Multiple sequence alignment - TraesCS5D01G102200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G102200 chr5D 100.000 7897 0 0 1 7897 115398028 115405924 0.000000e+00 14584.0
1 TraesCS5D01G102200 chr5D 92.032 251 13 6 1 246 555197689 555197441 5.870000e-91 346.0
2 TraesCS5D01G102200 chr5D 92.766 235 15 2 1 235 301209258 301209490 9.820000e-89 339.0
3 TraesCS5D01G102200 chr5D 87.200 250 27 3 7526 7773 557274090 557273844 6.030000e-71 279.0
4 TraesCS5D01G102200 chr5D 100.000 28 0 0 7420 7447 45654428 45654401 1.400000e-02 52.8
5 TraesCS5D01G102200 chr5A 97.373 4759 91 19 305 5059 121408638 121413366 0.000000e+00 8065.0
6 TraesCS5D01G102200 chr5A 89.975 1177 69 27 6291 7427 121414252 121415419 0.000000e+00 1474.0
7 TraesCS5D01G102200 chr5A 97.115 832 24 0 5247 6078 121413425 121414256 0.000000e+00 1404.0
8 TraesCS5D01G102200 chr5A 84.116 277 35 8 7525 7797 513643429 513643700 7.860000e-65 259.0
9 TraesCS5D01G102200 chr5A 100.000 28 0 0 7421 7448 704945555 704945582 1.400000e-02 52.8
10 TraesCS5D01G102200 chr5B 96.333 4172 102 22 305 4456 126595339 126599479 0.000000e+00 6809.0
11 TraesCS5D01G102200 chr5B 95.285 1633 49 11 4444 6075 126601321 126602926 0.000000e+00 2564.0
12 TraesCS5D01G102200 chr5B 95.160 1529 47 13 6291 7800 126602925 126604445 0.000000e+00 2388.0
13 TraesCS5D01G102200 chr5B 97.321 224 6 0 6070 6293 146825605 146825828 1.610000e-101 381.0
14 TraesCS5D01G102200 chr3D 89.869 306 29 2 3443 3748 46556037 46555734 7.430000e-105 392.0
15 TraesCS5D01G102200 chr3D 92.829 251 11 7 1 246 416255267 416255019 2.710000e-94 357.0
16 TraesCS5D01G102200 chr3D 84.982 273 36 5 7520 7790 364984739 364985008 1.010000e-68 272.0
17 TraesCS5D01G102200 chr3A 89.542 306 27 3 3443 3748 57958551 57958851 4.470000e-102 383.0
18 TraesCS5D01G102200 chr3A 86.397 272 30 5 7520 7786 486924905 486925174 2.790000e-74 291.0
19 TraesCS5D01G102200 chr3A 82.724 301 49 3 3432 3731 11425384 11425682 1.690000e-66 265.0
20 TraesCS5D01G102200 chr3B 96.903 226 7 0 6073 6298 49950068 49949843 5.780000e-101 379.0
21 TraesCS5D01G102200 chr3B 97.260 219 6 0 6077 6295 235884226 235884008 9.680000e-99 372.0
22 TraesCS5D01G102200 chr3B 96.413 223 8 0 6076 6298 795441343 795441121 1.250000e-97 368.0
23 TraesCS5D01G102200 chr3B 94.421 233 11 2 6073 6304 29755649 29755418 2.710000e-94 357.0
24 TraesCS5D01G102200 chr3B 90.837 251 18 5 1 246 682394869 682394619 1.640000e-86 331.0
25 TraesCS5D01G102200 chr1A 96.861 223 6 1 6073 6295 217757518 217757739 9.680000e-99 372.0
26 TraesCS5D01G102200 chr7B 88.103 311 36 1 3442 3752 13823405 13823714 1.250000e-97 368.0
27 TraesCS5D01G102200 chr2A 96.429 224 7 1 6072 6295 777253143 777252921 1.250000e-97 368.0
28 TraesCS5D01G102200 chr2A 85.765 281 25 11 7523 7800 475523138 475522870 4.660000e-72 283.0
29 TraesCS5D01G102200 chr1B 95.575 226 10 0 6073 6298 561755451 561755676 5.820000e-96 363.0
30 TraesCS5D01G102200 chr1B 87.226 274 32 2 3472 3745 348472808 348473078 7.700000e-80 309.0
31 TraesCS5D01G102200 chr4B 97.561 205 5 0 6076 6280 468004980 468005184 1.260000e-92 351.0
32 TraesCS5D01G102200 chr4D 94.690 226 11 1 2 227 8391219 8390995 4.530000e-92 350.0
33 TraesCS5D01G102200 chr4D 84.762 315 44 4 3435 3748 494472565 494472876 5.950000e-81 313.0
34 TraesCS5D01G102200 chr7D 92.032 251 15 5 1 246 446243204 446243454 1.630000e-91 348.0
35 TraesCS5D01G102200 chr7D 92.437 238 16 2 1 236 485221333 485221096 9.820000e-89 339.0
36 TraesCS5D01G102200 chr7D 82.075 318 49 8 3434 3748 148145483 148145171 1.690000e-66 265.0
37 TraesCS5D01G102200 chr1D 94.298 228 12 1 1 228 320232422 320232196 1.630000e-91 348.0
38 TraesCS5D01G102200 chr6D 92.917 240 12 3 1 238 150330330 150330094 2.110000e-90 344.0
39 TraesCS5D01G102200 chr6D 84.892 278 35 7 7521 7795 471476797 471477070 2.810000e-69 274.0
40 TraesCS5D01G102200 chr6D 94.595 37 1 1 7861 7897 431174095 431174060 1.000000e-03 56.5
41 TraesCS5D01G102200 chr6D 100.000 28 0 0 7420 7447 30080815 30080788 1.400000e-02 52.8
42 TraesCS5D01G102200 chr2D 84.892 278 26 13 7530 7803 376818465 376818730 4.700000e-67 267.0
43 TraesCS5D01G102200 chr2D 100.000 29 0 0 7419 7447 380421490 380421518 4.000000e-03 54.7
44 TraesCS5D01G102200 chr2B 84.672 274 35 6 7525 7795 361289594 361289863 4.700000e-67 267.0
45 TraesCS5D01G102200 chr2B 94.030 67 4 0 239 305 326480603 326480537 1.400000e-17 102.0
46 TraesCS5D01G102200 chr4A 100.000 28 0 0 7421 7448 292381956 292381929 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G102200 chr5D 115398028 115405924 7896 False 14584.000000 14584 100.000000 1 7897 1 chr5D.!!$F1 7896
1 TraesCS5D01G102200 chr5A 121408638 121415419 6781 False 3647.666667 8065 94.821000 305 7427 3 chr5A.!!$F3 7122
2 TraesCS5D01G102200 chr5B 126595339 126604445 9106 False 3920.333333 6809 95.592667 305 7800 3 chr5B.!!$F2 7495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 556 0.321830 GGTTTGCCATTGCCATTGCT 60.322 50.000 0.00 0.00 36.33 3.91 F
551 559 1.524848 TTGCCATTGCCATTGCTTTG 58.475 45.000 0.00 0.00 38.71 2.77 F
962 972 3.883830 TTTGTCTGTGCATTGTTGGTT 57.116 38.095 0.00 0.00 0.00 3.67 F
2086 2099 1.268625 GTACCGGCAAAAGGTGGAAAG 59.731 52.381 0.00 0.00 42.83 2.62 F
2884 2900 1.913778 ATGATTGCCTCAACAGTGCA 58.086 45.000 0.00 0.00 37.44 4.57 F
3985 4005 2.094675 AGTCCTGGAATTGGCAATTCG 58.905 47.619 34.33 25.31 46.45 3.34 F
4936 6810 0.971959 CTGCCTTGCCCATGCCTAAA 60.972 55.000 0.00 0.00 36.33 1.85 F
6091 7966 0.251077 ATAGTACTACCTCCGCCCCG 60.251 60.000 4.31 0.00 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 1663 4.580167 ACATCAGCAAGCAACAAAGAGTTA 59.420 37.500 0.00 0.00 38.74 2.24 R
2086 2099 4.641989 AGATGGACTGTAAACATGAATGGC 59.358 41.667 0.00 0.00 0.00 4.40 R
2884 2900 0.625683 ATCTGGCTCCTCCCCAACAT 60.626 55.000 0.00 0.00 30.66 2.71 R
2976 2992 3.304057 GCGGTTTCTTCTTCTGAACAAGG 60.304 47.826 5.72 0.00 0.00 3.61 R
4461 6335 0.108615 ATGCTCCGAAGAGTGTTCCG 60.109 55.000 0.00 0.00 42.59 4.30 R
5610 7484 1.530293 CTGCACTCTGTCTGAAGTTGC 59.470 52.381 0.00 0.00 0.00 4.17 R
6107 7982 0.038892 TTGTCGACCTGGAACTACGC 60.039 55.000 14.12 0.00 0.00 4.42 R
7453 9377 0.743345 GCTTTGGCCGGTACACCTAG 60.743 60.000 1.90 2.08 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 8.937634 ATGACGATTATAGGTTTTCTTACGTT 57.062 30.769 0.00 0.00 0.00 3.99
92 93 8.398491 TGACGATTATAGGTTTTCTTACGTTC 57.602 34.615 0.00 0.00 0.00 3.95
93 94 8.246180 TGACGATTATAGGTTTTCTTACGTTCT 58.754 33.333 0.00 0.00 0.00 3.01
94 95 8.626093 ACGATTATAGGTTTTCTTACGTTCTC 57.374 34.615 0.00 0.00 0.00 2.87
95 96 7.704047 ACGATTATAGGTTTTCTTACGTTCTCC 59.296 37.037 0.00 0.00 0.00 3.71
96 97 7.919621 CGATTATAGGTTTTCTTACGTTCTCCT 59.080 37.037 0.00 0.00 0.00 3.69
97 98 9.597170 GATTATAGGTTTTCTTACGTTCTCCTT 57.403 33.333 0.00 0.00 0.00 3.36
98 99 9.955102 ATTATAGGTTTTCTTACGTTCTCCTTT 57.045 29.630 0.00 0.00 0.00 3.11
99 100 9.783081 TTATAGGTTTTCTTACGTTCTCCTTTT 57.217 29.630 0.00 0.00 0.00 2.27
101 102 9.955102 ATAGGTTTTCTTACGTTCTCCTTTTAT 57.045 29.630 0.00 0.00 0.00 1.40
102 103 8.095937 AGGTTTTCTTACGTTCTCCTTTTATG 57.904 34.615 0.00 0.00 0.00 1.90
103 104 7.718314 AGGTTTTCTTACGTTCTCCTTTTATGT 59.282 33.333 0.00 0.00 0.00 2.29
104 105 8.013947 GGTTTTCTTACGTTCTCCTTTTATGTC 58.986 37.037 0.00 0.00 0.00 3.06
105 106 8.771766 GTTTTCTTACGTTCTCCTTTTATGTCT 58.228 33.333 0.00 0.00 0.00 3.41
106 107 9.985730 TTTTCTTACGTTCTCCTTTTATGTCTA 57.014 29.630 0.00 0.00 0.00 2.59
107 108 9.985730 TTTCTTACGTTCTCCTTTTATGTCTAA 57.014 29.630 0.00 0.00 0.00 2.10
108 109 9.985730 TTCTTACGTTCTCCTTTTATGTCTAAA 57.014 29.630 0.00 0.00 0.00 1.85
109 110 9.985730 TCTTACGTTCTCCTTTTATGTCTAAAA 57.014 29.630 0.00 0.00 35.89 1.52
156 157 9.991388 GTAAAATTACGGTGCATAGATGTTAAA 57.009 29.630 0.00 0.00 0.00 1.52
161 162 9.772973 ATTACGGTGCATAGATGTTAAAATAGA 57.227 29.630 0.00 0.00 0.00 1.98
162 163 7.715265 ACGGTGCATAGATGTTAAAATAGAG 57.285 36.000 0.00 0.00 0.00 2.43
163 164 6.706270 ACGGTGCATAGATGTTAAAATAGAGG 59.294 38.462 0.00 0.00 0.00 3.69
164 165 6.706270 CGGTGCATAGATGTTAAAATAGAGGT 59.294 38.462 0.00 0.00 0.00 3.85
165 166 7.307396 CGGTGCATAGATGTTAAAATAGAGGTG 60.307 40.741 0.00 0.00 0.00 4.00
166 167 7.041098 GGTGCATAGATGTTAAAATAGAGGTGG 60.041 40.741 0.00 0.00 0.00 4.61
167 168 6.998074 TGCATAGATGTTAAAATAGAGGTGGG 59.002 38.462 0.00 0.00 0.00 4.61
168 169 6.998673 GCATAGATGTTAAAATAGAGGTGGGT 59.001 38.462 0.00 0.00 0.00 4.51
169 170 7.041098 GCATAGATGTTAAAATAGAGGTGGGTG 60.041 40.741 0.00 0.00 0.00 4.61
170 171 6.636454 AGATGTTAAAATAGAGGTGGGTGA 57.364 37.500 0.00 0.00 0.00 4.02
171 172 7.027874 AGATGTTAAAATAGAGGTGGGTGAA 57.972 36.000 0.00 0.00 0.00 3.18
172 173 7.112779 AGATGTTAAAATAGAGGTGGGTGAAG 58.887 38.462 0.00 0.00 0.00 3.02
173 174 6.442541 TGTTAAAATAGAGGTGGGTGAAGA 57.557 37.500 0.00 0.00 0.00 2.87
174 175 6.843752 TGTTAAAATAGAGGTGGGTGAAGAA 58.156 36.000 0.00 0.00 0.00 2.52
175 176 7.466804 TGTTAAAATAGAGGTGGGTGAAGAAT 58.533 34.615 0.00 0.00 0.00 2.40
176 177 8.607713 TGTTAAAATAGAGGTGGGTGAAGAATA 58.392 33.333 0.00 0.00 0.00 1.75
177 178 9.457436 GTTAAAATAGAGGTGGGTGAAGAATAA 57.543 33.333 0.00 0.00 0.00 1.40
184 185 7.290813 AGAGGTGGGTGAAGAATAATTATTCC 58.709 38.462 27.18 17.01 42.29 3.01
185 186 7.129504 AGAGGTGGGTGAAGAATAATTATTCCT 59.870 37.037 27.18 18.76 42.29 3.36
186 187 7.290813 AGGTGGGTGAAGAATAATTATTCCTC 58.709 38.462 27.18 24.55 42.29 3.71
187 188 7.060421 GGTGGGTGAAGAATAATTATTCCTCA 58.940 38.462 25.58 25.58 42.29 3.86
193 194 7.290061 TGAAGAATAATTATTCCTCACCCAGG 58.710 38.462 25.58 0.00 42.29 4.45
204 205 3.377346 CTCACCCAGGATGACGAATAG 57.623 52.381 0.00 0.00 39.69 1.73
205 206 2.695666 CTCACCCAGGATGACGAATAGT 59.304 50.000 0.00 0.00 39.69 2.12
270 271 8.986477 AAAGTTAATGCAATTGATCTTACACC 57.014 30.769 10.34 0.00 36.99 4.16
271 272 7.701539 AGTTAATGCAATTGATCTTACACCA 57.298 32.000 10.34 0.00 36.99 4.17
272 273 8.297470 AGTTAATGCAATTGATCTTACACCAT 57.703 30.769 10.34 0.00 36.99 3.55
273 274 8.408601 AGTTAATGCAATTGATCTTACACCATC 58.591 33.333 10.34 0.00 36.99 3.51
274 275 4.880886 TGCAATTGATCTTACACCATCG 57.119 40.909 10.34 0.00 0.00 3.84
275 276 4.260985 TGCAATTGATCTTACACCATCGT 58.739 39.130 10.34 0.00 0.00 3.73
276 277 4.332543 TGCAATTGATCTTACACCATCGTC 59.667 41.667 10.34 0.00 0.00 4.20
277 278 4.572389 GCAATTGATCTTACACCATCGTCT 59.428 41.667 10.34 0.00 0.00 4.18
278 279 5.753438 GCAATTGATCTTACACCATCGTCTA 59.247 40.000 10.34 0.00 0.00 2.59
279 280 6.257849 GCAATTGATCTTACACCATCGTCTAA 59.742 38.462 10.34 0.00 0.00 2.10
280 281 7.517417 GCAATTGATCTTACACCATCGTCTAAG 60.517 40.741 10.34 0.00 0.00 2.18
281 282 6.769134 TTGATCTTACACCATCGTCTAAGA 57.231 37.500 0.00 0.00 35.00 2.10
282 283 6.769134 TGATCTTACACCATCGTCTAAGAA 57.231 37.500 0.00 0.00 34.43 2.52
283 284 7.348080 TGATCTTACACCATCGTCTAAGAAT 57.652 36.000 0.00 0.00 34.43 2.40
284 285 8.459911 TGATCTTACACCATCGTCTAAGAATA 57.540 34.615 0.00 0.00 34.43 1.75
285 286 9.078990 TGATCTTACACCATCGTCTAAGAATAT 57.921 33.333 0.00 0.00 34.43 1.28
292 293 8.470805 ACACCATCGTCTAAGAATATATCATCC 58.529 37.037 0.00 0.00 0.00 3.51
293 294 8.690884 CACCATCGTCTAAGAATATATCATCCT 58.309 37.037 0.00 0.00 0.00 3.24
294 295 9.261035 ACCATCGTCTAAGAATATATCATCCTT 57.739 33.333 0.00 0.00 0.00 3.36
295 296 9.743057 CCATCGTCTAAGAATATATCATCCTTC 57.257 37.037 0.00 0.00 0.00 3.46
296 297 9.444534 CATCGTCTAAGAATATATCATCCTTCG 57.555 37.037 0.00 0.00 0.00 3.79
297 298 8.563123 TCGTCTAAGAATATATCATCCTTCGT 57.437 34.615 0.00 0.00 0.00 3.85
298 299 9.662947 TCGTCTAAGAATATATCATCCTTCGTA 57.337 33.333 0.00 0.00 0.00 3.43
311 312 0.876342 CTTCGTAAGGCATCCGAGGC 60.876 60.000 0.00 0.00 38.47 4.70
464 465 1.526225 GCTGGGGTTTATCCGAGGC 60.526 63.158 0.00 0.00 37.00 4.70
511 519 1.343142 GGGTTTGCCGTTCCTCAAAAT 59.657 47.619 0.00 0.00 34.44 1.82
548 556 0.321830 GGTTTGCCATTGCCATTGCT 60.322 50.000 0.00 0.00 36.33 3.91
549 557 1.525941 GTTTGCCATTGCCATTGCTT 58.474 45.000 0.00 0.00 38.71 3.91
550 558 1.881324 GTTTGCCATTGCCATTGCTTT 59.119 42.857 0.00 0.00 38.71 3.51
551 559 1.524848 TTGCCATTGCCATTGCTTTG 58.475 45.000 0.00 0.00 38.71 2.77
962 972 3.883830 TTTGTCTGTGCATTGTTGGTT 57.116 38.095 0.00 0.00 0.00 3.67
1814 1827 4.808895 CACTTTTTGGGTTCCAAGCTTAAC 59.191 41.667 0.00 0.36 44.84 2.01
2086 2099 1.268625 GTACCGGCAAAAGGTGGAAAG 59.731 52.381 0.00 0.00 42.83 2.62
2884 2900 1.913778 ATGATTGCCTCAACAGTGCA 58.086 45.000 0.00 0.00 37.44 4.57
3170 3186 7.762159 TGGTCCTTTTAAACATTTTGTTGAGTC 59.238 33.333 0.00 0.00 40.14 3.36
3709 3729 3.438781 TCCACGCCATAATTTGTCTTGAC 59.561 43.478 0.00 0.00 0.00 3.18
3985 4005 2.094675 AGTCCTGGAATTGGCAATTCG 58.905 47.619 34.33 25.31 46.45 3.34
3993 4013 4.142049 TGGAATTGGCAATTCGGTTAATCC 60.142 41.667 34.33 24.37 46.45 3.01
4009 4029 3.703001 AATCCGGTATGGGATAGCTTG 57.297 47.619 0.00 0.00 46.08 4.01
4188 4208 3.750639 TTTGAGTTTTGACCGTGACAC 57.249 42.857 0.00 0.00 0.00 3.67
4461 6335 9.988350 CTGTATGTTGTATGTTCCTTTTCATAC 57.012 33.333 7.95 7.95 43.58 2.39
4500 6374 3.191078 TGACTTTGCCCATTTGTTTGG 57.809 42.857 0.00 0.00 36.46 3.28
4536 6410 2.216898 GGATATTCTGTCTGGTGCAGC 58.783 52.381 9.47 9.47 34.21 5.25
4546 6420 2.031682 GTCTGGTGCAGCTTACAGTTTG 60.032 50.000 18.08 0.00 32.92 2.93
4936 6810 0.971959 CTGCCTTGCCCATGCCTAAA 60.972 55.000 0.00 0.00 36.33 1.85
5107 6981 4.946478 ACAAGATCTATCTGGTGTAGCC 57.054 45.455 0.00 0.00 39.56 3.93
5109 6983 4.586841 ACAAGATCTATCTGGTGTAGCCTC 59.413 45.833 0.00 0.00 39.56 4.70
5110 6984 4.461450 AGATCTATCTGGTGTAGCCTCA 57.539 45.455 0.00 0.00 35.42 3.86
5186 7060 4.623167 CCAATCTTGTAACTCAGTCTGTCG 59.377 45.833 0.00 0.00 0.00 4.35
5610 7484 5.791974 CACTTTCACTTATGAACAGCAATCG 59.208 40.000 0.00 0.00 44.66 3.34
5785 7659 5.499139 TTTCCGAGCCAAATTCATATCAC 57.501 39.130 0.00 0.00 0.00 3.06
5874 7748 4.261405 CCAAATTTCTGTTGCCACGTCTTA 60.261 41.667 0.00 0.00 0.00 2.10
5906 7780 4.459337 GTGGGTTTTGGATTCGAAGATTCT 59.541 41.667 3.35 0.00 37.13 2.40
6008 7883 1.160137 AATGAGTTCCTGAGCGCAAC 58.840 50.000 11.47 4.55 0.00 4.17
6009 7884 0.322975 ATGAGTTCCTGAGCGCAACT 59.677 50.000 11.47 10.34 32.93 3.16
6038 7913 3.247411 CGTGTATGCTTGTCAAGTTGTCA 59.753 43.478 14.03 0.06 0.00 3.58
6073 7948 3.609853 TGAATAGGCTCGTGCTGAAAAT 58.390 40.909 9.61 0.00 39.59 1.82
6074 7949 4.765273 TGAATAGGCTCGTGCTGAAAATA 58.235 39.130 9.61 0.00 39.59 1.40
6075 7950 4.811024 TGAATAGGCTCGTGCTGAAAATAG 59.189 41.667 9.61 0.00 39.59 1.73
6076 7951 2.770164 AGGCTCGTGCTGAAAATAGT 57.230 45.000 9.61 0.00 39.59 2.12
6077 7952 3.887621 AGGCTCGTGCTGAAAATAGTA 57.112 42.857 9.61 0.00 39.59 1.82
6078 7953 3.522553 AGGCTCGTGCTGAAAATAGTAC 58.477 45.455 9.61 0.00 39.59 2.73
6079 7954 3.195825 AGGCTCGTGCTGAAAATAGTACT 59.804 43.478 9.61 0.00 39.59 2.73
6080 7955 4.401519 AGGCTCGTGCTGAAAATAGTACTA 59.598 41.667 4.77 4.77 39.59 1.82
6081 7956 4.503370 GGCTCGTGCTGAAAATAGTACTAC 59.497 45.833 4.31 0.00 39.59 2.73
6082 7957 4.503370 GCTCGTGCTGAAAATAGTACTACC 59.497 45.833 4.31 0.00 36.03 3.18
6083 7958 5.679127 GCTCGTGCTGAAAATAGTACTACCT 60.679 44.000 4.31 0.00 36.03 3.08
6084 7959 5.888105 TCGTGCTGAAAATAGTACTACCTC 58.112 41.667 4.31 3.01 32.03 3.85
6085 7960 5.041940 CGTGCTGAAAATAGTACTACCTCC 58.958 45.833 4.31 0.00 32.03 4.30
6086 7961 5.041940 GTGCTGAAAATAGTACTACCTCCG 58.958 45.833 4.31 0.50 31.59 4.63
6087 7962 4.049869 GCTGAAAATAGTACTACCTCCGC 58.950 47.826 4.31 6.56 0.00 5.54
6088 7963 4.618965 CTGAAAATAGTACTACCTCCGCC 58.381 47.826 4.31 0.00 0.00 6.13
6089 7964 3.385755 TGAAAATAGTACTACCTCCGCCC 59.614 47.826 4.31 0.00 0.00 6.13
6090 7965 2.006805 AATAGTACTACCTCCGCCCC 57.993 55.000 4.31 0.00 0.00 5.80
6091 7966 0.251077 ATAGTACTACCTCCGCCCCG 60.251 60.000 4.31 0.00 0.00 5.73
6101 7976 3.223226 CCGCCCCGGTGTATAAGT 58.777 61.111 0.00 0.00 42.73 2.24
6102 7977 1.068585 CCGCCCCGGTGTATAAGTC 59.931 63.158 0.00 0.00 42.73 3.01
6103 7978 1.678598 CCGCCCCGGTGTATAAGTCA 61.679 60.000 0.00 0.00 42.73 3.41
6104 7979 0.391597 CGCCCCGGTGTATAAGTCAT 59.608 55.000 0.00 0.00 0.00 3.06
6105 7980 1.202604 CGCCCCGGTGTATAAGTCATT 60.203 52.381 0.00 0.00 0.00 2.57
6106 7981 2.490991 GCCCCGGTGTATAAGTCATTC 58.509 52.381 0.00 0.00 0.00 2.67
6107 7982 2.750948 CCCCGGTGTATAAGTCATTCG 58.249 52.381 0.00 0.00 0.00 3.34
6108 7983 2.132762 CCCGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
6109 7984 1.784856 CCGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
6110 7985 2.456989 CGGTGTATAAGTCATTCGCGT 58.543 47.619 5.77 0.00 0.00 6.01
6111 7986 3.548616 CCGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
6112 7987 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
6113 7988 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
6114 7989 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
6115 7990 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
6116 7991 5.172771 GTGTATAAGTCATTCGCGTAGTTCC 59.827 44.000 5.77 0.00 0.00 3.62
6117 7992 2.736144 AAGTCATTCGCGTAGTTCCA 57.264 45.000 5.77 0.00 0.00 3.53
6118 7993 2.279582 AGTCATTCGCGTAGTTCCAG 57.720 50.000 5.77 0.00 0.00 3.86
6119 7994 1.135083 AGTCATTCGCGTAGTTCCAGG 60.135 52.381 5.77 0.00 0.00 4.45
6120 7995 0.892755 TCATTCGCGTAGTTCCAGGT 59.107 50.000 5.77 0.00 0.00 4.00
6121 7996 1.135199 TCATTCGCGTAGTTCCAGGTC 60.135 52.381 5.77 0.00 0.00 3.85
6122 7997 0.179145 ATTCGCGTAGTTCCAGGTCG 60.179 55.000 5.77 0.00 0.00 4.79
6123 7998 1.236616 TTCGCGTAGTTCCAGGTCGA 61.237 55.000 5.77 0.00 0.00 4.20
6124 7999 1.513586 CGCGTAGTTCCAGGTCGAC 60.514 63.158 7.13 7.13 0.00 4.20
6125 8000 1.582968 GCGTAGTTCCAGGTCGACA 59.417 57.895 18.91 0.00 0.00 4.35
6126 8001 0.038892 GCGTAGTTCCAGGTCGACAA 60.039 55.000 18.91 0.00 0.00 3.18
6127 8002 1.403780 GCGTAGTTCCAGGTCGACAAT 60.404 52.381 18.91 1.75 0.00 2.71
6128 8003 2.929592 GCGTAGTTCCAGGTCGACAATT 60.930 50.000 18.91 2.26 0.00 2.32
6129 8004 3.323243 CGTAGTTCCAGGTCGACAATTT 58.677 45.455 18.91 0.00 0.00 1.82
6130 8005 4.487948 CGTAGTTCCAGGTCGACAATTTA 58.512 43.478 18.91 0.00 0.00 1.40
6131 8006 4.925054 CGTAGTTCCAGGTCGACAATTTAA 59.075 41.667 18.91 1.74 0.00 1.52
6132 8007 5.164022 CGTAGTTCCAGGTCGACAATTTAAC 60.164 44.000 18.91 13.65 0.00 2.01
6133 8008 4.969484 AGTTCCAGGTCGACAATTTAACT 58.031 39.130 18.91 15.53 0.00 2.24
6134 8009 6.105397 AGTTCCAGGTCGACAATTTAACTA 57.895 37.500 18.91 0.00 0.00 2.24
6135 8010 6.708285 AGTTCCAGGTCGACAATTTAACTAT 58.292 36.000 18.91 0.00 0.00 2.12
6136 8011 6.817140 AGTTCCAGGTCGACAATTTAACTATC 59.183 38.462 18.91 0.00 0.00 2.08
6137 8012 6.540438 TCCAGGTCGACAATTTAACTATCT 57.460 37.500 18.91 0.00 0.00 1.98
6138 8013 7.649533 TCCAGGTCGACAATTTAACTATCTA 57.350 36.000 18.91 0.00 0.00 1.98
6139 8014 8.070034 TCCAGGTCGACAATTTAACTATCTAA 57.930 34.615 18.91 0.00 0.00 2.10
6140 8015 8.533657 TCCAGGTCGACAATTTAACTATCTAAA 58.466 33.333 18.91 0.00 0.00 1.85
6141 8016 9.326413 CCAGGTCGACAATTTAACTATCTAAAT 57.674 33.333 18.91 0.00 33.78 1.40
6203 8078 6.716934 ACATCCGTGTAGAAATCTAGTGAT 57.283 37.500 0.00 0.00 36.63 3.06
6204 8079 7.818997 ACATCCGTGTAGAAATCTAGTGATA 57.181 36.000 0.00 0.00 36.63 2.15
6205 8080 8.410673 ACATCCGTGTAGAAATCTAGTGATAT 57.589 34.615 0.00 0.00 36.63 1.63
6206 8081 9.516546 ACATCCGTGTAGAAATCTAGTGATATA 57.483 33.333 0.00 0.00 36.63 0.86
6207 8082 9.776158 CATCCGTGTAGAAATCTAGTGATATAC 57.224 37.037 0.00 0.00 31.70 1.47
6208 8083 9.742144 ATCCGTGTAGAAATCTAGTGATATACT 57.258 33.333 0.00 0.00 43.56 2.12
6209 8084 9.570468 TCCGTGTAGAAATCTAGTGATATACTT 57.430 33.333 0.00 0.00 40.89 2.24
6252 8127 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
6253 8128 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
6255 8130 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
6256 8131 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
6257 8132 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
6258 8133 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
6259 8134 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
6260 8135 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
6261 8136 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
6262 8137 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
6263 8138 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
6264 8139 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
6265 8140 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
6266 8141 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
6267 8142 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
6268 8143 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
6269 8144 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
6270 8145 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
6271 8146 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
6272 8147 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
6273 8148 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
6274 8149 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
6275 8150 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
6276 8151 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
6277 8152 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
6278 8153 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
6279 8154 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
6280 8155 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
6281 8156 2.097954 ACGCGAATGACTTATACACCGA 59.902 45.455 15.93 0.00 0.00 4.69
6282 8157 2.719556 CGCGAATGACTTATACACCGAG 59.280 50.000 0.00 0.00 0.00 4.63
6283 8158 3.050619 GCGAATGACTTATACACCGAGG 58.949 50.000 0.00 0.00 0.00 4.63
6284 8159 3.490419 GCGAATGACTTATACACCGAGGT 60.490 47.826 0.00 0.00 0.00 3.85
6435 8310 3.479203 CCATGAGGCCGCCAGGTA 61.479 66.667 13.15 0.00 40.50 3.08
6586 8461 0.330604 TCTACACCAGTAGTCCGGCT 59.669 55.000 0.00 0.00 46.30 5.52
6626 8501 1.334869 CTTGTCAGAACAACAGGTGCC 59.665 52.381 0.00 0.00 40.45 5.01
6693 8577 0.616111 ACCCGCTCCTCATCTTCAGT 60.616 55.000 0.00 0.00 0.00 3.41
6918 8808 4.810345 AGGAAGAGGACCTAGACTAATGG 58.190 47.826 0.00 0.00 35.84 3.16
7021 8919 1.692519 GCCCTGTATATGACCGTCCTT 59.307 52.381 0.00 0.00 0.00 3.36
7042 8940 7.389607 GTCCTTACCTTCTGTTGCTGTAAATTA 59.610 37.037 0.00 0.00 0.00 1.40
7111 9012 3.931241 ATGGGTCCTCATCTCATCCTA 57.069 47.619 0.00 0.00 0.00 2.94
7114 9015 4.370776 TGGGTCCTCATCTCATCCTAAAA 58.629 43.478 0.00 0.00 0.00 1.52
7174 9089 4.649267 TTGATACACCAATGACCCAAGA 57.351 40.909 0.00 0.00 0.00 3.02
7330 9253 2.755103 CACTTCTAAAAGGTCCCATGGC 59.245 50.000 6.09 0.00 36.78 4.40
7338 9261 3.756082 AAGGTCCCATGGCTTTCAATA 57.244 42.857 6.09 0.00 0.00 1.90
7347 9271 6.039270 TCCCATGGCTTTCAATATTTTACTCG 59.961 38.462 6.09 0.00 0.00 4.18
7432 9356 9.856162 TTTTTACTTGTTTTATGTACTCCCTCT 57.144 29.630 0.00 0.00 0.00 3.69
7451 9375 7.815383 TCCCTCTGATCCATATTAATTTGTGT 58.185 34.615 5.36 0.00 0.00 3.72
7453 9377 9.003658 CCCTCTGATCCATATTAATTTGTGTAC 57.996 37.037 5.36 0.00 0.00 2.90
7551 9475 4.150897 TGCTCCCATGATACCAACTTAC 57.849 45.455 0.00 0.00 0.00 2.34
7624 9548 5.195379 GTTTAGAACACATGTGTCGACAAC 58.805 41.667 30.64 24.01 44.13 3.32
7634 9558 3.822940 TGTGTCGACAACCCCTAAAAAT 58.177 40.909 21.95 0.00 0.00 1.82
7637 9561 5.217393 GTGTCGACAACCCCTAAAAATTTC 58.783 41.667 21.95 0.00 0.00 2.17
7688 9612 9.086336 GAGAAACAAAAATGACAAATTCAGACA 57.914 29.630 0.00 0.00 37.77 3.41
7692 9616 9.550406 AACAAAAATGACAAATTCAGACATGAT 57.450 25.926 0.00 0.00 37.77 2.45
7809 9734 5.730296 TTTTTAGGGGATGATTCGCAAAA 57.270 34.783 0.00 0.00 36.56 2.44
7810 9735 5.930837 TTTTAGGGGATGATTCGCAAAAT 57.069 34.783 0.00 0.00 36.56 1.82
7811 9736 7.411486 TTTTTAGGGGATGATTCGCAAAATA 57.589 32.000 0.00 0.00 36.56 1.40
7812 9737 7.411486 TTTTAGGGGATGATTCGCAAAATAA 57.589 32.000 0.00 0.00 36.56 1.40
7813 9738 7.411486 TTTAGGGGATGATTCGCAAAATAAA 57.589 32.000 0.00 0.00 36.56 1.40
7814 9739 5.930837 AGGGGATGATTCGCAAAATAAAA 57.069 34.783 0.00 0.00 36.56 1.52
7815 9740 6.484364 AGGGGATGATTCGCAAAATAAAAT 57.516 33.333 0.00 0.00 36.56 1.82
7816 9741 7.595819 AGGGGATGATTCGCAAAATAAAATA 57.404 32.000 0.00 0.00 36.56 1.40
7817 9742 8.017418 AGGGGATGATTCGCAAAATAAAATAA 57.983 30.769 0.00 0.00 36.56 1.40
7818 9743 8.482128 AGGGGATGATTCGCAAAATAAAATAAA 58.518 29.630 0.00 0.00 36.56 1.40
7819 9744 9.103861 GGGGATGATTCGCAAAATAAAATAAAA 57.896 29.630 0.00 0.00 36.56 1.52
7828 9753 9.757227 TCGCAAAATAAAATAAAATAGGGGATG 57.243 29.630 0.00 0.00 0.00 3.51
7829 9754 9.541143 CGCAAAATAAAATAAAATAGGGGATGT 57.459 29.630 0.00 0.00 0.00 3.06
7842 9767 8.629821 AAATAGGGGATGTCTACATATATGCT 57.370 34.615 12.79 3.21 36.57 3.79
7843 9768 5.946942 AGGGGATGTCTACATATATGCTG 57.053 43.478 12.79 5.99 36.57 4.41
7844 9769 5.345418 AGGGGATGTCTACATATATGCTGT 58.655 41.667 12.79 0.00 36.57 4.40
7845 9770 5.188555 AGGGGATGTCTACATATATGCTGTG 59.811 44.000 12.79 1.22 36.57 3.66
7846 9771 5.187772 GGGGATGTCTACATATATGCTGTGA 59.812 44.000 12.79 3.49 36.57 3.58
7847 9772 6.295859 GGGGATGTCTACATATATGCTGTGAA 60.296 42.308 12.79 0.00 36.57 3.18
7848 9773 6.591834 GGGATGTCTACATATATGCTGTGAAC 59.408 42.308 12.79 4.00 36.57 3.18
7849 9774 7.154656 GGATGTCTACATATATGCTGTGAACA 58.845 38.462 12.79 8.95 36.57 3.18
7850 9775 7.821359 GGATGTCTACATATATGCTGTGAACAT 59.179 37.037 12.79 12.68 36.56 2.71
7851 9776 8.768957 ATGTCTACATATATGCTGTGAACATC 57.231 34.615 12.79 0.00 32.35 3.06
7852 9777 7.154656 TGTCTACATATATGCTGTGAACATCC 58.845 38.462 12.79 0.00 0.00 3.51
7853 9778 7.154656 GTCTACATATATGCTGTGAACATCCA 58.845 38.462 12.79 0.00 0.00 3.41
7854 9779 7.821359 GTCTACATATATGCTGTGAACATCCAT 59.179 37.037 12.79 3.30 0.00 3.41
7855 9780 6.812879 ACATATATGCTGTGAACATCCATG 57.187 37.500 12.79 0.00 0.00 3.66
7856 9781 6.536447 ACATATATGCTGTGAACATCCATGA 58.464 36.000 12.79 0.00 0.00 3.07
7857 9782 7.173032 ACATATATGCTGTGAACATCCATGAT 58.827 34.615 12.79 0.00 0.00 2.45
7858 9783 7.668469 ACATATATGCTGTGAACATCCATGATT 59.332 33.333 12.79 0.00 0.00 2.57
7859 9784 6.971726 ATATGCTGTGAACATCCATGATTT 57.028 33.333 0.00 0.00 0.00 2.17
7860 9785 4.443913 TGCTGTGAACATCCATGATTTG 57.556 40.909 0.00 0.00 0.00 2.32
7861 9786 3.827876 TGCTGTGAACATCCATGATTTGT 59.172 39.130 0.00 0.00 0.00 2.83
7862 9787 4.281435 TGCTGTGAACATCCATGATTTGTT 59.719 37.500 0.00 0.65 36.34 2.83
7863 9788 5.221481 TGCTGTGAACATCCATGATTTGTTT 60.221 36.000 0.00 0.00 33.92 2.83
7864 9789 5.346822 GCTGTGAACATCCATGATTTGTTTC 59.653 40.000 0.00 0.70 33.92 2.78
7865 9790 5.459768 TGTGAACATCCATGATTTGTTTCG 58.540 37.500 0.00 0.00 33.92 3.46
7866 9791 4.858692 GTGAACATCCATGATTTGTTTCGG 59.141 41.667 0.00 0.00 33.92 4.30
7867 9792 4.764308 TGAACATCCATGATTTGTTTCGGA 59.236 37.500 0.00 0.00 33.92 4.55
7868 9793 5.242615 TGAACATCCATGATTTGTTTCGGAA 59.757 36.000 0.00 0.00 33.92 4.30
7869 9794 5.920193 ACATCCATGATTTGTTTCGGAAT 57.080 34.783 0.00 0.00 0.00 3.01
7870 9795 6.284891 ACATCCATGATTTGTTTCGGAATT 57.715 33.333 0.00 0.00 0.00 2.17
7871 9796 6.700352 ACATCCATGATTTGTTTCGGAATTT 58.300 32.000 0.00 0.00 0.00 1.82
7872 9797 7.160726 ACATCCATGATTTGTTTCGGAATTTT 58.839 30.769 0.00 0.00 0.00 1.82
7873 9798 7.661027 ACATCCATGATTTGTTTCGGAATTTTT 59.339 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 8.937634 AACGTAAGAAAACCTATAATCGTCAT 57.062 30.769 0.00 0.00 43.62 3.06
67 68 8.246180 AGAACGTAAGAAAACCTATAATCGTCA 58.754 33.333 0.00 0.00 43.62 4.35
68 69 8.626093 AGAACGTAAGAAAACCTATAATCGTC 57.374 34.615 0.00 0.00 43.62 4.20
69 70 7.704047 GGAGAACGTAAGAAAACCTATAATCGT 59.296 37.037 0.00 0.00 43.62 3.73
70 71 7.919621 AGGAGAACGTAAGAAAACCTATAATCG 59.080 37.037 0.00 0.00 43.62 3.34
71 72 9.597170 AAGGAGAACGTAAGAAAACCTATAATC 57.403 33.333 0.00 0.00 43.62 1.75
72 73 9.955102 AAAGGAGAACGTAAGAAAACCTATAAT 57.045 29.630 0.00 0.00 43.62 1.28
73 74 9.783081 AAAAGGAGAACGTAAGAAAACCTATAA 57.217 29.630 0.00 0.00 43.62 0.98
75 76 9.955102 ATAAAAGGAGAACGTAAGAAAACCTAT 57.045 29.630 0.00 0.00 43.62 2.57
76 77 9.211485 CATAAAAGGAGAACGTAAGAAAACCTA 57.789 33.333 0.00 0.00 43.62 3.08
77 78 7.718314 ACATAAAAGGAGAACGTAAGAAAACCT 59.282 33.333 0.00 0.00 43.62 3.50
78 79 7.868775 ACATAAAAGGAGAACGTAAGAAAACC 58.131 34.615 0.00 0.00 43.62 3.27
79 80 8.771766 AGACATAAAAGGAGAACGTAAGAAAAC 58.228 33.333 0.00 0.00 43.62 2.43
80 81 8.897872 AGACATAAAAGGAGAACGTAAGAAAA 57.102 30.769 0.00 0.00 43.62 2.29
81 82 9.985730 TTAGACATAAAAGGAGAACGTAAGAAA 57.014 29.630 0.00 0.00 43.62 2.52
82 83 9.985730 TTTAGACATAAAAGGAGAACGTAAGAA 57.014 29.630 0.00 0.00 43.62 2.52
83 84 9.985730 TTTTAGACATAAAAGGAGAACGTAAGA 57.014 29.630 0.00 0.00 36.24 2.10
130 131 9.991388 TTTAACATCTATGCACCGTAATTTTAC 57.009 29.630 0.00 0.00 0.00 2.01
135 136 9.772973 TCTATTTTAACATCTATGCACCGTAAT 57.227 29.630 0.00 0.00 0.00 1.89
136 137 9.256477 CTCTATTTTAACATCTATGCACCGTAA 57.744 33.333 0.00 0.00 0.00 3.18
137 138 7.870954 CCTCTATTTTAACATCTATGCACCGTA 59.129 37.037 0.00 0.00 0.00 4.02
138 139 6.706270 CCTCTATTTTAACATCTATGCACCGT 59.294 38.462 0.00 0.00 0.00 4.83
139 140 6.706270 ACCTCTATTTTAACATCTATGCACCG 59.294 38.462 0.00 0.00 0.00 4.94
140 141 7.041098 CCACCTCTATTTTAACATCTATGCACC 60.041 40.741 0.00 0.00 0.00 5.01
141 142 7.041098 CCCACCTCTATTTTAACATCTATGCAC 60.041 40.741 0.00 0.00 0.00 4.57
142 143 6.998074 CCCACCTCTATTTTAACATCTATGCA 59.002 38.462 0.00 0.00 0.00 3.96
143 144 6.998673 ACCCACCTCTATTTTAACATCTATGC 59.001 38.462 0.00 0.00 0.00 3.14
144 145 8.210946 TCACCCACCTCTATTTTAACATCTATG 58.789 37.037 0.00 0.00 0.00 2.23
145 146 8.331931 TCACCCACCTCTATTTTAACATCTAT 57.668 34.615 0.00 0.00 0.00 1.98
146 147 7.743116 TCACCCACCTCTATTTTAACATCTA 57.257 36.000 0.00 0.00 0.00 1.98
147 148 6.636454 TCACCCACCTCTATTTTAACATCT 57.364 37.500 0.00 0.00 0.00 2.90
148 149 7.110155 TCTTCACCCACCTCTATTTTAACATC 58.890 38.462 0.00 0.00 0.00 3.06
149 150 7.027874 TCTTCACCCACCTCTATTTTAACAT 57.972 36.000 0.00 0.00 0.00 2.71
150 151 6.442541 TCTTCACCCACCTCTATTTTAACA 57.557 37.500 0.00 0.00 0.00 2.41
151 152 7.939784 ATTCTTCACCCACCTCTATTTTAAC 57.060 36.000 0.00 0.00 0.00 2.01
158 159 8.437575 GGAATAATTATTCTTCACCCACCTCTA 58.562 37.037 28.64 0.00 41.33 2.43
159 160 7.129504 AGGAATAATTATTCTTCACCCACCTCT 59.870 37.037 28.64 15.00 41.33 3.69
160 161 7.290813 AGGAATAATTATTCTTCACCCACCTC 58.709 38.462 28.64 13.44 41.33 3.85
161 162 7.091993 TGAGGAATAATTATTCTTCACCCACCT 60.092 37.037 32.86 21.50 46.85 4.00
162 163 7.060421 TGAGGAATAATTATTCTTCACCCACC 58.940 38.462 32.86 18.27 46.85 4.61
169 170 7.751768 CCTGGGTGAGGAATAATTATTCTTC 57.248 40.000 29.75 29.75 46.33 2.87
183 184 0.833287 ATTCGTCATCCTGGGTGAGG 59.167 55.000 20.81 20.81 44.45 3.86
184 185 2.695666 ACTATTCGTCATCCTGGGTGAG 59.304 50.000 10.58 5.05 0.00 3.51
185 186 2.693591 GACTATTCGTCATCCTGGGTGA 59.306 50.000 5.31 5.31 42.37 4.02
186 187 3.099267 GACTATTCGTCATCCTGGGTG 57.901 52.381 0.00 0.00 42.37 4.61
245 246 8.584157 TGGTGTAAGATCAATTGCATTAACTTT 58.416 29.630 0.00 0.00 0.00 2.66
246 247 8.121305 TGGTGTAAGATCAATTGCATTAACTT 57.879 30.769 0.00 0.00 0.00 2.66
247 248 7.701539 TGGTGTAAGATCAATTGCATTAACT 57.298 32.000 0.00 0.00 0.00 2.24
248 249 7.376866 CGATGGTGTAAGATCAATTGCATTAAC 59.623 37.037 0.00 0.00 0.00 2.01
249 250 7.066887 ACGATGGTGTAAGATCAATTGCATTAA 59.933 33.333 0.00 0.00 0.00 1.40
250 251 6.542005 ACGATGGTGTAAGATCAATTGCATTA 59.458 34.615 0.00 0.00 0.00 1.90
251 252 5.357878 ACGATGGTGTAAGATCAATTGCATT 59.642 36.000 0.00 0.00 0.00 3.56
252 253 4.883585 ACGATGGTGTAAGATCAATTGCAT 59.116 37.500 0.00 0.00 0.00 3.96
253 254 4.260985 ACGATGGTGTAAGATCAATTGCA 58.739 39.130 0.00 0.00 0.00 4.08
254 255 4.572389 AGACGATGGTGTAAGATCAATTGC 59.428 41.667 0.00 0.00 0.00 3.56
255 256 7.770801 TTAGACGATGGTGTAAGATCAATTG 57.229 36.000 0.00 0.00 29.48 2.32
266 267 8.470805 GGATGATATATTCTTAGACGATGGTGT 58.529 37.037 0.00 0.00 0.00 4.16
267 268 8.690884 AGGATGATATATTCTTAGACGATGGTG 58.309 37.037 0.00 0.00 0.00 4.17
268 269 8.830915 AGGATGATATATTCTTAGACGATGGT 57.169 34.615 0.00 0.00 0.00 3.55
269 270 9.743057 GAAGGATGATATATTCTTAGACGATGG 57.257 37.037 0.00 0.00 0.00 3.51
270 271 9.444534 CGAAGGATGATATATTCTTAGACGATG 57.555 37.037 0.00 0.00 0.00 3.84
271 272 9.179909 ACGAAGGATGATATATTCTTAGACGAT 57.820 33.333 0.00 0.00 0.00 3.73
272 273 8.563123 ACGAAGGATGATATATTCTTAGACGA 57.437 34.615 0.00 0.00 0.00 4.20
292 293 0.876342 GCCTCGGATGCCTTACGAAG 60.876 60.000 0.00 0.00 36.08 3.79
293 294 1.143183 GCCTCGGATGCCTTACGAA 59.857 57.895 0.00 0.00 36.08 3.85
294 295 1.609635 TTGCCTCGGATGCCTTACGA 61.610 55.000 2.77 0.00 35.14 3.43
295 296 0.742990 TTTGCCTCGGATGCCTTACG 60.743 55.000 2.77 0.00 0.00 3.18
296 297 1.132453 GTTTTGCCTCGGATGCCTTAC 59.868 52.381 2.77 0.00 0.00 2.34
297 298 1.459450 GTTTTGCCTCGGATGCCTTA 58.541 50.000 2.77 0.00 0.00 2.69
298 299 1.586154 CGTTTTGCCTCGGATGCCTT 61.586 55.000 2.77 0.00 0.00 4.35
299 300 2.040544 CGTTTTGCCTCGGATGCCT 61.041 57.895 2.77 0.00 0.00 4.75
300 301 1.862602 AACGTTTTGCCTCGGATGCC 61.863 55.000 0.00 0.00 0.00 4.40
301 302 0.039527 AAACGTTTTGCCTCGGATGC 60.040 50.000 7.96 0.00 0.00 3.91
302 303 1.401018 GGAAACGTTTTGCCTCGGATG 60.401 52.381 15.89 0.00 0.00 3.51
303 304 0.879090 GGAAACGTTTTGCCTCGGAT 59.121 50.000 15.89 0.00 0.00 4.18
447 448 1.148498 GGCCTCGGATAAACCCCAG 59.852 63.158 0.00 0.00 34.64 4.45
448 449 2.737881 CGGCCTCGGATAAACCCCA 61.738 63.158 0.00 0.00 34.64 4.96
449 450 2.110420 CGGCCTCGGATAAACCCC 59.890 66.667 0.00 0.00 34.64 4.95
623 631 3.047877 GCCCACCGAACCGAACAG 61.048 66.667 0.00 0.00 0.00 3.16
1653 1663 4.580167 ACATCAGCAAGCAACAAAGAGTTA 59.420 37.500 0.00 0.00 38.74 2.24
1763 1774 6.347696 TGTTTCCATTGACAAGCAAGAAATT 58.652 32.000 0.00 0.00 40.42 1.82
2086 2099 4.641989 AGATGGACTGTAAACATGAATGGC 59.358 41.667 0.00 0.00 0.00 4.40
2884 2900 0.625683 ATCTGGCTCCTCCCCAACAT 60.626 55.000 0.00 0.00 30.66 2.71
2971 2987 5.734855 TTCTTCTTCTGAACAAGGTTTCG 57.265 39.130 5.72 0.00 0.00 3.46
2976 2992 3.304057 GCGGTTTCTTCTTCTGAACAAGG 60.304 47.826 5.72 0.00 0.00 3.61
3985 4005 3.518303 AGCTATCCCATACCGGATTAACC 59.482 47.826 9.46 0.00 39.80 2.85
3993 4013 3.322254 AGAGAACAAGCTATCCCATACCG 59.678 47.826 0.00 0.00 0.00 4.02
4068 4088 6.769512 TCTAAAAATAGAACACCTGCTCTGT 58.230 36.000 0.00 0.00 0.00 3.41
4112 4132 7.806690 TGACAAAACTCATATGCTAGAAACAC 58.193 34.615 0.00 0.00 0.00 3.32
4114 4134 8.256611 TCTGACAAAACTCATATGCTAGAAAC 57.743 34.615 0.00 0.00 0.00 2.78
4439 4459 6.882140 TCCGTATGAAAAGGAACATACAACAT 59.118 34.615 14.57 0.00 44.94 2.71
4461 6335 0.108615 ATGCTCCGAAGAGTGTTCCG 60.109 55.000 0.00 0.00 42.59 4.30
4500 6374 9.216117 ACAGAATATCCACAACTTAAGTACAAC 57.784 33.333 8.92 0.00 0.00 3.32
4536 6410 6.153680 ACCCTGAGAGATAGACAAACTGTAAG 59.846 42.308 0.00 0.00 42.29 2.34
4546 6420 2.360801 GCACTGACCCTGAGAGATAGAC 59.639 54.545 0.00 0.00 0.00 2.59
4755 6629 1.480137 CATCACTCTCTCCCTCCACAC 59.520 57.143 0.00 0.00 0.00 3.82
4860 6734 6.922957 CTCTAAATGAGGTAGATCTGCAAGAC 59.077 42.308 13.14 0.00 42.08 3.01
5107 6981 2.618709 GGTTTCAGGTTGTGAAGGTGAG 59.381 50.000 0.00 0.00 46.09 3.51
5109 6983 1.681264 GGGTTTCAGGTTGTGAAGGTG 59.319 52.381 0.00 0.00 46.09 4.00
5110 6984 1.749286 CGGGTTTCAGGTTGTGAAGGT 60.749 52.381 0.00 0.00 46.09 3.50
5186 7060 4.497300 TGTACGGGTGCTATACTTTGTTC 58.503 43.478 0.00 0.00 0.00 3.18
5320 7194 1.933853 CGACTTGATTGACCCCGATTC 59.066 52.381 0.00 0.00 0.00 2.52
5510 7384 7.550551 TCAAGATGTATGTAAGCAAGAGGAAAG 59.449 37.037 0.00 0.00 0.00 2.62
5610 7484 1.530293 CTGCACTCTGTCTGAAGTTGC 59.470 52.381 0.00 0.00 0.00 4.17
5658 7532 8.328758 TCCTGTTCCTCAAGTAACAAATCATAT 58.671 33.333 0.00 0.00 35.32 1.78
5681 7555 2.373169 TGCTCAAGGTGAACAGAATCCT 59.627 45.455 0.00 0.00 0.00 3.24
5785 7659 1.825090 TTACCTTGTGCTGCAGATGG 58.175 50.000 24.32 24.32 0.00 3.51
5874 7748 6.071840 TCGAATCCAAAACCCACGATAAAAAT 60.072 34.615 0.00 0.00 0.00 1.82
6008 7883 3.895025 AGCATACACGCTTGGCAG 58.105 55.556 0.00 0.00 39.99 4.85
6038 7913 3.887716 GCCTATTCAAACCATGAGAGCAT 59.112 43.478 0.00 0.00 39.77 3.79
6073 7948 1.149174 CGGGGCGGAGGTAGTACTA 59.851 63.158 0.00 0.00 0.00 1.82
6074 7949 2.123982 CGGGGCGGAGGTAGTACT 60.124 66.667 0.00 0.00 0.00 2.73
6085 7960 0.391597 ATGACTTATACACCGGGGCG 59.608 55.000 1.73 0.00 0.00 6.13
6086 7961 2.490991 GAATGACTTATACACCGGGGC 58.509 52.381 1.73 0.00 0.00 5.80
6087 7962 2.750948 CGAATGACTTATACACCGGGG 58.249 52.381 0.00 0.00 0.00 5.73
6088 7963 2.132762 GCGAATGACTTATACACCGGG 58.867 52.381 6.32 0.00 0.00 5.73
6089 7964 1.784856 CGCGAATGACTTATACACCGG 59.215 52.381 0.00 0.00 0.00 5.28
6090 7965 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
6091 7966 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
6092 7967 5.172771 GGAACTACGCGAATGACTTATACAC 59.827 44.000 15.93 0.00 0.00 2.90
6093 7968 5.163632 TGGAACTACGCGAATGACTTATACA 60.164 40.000 15.93 0.00 0.00 2.29
6094 7969 5.276270 TGGAACTACGCGAATGACTTATAC 58.724 41.667 15.93 0.00 0.00 1.47
6095 7970 5.503662 TGGAACTACGCGAATGACTTATA 57.496 39.130 15.93 0.00 0.00 0.98
6096 7971 4.360563 CTGGAACTACGCGAATGACTTAT 58.639 43.478 15.93 0.00 0.00 1.73
6097 7972 3.428452 CCTGGAACTACGCGAATGACTTA 60.428 47.826 15.93 0.00 0.00 2.24
6098 7973 2.607187 CTGGAACTACGCGAATGACTT 58.393 47.619 15.93 0.00 0.00 3.01
6099 7974 1.135083 CCTGGAACTACGCGAATGACT 60.135 52.381 15.93 0.00 0.00 3.41
6100 7975 1.278238 CCTGGAACTACGCGAATGAC 58.722 55.000 15.93 0.44 0.00 3.06
6101 7976 0.892755 ACCTGGAACTACGCGAATGA 59.107 50.000 15.93 0.00 0.00 2.57
6102 7977 1.278238 GACCTGGAACTACGCGAATG 58.722 55.000 15.93 4.47 0.00 2.67
6103 7978 0.179145 CGACCTGGAACTACGCGAAT 60.179 55.000 15.93 0.00 0.00 3.34
6104 7979 1.210931 CGACCTGGAACTACGCGAA 59.789 57.895 15.93 0.00 0.00 4.70
6105 7980 1.672030 TCGACCTGGAACTACGCGA 60.672 57.895 15.93 0.00 0.00 5.87
6106 7981 1.513586 GTCGACCTGGAACTACGCG 60.514 63.158 3.53 3.53 0.00 6.01
6107 7982 0.038892 TTGTCGACCTGGAACTACGC 60.039 55.000 14.12 0.00 0.00 4.42
6108 7983 2.649331 ATTGTCGACCTGGAACTACG 57.351 50.000 14.12 0.00 0.00 3.51
6109 7984 5.930569 AGTTAAATTGTCGACCTGGAACTAC 59.069 40.000 14.12 2.20 0.00 2.73
6110 7985 6.105397 AGTTAAATTGTCGACCTGGAACTA 57.895 37.500 14.12 0.00 0.00 2.24
6111 7986 4.969484 AGTTAAATTGTCGACCTGGAACT 58.031 39.130 14.12 12.66 0.00 3.01
6112 7987 6.817140 AGATAGTTAAATTGTCGACCTGGAAC 59.183 38.462 14.12 10.66 0.00 3.62
6113 7988 6.942976 AGATAGTTAAATTGTCGACCTGGAA 58.057 36.000 14.12 0.10 0.00 3.53
6114 7989 6.540438 AGATAGTTAAATTGTCGACCTGGA 57.460 37.500 14.12 0.00 0.00 3.86
6115 7990 8.712285 TTTAGATAGTTAAATTGTCGACCTGG 57.288 34.615 14.12 0.00 0.00 4.45
6178 8053 9.000486 TATCACTAGATTTCTACACGGATGTAG 58.000 37.037 7.95 7.95 45.22 2.74
6179 8054 7.818997 ATCACTAGATTTCTACACGGATGTA 57.181 36.000 0.00 0.00 40.48 2.29
6180 8055 6.716934 ATCACTAGATTTCTACACGGATGT 57.283 37.500 0.00 0.00 43.30 3.06
6181 8056 9.776158 GTATATCACTAGATTTCTACACGGATG 57.224 37.037 0.00 0.00 35.67 3.51
6182 8057 9.742144 AGTATATCACTAGATTTCTACACGGAT 57.258 33.333 0.00 0.00 34.98 4.18
6183 8058 9.570468 AAGTATATCACTAGATTTCTACACGGA 57.430 33.333 0.00 0.00 36.04 4.69
6226 8101 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
6227 8102 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
6229 8104 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
6230 8105 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
6231 8106 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
6232 8107 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
6233 8108 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
6234 8109 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
6235 8110 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
6236 8111 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
6237 8112 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
6238 8113 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
6239 8114 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
6240 8115 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
6241 8116 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
6242 8117 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
6243 8118 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
6244 8119 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
6245 8120 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
6246 8121 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
6247 8122 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
6248 8123 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
6249 8124 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
6250 8125 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
6251 8126 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
6252 8127 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
6253 8128 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
6254 8129 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
6255 8130 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
6256 8131 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
6257 8132 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
6258 8133 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
6259 8134 3.312146 TCGGTGTATAAGTCATTCGCGTA 59.688 43.478 5.77 0.00 0.00 4.42
6260 8135 2.097954 TCGGTGTATAAGTCATTCGCGT 59.902 45.455 5.77 0.00 0.00 6.01
6261 8136 2.719556 CTCGGTGTATAAGTCATTCGCG 59.280 50.000 0.00 0.00 0.00 5.87
6262 8137 3.050619 CCTCGGTGTATAAGTCATTCGC 58.949 50.000 0.00 0.00 0.00 4.70
6263 8138 4.042398 CACCTCGGTGTATAAGTCATTCG 58.958 47.826 7.93 0.00 40.91 3.34
6264 8139 4.098960 TCCACCTCGGTGTATAAGTCATTC 59.901 45.833 14.51 0.00 44.02 2.67
6265 8140 4.028131 TCCACCTCGGTGTATAAGTCATT 58.972 43.478 14.51 0.00 44.02 2.57
6266 8141 3.637229 CTCCACCTCGGTGTATAAGTCAT 59.363 47.826 14.51 0.00 44.02 3.06
6267 8142 3.021695 CTCCACCTCGGTGTATAAGTCA 58.978 50.000 14.51 0.00 44.02 3.41
6268 8143 2.361438 CCTCCACCTCGGTGTATAAGTC 59.639 54.545 14.51 0.00 44.02 3.01
6269 8144 2.292061 ACCTCCACCTCGGTGTATAAGT 60.292 50.000 14.51 2.77 44.02 2.24
6270 8145 2.385803 ACCTCCACCTCGGTGTATAAG 58.614 52.381 14.51 6.68 44.02 1.73
6271 8146 2.537633 ACCTCCACCTCGGTGTATAA 57.462 50.000 14.51 0.00 44.02 0.98
6272 8147 2.511218 ACTACCTCCACCTCGGTGTATA 59.489 50.000 14.51 0.03 44.02 1.47
6273 8148 1.287146 ACTACCTCCACCTCGGTGTAT 59.713 52.381 14.51 0.63 44.02 2.29
6274 8149 0.700564 ACTACCTCCACCTCGGTGTA 59.299 55.000 14.51 0.00 44.02 2.90
6275 8150 0.700564 TACTACCTCCACCTCGGTGT 59.299 55.000 14.51 0.00 44.02 4.16
6276 8151 1.475682 GTTACTACCTCCACCTCGGTG 59.524 57.143 9.13 9.13 45.02 4.94
6277 8152 1.076024 TGTTACTACCTCCACCTCGGT 59.924 52.381 0.00 0.00 37.31 4.69
6278 8153 1.749634 CTGTTACTACCTCCACCTCGG 59.250 57.143 0.00 0.00 0.00 4.63
6279 8154 2.444421 ACTGTTACTACCTCCACCTCG 58.556 52.381 0.00 0.00 0.00 4.63
6280 8155 4.598022 ACTACTGTTACTACCTCCACCTC 58.402 47.826 0.00 0.00 0.00 3.85
6281 8156 4.671596 ACTACTGTTACTACCTCCACCT 57.328 45.455 0.00 0.00 0.00 4.00
6282 8157 4.525874 ACAACTACTGTTACTACCTCCACC 59.474 45.833 0.00 0.00 32.99 4.61
6283 8158 5.242393 TCACAACTACTGTTACTACCTCCAC 59.758 44.000 0.00 0.00 35.47 4.02
6284 8159 5.387788 TCACAACTACTGTTACTACCTCCA 58.612 41.667 0.00 0.00 35.47 3.86
6285 8160 5.972107 TCACAACTACTGTTACTACCTCC 57.028 43.478 0.00 0.00 35.47 4.30
6286 8161 9.918630 TTAATTCACAACTACTGTTACTACCTC 57.081 33.333 0.00 0.00 35.47 3.85
6287 8162 9.924650 CTTAATTCACAACTACTGTTACTACCT 57.075 33.333 0.00 0.00 35.47 3.08
6288 8163 9.702494 ACTTAATTCACAACTACTGTTACTACC 57.298 33.333 0.00 0.00 35.47 3.18
6586 8461 1.551329 GGTTGCCAGGGTTTATGGGAA 60.551 52.381 0.00 0.00 44.75 3.97
6626 8501 2.190578 GGAACTCGAGGCATGGGG 59.809 66.667 18.41 0.00 0.00 4.96
6918 8808 1.075861 CCCCTACCCCTACTCTCTAGC 59.924 61.905 0.00 0.00 0.00 3.42
7021 8919 6.457355 TCGTAATTTACAGCAACAGAAGGTA 58.543 36.000 7.31 0.00 0.00 3.08
7042 8940 1.764134 TCTTAACACCTGGTGGTTCGT 59.236 47.619 29.05 12.02 46.05 3.85
7174 9089 2.427095 GTTGTGTGGAGTTTGCTTCCTT 59.573 45.455 0.00 0.00 0.00 3.36
7347 9271 7.908193 AACGTGTGATTTGTTTTTGAGATAC 57.092 32.000 0.00 0.00 0.00 2.24
7376 9300 7.769970 TCTTTCTCAGCAACCAAATTTCATTTT 59.230 29.630 0.00 0.00 0.00 1.82
7451 9375 1.826720 CTTTGGCCGGTACACCTAGTA 59.173 52.381 1.90 0.00 0.00 1.82
7453 9377 0.743345 GCTTTGGCCGGTACACCTAG 60.743 60.000 1.90 2.08 0.00 3.02
7494 9418 2.554032 GCCAGTTTGAGTTGTACAGCAT 59.446 45.455 12.54 0.00 0.00 3.79
7497 9421 4.275689 TGAATGCCAGTTTGAGTTGTACAG 59.724 41.667 0.00 0.00 0.00 2.74
7604 9528 3.386486 GGTTGTCGACACATGTGTTCTA 58.614 45.455 31.03 17.10 45.05 2.10
7606 9530 1.263217 GGGTTGTCGACACATGTGTTC 59.737 52.381 31.03 22.77 45.05 3.18
7614 9538 4.841443 AATTTTTAGGGGTTGTCGACAC 57.159 40.909 19.90 13.28 0.00 3.67
7624 9548 8.872845 CGAATTTTGATCTGAAATTTTTAGGGG 58.127 33.333 16.28 3.83 36.96 4.79
7637 9561 8.183536 TCCATGTGTATTTCGAATTTTGATCTG 58.816 33.333 0.00 0.00 0.00 2.90
7692 9616 9.507329 AGAAGATAAAAGCAGAAATGACACTAA 57.493 29.630 0.00 0.00 0.00 2.24
7790 9715 7.411486 TTTTATTTTGCGAATCATCCCCTAA 57.589 32.000 0.00 0.00 0.00 2.69
7791 9716 7.595819 ATTTTATTTTGCGAATCATCCCCTA 57.404 32.000 0.00 0.00 0.00 3.53
7792 9717 5.930837 TTTTATTTTGCGAATCATCCCCT 57.069 34.783 0.00 0.00 0.00 4.79
7802 9727 9.757227 CATCCCCTATTTTATTTTATTTTGCGA 57.243 29.630 0.00 0.00 0.00 5.10
7803 9728 9.541143 ACATCCCCTATTTTATTTTATTTTGCG 57.459 29.630 0.00 0.00 0.00 4.85
7816 9741 9.062367 AGCATATATGTAGACATCCCCTATTTT 57.938 33.333 14.14 0.00 37.76 1.82
7817 9742 8.489489 CAGCATATATGTAGACATCCCCTATTT 58.511 37.037 14.14 0.00 37.76 1.40
7818 9743 7.625280 ACAGCATATATGTAGACATCCCCTATT 59.375 37.037 14.14 0.00 37.76 1.73
7819 9744 7.070447 CACAGCATATATGTAGACATCCCCTAT 59.930 40.741 14.14 0.00 37.76 2.57
7820 9745 6.381133 CACAGCATATATGTAGACATCCCCTA 59.619 42.308 14.14 0.00 37.76 3.53
7821 9746 5.188555 CACAGCATATATGTAGACATCCCCT 59.811 44.000 14.14 0.00 37.76 4.79
7822 9747 5.187772 TCACAGCATATATGTAGACATCCCC 59.812 44.000 14.14 0.00 37.76 4.81
7823 9748 6.286240 TCACAGCATATATGTAGACATCCC 57.714 41.667 14.14 0.00 37.76 3.85
7824 9749 7.154656 TGTTCACAGCATATATGTAGACATCC 58.845 38.462 14.14 0.00 37.76 3.51
7825 9750 8.768957 ATGTTCACAGCATATATGTAGACATC 57.231 34.615 14.14 2.54 37.76 3.06
7826 9751 7.821359 GGATGTTCACAGCATATATGTAGACAT 59.179 37.037 14.14 13.88 37.72 3.06
7827 9752 7.154656 GGATGTTCACAGCATATATGTAGACA 58.845 38.462 14.14 10.47 33.17 3.41
7828 9753 7.154656 TGGATGTTCACAGCATATATGTAGAC 58.845 38.462 14.14 5.92 33.17 2.59
7829 9754 7.301868 TGGATGTTCACAGCATATATGTAGA 57.698 36.000 14.14 4.86 33.17 2.59
7830 9755 7.820872 TCATGGATGTTCACAGCATATATGTAG 59.179 37.037 14.14 9.30 33.17 2.74
7831 9756 7.678837 TCATGGATGTTCACAGCATATATGTA 58.321 34.615 14.14 0.00 33.17 2.29
7832 9757 6.536447 TCATGGATGTTCACAGCATATATGT 58.464 36.000 14.14 0.00 33.17 2.29
7833 9758 7.625828 ATCATGGATGTTCACAGCATATATG 57.374 36.000 8.45 8.45 33.17 1.78
7834 9759 8.520351 CAAATCATGGATGTTCACAGCATATAT 58.480 33.333 0.00 0.00 33.17 0.86
7835 9760 7.503230 ACAAATCATGGATGTTCACAGCATATA 59.497 33.333 0.00 0.00 33.17 0.86
7836 9761 6.322969 ACAAATCATGGATGTTCACAGCATAT 59.677 34.615 0.00 0.00 33.17 1.78
7837 9762 5.653330 ACAAATCATGGATGTTCACAGCATA 59.347 36.000 0.00 0.00 33.17 3.14
7838 9763 4.464951 ACAAATCATGGATGTTCACAGCAT 59.535 37.500 0.00 0.00 33.17 3.79
7839 9764 3.827876 ACAAATCATGGATGTTCACAGCA 59.172 39.130 0.00 0.00 33.17 4.41
7840 9765 4.445452 ACAAATCATGGATGTTCACAGC 57.555 40.909 0.00 0.00 0.00 4.40
7841 9766 5.570206 CGAAACAAATCATGGATGTTCACAG 59.430 40.000 10.63 2.61 36.33 3.66
7842 9767 5.459768 CGAAACAAATCATGGATGTTCACA 58.540 37.500 10.63 0.00 36.33 3.58
7843 9768 4.858692 CCGAAACAAATCATGGATGTTCAC 59.141 41.667 10.63 8.23 36.33 3.18
7844 9769 4.764308 TCCGAAACAAATCATGGATGTTCA 59.236 37.500 10.63 0.00 36.33 3.18
7845 9770 5.309323 TCCGAAACAAATCATGGATGTTC 57.691 39.130 10.63 5.81 36.33 3.18
7846 9771 5.720371 TTCCGAAACAAATCATGGATGTT 57.280 34.783 0.00 0.00 38.85 2.71
7847 9772 5.920193 ATTCCGAAACAAATCATGGATGT 57.080 34.783 0.00 0.00 0.00 3.06
7848 9773 7.599630 AAAATTCCGAAACAAATCATGGATG 57.400 32.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.