Multiple sequence alignment - TraesCS5D01G102700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G102700 chr5D 100.000 2501 0 0 1 2501 115976422 115973922 0.000000e+00 4619.0
1 TraesCS5D01G102700 chr5D 86.650 397 35 5 2074 2452 416229510 416229114 8.270000e-115 424.0
2 TraesCS5D01G102700 chr5D 80.151 529 53 20 60 552 485203442 485202930 5.120000e-92 348.0
3 TraesCS5D01G102700 chr5D 79.317 527 69 18 58 551 43078241 43078760 1.430000e-87 333.0
4 TraesCS5D01G102700 chr5D 90.135 223 21 1 1813 2034 498465138 498464916 3.150000e-74 289.0
5 TraesCS5D01G102700 chr5D 93.333 60 4 0 2 61 43077911 43077970 3.430000e-14 89.8
6 TraesCS5D01G102700 chr5A 93.416 1215 56 10 613 1810 122998295 122997088 0.000000e+00 1779.0
7 TraesCS5D01G102700 chr5A 88.550 393 29 4 2075 2451 35830879 35831271 1.750000e-126 462.0
8 TraesCS5D01G102700 chr5A 91.667 60 5 0 2 61 523029219 523029160 1.590000e-12 84.2
9 TraesCS5D01G102700 chr5A 90.769 65 3 2 549 612 615921780 615921842 1.590000e-12 84.2
10 TraesCS5D01G102700 chr5A 88.333 60 4 2 555 613 407788776 407788719 4.460000e-08 69.4
11 TraesCS5D01G102700 chr5B 92.834 907 48 10 701 1601 127538376 127537481 0.000000e+00 1299.0
12 TraesCS5D01G102700 chr5B 84.615 520 46 14 58 553 158785254 158784745 1.040000e-133 486.0
13 TraesCS5D01G102700 chr5B 90.541 148 14 0 58 205 548833427 548833574 1.960000e-46 196.0
14 TraesCS5D01G102700 chr5B 87.075 147 7 5 1592 1737 127537454 127537319 3.330000e-34 156.0
15 TraesCS5D01G102700 chr5B 93.750 80 5 0 1731 1810 127536732 127536653 1.220000e-23 121.0
16 TraesCS5D01G102700 chr5B 87.097 62 5 2 549 609 620311052 620311111 1.610000e-07 67.6
17 TraesCS5D01G102700 chr6B 91.364 440 22 4 2075 2499 681375331 681375769 2.770000e-164 588.0
18 TraesCS5D01G102700 chr6B 91.803 61 5 0 1 61 77771652 77771712 4.430000e-13 86.1
19 TraesCS5D01G102700 chr1D 90.575 435 26 1 2080 2499 42827254 42827688 1.680000e-156 562.0
20 TraesCS5D01G102700 chr1D 90.265 226 21 1 1809 2034 272535880 272536104 6.770000e-76 294.0
21 TraesCS5D01G102700 chr1D 89.823 226 21 2 1809 2034 445096405 445096628 3.150000e-74 289.0
22 TraesCS5D01G102700 chr1D 87.654 81 8 2 1 79 298633351 298633271 2.650000e-15 93.5
23 TraesCS5D01G102700 chr1D 93.443 61 4 0 1 61 354521089 354521029 9.530000e-15 91.6
24 TraesCS5D01G102700 chr7D 88.303 436 34 2 2081 2499 2222753 2222318 7.980000e-140 507.0
25 TraesCS5D01G102700 chr7D 82.617 535 51 17 58 552 19580271 19579739 3.820000e-118 435.0
26 TraesCS5D01G102700 chr7D 81.664 529 56 14 60 552 32701276 32701799 3.870000e-108 401.0
27 TraesCS5D01G102700 chr7D 80.309 518 61 21 58 537 626900670 626900156 1.100000e-93 353.0
28 TraesCS5D01G102700 chr7D 80.335 478 47 12 60 509 114481569 114482027 4.010000e-83 318.0
29 TraesCS5D01G102700 chr7D 78.870 478 66 16 58 504 573437838 573437365 8.750000e-75 291.0
30 TraesCS5D01G102700 chr7D 91.228 57 2 2 556 611 32701846 32701900 9.590000e-10 75.0
31 TraesCS5D01G102700 chr3D 96.296 297 11 0 2203 2499 446689899 446689603 2.890000e-134 488.0
32 TraesCS5D01G102700 chr3D 86.127 173 9 5 2096 2253 26231435 26231607 3.310000e-39 172.0
33 TraesCS5D01G102700 chr3D 81.726 197 14 7 2074 2248 572121703 572121899 7.210000e-31 145.0
34 TraesCS5D01G102700 chr3D 91.803 61 5 0 1 61 441581870 441581810 4.430000e-13 86.1
35 TraesCS5D01G102700 chr3D 90.476 63 3 2 549 610 274446894 274446834 2.060000e-11 80.5
36 TraesCS5D01G102700 chr3D 90.476 63 3 2 549 610 274673433 274673373 2.060000e-11 80.5
37 TraesCS5D01G102700 chr6D 88.480 408 32 1 2107 2499 22101615 22101208 1.740000e-131 479.0
38 TraesCS5D01G102700 chr1A 88.000 425 18 10 2092 2501 8154497 8154903 2.910000e-129 472.0
39 TraesCS5D01G102700 chr7A 89.730 370 16 5 2074 2428 571677924 571677562 1.050000e-123 453.0
40 TraesCS5D01G102700 chr7A 89.831 59 3 2 555 612 214860652 214860596 3.450000e-09 73.1
41 TraesCS5D01G102700 chr2D 95.307 277 13 0 2223 2499 1913856 1914132 8.210000e-120 440.0
42 TraesCS5D01G102700 chr2D 82.081 519 47 11 58 552 434140929 434140433 3.870000e-108 401.0
43 TraesCS5D01G102700 chr2D 91.111 225 19 1 1809 2032 131775667 131775443 1.120000e-78 303.0
44 TraesCS5D01G102700 chr4B 93.266 297 18 1 2157 2451 601929425 601929129 1.060000e-118 436.0
45 TraesCS5D01G102700 chr6A 83.913 460 47 6 58 493 487210198 487209742 4.980000e-112 414.0
46 TraesCS5D01G102700 chr6A 93.443 61 4 0 1 61 487210351 487210291 9.530000e-15 91.6
47 TraesCS5D01G102700 chr3B 84.887 397 41 12 2076 2453 786115386 786115782 1.400000e-102 383.0
48 TraesCS5D01G102700 chr3B 81.616 359 40 9 58 396 715944367 715944719 8.810000e-70 274.0
49 TraesCS5D01G102700 chr3B 85.283 265 23 11 2079 2327 728257296 728257560 2.470000e-65 259.0
50 TraesCS5D01G102700 chr4A 80.608 526 65 15 58 549 735863089 735862567 3.040000e-99 372.0
51 TraesCS5D01G102700 chr4A 91.150 226 20 0 1809 2034 645686284 645686509 8.690000e-80 307.0
52 TraesCS5D01G102700 chr2B 80.192 520 60 18 58 546 238606068 238606575 1.420000e-92 350.0
53 TraesCS5D01G102700 chr2B 90.308 227 20 2 1809 2034 636877577 636877802 1.880000e-76 296.0
54 TraesCS5D01G102700 chr2B 82.772 267 23 3 58 301 557773242 557772976 1.510000e-52 217.0
55 TraesCS5D01G102700 chr2B 88.889 63 4 3 549 610 579985947 579986007 9.590000e-10 75.0
56 TraesCS5D01G102700 chr4D 92.958 213 15 0 1818 2030 24764360 24764148 6.720000e-81 311.0
57 TraesCS5D01G102700 chr4D 83.636 275 35 7 266 538 417458166 417458432 1.490000e-62 250.0
58 TraesCS5D01G102700 chr4D 94.915 59 3 0 1 59 417432796 417432854 2.650000e-15 93.5
59 TraesCS5D01G102700 chr4D 90.625 64 4 1 551 614 404689800 404689739 1.590000e-12 84.2
60 TraesCS5D01G102700 chr1B 89.407 236 23 2 1800 2034 26425099 26425333 1.880000e-76 296.0
61 TraesCS5D01G102700 chr1B 78.339 277 50 9 203 475 600260498 600260228 1.190000e-38 171.0
62 TraesCS5D01G102700 chr7B 90.265 226 21 1 1810 2034 74865960 74866185 6.770000e-76 294.0
63 TraesCS5D01G102700 chr7B 91.803 61 5 0 1 61 488367031 488367091 4.430000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G102700 chr5D 115973922 115976422 2500 True 4619.000000 4619 100.000000 1 2501 1 chr5D.!!$R1 2500
1 TraesCS5D01G102700 chr5D 485202930 485203442 512 True 348.000000 348 80.151000 60 552 1 chr5D.!!$R3 492
2 TraesCS5D01G102700 chr5D 43077911 43078760 849 False 211.400000 333 86.325000 2 551 2 chr5D.!!$F1 549
3 TraesCS5D01G102700 chr5A 122997088 122998295 1207 True 1779.000000 1779 93.416000 613 1810 1 chr5A.!!$R1 1197
4 TraesCS5D01G102700 chr5B 127536653 127538376 1723 True 525.333333 1299 91.219667 701 1810 3 chr5B.!!$R2 1109
5 TraesCS5D01G102700 chr5B 158784745 158785254 509 True 486.000000 486 84.615000 58 553 1 chr5B.!!$R1 495
6 TraesCS5D01G102700 chr7D 19579739 19580271 532 True 435.000000 435 82.617000 58 552 1 chr7D.!!$R2 494
7 TraesCS5D01G102700 chr7D 626900156 626900670 514 True 353.000000 353 80.309000 58 537 1 chr7D.!!$R4 479
8 TraesCS5D01G102700 chr7D 32701276 32701900 624 False 238.000000 401 86.446000 60 611 2 chr7D.!!$F2 551
9 TraesCS5D01G102700 chr6A 487209742 487210351 609 True 252.800000 414 88.678000 1 493 2 chr6A.!!$R1 492
10 TraesCS5D01G102700 chr4A 735862567 735863089 522 True 372.000000 372 80.608000 58 549 1 chr4A.!!$R1 491
11 TraesCS5D01G102700 chr2B 238606068 238606575 507 False 350.000000 350 80.192000 58 546 1 chr2B.!!$F1 488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 1193 0.036732 ATGCGCTCCAAGAGTCCAAA 59.963 50.0 9.73 0.0 31.39 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 3167 0.030235 GTCGAAGTTGTTTGTGGCCC 59.97 55.0 0.0 0.0 0.0 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.484240 CTCCCTTTTCTCTGGATCGCT 59.516 52.381 0.00 0.00 0.00 4.93
169 445 4.193334 CACGAGGAGATGGCGCGA 62.193 66.667 12.10 0.00 0.00 5.87
288 587 2.579201 CTGGTCAGGGGTGTAGCG 59.421 66.667 0.00 0.00 0.00 4.26
496 832 2.507339 AGTTTGGCCGAATTTGTGTG 57.493 45.000 9.15 0.00 0.00 3.82
498 834 1.067821 GTTTGGCCGAATTTGTGTGGA 59.932 47.619 9.15 0.00 0.00 4.02
505 841 2.360801 CCGAATTTGTGTGGAGTTTGGT 59.639 45.455 0.00 0.00 0.00 3.67
511 847 2.489971 TGTGTGGAGTTTGGTCGAATC 58.510 47.619 0.00 0.00 0.00 2.52
514 850 2.367241 TGTGGAGTTTGGTCGAATCTCA 59.633 45.455 7.66 0.00 33.56 3.27
530 867 2.650322 TCTCAGCCGAGTTTGGTTTTT 58.350 42.857 0.00 0.00 40.44 1.94
583 964 1.032114 GCGCTATTTCAAGCCCCTGT 61.032 55.000 0.00 0.00 39.43 4.00
595 976 3.361977 CCCTGTGGGCCGAAAACG 61.362 66.667 0.00 0.00 35.35 3.60
611 992 4.495422 GAAAACGAGTGGAGATGCTCTTA 58.505 43.478 0.00 0.00 0.00 2.10
615 996 3.511934 ACGAGTGGAGATGCTCTTAGTTT 59.488 43.478 0.00 0.00 0.00 2.66
662 1044 4.635765 GTCTGGTAAGCTATGCAATGTTCA 59.364 41.667 0.00 0.00 0.00 3.18
668 1050 3.889815 AGCTATGCAATGTTCAGCCTAA 58.110 40.909 0.00 0.00 32.58 2.69
669 1051 4.467769 AGCTATGCAATGTTCAGCCTAAT 58.532 39.130 0.00 0.00 32.58 1.73
694 1076 4.729918 CCCAGCCCAGCCACAGTC 62.730 72.222 0.00 0.00 0.00 3.51
699 1097 2.579201 CCCAGCCACAGTCGTAGG 59.421 66.667 0.00 0.00 0.00 3.18
728 1126 2.168106 AGAATAGTCAGCAGCACAGGAG 59.832 50.000 0.00 0.00 0.00 3.69
757 1155 2.462456 AGAAGATTGAACAGCTGCGA 57.538 45.000 15.27 0.00 0.00 5.10
758 1156 2.344950 AGAAGATTGAACAGCTGCGAG 58.655 47.619 15.27 0.00 0.00 5.03
774 1172 2.630098 TGCGAGAAGATATAGCAGCCTT 59.370 45.455 0.00 0.00 33.57 4.35
795 1193 0.036732 ATGCGCTCCAAGAGTCCAAA 59.963 50.000 9.73 0.00 31.39 3.28
864 1262 4.812626 CCTTTGCTTGCTGTGAATTTTTCT 59.187 37.500 0.00 0.00 0.00 2.52
919 1322 1.620323 TGGTCTCACTCATCACCAGTG 59.380 52.381 0.00 0.00 42.40 3.66
1033 1436 1.080772 GTCATCACCGACGAGTGCA 60.081 57.895 10.47 0.00 37.68 4.57
1467 1870 1.219124 GCTCAAGATGGTCGAGGCA 59.781 57.895 0.00 0.00 0.00 4.75
1625 2064 6.932960 AGTATATACCGGTGTTATTTGCTTCC 59.067 38.462 19.93 0.00 0.00 3.46
1818 2851 7.764695 AAGGGTGTTCTTTGTTTATTTTTCG 57.235 32.000 0.00 0.00 0.00 3.46
1819 2852 7.102847 AGGGTGTTCTTTGTTTATTTTTCGA 57.897 32.000 0.00 0.00 0.00 3.71
1820 2853 7.200455 AGGGTGTTCTTTGTTTATTTTTCGAG 58.800 34.615 0.00 0.00 0.00 4.04
1821 2854 7.067737 AGGGTGTTCTTTGTTTATTTTTCGAGA 59.932 33.333 0.00 0.00 0.00 4.04
1822 2855 7.703197 GGGTGTTCTTTGTTTATTTTTCGAGAA 59.297 33.333 0.00 0.00 0.00 2.87
1823 2856 9.078753 GGTGTTCTTTGTTTATTTTTCGAGAAA 57.921 29.630 3.34 3.34 0.00 2.52
1852 2885 8.573885 TCAAATCTATTCATCTTCAATCATGGC 58.426 33.333 0.00 0.00 0.00 4.40
1853 2886 8.357402 CAAATCTATTCATCTTCAATCATGGCA 58.643 33.333 0.00 0.00 0.00 4.92
1854 2887 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
1855 2888 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
1856 2889 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
1857 2890 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
1858 2891 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
1859 2892 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
1860 2893 5.945191 TCATCTTCAATCATGGCAGTACAAA 59.055 36.000 0.00 0.00 0.00 2.83
1861 2894 6.433716 TCATCTTCAATCATGGCAGTACAAAA 59.566 34.615 0.00 0.00 0.00 2.44
1862 2895 6.647334 TCTTCAATCATGGCAGTACAAAAA 57.353 33.333 0.00 0.00 0.00 1.94
1895 2928 8.996024 AGGTAATAAAAATTACAACCATGTGC 57.004 30.769 9.72 0.00 40.84 4.57
1896 2929 7.757624 AGGTAATAAAAATTACAACCATGTGCG 59.242 33.333 9.72 0.00 40.84 5.34
1897 2930 7.542824 GGTAATAAAAATTACAACCATGTGCGT 59.457 33.333 9.72 0.00 40.84 5.24
1898 2931 6.942886 ATAAAAATTACAACCATGTGCGTG 57.057 33.333 0.00 0.00 40.84 5.34
1899 2932 3.296322 AAATTACAACCATGTGCGTGG 57.704 42.857 8.76 8.76 45.04 4.94
1900 2933 2.192664 ATTACAACCATGTGCGTGGA 57.807 45.000 16.53 0.00 42.02 4.02
1901 2934 1.231221 TTACAACCATGTGCGTGGAC 58.769 50.000 16.53 0.00 42.02 4.02
1902 2935 0.604243 TACAACCATGTGCGTGGACC 60.604 55.000 16.53 0.00 42.02 4.46
1903 2936 1.896183 CAACCATGTGCGTGGACCA 60.896 57.895 16.53 0.00 42.02 4.02
1904 2937 1.896660 AACCATGTGCGTGGACCAC 60.897 57.895 15.13 15.13 42.02 4.16
1905 2938 3.055719 CCATGTGCGTGGACCACC 61.056 66.667 19.11 11.99 42.02 4.61
1906 2939 2.032528 CATGTGCGTGGACCACCT 59.967 61.111 19.11 0.00 37.04 4.00
1907 2940 1.295101 CATGTGCGTGGACCACCTA 59.705 57.895 19.11 5.21 37.04 3.08
1908 2941 0.740868 CATGTGCGTGGACCACCTAG 60.741 60.000 19.11 6.34 37.04 3.02
1909 2942 2.434359 GTGCGTGGACCACCTAGC 60.434 66.667 19.11 16.35 38.78 3.42
1910 2943 4.063967 TGCGTGGACCACCTAGCG 62.064 66.667 19.11 8.04 40.20 4.26
1911 2944 3.755628 GCGTGGACCACCTAGCGA 61.756 66.667 19.11 0.00 37.04 4.93
1912 2945 2.181021 CGTGGACCACCTAGCGAC 59.819 66.667 19.11 0.00 37.04 5.19
1913 2946 2.632544 CGTGGACCACCTAGCGACA 61.633 63.158 19.11 0.00 37.04 4.35
1914 2947 1.669440 GTGGACCACCTAGCGACAA 59.331 57.895 14.16 0.00 37.04 3.18
1915 2948 0.669625 GTGGACCACCTAGCGACAAC 60.670 60.000 14.16 0.00 37.04 3.32
1916 2949 0.830444 TGGACCACCTAGCGACAACT 60.830 55.000 0.00 0.00 37.04 3.16
1917 2950 1.180029 GGACCACCTAGCGACAACTA 58.820 55.000 0.00 0.00 0.00 2.24
1918 2951 1.135170 GGACCACCTAGCGACAACTAC 60.135 57.143 0.00 0.00 0.00 2.73
1919 2952 1.542915 GACCACCTAGCGACAACTACA 59.457 52.381 0.00 0.00 0.00 2.74
1920 2953 1.965643 ACCACCTAGCGACAACTACAA 59.034 47.619 0.00 0.00 0.00 2.41
1921 2954 2.029290 ACCACCTAGCGACAACTACAAG 60.029 50.000 0.00 0.00 0.00 3.16
1922 2955 2.029290 CCACCTAGCGACAACTACAAGT 60.029 50.000 0.00 0.00 0.00 3.16
1923 2956 3.192001 CCACCTAGCGACAACTACAAGTA 59.808 47.826 0.00 0.00 0.00 2.24
1924 2957 4.164294 CACCTAGCGACAACTACAAGTAC 58.836 47.826 0.00 0.00 0.00 2.73
1925 2958 4.077822 ACCTAGCGACAACTACAAGTACT 58.922 43.478 0.00 0.00 0.00 2.73
1926 2959 4.082895 ACCTAGCGACAACTACAAGTACTG 60.083 45.833 0.00 0.00 0.00 2.74
1927 2960 3.299340 AGCGACAACTACAAGTACTGG 57.701 47.619 0.00 0.00 0.00 4.00
1928 2961 2.889045 AGCGACAACTACAAGTACTGGA 59.111 45.455 3.64 0.00 0.00 3.86
1929 2962 3.057456 AGCGACAACTACAAGTACTGGAG 60.057 47.826 3.64 3.70 42.47 3.86
1930 2963 3.243336 CGACAACTACAAGTACTGGAGC 58.757 50.000 3.64 0.00 40.05 4.70
1931 2964 3.243336 GACAACTACAAGTACTGGAGCG 58.757 50.000 3.64 0.00 40.05 5.03
1932 2965 2.889045 ACAACTACAAGTACTGGAGCGA 59.111 45.455 3.64 0.00 40.05 4.93
1933 2966 3.057456 ACAACTACAAGTACTGGAGCGAG 60.057 47.826 3.64 0.00 40.05 5.03
1934 2967 1.473278 ACTACAAGTACTGGAGCGAGC 59.527 52.381 3.64 0.00 40.05 5.03
1935 2968 0.815734 TACAAGTACTGGAGCGAGCC 59.184 55.000 3.64 0.00 0.00 4.70
1936 2969 1.185618 ACAAGTACTGGAGCGAGCCA 61.186 55.000 3.64 0.00 36.30 4.75
1937 2970 0.037326 CAAGTACTGGAGCGAGCCAA 60.037 55.000 0.00 0.00 37.52 4.52
1938 2971 0.685097 AAGTACTGGAGCGAGCCAAA 59.315 50.000 0.00 0.00 37.52 3.28
1939 2972 0.247736 AGTACTGGAGCGAGCCAAAG 59.752 55.000 0.00 0.00 37.52 2.77
1940 2973 0.741221 GTACTGGAGCGAGCCAAAGG 60.741 60.000 0.00 0.00 37.52 3.11
1952 2985 4.025401 CAAAGGCGTGCCACCGTC 62.025 66.667 14.29 0.00 38.92 4.79
1953 2986 4.555709 AAAGGCGTGCCACCGTCA 62.556 61.111 14.29 0.00 38.92 4.35
1954 2987 3.842925 AAAGGCGTGCCACCGTCAT 62.843 57.895 14.29 0.00 38.92 3.06
1955 2988 4.760047 AGGCGTGCCACCGTCATC 62.760 66.667 14.29 0.00 38.92 2.92
1962 2995 4.530857 CCACCGTCATCGCCCCTC 62.531 72.222 0.00 0.00 35.54 4.30
1963 2996 4.530857 CACCGTCATCGCCCCTCC 62.531 72.222 0.00 0.00 35.54 4.30
1966 2999 3.917760 CGTCATCGCCCCTCCCTC 61.918 72.222 0.00 0.00 0.00 4.30
1967 3000 2.764128 GTCATCGCCCCTCCCTCA 60.764 66.667 0.00 0.00 0.00 3.86
1968 3001 2.764128 TCATCGCCCCTCCCTCAC 60.764 66.667 0.00 0.00 0.00 3.51
1969 3002 2.765807 CATCGCCCCTCCCTCACT 60.766 66.667 0.00 0.00 0.00 3.41
1970 3003 2.765807 ATCGCCCCTCCCTCACTG 60.766 66.667 0.00 0.00 0.00 3.66
1977 3010 3.307445 CTCCCTCACTGGAGCCAG 58.693 66.667 14.78 14.78 45.13 4.85
1978 3011 2.365586 CTCCCTCACTGGAGCCAGG 61.366 68.421 19.90 9.53 45.13 4.45
1999 3032 4.638304 GGCAAACCTTCTTGTAGTAGACA 58.362 43.478 0.00 0.00 35.78 3.41
2000 3033 4.691216 GGCAAACCTTCTTGTAGTAGACAG 59.309 45.833 0.00 0.00 39.88 3.51
2001 3034 5.298347 GCAAACCTTCTTGTAGTAGACAGT 58.702 41.667 0.00 0.00 39.88 3.55
2002 3035 5.405873 GCAAACCTTCTTGTAGTAGACAGTC 59.594 44.000 0.00 0.00 39.88 3.51
2003 3036 5.373981 AACCTTCTTGTAGTAGACAGTCG 57.626 43.478 0.00 0.00 39.88 4.18
2004 3037 3.757493 ACCTTCTTGTAGTAGACAGTCGG 59.243 47.826 0.00 0.00 39.88 4.79
2005 3038 3.128938 CCTTCTTGTAGTAGACAGTCGGG 59.871 52.174 0.00 0.00 39.88 5.14
2006 3039 3.708403 TCTTGTAGTAGACAGTCGGGA 57.292 47.619 0.00 0.00 39.88 5.14
2007 3040 4.025040 TCTTGTAGTAGACAGTCGGGAA 57.975 45.455 0.00 0.00 39.88 3.97
2008 3041 4.008330 TCTTGTAGTAGACAGTCGGGAAG 58.992 47.826 0.00 0.00 39.88 3.46
2009 3042 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
2010 3043 3.341823 TGTAGTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 32.86 3.01
2011 3044 1.451067 AGTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
2012 3045 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
2013 3046 1.130186 GTAGACAGTCGGGAAGTCGTC 59.870 57.143 0.00 0.00 37.36 4.20
2014 3047 1.154263 GACAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
2015 3048 1.849976 GACAGTCGGGAAGTCGTCGT 61.850 60.000 0.00 0.00 0.00 4.34
2016 3049 1.442184 CAGTCGGGAAGTCGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
2017 3050 2.804090 GTCGGGAAGTCGTCGTGC 60.804 66.667 0.00 0.00 0.00 5.34
2018 3051 2.981909 TCGGGAAGTCGTCGTGCT 60.982 61.111 0.00 0.00 0.00 4.40
2019 3052 1.672030 TCGGGAAGTCGTCGTGCTA 60.672 57.895 0.00 0.00 0.00 3.49
2020 3053 1.210931 CGGGAAGTCGTCGTGCTAA 59.789 57.895 0.00 0.00 0.00 3.09
2021 3054 0.797249 CGGGAAGTCGTCGTGCTAAG 60.797 60.000 0.00 0.00 0.00 2.18
2022 3055 0.458025 GGGAAGTCGTCGTGCTAAGG 60.458 60.000 0.00 0.00 0.00 2.69
2023 3056 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
2024 3057 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
2025 3058 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
2026 3059 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
2027 3060 4.077184 CGTCGTGCTAAGGCCCCA 62.077 66.667 0.00 0.00 37.74 4.96
2028 3061 2.590092 GTCGTGCTAAGGCCCCAT 59.410 61.111 0.00 0.00 37.74 4.00
2029 3062 1.827394 GTCGTGCTAAGGCCCCATA 59.173 57.895 0.00 0.00 37.74 2.74
2030 3063 0.249911 GTCGTGCTAAGGCCCCATAG 60.250 60.000 0.00 0.67 37.74 2.23
2031 3064 1.071471 CGTGCTAAGGCCCCATAGG 59.929 63.158 0.00 0.00 37.74 2.57
2032 3065 1.407656 CGTGCTAAGGCCCCATAGGA 61.408 60.000 0.00 0.00 38.24 2.94
2049 3082 3.730761 ACGGGAAGTCGTCGTCGG 61.731 66.667 1.55 0.00 39.34 4.79
2050 3083 4.471726 CGGGAAGTCGTCGTCGGG 62.472 72.222 1.55 0.00 37.69 5.14
2051 3084 3.058160 GGGAAGTCGTCGTCGGGA 61.058 66.667 1.55 0.00 37.69 5.14
2052 3085 2.413142 GGGAAGTCGTCGTCGGGAT 61.413 63.158 1.55 0.00 37.69 3.85
2053 3086 1.226603 GGAAGTCGTCGTCGGGATG 60.227 63.158 1.55 0.00 37.69 3.51
2054 3087 1.505353 GAAGTCGTCGTCGGGATGT 59.495 57.895 1.55 0.00 37.69 3.06
2055 3088 0.109412 GAAGTCGTCGTCGGGATGTT 60.109 55.000 1.55 0.00 37.69 2.71
2056 3089 0.388134 AAGTCGTCGTCGGGATGTTG 60.388 55.000 1.55 0.00 37.69 3.33
2057 3090 1.210931 GTCGTCGTCGGGATGTTGA 59.789 57.895 1.55 0.00 37.69 3.18
2058 3091 1.069378 GTCGTCGTCGGGATGTTGAC 61.069 60.000 1.55 0.00 37.69 3.18
2064 3097 1.474017 GTCGGGATGTTGACGTATCG 58.526 55.000 0.00 0.00 0.00 2.92
2065 3098 0.382873 TCGGGATGTTGACGTATCGG 59.617 55.000 0.00 0.00 0.00 4.18
2066 3099 0.101759 CGGGATGTTGACGTATCGGT 59.898 55.000 0.00 0.00 0.00 4.69
2067 3100 1.849097 GGGATGTTGACGTATCGGTC 58.151 55.000 0.00 0.00 37.45 4.79
2068 3101 1.474017 GGATGTTGACGTATCGGTCG 58.526 55.000 0.00 0.00 39.83 4.79
2069 3102 1.474017 GATGTTGACGTATCGGTCGG 58.526 55.000 0.00 0.00 39.83 4.79
2070 3103 0.813184 ATGTTGACGTATCGGTCGGT 59.187 50.000 0.00 0.00 39.83 4.69
2071 3104 0.597568 TGTTGACGTATCGGTCGGTT 59.402 50.000 0.00 0.00 39.83 4.44
2072 3105 0.986992 GTTGACGTATCGGTCGGTTG 59.013 55.000 0.00 0.00 39.83 3.77
2073 3106 0.109179 TTGACGTATCGGTCGGTTGG 60.109 55.000 0.00 0.00 39.83 3.77
2074 3107 0.959867 TGACGTATCGGTCGGTTGGA 60.960 55.000 0.00 0.00 39.83 3.53
2075 3108 0.171007 GACGTATCGGTCGGTTGGAA 59.829 55.000 0.00 0.00 0.00 3.53
2076 3109 0.602562 ACGTATCGGTCGGTTGGAAA 59.397 50.000 0.00 0.00 0.00 3.13
2077 3110 5.993405 TGACGTATCGGTCGGTTGGAAAC 62.993 52.174 0.00 0.00 38.68 2.78
2087 3120 2.831597 GTTGGAAACGGTACCCTCG 58.168 57.895 6.25 0.00 36.92 4.63
2088 3121 1.004679 TTGGAAACGGTACCCTCGC 60.005 57.895 6.25 0.00 0.00 5.03
2089 3122 2.507769 GGAAACGGTACCCTCGCG 60.508 66.667 6.25 0.00 0.00 5.87
2090 3123 2.259511 GAAACGGTACCCTCGCGT 59.740 61.111 5.77 0.00 0.00 6.01
2091 3124 1.803117 GAAACGGTACCCTCGCGTC 60.803 63.158 5.77 0.00 0.00 5.19
2092 3125 3.615536 AAACGGTACCCTCGCGTCG 62.616 63.158 5.77 0.00 0.00 5.12
2121 3154 4.883300 CGACTCGAGGGCGTACGC 62.883 72.222 31.54 31.54 42.39 4.42
2122 3155 4.883300 GACTCGAGGGCGTACGCG 62.883 72.222 31.78 19.90 43.06 6.01
2147 3180 4.639171 CGCCGGGCCACAAACAAC 62.639 66.667 14.55 0.00 0.00 3.32
2148 3181 3.223589 GCCGGGCCACAAACAACT 61.224 61.111 8.12 0.00 0.00 3.16
2149 3182 2.791868 GCCGGGCCACAAACAACTT 61.792 57.895 8.12 0.00 0.00 2.66
2150 3183 1.362355 CCGGGCCACAAACAACTTC 59.638 57.895 4.39 0.00 0.00 3.01
2151 3184 1.008995 CGGGCCACAAACAACTTCG 60.009 57.895 4.39 0.00 0.00 3.79
2152 3185 1.440938 CGGGCCACAAACAACTTCGA 61.441 55.000 4.39 0.00 0.00 3.71
2153 3186 0.030235 GGGCCACAAACAACTTCGAC 59.970 55.000 4.39 0.00 0.00 4.20
2154 3187 0.030235 GGCCACAAACAACTTCGACC 59.970 55.000 0.00 0.00 0.00 4.79
2155 3188 0.030235 GCCACAAACAACTTCGACCC 59.970 55.000 0.00 0.00 0.00 4.46
2156 3189 0.306533 CCACAAACAACTTCGACCCG 59.693 55.000 0.00 0.00 0.00 5.28
2157 3190 0.306533 CACAAACAACTTCGACCCGG 59.693 55.000 0.00 0.00 0.00 5.73
2158 3191 1.281656 CAAACAACTTCGACCCGGC 59.718 57.895 0.00 0.00 0.00 6.13
2159 3192 1.147600 AAACAACTTCGACCCGGCT 59.852 52.632 0.00 0.00 0.00 5.52
2160 3193 1.164041 AAACAACTTCGACCCGGCTG 61.164 55.000 0.00 0.00 0.00 4.85
2161 3194 2.742372 CAACTTCGACCCGGCTGG 60.742 66.667 3.88 3.88 41.37 4.85
2162 3195 4.699522 AACTTCGACCCGGCTGGC 62.700 66.667 5.85 0.00 37.83 4.85
2185 3218 3.423154 CCAAGTCCGAGCCGCAAC 61.423 66.667 0.00 0.00 0.00 4.17
2186 3219 3.423154 CAAGTCCGAGCCGCAACC 61.423 66.667 0.00 0.00 0.00 3.77
2187 3220 3.936203 AAGTCCGAGCCGCAACCA 61.936 61.111 0.00 0.00 0.00 3.67
2188 3221 3.469863 AAGTCCGAGCCGCAACCAA 62.470 57.895 0.00 0.00 0.00 3.67
2189 3222 3.423154 GTCCGAGCCGCAACCAAG 61.423 66.667 0.00 0.00 0.00 3.61
2190 3223 4.697756 TCCGAGCCGCAACCAAGG 62.698 66.667 0.00 0.00 0.00 3.61
2191 3224 4.697756 CCGAGCCGCAACCAAGGA 62.698 66.667 0.00 0.00 0.00 3.36
2192 3225 2.668212 CGAGCCGCAACCAAGGAA 60.668 61.111 0.00 0.00 0.00 3.36
2193 3226 2.680913 CGAGCCGCAACCAAGGAAG 61.681 63.158 0.00 0.00 0.00 3.46
2194 3227 2.282462 AGCCGCAACCAAGGAAGG 60.282 61.111 0.00 0.00 0.00 3.46
2195 3228 4.056125 GCCGCAACCAAGGAAGGC 62.056 66.667 0.00 0.00 37.61 4.35
2196 3229 3.737172 CCGCAACCAAGGAAGGCG 61.737 66.667 13.68 13.68 46.61 5.52
2197 3230 3.737172 CGCAACCAAGGAAGGCGG 61.737 66.667 13.10 0.00 43.63 6.13
2198 3231 4.056125 GCAACCAAGGAAGGCGGC 62.056 66.667 0.00 0.00 0.00 6.53
2199 3232 3.737172 CAACCAAGGAAGGCGGCG 61.737 66.667 0.51 0.51 0.00 6.46
2222 3255 3.431725 GCCGTTTCGCCCTTGGAG 61.432 66.667 0.00 0.00 0.00 3.86
2223 3256 2.345991 CCGTTTCGCCCTTGGAGA 59.654 61.111 0.00 0.00 0.00 3.71
2224 3257 1.741770 CCGTTTCGCCCTTGGAGAG 60.742 63.158 0.00 0.00 32.27 3.20
2225 3258 1.741770 CGTTTCGCCCTTGGAGAGG 60.742 63.158 0.00 0.00 45.86 3.69
2234 3267 1.577736 CCTTGGAGAGGGTGTGATCT 58.422 55.000 0.00 0.00 42.26 2.75
2235 3268 1.209019 CCTTGGAGAGGGTGTGATCTG 59.791 57.143 0.00 0.00 42.26 2.90
2236 3269 1.209019 CTTGGAGAGGGTGTGATCTGG 59.791 57.143 0.00 0.00 0.00 3.86
2237 3270 0.618680 TGGAGAGGGTGTGATCTGGG 60.619 60.000 0.00 0.00 0.00 4.45
2238 3271 1.524482 GAGAGGGTGTGATCTGGGC 59.476 63.158 0.00 0.00 0.00 5.36
2239 3272 0.980231 GAGAGGGTGTGATCTGGGCT 60.980 60.000 0.00 0.00 0.00 5.19
2240 3273 0.548682 AGAGGGTGTGATCTGGGCTT 60.549 55.000 0.00 0.00 0.00 4.35
2241 3274 0.329596 GAGGGTGTGATCTGGGCTTT 59.670 55.000 0.00 0.00 0.00 3.51
2242 3275 0.038744 AGGGTGTGATCTGGGCTTTG 59.961 55.000 0.00 0.00 0.00 2.77
2243 3276 0.967380 GGGTGTGATCTGGGCTTTGG 60.967 60.000 0.00 0.00 0.00 3.28
2244 3277 1.598701 GGTGTGATCTGGGCTTTGGC 61.599 60.000 0.00 0.00 37.82 4.52
2254 3287 2.676471 GCTTTGGCCCGTGGTGAT 60.676 61.111 0.00 0.00 0.00 3.06
2255 3288 2.700773 GCTTTGGCCCGTGGTGATC 61.701 63.158 0.00 0.00 0.00 2.92
2256 3289 1.002134 CTTTGGCCCGTGGTGATCT 60.002 57.895 0.00 0.00 0.00 2.75
2257 3290 0.609131 CTTTGGCCCGTGGTGATCTT 60.609 55.000 0.00 0.00 0.00 2.40
2258 3291 0.608035 TTTGGCCCGTGGTGATCTTC 60.608 55.000 0.00 0.00 0.00 2.87
2259 3292 2.124695 GGCCCGTGGTGATCTTCC 60.125 66.667 0.00 0.00 0.00 3.46
2260 3293 2.124695 GCCCGTGGTGATCTTCCC 60.125 66.667 0.00 0.00 0.00 3.97
2261 3294 2.590092 CCCGTGGTGATCTTCCCC 59.410 66.667 0.00 0.00 0.00 4.81
2262 3295 2.186903 CCGTGGTGATCTTCCCCG 59.813 66.667 0.00 0.00 0.00 5.73
2263 3296 2.186903 CGTGGTGATCTTCCCCGG 59.813 66.667 0.00 0.00 0.00 5.73
2264 3297 2.124695 GTGGTGATCTTCCCCGGC 60.125 66.667 0.00 0.00 0.00 6.13
2265 3298 3.781307 TGGTGATCTTCCCCGGCG 61.781 66.667 0.00 0.00 0.00 6.46
2267 3300 4.467084 GTGATCTTCCCCGGCGCA 62.467 66.667 10.83 0.00 0.00 6.09
2268 3301 4.161295 TGATCTTCCCCGGCGCAG 62.161 66.667 10.83 4.65 0.00 5.18
2306 3339 3.554692 CGGCGGCTCGTCAACATC 61.555 66.667 7.61 0.00 0.00 3.06
2307 3340 3.195698 GGCGGCTCGTCAACATCC 61.196 66.667 0.00 0.00 0.00 3.51
2308 3341 3.195698 GCGGCTCGTCAACATCCC 61.196 66.667 0.00 0.00 0.00 3.85
2309 3342 2.579201 CGGCTCGTCAACATCCCT 59.421 61.111 0.00 0.00 0.00 4.20
2310 3343 1.519455 CGGCTCGTCAACATCCCTC 60.519 63.158 0.00 0.00 0.00 4.30
2311 3344 1.153349 GGCTCGTCAACATCCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
2312 3345 1.519455 GCTCGTCAACATCCCTCCG 60.519 63.158 0.00 0.00 0.00 4.63
2313 3346 1.519455 CTCGTCAACATCCCTCCGC 60.519 63.158 0.00 0.00 0.00 5.54
2314 3347 2.511600 CGTCAACATCCCTCCGCC 60.512 66.667 0.00 0.00 0.00 6.13
2315 3348 2.124695 GTCAACATCCCTCCGCCC 60.125 66.667 0.00 0.00 0.00 6.13
2316 3349 2.285368 TCAACATCCCTCCGCCCT 60.285 61.111 0.00 0.00 0.00 5.19
2317 3350 1.002403 TCAACATCCCTCCGCCCTA 59.998 57.895 0.00 0.00 0.00 3.53
2318 3351 1.146263 CAACATCCCTCCGCCCTAC 59.854 63.158 0.00 0.00 0.00 3.18
2319 3352 2.432300 AACATCCCTCCGCCCTACG 61.432 63.158 0.00 0.00 43.15 3.51
2382 3415 4.201122 CCTGGCCCCTGCAGGATC 62.201 72.222 34.91 22.98 37.74 3.36
2383 3416 4.201122 CTGGCCCCTGCAGGATCC 62.201 72.222 34.91 30.09 40.13 3.36
2385 3418 4.201122 GGCCCCTGCAGGATCCAG 62.201 72.222 34.91 16.54 40.13 3.86
2386 3419 3.092511 GCCCCTGCAGGATCCAGA 61.093 66.667 34.91 0.00 38.24 3.86
2387 3420 2.459086 GCCCCTGCAGGATCCAGAT 61.459 63.158 34.91 0.00 38.24 2.90
2388 3421 1.759881 CCCCTGCAGGATCCAGATC 59.240 63.158 34.91 0.00 38.24 2.75
2389 3422 0.767446 CCCCTGCAGGATCCAGATCT 60.767 60.000 34.91 0.00 38.24 2.75
2390 3423 0.397187 CCCTGCAGGATCCAGATCTG 59.603 60.000 34.91 16.24 38.24 2.90
2391 3424 0.397187 CCTGCAGGATCCAGATCTGG 59.603 60.000 32.60 32.60 44.63 3.86
2392 3425 3.594034 CCTGCAGGATCCAGATCTGGC 62.594 61.905 33.39 21.45 43.62 4.85
2399 3432 4.044721 CCAGATCTGGCATCTGCG 57.955 61.111 28.45 2.83 44.73 5.18
2400 3433 1.597302 CCAGATCTGGCATCTGCGG 60.597 63.158 28.45 1.94 44.73 5.69
2401 3434 1.597302 CAGATCTGGCATCTGCGGG 60.597 63.158 15.38 0.00 43.26 6.13
2402 3435 2.976903 GATCTGGCATCTGCGGGC 60.977 66.667 0.00 0.00 43.26 6.13
2407 3440 4.175337 GGCATCTGCGGGCCTGTA 62.175 66.667 14.55 8.05 46.74 2.74
2408 3441 2.590007 GCATCTGCGGGCCTGTAG 60.590 66.667 22.84 22.84 0.00 2.74
2409 3442 2.109799 CATCTGCGGGCCTGTAGG 59.890 66.667 27.24 10.40 38.53 3.18
2410 3443 3.164269 ATCTGCGGGCCTGTAGGG 61.164 66.667 27.24 6.20 35.18 3.53
2439 3472 4.554036 GGGCAGGCCTCGTCCATC 62.554 72.222 17.78 0.00 36.10 3.51
2440 3473 4.899239 GGCAGGCCTCGTCCATCG 62.899 72.222 0.00 0.00 41.41 3.84
2441 3474 4.148825 GCAGGCCTCGTCCATCGT 62.149 66.667 0.00 0.00 40.80 3.73
2442 3475 2.579201 CAGGCCTCGTCCATCGTT 59.421 61.111 0.00 0.00 40.80 3.85
2443 3476 1.811266 CAGGCCTCGTCCATCGTTG 60.811 63.158 0.00 0.00 40.80 4.10
2444 3477 2.511600 GGCCTCGTCCATCGTTGG 60.512 66.667 6.15 6.15 45.15 3.77
2445 3478 2.264794 GCCTCGTCCATCGTTGGT 59.735 61.111 12.19 0.00 44.06 3.67
2446 3479 2.100631 GCCTCGTCCATCGTTGGTG 61.101 63.158 12.19 6.77 44.06 4.17
2447 3480 1.292223 CCTCGTCCATCGTTGGTGT 59.708 57.895 12.19 0.00 44.06 4.16
2448 3481 0.320421 CCTCGTCCATCGTTGGTGTT 60.320 55.000 12.19 0.00 44.06 3.32
2449 3482 0.790207 CTCGTCCATCGTTGGTGTTG 59.210 55.000 12.19 1.92 44.06 3.33
2450 3483 0.601576 TCGTCCATCGTTGGTGTTGG 60.602 55.000 12.19 0.00 44.06 3.77
2451 3484 1.579429 GTCCATCGTTGGTGTTGGC 59.421 57.895 12.19 0.00 44.06 4.52
2452 3485 1.963855 TCCATCGTTGGTGTTGGCG 60.964 57.895 12.19 0.00 44.06 5.69
2453 3486 2.560861 CATCGTTGGTGTTGGCGG 59.439 61.111 0.00 0.00 0.00 6.13
2454 3487 3.361977 ATCGTTGGTGTTGGCGGC 61.362 61.111 0.00 0.00 0.00 6.53
2455 3488 3.842925 ATCGTTGGTGTTGGCGGCT 62.843 57.895 11.43 0.00 0.00 5.52
2456 3489 4.326766 CGTTGGTGTTGGCGGCTG 62.327 66.667 11.43 0.00 0.00 4.85
2457 3490 3.977244 GTTGGTGTTGGCGGCTGG 61.977 66.667 11.43 0.00 0.00 4.85
2490 3523 3.677002 GCTAGTCTAGGCAGCTTGG 57.323 57.895 8.97 0.00 32.46 3.61
2491 3524 0.827368 GCTAGTCTAGGCAGCTTGGT 59.173 55.000 8.97 0.00 32.46 3.67
2492 3525 1.202475 GCTAGTCTAGGCAGCTTGGTC 60.202 57.143 8.97 0.00 32.46 4.02
2493 3526 1.066303 CTAGTCTAGGCAGCTTGGTCG 59.934 57.143 0.00 0.00 0.00 4.79
2494 3527 1.153549 GTCTAGGCAGCTTGGTCGG 60.154 63.158 0.00 0.00 0.00 4.79
2495 3528 2.512515 CTAGGCAGCTTGGTCGGC 60.513 66.667 0.00 0.00 0.00 5.54
2496 3529 4.451150 TAGGCAGCTTGGTCGGCG 62.451 66.667 0.00 0.00 34.52 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.212913 GCGCCAGCGATCCAGAGA 62.213 66.667 17.53 0.00 42.83 3.10
153 429 4.194720 GTCGCGCCATCTCCTCGT 62.195 66.667 0.00 0.00 0.00 4.18
339 656 1.421410 CTGTACATCTTGTCGCCGCC 61.421 60.000 0.00 0.00 0.00 6.13
340 657 1.421410 CCTGTACATCTTGTCGCCGC 61.421 60.000 0.00 0.00 0.00 6.53
342 659 0.108138 AGCCTGTACATCTTGTCGCC 60.108 55.000 0.00 0.00 0.00 5.54
343 660 1.002366 CAGCCTGTACATCTTGTCGC 58.998 55.000 0.00 0.00 0.00 5.19
344 661 1.002366 GCAGCCTGTACATCTTGTCG 58.998 55.000 0.00 0.00 0.00 4.35
345 662 2.275318 GAGCAGCCTGTACATCTTGTC 58.725 52.381 0.00 0.00 0.00 3.18
346 663 1.404717 CGAGCAGCCTGTACATCTTGT 60.405 52.381 0.00 0.00 0.00 3.16
369 686 2.263540 GCCGTCCGCCTTCTACAA 59.736 61.111 0.00 0.00 0.00 2.41
496 832 2.003301 GCTGAGATTCGACCAAACTCC 58.997 52.381 0.00 0.00 0.00 3.85
498 834 1.673033 CGGCTGAGATTCGACCAAACT 60.673 52.381 0.00 0.00 0.00 2.66
505 841 1.404181 CCAAACTCGGCTGAGATTCGA 60.404 52.381 29.29 4.03 45.57 3.71
583 964 2.281208 CCACTCGTTTTCGGCCCA 60.281 61.111 0.00 0.00 44.25 5.36
587 968 0.721718 GCATCTCCACTCGTTTTCGG 59.278 55.000 0.00 0.00 44.25 4.30
611 992 1.878102 CGCACCTAGGAGCAACAAACT 60.878 52.381 27.67 0.00 0.00 2.66
615 996 2.047274 GCGCACCTAGGAGCAACA 60.047 61.111 27.67 0.00 0.00 3.33
689 1071 1.107114 CTCCAGCATCCTACGACTGT 58.893 55.000 0.00 0.00 0.00 3.55
694 1076 3.570125 TGACTATTCTCCAGCATCCTACG 59.430 47.826 0.00 0.00 0.00 3.51
695 1077 5.132897 CTGACTATTCTCCAGCATCCTAC 57.867 47.826 0.00 0.00 0.00 3.18
728 1126 3.507233 TGTTCAATCTTCTTCCCATGTGC 59.493 43.478 0.00 0.00 0.00 4.57
757 1155 5.174395 CGCATTAAGGCTGCTATATCTTCT 58.826 41.667 10.75 0.00 37.48 2.85
758 1156 4.201763 GCGCATTAAGGCTGCTATATCTTC 60.202 45.833 17.33 0.00 37.48 2.87
774 1172 0.901827 TGGACTCTTGGAGCGCATTA 59.098 50.000 11.47 0.00 32.04 1.90
795 1193 1.208052 CTTGGACCGGAGATCACATGT 59.792 52.381 9.46 0.00 0.00 3.21
864 1262 9.273016 GCTGATTTATATAGAGTAGGTGCAAAA 57.727 33.333 0.00 0.00 0.00 2.44
901 1304 3.393089 AACACTGGTGATGAGTGAGAC 57.607 47.619 7.78 0.00 43.04 3.36
945 1348 2.032528 ACTAGCGCTGCTGGCAAA 59.967 55.556 22.90 0.00 40.85 3.68
993 1396 1.448893 GCCGGCGACCATCTTGTTA 60.449 57.895 12.58 0.00 0.00 2.41
1047 1450 0.742281 CCTTCCACATCCGCTCTGTG 60.742 60.000 3.87 3.87 42.88 3.66
1050 1453 1.599047 CACCTTCCACATCCGCTCT 59.401 57.895 0.00 0.00 0.00 4.09
1203 1606 3.842923 CTCATCACGCCCGAGCCT 61.843 66.667 0.00 0.00 34.57 4.58
1258 1661 1.079543 CCAGCACCTCCGTCTTGAG 60.080 63.158 0.00 0.00 0.00 3.02
1539 1942 9.981460 AGATTTATTTTTCTGTCTCATAAGGGT 57.019 29.630 0.00 0.00 0.00 4.34
1625 2064 3.748868 TCTTCTCACGAAGTCGATCAG 57.251 47.619 7.87 0.38 45.47 2.90
1826 2859 8.573885 GCCATGATTGAAGATGAATAGATTTGA 58.426 33.333 0.00 0.00 0.00 2.69
1827 2860 8.357402 TGCCATGATTGAAGATGAATAGATTTG 58.643 33.333 0.00 0.00 0.00 2.32
1828 2861 8.473358 TGCCATGATTGAAGATGAATAGATTT 57.527 30.769 0.00 0.00 0.00 2.17
1829 2862 7.724506 ACTGCCATGATTGAAGATGAATAGATT 59.275 33.333 0.00 0.00 0.00 2.40
1830 2863 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
1831 2864 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
1832 2865 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
1833 2866 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
1834 2867 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
1835 2868 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
1836 2869 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
1837 2870 5.823209 TTGTACTGCCATGATTGAAGATG 57.177 39.130 0.00 0.00 0.00 2.90
1838 2871 6.839124 TTTTGTACTGCCATGATTGAAGAT 57.161 33.333 0.00 0.00 0.00 2.40
1839 2872 6.647334 TTTTTGTACTGCCATGATTGAAGA 57.353 33.333 0.00 0.00 0.00 2.87
1869 2902 9.083080 GCACATGGTTGTAATTTTTATTACCTC 57.917 33.333 0.00 0.00 36.46 3.85
1870 2903 7.757624 CGCACATGGTTGTAATTTTTATTACCT 59.242 33.333 0.00 0.00 36.46 3.08
1871 2904 7.542824 ACGCACATGGTTGTAATTTTTATTACC 59.457 33.333 0.00 0.00 36.46 2.85
1872 2905 8.369588 CACGCACATGGTTGTAATTTTTATTAC 58.630 33.333 0.00 0.00 37.49 1.89
1873 2906 7.542477 CCACGCACATGGTTGTAATTTTTATTA 59.458 33.333 0.00 0.00 34.77 0.98
1874 2907 6.367422 CCACGCACATGGTTGTAATTTTTATT 59.633 34.615 0.00 0.00 34.77 1.40
1875 2908 5.866633 CCACGCACATGGTTGTAATTTTTAT 59.133 36.000 0.00 0.00 34.77 1.40
1876 2909 5.009710 TCCACGCACATGGTTGTAATTTTTA 59.990 36.000 0.00 0.00 40.95 1.52
1877 2910 4.054671 CCACGCACATGGTTGTAATTTTT 58.945 39.130 0.00 0.00 34.77 1.94
1878 2911 3.319405 TCCACGCACATGGTTGTAATTTT 59.681 39.130 0.00 0.00 40.95 1.82
1879 2912 2.887783 TCCACGCACATGGTTGTAATTT 59.112 40.909 0.00 0.00 40.95 1.82
1880 2913 2.227865 GTCCACGCACATGGTTGTAATT 59.772 45.455 0.00 0.00 40.95 1.40
1881 2914 1.810151 GTCCACGCACATGGTTGTAAT 59.190 47.619 0.00 0.00 40.95 1.89
1882 2915 1.231221 GTCCACGCACATGGTTGTAA 58.769 50.000 0.00 0.00 40.95 2.41
1883 2916 0.604243 GGTCCACGCACATGGTTGTA 60.604 55.000 0.00 0.00 40.95 2.41
1884 2917 1.896660 GGTCCACGCACATGGTTGT 60.897 57.895 0.00 0.00 40.95 3.32
1885 2918 1.896183 TGGTCCACGCACATGGTTG 60.896 57.895 0.00 0.00 40.95 3.77
1886 2919 1.896660 GTGGTCCACGCACATGGTT 60.897 57.895 6.18 0.00 40.95 3.67
1887 2920 2.281484 GTGGTCCACGCACATGGT 60.281 61.111 6.18 0.00 40.95 3.55
1888 2921 2.178876 TAGGTGGTCCACGCACATGG 62.179 60.000 15.93 0.00 41.57 3.66
1889 2922 0.740868 CTAGGTGGTCCACGCACATG 60.741 60.000 15.93 0.00 34.83 3.21
1890 2923 1.596934 CTAGGTGGTCCACGCACAT 59.403 57.895 15.93 2.21 34.83 3.21
1891 2924 3.056458 CTAGGTGGTCCACGCACA 58.944 61.111 15.93 0.08 34.83 4.57
1892 2925 2.434359 GCTAGGTGGTCCACGCAC 60.434 66.667 15.93 2.27 34.83 5.34
1893 2926 4.063967 CGCTAGGTGGTCCACGCA 62.064 66.667 15.93 5.04 34.83 5.24
1894 2927 3.755628 TCGCTAGGTGGTCCACGC 61.756 66.667 15.93 12.46 34.83 5.34
1895 2928 2.149803 TTGTCGCTAGGTGGTCCACG 62.150 60.000 15.93 4.19 34.83 4.94
1896 2929 0.669625 GTTGTCGCTAGGTGGTCCAC 60.670 60.000 14.13 14.13 35.89 4.02
1897 2930 0.830444 AGTTGTCGCTAGGTGGTCCA 60.830 55.000 0.00 0.00 35.89 4.02
1898 2931 1.135170 GTAGTTGTCGCTAGGTGGTCC 60.135 57.143 0.00 0.00 0.00 4.46
1899 2932 1.542915 TGTAGTTGTCGCTAGGTGGTC 59.457 52.381 0.00 0.00 0.00 4.02
1900 2933 1.624336 TGTAGTTGTCGCTAGGTGGT 58.376 50.000 0.00 0.00 0.00 4.16
1901 2934 2.029290 ACTTGTAGTTGTCGCTAGGTGG 60.029 50.000 0.00 0.00 0.00 4.61
1902 2935 3.299340 ACTTGTAGTTGTCGCTAGGTG 57.701 47.619 0.00 0.00 0.00 4.00
1903 2936 4.077822 AGTACTTGTAGTTGTCGCTAGGT 58.922 43.478 0.00 0.00 0.00 3.08
1904 2937 4.413087 CAGTACTTGTAGTTGTCGCTAGG 58.587 47.826 0.00 0.00 0.00 3.02
1905 2938 4.155462 TCCAGTACTTGTAGTTGTCGCTAG 59.845 45.833 0.00 0.00 0.00 3.42
1906 2939 4.074259 TCCAGTACTTGTAGTTGTCGCTA 58.926 43.478 0.00 0.00 0.00 4.26
1907 2940 2.889045 TCCAGTACTTGTAGTTGTCGCT 59.111 45.455 0.00 0.00 0.00 4.93
1908 2941 3.243336 CTCCAGTACTTGTAGTTGTCGC 58.757 50.000 0.00 0.00 0.00 5.19
1909 2942 3.243336 GCTCCAGTACTTGTAGTTGTCG 58.757 50.000 0.00 0.00 0.00 4.35
1910 2943 3.057736 TCGCTCCAGTACTTGTAGTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
1911 2944 2.889045 TCGCTCCAGTACTTGTAGTTGT 59.111 45.455 0.00 0.00 0.00 3.32
1912 2945 3.502920 CTCGCTCCAGTACTTGTAGTTG 58.497 50.000 0.00 0.00 0.00 3.16
1913 2946 2.094649 GCTCGCTCCAGTACTTGTAGTT 60.095 50.000 0.00 0.00 0.00 2.24
1914 2947 1.473278 GCTCGCTCCAGTACTTGTAGT 59.527 52.381 0.00 0.00 0.00 2.73
1915 2948 1.202313 GGCTCGCTCCAGTACTTGTAG 60.202 57.143 0.00 0.00 0.00 2.74
1916 2949 0.815734 GGCTCGCTCCAGTACTTGTA 59.184 55.000 0.00 0.00 0.00 2.41
1917 2950 1.185618 TGGCTCGCTCCAGTACTTGT 61.186 55.000 0.00 0.00 0.00 3.16
1918 2951 0.037326 TTGGCTCGCTCCAGTACTTG 60.037 55.000 0.00 0.00 37.44 3.16
1919 2952 0.685097 TTTGGCTCGCTCCAGTACTT 59.315 50.000 0.00 0.00 37.44 2.24
1920 2953 0.247736 CTTTGGCTCGCTCCAGTACT 59.752 55.000 0.00 0.00 37.44 2.73
1921 2954 0.741221 CCTTTGGCTCGCTCCAGTAC 60.741 60.000 0.00 0.00 37.44 2.73
1922 2955 1.596934 CCTTTGGCTCGCTCCAGTA 59.403 57.895 0.00 0.00 37.44 2.74
1923 2956 2.348998 CCTTTGGCTCGCTCCAGT 59.651 61.111 0.00 0.00 37.44 4.00
1924 2957 3.130160 GCCTTTGGCTCGCTCCAG 61.130 66.667 0.73 0.00 46.69 3.86
1945 2978 4.530857 GAGGGGCGATGACGGTGG 62.531 72.222 0.00 0.00 40.15 4.61
1946 2979 4.530857 GGAGGGGCGATGACGGTG 62.531 72.222 0.00 0.00 40.15 4.94
1949 2982 3.917760 GAGGGAGGGGCGATGACG 61.918 72.222 0.00 0.00 42.93 4.35
1950 2983 2.764128 TGAGGGAGGGGCGATGAC 60.764 66.667 0.00 0.00 0.00 3.06
1951 2984 2.764128 GTGAGGGAGGGGCGATGA 60.764 66.667 0.00 0.00 0.00 2.92
1952 2985 2.765807 AGTGAGGGAGGGGCGATG 60.766 66.667 0.00 0.00 0.00 3.84
1953 2986 2.765807 CAGTGAGGGAGGGGCGAT 60.766 66.667 0.00 0.00 0.00 4.58
1961 2994 2.284921 CCTGGCTCCAGTGAGGGA 60.285 66.667 14.27 0.00 42.15 4.20
1962 2995 4.106925 GCCTGGCTCCAGTGAGGG 62.107 72.222 12.43 1.40 42.15 4.30
1963 2996 2.416107 TTTGCCTGGCTCCAGTGAGG 62.416 60.000 21.03 1.75 42.15 3.86
1964 2997 1.073722 TTTGCCTGGCTCCAGTGAG 59.926 57.895 21.03 1.33 42.15 3.51
1965 2998 1.228245 GTTTGCCTGGCTCCAGTGA 60.228 57.895 21.03 0.00 42.15 3.41
1966 2999 2.270986 GGTTTGCCTGGCTCCAGTG 61.271 63.158 21.03 7.43 42.15 3.66
1967 3000 2.011617 AAGGTTTGCCTGGCTCCAGT 62.012 55.000 21.03 8.88 46.33 4.00
1968 3001 1.228675 AAGGTTTGCCTGGCTCCAG 60.229 57.895 21.03 8.93 46.33 3.86
1969 3002 1.228552 GAAGGTTTGCCTGGCTCCA 60.229 57.895 21.03 0.54 46.33 3.86
1970 3003 0.540597 AAGAAGGTTTGCCTGGCTCC 60.541 55.000 21.03 18.13 46.33 4.70
1971 3004 0.600057 CAAGAAGGTTTGCCTGGCTC 59.400 55.000 21.03 7.76 46.33 4.70
1972 3005 0.106015 ACAAGAAGGTTTGCCTGGCT 60.106 50.000 21.03 0.00 46.33 4.75
1973 3006 1.541588 CTACAAGAAGGTTTGCCTGGC 59.458 52.381 12.87 12.87 46.33 4.85
1974 3007 2.863809 ACTACAAGAAGGTTTGCCTGG 58.136 47.619 0.00 0.00 46.33 4.45
1975 3008 4.691216 GTCTACTACAAGAAGGTTTGCCTG 59.309 45.833 0.00 0.00 46.33 4.85
1976 3009 4.347000 TGTCTACTACAAGAAGGTTTGCCT 59.653 41.667 0.00 0.00 40.46 4.75
1977 3010 4.638304 TGTCTACTACAAGAAGGTTTGCC 58.362 43.478 0.00 0.00 34.29 4.52
1978 3011 5.298347 ACTGTCTACTACAAGAAGGTTTGC 58.702 41.667 0.00 0.00 37.74 3.68
1979 3012 5.629849 CGACTGTCTACTACAAGAAGGTTTG 59.370 44.000 6.21 0.00 37.74 2.93
1980 3013 5.278858 CCGACTGTCTACTACAAGAAGGTTT 60.279 44.000 6.21 0.00 37.74 3.27
1981 3014 4.217983 CCGACTGTCTACTACAAGAAGGTT 59.782 45.833 6.21 0.00 37.74 3.50
1982 3015 3.757493 CCGACTGTCTACTACAAGAAGGT 59.243 47.826 6.21 0.00 37.74 3.50
1983 3016 3.128938 CCCGACTGTCTACTACAAGAAGG 59.871 52.174 6.21 0.00 37.74 3.46
1984 3017 4.008330 TCCCGACTGTCTACTACAAGAAG 58.992 47.826 6.21 0.00 37.74 2.85
1985 3018 4.025040 TCCCGACTGTCTACTACAAGAA 57.975 45.455 6.21 0.00 37.74 2.52
1986 3019 3.708403 TCCCGACTGTCTACTACAAGA 57.292 47.619 6.21 0.00 37.74 3.02
1987 3020 3.757493 ACTTCCCGACTGTCTACTACAAG 59.243 47.826 6.21 2.59 37.74 3.16
1988 3021 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
1989 3022 3.341823 GACTTCCCGACTGTCTACTACA 58.658 50.000 6.21 0.00 36.42 2.74
1990 3023 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
1991 3024 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
1992 3025 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
1993 3026 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
1994 3027 1.446907 GACGACTTCCCGACTGTCTA 58.553 55.000 6.21 0.00 0.00 2.59
1995 3028 1.575576 CGACGACTTCCCGACTGTCT 61.576 60.000 6.21 0.00 0.00 3.41
1996 3029 1.154263 CGACGACTTCCCGACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
1997 3030 1.895707 ACGACGACTTCCCGACTGT 60.896 57.895 0.00 0.00 0.00 3.55
1998 3031 1.442184 CACGACGACTTCCCGACTG 60.442 63.158 0.00 0.00 0.00 3.51
1999 3032 2.952245 CACGACGACTTCCCGACT 59.048 61.111 0.00 0.00 0.00 4.18
2000 3033 1.915614 TAGCACGACGACTTCCCGAC 61.916 60.000 0.00 0.00 0.00 4.79
2001 3034 1.236616 TTAGCACGACGACTTCCCGA 61.237 55.000 0.00 0.00 0.00 5.14
2002 3035 0.797249 CTTAGCACGACGACTTCCCG 60.797 60.000 0.00 0.00 0.00 5.14
2003 3036 0.458025 CCTTAGCACGACGACTTCCC 60.458 60.000 0.00 0.00 0.00 3.97
2004 3037 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
2005 3038 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
2006 3039 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
2007 3040 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
2008 3041 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
2009 3042 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
2010 3043 2.023414 TATGGGGCCTTAGCACGACG 62.023 60.000 0.84 0.00 46.55 5.12
2011 3044 0.249911 CTATGGGGCCTTAGCACGAC 60.250 60.000 0.84 0.00 46.55 4.34
2012 3045 1.407656 CCTATGGGGCCTTAGCACGA 61.408 60.000 0.84 0.00 46.55 4.35
2013 3046 1.071471 CCTATGGGGCCTTAGCACG 59.929 63.158 0.84 0.00 46.55 5.34
2014 3047 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.000 0.84 0.00 43.97 4.40
2015 3048 1.407656 CGTCCTATGGGGCCTTAGCA 61.408 60.000 0.84 0.00 42.56 3.49
2016 3049 1.371558 CGTCCTATGGGGCCTTAGC 59.628 63.158 0.84 0.00 32.63 3.09
2017 3050 1.481056 CCCGTCCTATGGGGCCTTAG 61.481 65.000 0.84 5.28 40.90 2.18
2018 3051 1.460689 CCCGTCCTATGGGGCCTTA 60.461 63.158 0.84 0.00 40.90 2.69
2019 3052 2.772622 CCCGTCCTATGGGGCCTT 60.773 66.667 0.84 0.00 40.90 4.35
2020 3053 3.341469 TTCCCGTCCTATGGGGCCT 62.341 63.158 0.84 0.00 44.84 5.19
2021 3054 2.770904 TTCCCGTCCTATGGGGCC 60.771 66.667 0.00 0.00 44.84 5.80
2022 3055 2.041206 GACTTCCCGTCCTATGGGGC 62.041 65.000 4.37 0.00 44.84 5.80
2023 3056 1.745320 CGACTTCCCGTCCTATGGGG 61.745 65.000 4.37 0.00 44.84 4.96
2024 3057 1.041447 ACGACTTCCCGTCCTATGGG 61.041 60.000 0.00 0.00 46.17 4.00
2025 3058 2.501492 ACGACTTCCCGTCCTATGG 58.499 57.895 0.00 0.00 38.56 2.74
2032 3065 3.730761 CCGACGACGACTTCCCGT 61.731 66.667 9.28 0.00 46.43 5.28
2033 3066 4.471726 CCCGACGACGACTTCCCG 62.472 72.222 9.28 0.00 42.66 5.14
2034 3067 2.413142 ATCCCGACGACGACTTCCC 61.413 63.158 9.28 0.00 42.66 3.97
2035 3068 1.226603 CATCCCGACGACGACTTCC 60.227 63.158 9.28 0.00 42.66 3.46
2036 3069 0.109412 AACATCCCGACGACGACTTC 60.109 55.000 9.28 0.00 42.66 3.01
2037 3070 0.388134 CAACATCCCGACGACGACTT 60.388 55.000 9.28 0.00 42.66 3.01
2038 3071 1.211969 CAACATCCCGACGACGACT 59.788 57.895 9.28 0.00 42.66 4.18
2039 3072 1.069378 GTCAACATCCCGACGACGAC 61.069 60.000 9.28 0.00 42.66 4.34
2040 3073 1.210931 GTCAACATCCCGACGACGA 59.789 57.895 9.28 0.00 42.66 4.20
2041 3074 3.763319 GTCAACATCCCGACGACG 58.237 61.111 0.00 0.00 39.43 5.12
2045 3078 1.474017 CGATACGTCAACATCCCGAC 58.526 55.000 0.00 0.00 0.00 4.79
2046 3079 0.382873 CCGATACGTCAACATCCCGA 59.617 55.000 0.00 0.00 0.00 5.14
2047 3080 0.101759 ACCGATACGTCAACATCCCG 59.898 55.000 0.00 0.00 0.00 5.14
2048 3081 1.849097 GACCGATACGTCAACATCCC 58.151 55.000 0.00 0.00 32.74 3.85
2049 3082 1.474017 CGACCGATACGTCAACATCC 58.526 55.000 0.00 0.00 32.74 3.51
2050 3083 1.202222 ACCGACCGATACGTCAACATC 60.202 52.381 0.00 0.00 32.74 3.06
2051 3084 0.813184 ACCGACCGATACGTCAACAT 59.187 50.000 0.00 0.00 32.74 2.71
2052 3085 0.597568 AACCGACCGATACGTCAACA 59.402 50.000 0.00 0.00 32.74 3.33
2053 3086 0.986992 CAACCGACCGATACGTCAAC 59.013 55.000 0.00 0.00 32.74 3.18
2054 3087 0.109179 CCAACCGACCGATACGTCAA 60.109 55.000 0.00 0.00 32.74 3.18
2055 3088 0.959867 TCCAACCGACCGATACGTCA 60.960 55.000 0.00 0.00 32.74 4.35
2056 3089 0.171007 TTCCAACCGACCGATACGTC 59.829 55.000 0.00 0.00 0.00 4.34
2057 3090 0.602562 TTTCCAACCGACCGATACGT 59.397 50.000 0.00 0.00 0.00 3.57
2058 3091 0.994263 GTTTCCAACCGACCGATACG 59.006 55.000 0.00 0.00 0.00 3.06
2059 3092 0.994263 CGTTTCCAACCGACCGATAC 59.006 55.000 0.00 0.00 0.00 2.24
2060 3093 0.108709 CCGTTTCCAACCGACCGATA 60.109 55.000 0.00 0.00 0.00 2.92
2061 3094 1.375013 CCGTTTCCAACCGACCGAT 60.375 57.895 0.00 0.00 0.00 4.18
2062 3095 1.459455 TACCGTTTCCAACCGACCGA 61.459 55.000 0.00 0.00 0.00 4.69
2063 3096 1.006337 TACCGTTTCCAACCGACCG 60.006 57.895 0.00 0.00 0.00 4.79
2064 3097 0.950555 GGTACCGTTTCCAACCGACC 60.951 60.000 0.00 0.00 0.00 4.79
2065 3098 0.950555 GGGTACCGTTTCCAACCGAC 60.951 60.000 5.65 0.00 40.86 4.79
2066 3099 1.370810 GGGTACCGTTTCCAACCGA 59.629 57.895 5.65 0.00 40.86 4.69
2067 3100 3.970721 GGGTACCGTTTCCAACCG 58.029 61.111 5.65 0.00 40.86 4.44
2102 3135 4.549516 GTACGCCCTCGAGTCGCC 62.550 72.222 19.80 10.19 39.41 5.54
2103 3136 4.883300 CGTACGCCCTCGAGTCGC 62.883 72.222 19.80 15.57 39.41 5.19
2104 3137 4.883300 GCGTACGCCCTCGAGTCG 62.883 72.222 29.51 18.72 39.41 4.18
2105 3138 4.883300 CGCGTACGCCCTCGAGTC 62.883 72.222 32.64 4.17 39.41 3.36
2107 3140 4.592936 CTCGCGTACGCCCTCGAG 62.593 72.222 32.64 26.89 41.66 4.04
2130 3163 4.639171 GTTGTTTGTGGCCCGGCG 62.639 66.667 0.00 0.00 0.00 6.46
2131 3164 2.693250 GAAGTTGTTTGTGGCCCGGC 62.693 60.000 0.00 0.00 0.00 6.13
2132 3165 1.362355 GAAGTTGTTTGTGGCCCGG 59.638 57.895 0.00 0.00 0.00 5.73
2133 3166 1.008995 CGAAGTTGTTTGTGGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
2134 3167 0.030235 GTCGAAGTTGTTTGTGGCCC 59.970 55.000 0.00 0.00 0.00 5.80
2135 3168 0.030235 GGTCGAAGTTGTTTGTGGCC 59.970 55.000 0.00 0.00 0.00 5.36
2136 3169 0.030235 GGGTCGAAGTTGTTTGTGGC 59.970 55.000 0.00 0.00 0.00 5.01
2137 3170 0.306533 CGGGTCGAAGTTGTTTGTGG 59.693 55.000 0.00 0.00 0.00 4.17
2138 3171 0.306533 CCGGGTCGAAGTTGTTTGTG 59.693 55.000 0.00 0.00 0.00 3.33
2139 3172 1.441732 GCCGGGTCGAAGTTGTTTGT 61.442 55.000 2.18 0.00 0.00 2.83
2140 3173 1.164041 AGCCGGGTCGAAGTTGTTTG 61.164 55.000 0.00 0.00 0.00 2.93
2141 3174 1.147600 AGCCGGGTCGAAGTTGTTT 59.852 52.632 0.00 0.00 0.00 2.83
2142 3175 1.597027 CAGCCGGGTCGAAGTTGTT 60.597 57.895 1.27 0.00 0.00 2.83
2143 3176 2.030562 CAGCCGGGTCGAAGTTGT 59.969 61.111 1.27 0.00 0.00 3.32
2144 3177 2.742372 CCAGCCGGGTCGAAGTTG 60.742 66.667 1.27 0.00 0.00 3.16
2145 3178 4.699522 GCCAGCCGGGTCGAAGTT 62.700 66.667 1.27 0.00 39.65 2.66
2168 3201 3.423154 GTTGCGGCTCGGACTTGG 61.423 66.667 0.00 0.00 0.00 3.61
2169 3202 3.423154 GGTTGCGGCTCGGACTTG 61.423 66.667 0.00 0.00 0.00 3.16
2170 3203 3.469863 TTGGTTGCGGCTCGGACTT 62.470 57.895 0.00 0.00 0.00 3.01
2171 3204 3.883744 CTTGGTTGCGGCTCGGACT 62.884 63.158 0.00 0.00 0.00 3.85
2172 3205 3.423154 CTTGGTTGCGGCTCGGAC 61.423 66.667 0.00 0.00 0.00 4.79
2173 3206 4.697756 CCTTGGTTGCGGCTCGGA 62.698 66.667 0.00 0.00 0.00 4.55
2174 3207 4.697756 TCCTTGGTTGCGGCTCGG 62.698 66.667 0.00 0.00 0.00 4.63
2175 3208 2.668212 TTCCTTGGTTGCGGCTCG 60.668 61.111 0.00 0.00 0.00 5.03
2176 3209 2.335712 CCTTCCTTGGTTGCGGCTC 61.336 63.158 0.00 0.00 0.00 4.70
2177 3210 2.282462 CCTTCCTTGGTTGCGGCT 60.282 61.111 0.00 0.00 0.00 5.52
2178 3211 4.056125 GCCTTCCTTGGTTGCGGC 62.056 66.667 0.00 0.00 0.00 6.53
2179 3212 3.737172 CGCCTTCCTTGGTTGCGG 61.737 66.667 10.52 0.00 41.42 5.69
2180 3213 3.737172 CCGCCTTCCTTGGTTGCG 61.737 66.667 11.11 11.11 44.47 4.85
2181 3214 4.056125 GCCGCCTTCCTTGGTTGC 62.056 66.667 0.00 0.00 0.00 4.17
2182 3215 3.737172 CGCCGCCTTCCTTGGTTG 61.737 66.667 0.00 0.00 0.00 3.77
2206 3239 1.741770 CTCTCCAAGGGCGAAACGG 60.742 63.158 0.00 0.00 0.00 4.44
2207 3240 1.741770 CCTCTCCAAGGGCGAAACG 60.742 63.158 0.00 0.00 42.03 3.60
2208 3241 4.303257 CCTCTCCAAGGGCGAAAC 57.697 61.111 0.00 0.00 42.03 2.78
2215 3248 1.209019 CAGATCACACCCTCTCCAAGG 59.791 57.143 0.00 0.00 45.77 3.61
2216 3249 1.209019 CCAGATCACACCCTCTCCAAG 59.791 57.143 0.00 0.00 0.00 3.61
2217 3250 1.279496 CCAGATCACACCCTCTCCAA 58.721 55.000 0.00 0.00 0.00 3.53
2218 3251 0.618680 CCCAGATCACACCCTCTCCA 60.619 60.000 0.00 0.00 0.00 3.86
2219 3252 1.977293 GCCCAGATCACACCCTCTCC 61.977 65.000 0.00 0.00 0.00 3.71
2220 3253 0.980231 AGCCCAGATCACACCCTCTC 60.980 60.000 0.00 0.00 0.00 3.20
2221 3254 0.548682 AAGCCCAGATCACACCCTCT 60.549 55.000 0.00 0.00 0.00 3.69
2222 3255 0.329596 AAAGCCCAGATCACACCCTC 59.670 55.000 0.00 0.00 0.00 4.30
2223 3256 0.038744 CAAAGCCCAGATCACACCCT 59.961 55.000 0.00 0.00 0.00 4.34
2224 3257 0.967380 CCAAAGCCCAGATCACACCC 60.967 60.000 0.00 0.00 0.00 4.61
2225 3258 1.598701 GCCAAAGCCCAGATCACACC 61.599 60.000 0.00 0.00 0.00 4.16
2226 3259 1.885871 GCCAAAGCCCAGATCACAC 59.114 57.895 0.00 0.00 0.00 3.82
2227 3260 4.421365 GCCAAAGCCCAGATCACA 57.579 55.556 0.00 0.00 0.00 3.58
2237 3270 2.676471 ATCACCACGGGCCAAAGC 60.676 61.111 4.39 0.00 38.76 3.51
2238 3271 0.609131 AAGATCACCACGGGCCAAAG 60.609 55.000 4.39 0.00 0.00 2.77
2239 3272 0.608035 GAAGATCACCACGGGCCAAA 60.608 55.000 4.39 0.00 0.00 3.28
2240 3273 1.002624 GAAGATCACCACGGGCCAA 60.003 57.895 4.39 0.00 0.00 4.52
2241 3274 2.668632 GAAGATCACCACGGGCCA 59.331 61.111 4.39 0.00 0.00 5.36
2242 3275 2.124695 GGAAGATCACCACGGGCC 60.125 66.667 0.00 0.00 0.00 5.80
2243 3276 2.124695 GGGAAGATCACCACGGGC 60.125 66.667 10.36 0.00 0.00 6.13
2244 3277 2.590092 GGGGAAGATCACCACGGG 59.410 66.667 10.36 0.00 40.54 5.28
2247 3280 2.124695 GCCGGGGAAGATCACCAC 60.125 66.667 2.18 6.28 41.00 4.16
2248 3281 3.781307 CGCCGGGGAAGATCACCA 61.781 66.667 14.46 0.00 41.00 4.17
2250 3283 4.467084 TGCGCCGGGGAAGATCAC 62.467 66.667 24.68 2.60 0.00 3.06
2251 3284 4.161295 CTGCGCCGGGGAAGATCA 62.161 66.667 22.10 8.13 0.00 2.92
2289 3322 3.554692 GATGTTGACGAGCCGCCG 61.555 66.667 0.00 0.44 0.00 6.46
2290 3323 3.195698 GGATGTTGACGAGCCGCC 61.196 66.667 0.00 0.00 0.00 6.13
2291 3324 3.195698 GGGATGTTGACGAGCCGC 61.196 66.667 0.00 0.00 0.00 6.53
2292 3325 1.519455 GAGGGATGTTGACGAGCCG 60.519 63.158 0.00 0.00 0.00 5.52
2293 3326 1.153349 GGAGGGATGTTGACGAGCC 60.153 63.158 0.00 0.00 0.00 4.70
2294 3327 1.519455 CGGAGGGATGTTGACGAGC 60.519 63.158 0.00 0.00 0.00 5.03
2295 3328 1.519455 GCGGAGGGATGTTGACGAG 60.519 63.158 0.00 0.00 0.00 4.18
2296 3329 2.577059 GCGGAGGGATGTTGACGA 59.423 61.111 0.00 0.00 0.00 4.20
2297 3330 2.511600 GGCGGAGGGATGTTGACG 60.512 66.667 0.00 0.00 0.00 4.35
2298 3331 1.335132 TAGGGCGGAGGGATGTTGAC 61.335 60.000 0.00 0.00 0.00 3.18
2299 3332 1.002403 TAGGGCGGAGGGATGTTGA 59.998 57.895 0.00 0.00 0.00 3.18
2300 3333 1.146263 GTAGGGCGGAGGGATGTTG 59.854 63.158 0.00 0.00 0.00 3.33
2301 3334 2.432300 CGTAGGGCGGAGGGATGTT 61.432 63.158 0.00 0.00 36.85 2.71
2302 3335 2.838225 CGTAGGGCGGAGGGATGT 60.838 66.667 0.00 0.00 36.85 3.06
2365 3398 4.201122 GATCCTGCAGGGGCCAGG 62.201 72.222 32.23 6.20 40.13 4.45
2366 3399 4.201122 GGATCCTGCAGGGGCCAG 62.201 72.222 32.23 5.95 40.13 4.85
2368 3401 4.201122 CTGGATCCTGCAGGGGCC 62.201 72.222 32.23 29.72 40.13 5.80
2369 3402 2.408880 GATCTGGATCCTGCAGGGGC 62.409 65.000 32.23 22.72 36.40 5.80
2370 3403 0.767446 AGATCTGGATCCTGCAGGGG 60.767 60.000 32.23 16.55 36.40 4.79
2371 3404 0.397187 CAGATCTGGATCCTGCAGGG 59.603 60.000 32.23 16.01 36.40 4.45
2383 3416 1.597302 CCCGCAGATGCCAGATCTG 60.597 63.158 16.24 16.24 46.12 2.90
2384 3417 2.827423 CCCGCAGATGCCAGATCT 59.173 61.111 0.00 0.00 37.91 2.75
2385 3418 2.976903 GCCCGCAGATGCCAGATC 60.977 66.667 0.00 0.00 37.91 2.75
2386 3419 4.575973 GGCCCGCAGATGCCAGAT 62.576 66.667 0.00 0.00 43.22 2.90
2390 3423 4.175337 TACAGGCCCGCAGATGCC 62.175 66.667 0.00 0.00 43.89 4.40
2391 3424 2.590007 CTACAGGCCCGCAGATGC 60.590 66.667 0.00 0.00 37.78 3.91
2392 3425 2.109799 CCTACAGGCCCGCAGATG 59.890 66.667 0.00 0.00 0.00 2.90
2393 3426 3.164269 CCCTACAGGCCCGCAGAT 61.164 66.667 0.00 0.00 0.00 2.90
2422 3455 4.554036 GATGGACGAGGCCTGCCC 62.554 72.222 12.00 9.07 36.58 5.36
2423 3456 4.899239 CGATGGACGAGGCCTGCC 62.899 72.222 12.00 9.79 45.77 4.85
2424 3457 3.665675 AACGATGGACGAGGCCTGC 62.666 63.158 12.00 0.00 45.77 4.85
2425 3458 1.811266 CAACGATGGACGAGGCCTG 60.811 63.158 12.00 5.11 45.77 4.85
2426 3459 2.579201 CAACGATGGACGAGGCCT 59.421 61.111 3.86 3.86 45.77 5.19
2436 3469 2.560861 CCGCCAACACCAACGATG 59.439 61.111 0.00 0.00 0.00 3.84
2437 3470 3.361977 GCCGCCAACACCAACGAT 61.362 61.111 0.00 0.00 0.00 3.73
2438 3471 4.555709 AGCCGCCAACACCAACGA 62.556 61.111 0.00 0.00 0.00 3.85
2439 3472 4.326766 CAGCCGCCAACACCAACG 62.327 66.667 0.00 0.00 0.00 4.10
2440 3473 3.977244 CCAGCCGCCAACACCAAC 61.977 66.667 0.00 0.00 0.00 3.77
2458 3491 4.143333 TAGCCTCTCGCCGCAACC 62.143 66.667 0.00 0.00 38.78 3.77
2459 3492 2.583593 CTAGCCTCTCGCCGCAAC 60.584 66.667 0.00 0.00 38.78 4.17
2460 3493 3.064987 GACTAGCCTCTCGCCGCAA 62.065 63.158 0.00 0.00 38.78 4.85
2461 3494 2.604299 TAGACTAGCCTCTCGCCGCA 62.604 60.000 0.00 0.00 38.78 5.69
2462 3495 1.847890 CTAGACTAGCCTCTCGCCGC 61.848 65.000 0.00 0.00 38.78 6.53
2463 3496 1.231958 CCTAGACTAGCCTCTCGCCG 61.232 65.000 3.76 0.00 38.78 6.46
2464 3497 1.520600 GCCTAGACTAGCCTCTCGCC 61.521 65.000 3.76 0.00 38.78 5.54
2465 3498 0.820074 TGCCTAGACTAGCCTCTCGC 60.820 60.000 3.76 1.99 37.98 5.03
2466 3499 1.234821 CTGCCTAGACTAGCCTCTCG 58.765 60.000 3.76 0.00 0.00 4.04
2467 3500 0.958822 GCTGCCTAGACTAGCCTCTC 59.041 60.000 3.76 0.00 0.00 3.20
2468 3501 0.555769 AGCTGCCTAGACTAGCCTCT 59.444 55.000 3.76 0.00 38.18 3.69
2469 3502 1.068434 CAAGCTGCCTAGACTAGCCTC 59.932 57.143 3.76 0.00 38.18 4.70
2470 3503 1.118838 CAAGCTGCCTAGACTAGCCT 58.881 55.000 3.76 0.00 38.18 4.58
2471 3504 0.105778 CCAAGCTGCCTAGACTAGCC 59.894 60.000 3.76 0.00 38.18 3.93
2472 3505 0.827368 ACCAAGCTGCCTAGACTAGC 59.173 55.000 3.76 0.00 37.71 3.42
2473 3506 1.066303 CGACCAAGCTGCCTAGACTAG 59.934 57.143 2.18 2.18 0.00 2.57
2474 3507 1.103803 CGACCAAGCTGCCTAGACTA 58.896 55.000 0.00 0.00 0.00 2.59
2475 3508 1.608717 CCGACCAAGCTGCCTAGACT 61.609 60.000 0.00 0.00 0.00 3.24
2476 3509 1.153549 CCGACCAAGCTGCCTAGAC 60.154 63.158 0.00 0.00 0.00 2.59
2477 3510 3.019003 GCCGACCAAGCTGCCTAGA 62.019 63.158 0.00 0.00 0.00 2.43
2478 3511 2.512515 GCCGACCAAGCTGCCTAG 60.513 66.667 0.00 0.00 0.00 3.02
2479 3512 4.451150 CGCCGACCAAGCTGCCTA 62.451 66.667 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.