 0.00 5.14
4683 5502 1.906990 ACATATACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
4684 5503 5.997384 ATTAACATATACTCCCTCCGTCC 57.003 43.478 0.00 0.00 0.00 4.79
4685 5504 7.700022 AGTATTAACATATACTCCCTCCGTC 57.300 40.000 0.00 0.00 36.81 4.79
4686 5505 8.389366 ACTAGTATTAACATATACTCCCTCCGT 58.611 37.037 0.00 0.00 40.74 4.69
4687 5506 8.804912 ACTAGTATTAACATATACTCCCTCCG 57.195 38.462 0.00 0.00 40.74 4.63
4708 5527 8.522830 ACACATGGAAATGGAATGTTTTACTAG 58.477 33.333 0.00 0.00 32.27 2.57
4731 5550 7.384115 GGCTTTTTAGTGAGGGAAAATTAACAC 59.616 37.037 0.00 0.00 0.00 3.32
4757 5576 0.739462 TTGTGCAAGGAGCCGATACG 60.739 55.000 0.00 0.00 44.83 3.06
4877 5696 7.226918 TGTTTGGATTTCACTACACGATTAACA 59.773 33.333 0.00 0.00 0.00 2.41
4896 5715 1.410517 TCATTTTTGCCGCTGTTTGGA 59.589 42.857 0.00 0.00 0.00 3.53
4914 5733 5.181056 AGCATACATGTGAAATCGTTGTTCA 59.819 36.000 9.11 0.00 32.62 3.18
5016 5835 9.547753 GCTCATACTTCAATCCAGAGTTAATTA 57.452 33.333 0.00 0.00 0.00 1.40
5106 5926 9.696572 AGAAGTGTTAATATCTCACACCTACTA 57.303 33.333 7.91 0.00 41.55 1.82
5144 5965 0.808755 CATGTCATGCAAGCAGCTGA 59.191 50.000 20.43 0.00 45.94 4.26
5365 6188 2.309613 TGCCATCACCTGCCATATTTC 58.690 47.619 0.00 0.00 0.00 2.17
5569 6392 5.670485 TCTGTTTCAAGAACTAGTGCTTGA 58.330 37.500 33.75 33.75 46.20 3.02
5599 6422 7.801783 GGCAAATAGTTCAGTAAGTAACAACAC 59.198 37.037 0.00 0.00 0.00 3.32
5675 6498 2.030457 AGAACGTTTCTTCGCAACACAG 59.970 45.455 0.46 0.00 36.36 3.66
5815 6638 0.179100 TAACTCTGCATCAGCCGCTC 60.179 55.000 0.00 0.00 41.13 5.03
5865 6688 7.808856 GTCGGTATCTTCACTATCTAATGGTTC 59.191 40.741 0.00 0.00 0.00 3.62
5878 6701 4.174762 GTCCTCTTTGTCGGTATCTTCAC 58.825 47.826 0.00 0.00 0.00 3.18
6108 6931 3.010420 TGTAGAGATGTCGAGGTGTCTG 58.990 50.000 6.84 0.00 0.00 3.51
6324 7147 1.821216 GCTAAGGTGCTAGCAAACCA 58.179 50.000 21.29 4.56 43.25 3.67
6331 7154 3.726607 CTTCTGGATGCTAAGGTGCTAG 58.273 50.000 0.00 0.00 0.00 3.42
6332 7155 2.158900 GCTTCTGGATGCTAAGGTGCTA 60.159 50.000 1.93 0.00 0.00 3.49
6333 7156 1.407989 GCTTCTGGATGCTAAGGTGCT 60.408 52.381 1.93 0.00 0.00 4.40
6334 7157 1.020437 GCTTCTGGATGCTAAGGTGC 58.980 55.000 1.93 0.00 0.00 5.01
6335 7158 2.286872 CAGCTTCTGGATGCTAAGGTG 58.713 52.381 14.15 14.15 40.89 4.00
6336 7159 1.912043 ACAGCTTCTGGATGCTAAGGT 59.088 47.619 9.99 3.34 39.43 3.50
6337 7160 2.706339 ACAGCTTCTGGATGCTAAGG 57.294 50.000 9.99 2.82 39.43 2.69
6338 7161 6.593382 GGATTATACAGCTTCTGGATGCTAAG 59.407 42.308 9.99 3.40 35.56 2.18
6339 7162 6.270927 AGGATTATACAGCTTCTGGATGCTAA 59.729 38.462 9.99 3.25 35.56 3.09
6340 7163 5.782331 AGGATTATACAGCTTCTGGATGCTA 59.218 40.000 9.99 0.00 35.56 3.49
6341 7164 4.596643 AGGATTATACAGCTTCTGGATGCT 59.403 41.667 1.94 5.35 35.56 3.79
6342 7165 4.904241 AGGATTATACAGCTTCTGGATGC 58.096 43.478 1.94 0.98 35.56 3.91
6343 7166 7.675062 ACTAAGGATTATACAGCTTCTGGATG 58.325 38.462 1.94 0.00 35.56 3.51
6344 7167 7.863901 ACTAAGGATTATACAGCTTCTGGAT 57.136 36.000 0.00 0.00 38.71 3.41
6345 7168 7.344612 TCAACTAAGGATTATACAGCTTCTGGA 59.655 37.037 0.00 0.00 35.51 3.86
6346 7169 7.439655 GTCAACTAAGGATTATACAGCTTCTGG 59.560 40.741 0.00 0.00 35.51 3.86
6347 7170 8.200792 AGTCAACTAAGGATTATACAGCTTCTG 58.799 37.037 0.00 0.00 37.52 3.02
6348 7171 8.312669 AGTCAACTAAGGATTATACAGCTTCT 57.687 34.615 0.00 0.00 0.00 2.85
6349 7172 8.950208 AAGTCAACTAAGGATTATACAGCTTC 57.050 34.615 0.00 0.00 0.00 3.86
6350 7173 9.167311 CAAAGTCAACTAAGGATTATACAGCTT 57.833 33.333 0.00 0.00 0.00 3.74
6351 7174 8.322091 ACAAAGTCAACTAAGGATTATACAGCT 58.678 33.333 0.00 0.00 0.00 4.24
6352 7175 8.494016 ACAAAGTCAACTAAGGATTATACAGC 57.506 34.615 0.00 0.00 0.00 4.40
6357 7180 9.574516 AACAGAACAAAGTCAACTAAGGATTAT 57.425 29.630 0.00 0.00 0.00 1.28
6358 7181 8.836413 CAACAGAACAAAGTCAACTAAGGATTA 58.164 33.333 0.00 0.00 0.00 1.75
6359 7182 7.556275 TCAACAGAACAAAGTCAACTAAGGATT 59.444 33.333 0.00 0.00 0.00 3.01
6360 7183 7.054124 TCAACAGAACAAAGTCAACTAAGGAT 58.946 34.615 0.00 0.00 0.00 3.24
6361 7184 6.411376 TCAACAGAACAAAGTCAACTAAGGA 58.589 36.000 0.00 0.00 0.00 3.36
6362 7185 6.677781 TCAACAGAACAAAGTCAACTAAGG 57.322 37.500 0.00 0.00 0.00 2.69
6473 7317 1.682323 GGAACGGAGGGAGTAGATGAC 59.318 57.143 0.00 0.00 0.00 3.06
6494 7338 7.512297 TGAACTAAAACCACGACGAATAAATC 58.488 34.615 0.00 0.00 0.00 2.17
6495 7339 7.424227 TGAACTAAAACCACGACGAATAAAT 57.576 32.000 0.00 0.00 0.00 1.40
6496 7340 6.841443 TGAACTAAAACCACGACGAATAAA 57.159 33.333 0.00 0.00 0.00 1.40
6497 7341 6.841443 TTGAACTAAAACCACGACGAATAA 57.159 33.333 0.00 0.00 0.00 1.40
6498 7342 6.841443 TTTGAACTAAAACCACGACGAATA 57.159 33.333 0.00 0.00 0.00 1.75
6499 7343 5.738118 TTTGAACTAAAACCACGACGAAT 57.262 34.783 0.00 0.00 0.00 3.34
6500 7344 5.738118 ATTTGAACTAAAACCACGACGAA 57.262 34.783 0.00 0.00 0.00 3.85
6501 7345 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
6502 7346 5.557405 CGTAATTTGAACTAAAACCACGACG 59.443 40.000 0.00 0.00 35.00 5.12
6503 7347 6.648502 TCGTAATTTGAACTAAAACCACGAC 58.351 36.000 0.00 0.00 36.13 4.34
6504 7348 6.479660 ACTCGTAATTTGAACTAAAACCACGA 59.520 34.615 0.00 0.00 37.40 4.35
6505 7349 6.652245 ACTCGTAATTTGAACTAAAACCACG 58.348 36.000 0.00 0.00 34.67 4.94
6506 7350 9.934190 TTTACTCGTAATTTGAACTAAAACCAC 57.066 29.630 0.00 0.00 0.00 4.16
6514 7358 8.433126 CGTTCTGATTTACTCGTAATTTGAACT 58.567 33.333 17.12 0.00 30.83 3.01
6515 7359 7.686938 CCGTTCTGATTTACTCGTAATTTGAAC 59.313 37.037 0.00 0.00 0.00 3.18
6516 7360 7.599621 TCCGTTCTGATTTACTCGTAATTTGAA 59.400 33.333 0.00 0.00 0.00 2.69
6517 7361 7.092079 TCCGTTCTGATTTACTCGTAATTTGA 58.908 34.615 0.00 0.00 0.00 2.69
6518 7362 7.285783 TCCGTTCTGATTTACTCGTAATTTG 57.714 36.000 0.00 0.00 0.00 2.32
6519 7363 6.534079 CCTCCGTTCTGATTTACTCGTAATTT 59.466 38.462 0.00 0.00 0.00 1.82
6520 7364 6.040878 CCTCCGTTCTGATTTACTCGTAATT 58.959 40.000 0.00 0.00 0.00 1.40
6521 7365 5.451520 CCCTCCGTTCTGATTTACTCGTAAT 60.452 44.000 0.00 0.00 0.00 1.89
6522 7366 4.142315 CCCTCCGTTCTGATTTACTCGTAA 60.142 45.833 0.00 0.00 0.00 3.18
6523 7367 3.379372 CCCTCCGTTCTGATTTACTCGTA 59.621 47.826 0.00 0.00 0.00 3.43
6524 7368 2.165845 CCCTCCGTTCTGATTTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
6525 7369 2.426024 TCCCTCCGTTCTGATTTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
6526 7370 3.447944 ACTCCCTCCGTTCTGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
6527 7371 3.442076 ACTCCCTCCGTTCTGATTTACT 58.558 45.455 0.00 0.00 0.00 2.24
6528 7372 3.889520 ACTCCCTCCGTTCTGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
6529 7373 6.837568 ACTTATACTCCCTCCGTTCTGATTTA 59.162 38.462 0.00 0.00 0.00 1.40
6530 7374 5.661759 ACTTATACTCCCTCCGTTCTGATTT 59.338 40.000 0.00 0.00 0.00 2.17
6531 7375 5.209659 ACTTATACTCCCTCCGTTCTGATT 58.790 41.667 0.00 0.00 0.00 2.57
6532 7376 4.805744 ACTTATACTCCCTCCGTTCTGAT 58.194 43.478 0.00 0.00 0.00 2.90
6533 7377 4.246712 ACTTATACTCCCTCCGTTCTGA 57.753 45.455 0.00 0.00 0.00 3.27
6534 7378 5.826737 TCTAACTTATACTCCCTCCGTTCTG 59.173 44.000 0.00 0.00 0.00 3.02
6535 7379 6.011122 TCTAACTTATACTCCCTCCGTTCT 57.989 41.667 0.00 0.00 0.00 3.01
6536 7380 6.897706 ATCTAACTTATACTCCCTCCGTTC 57.102 41.667 0.00 0.00 0.00 3.95
6537 7381 6.041751 CCAATCTAACTTATACTCCCTCCGTT 59.958 42.308 0.00 0.00 0.00 4.44
6538 7382 5.539193 CCAATCTAACTTATACTCCCTCCGT 59.461 44.000 0.00 0.00 0.00 4.69
6539 7383 5.567025 GCCAATCTAACTTATACTCCCTCCG 60.567 48.000 0.00 0.00 0.00 4.63
6540 7384 5.544562 AGCCAATCTAACTTATACTCCCTCC 59.455 44.000 0.00 0.00 0.00 4.30
6541 7385 6.673839 AGCCAATCTAACTTATACTCCCTC 57.326 41.667 0.00 0.00 0.00 4.30
6581 7425 5.469084 ACCTTCTGAACAAACGGTTAAGATC 59.531 40.000 0.00 0.00 44.73 2.75
6780 7624 5.876357 ACCACACAAAGCTTCTAAATAGGA 58.124 37.500 0.00 0.00 0.00 2.94
6866 7710 2.044555 GGTTCGCCTAAAGGGGTGC 61.045 63.158 12.32 6.94 46.93 5.01
6880 7724 4.401837 ACAAGAGATAACTAGGGACGGTTC 59.598 45.833 0.00 0.00 32.55 3.62
6903 7749 5.357742 TGCAAATGTAGGCAGAGATTAGA 57.642 39.130 0.00 0.00 34.58 2.10
7001 7857 8.927675 ACTCTCTATAATTAACGTGATCCTCT 57.072 34.615 0.00 0.00 0.00 3.69
7060 11642 8.695456 TCTAATGCTCAATGATAGTACTTCACA 58.305 33.333 0.00 0.00 0.00 3.58
7061 11643 8.973378 GTCTAATGCTCAATGATAGTACTTCAC 58.027 37.037 0.00 0.00 0.00 3.18
7076 11658 1.964223 GATCCTCCCGTCTAATGCTCA 59.036 52.381 0.00 0.00 0.00 4.26
7089 11671 7.911651 TCTCTCCATAATTAACATGATCCTCC 58.088 38.462 0.00 0.00 0.00 4.30
7125 11708 4.559704 GCTATTAGTGATCCTCCCGTTCAG 60.560 50.000 0.00 0.00 0.00 3.02
7209 11793 7.429636 TCTTAACAAAATTAAGGTCGTGAGG 57.570 36.000 6.59 0.00 33.88 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.