Multiple sequence alignment - TraesCS5D01G102000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G102000 chr5D 100.000 8859 0 0 1 8859 114904464 114895606 0.000000e+00 16360.0
1 TraesCS5D01G102000 chr5D 94.966 894 41 4 119 1008 413675797 413676690 0.000000e+00 1399.0
2 TraesCS5D01G102000 chr5D 94.754 896 40 5 119 1008 510557496 510558390 0.000000e+00 1387.0
3 TraesCS5D01G102000 chr5D 77.903 1240 176 43 6235 7416 115022220 115021021 0.000000e+00 682.0
4 TraesCS5D01G102000 chr5D 81.503 865 117 25 4787 5624 115023497 115022649 0.000000e+00 671.0
5 TraesCS5D01G102000 chr5D 83.154 279 35 6 5847 6125 114898172 114897906 2.470000e-60 244.0
6 TraesCS5D01G102000 chr5D 83.154 279 35 6 6293 6559 114898618 114898340 2.470000e-60 244.0
7 TraesCS5D01G102000 chr5D 88.961 154 10 4 3881 4032 42065269 42065417 5.460000e-42 183.0
8 TraesCS5D01G102000 chr5D 86.792 159 18 2 3876 4032 91653961 91654118 3.290000e-39 174.0
9 TraesCS5D01G102000 chr5D 86.061 165 16 4 3873 4032 240087543 240087705 4.250000e-38 171.0
10 TraesCS5D01G102000 chr5B 97.815 5539 77 16 3359 8859 126251356 126245824 0.000000e+00 9518.0
11 TraesCS5D01G102000 chr5B 94.749 895 43 4 119 1010 629689047 629689940 0.000000e+00 1389.0
12 TraesCS5D01G102000 chr5B 93.984 881 12 9 2491 3359 126253026 126252175 0.000000e+00 1295.0
13 TraesCS5D01G102000 chr5B 81.456 879 120 23 4764 5615 126296838 126295976 0.000000e+00 680.0
14 TraesCS5D01G102000 chr5B 76.418 1234 198 46 6235 7416 126295533 126294341 1.660000e-161 580.0
15 TraesCS5D01G102000 chr5B 93.464 306 10 5 2127 2424 126253351 126253048 6.310000e-121 446.0
16 TraesCS5D01G102000 chr5B 92.739 303 11 4 1086 1381 126254102 126253804 2.290000e-115 427.0
17 TraesCS5D01G102000 chr5B 92.453 265 4 6 1401 1665 126253819 126253571 1.820000e-96 364.0
18 TraesCS5D01G102000 chr5B 97.073 205 5 1 1840 2043 126253551 126253347 2.370000e-90 344.0
19 TraesCS5D01G102000 chr5B 82.730 359 50 6 6213 6559 126248912 126248554 8.640000e-80 309.0
20 TraesCS5D01G102000 chr5A 96.163 2033 47 19 4461 6468 120759368 120757342 0.000000e+00 3293.0
21 TraesCS5D01G102000 chr5A 97.072 1947 50 5 6915 8859 120753903 120751962 0.000000e+00 3273.0
22 TraesCS5D01G102000 chr5A 94.492 944 36 6 3336 4263 120781444 120780501 0.000000e+00 1441.0
23 TraesCS5D01G102000 chr5A 95.440 636 18 6 1084 1711 120783500 120782868 0.000000e+00 1003.0
24 TraesCS5D01G102000 chr5A 94.453 649 26 9 2712 3352 120782103 120781457 0.000000e+00 990.0
25 TraesCS5D01G102000 chr5A 87.734 693 57 16 1840 2531 120782871 120782206 0.000000e+00 784.0
26 TraesCS5D01G102000 chr5A 96.544 463 15 1 6465 6927 120754762 120754301 0.000000e+00 765.0
27 TraesCS5D01G102000 chr5A 77.917 1200 156 46 6240 7381 121114490 121113342 0.000000e+00 647.0
28 TraesCS5D01G102000 chr5A 78.216 1065 170 35 4764 5779 121115808 121114757 7.550000e-175 625.0
29 TraesCS5D01G102000 chr5A 98.086 209 4 0 4259 4467 120764831 120764623 1.820000e-96 364.0
30 TraesCS5D01G102000 chr5A 82.730 359 44 7 6213 6559 120758037 120757685 4.020000e-78 303.0
31 TraesCS5D01G102000 chr5A 90.909 132 5 4 2577 2707 120782203 120782078 4.250000e-38 171.0
32 TraesCS5D01G102000 chr5A 90.526 95 9 0 6031 6125 120754762 120754668 9.340000e-25 126.0
33 TraesCS5D01G102000 chr3D 95.078 894 40 4 119 1008 603318265 603319158 0.000000e+00 1404.0
34 TraesCS5D01G102000 chr4A 95.073 893 41 3 119 1008 652092483 652091591 0.000000e+00 1402.0
35 TraesCS5D01G102000 chr4A 94.743 894 41 5 119 1008 724796417 724797308 0.000000e+00 1386.0
36 TraesCS5D01G102000 chr4A 87.261 157 16 3 3879 4032 677936820 677936665 9.140000e-40 176.0
37 TraesCS5D01G102000 chr2D 94.860 895 43 3 119 1010 102291538 102292432 0.000000e+00 1395.0
38 TraesCS5D01G102000 chr2D 88.535 157 15 2 3882 4036 533659846 533660001 4.220000e-43 187.0
39 TraesCS5D01G102000 chr2D 88.321 137 12 4 1709 1843 590418190 590418056 2.560000e-35 161.0
40 TraesCS5D01G102000 chr1B 94.549 899 42 6 119 1013 47511140 47512035 0.000000e+00 1382.0
41 TraesCS5D01G102000 chr1D 94.254 905 47 5 109 1008 58117575 58118479 0.000000e+00 1378.0
42 TraesCS5D01G102000 chr1D 86.624 157 15 5 3882 4032 459929533 459929377 1.530000e-37 169.0
43 TraesCS5D01G102000 chr4D 93.846 130 6 2 1710 1838 39258590 39258462 2.520000e-45 195.0
44 TraesCS5D01G102000 chr4D 87.368 95 5 3 1715 1809 461216458 461216371 1.570000e-17 102.0
45 TraesCS5D01G102000 chr6A 92.537 134 8 2 1709 1841 47486301 47486169 3.260000e-44 191.0
46 TraesCS5D01G102000 chr7B 88.961 154 12 5 1697 1848 504811630 504811780 1.520000e-42 185.0
47 TraesCS5D01G102000 chr7A 85.876 177 14 6 3873 4042 277729860 277730032 2.540000e-40 178.0
48 TraesCS5D01G102000 chr7A 82.927 82 13 1 2395 2475 245937500 245937419 1.230000e-08 73.1
49 TraesCS5D01G102000 chr6B 90.441 136 11 2 1708 1842 579547905 579548039 2.540000e-40 178.0
50 TraesCS5D01G102000 chr6B 100.000 30 0 0 2496 2525 604221899 604221870 1.000000e-03 56.5
51 TraesCS5D01G102000 chr7D 86.885 61 6 2 2465 2524 214120590 214120649 5.740000e-07 67.6
52 TraesCS5D01G102000 chr2B 100.000 30 0 0 1040 1069 687612512 687612483 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G102000 chr5D 114895606 114904464 8858 True 16360.000000 16360 100.0000 1 8859 1 chr5D.!!$R1 8858
1 TraesCS5D01G102000 chr5D 413675797 413676690 893 False 1399.000000 1399 94.9660 119 1008 1 chr5D.!!$F4 889
2 TraesCS5D01G102000 chr5D 510557496 510558390 894 False 1387.000000 1387 94.7540 119 1008 1 chr5D.!!$F5 889
3 TraesCS5D01G102000 chr5D 115021021 115023497 2476 True 676.500000 682 79.7030 4787 7416 2 chr5D.!!$R3 2629
4 TraesCS5D01G102000 chr5D 114897906 114898618 712 True 244.000000 244 83.1540 5847 6559 2 chr5D.!!$R2 712
5 TraesCS5D01G102000 chr5B 126245824 126254102 8278 True 1814.714286 9518 92.8940 1086 8859 7 chr5B.!!$R1 7773
6 TraesCS5D01G102000 chr5B 629689047 629689940 893 False 1389.000000 1389 94.7490 119 1010 1 chr5B.!!$F1 891
7 TraesCS5D01G102000 chr5B 126294341 126296838 2497 True 630.000000 680 78.9370 4764 7416 2 chr5B.!!$R2 2652
8 TraesCS5D01G102000 chr5A 120751962 120759368 7406 True 1552.000000 3293 92.6070 4461 8859 5 chr5A.!!$R2 4398
9 TraesCS5D01G102000 chr5A 120780501 120783500 2999 True 877.800000 1441 92.6056 1084 4263 5 chr5A.!!$R3 3179
10 TraesCS5D01G102000 chr5A 121113342 121115808 2466 True 636.000000 647 78.0665 4764 7381 2 chr5A.!!$R4 2617
11 TraesCS5D01G102000 chr3D 603318265 603319158 893 False 1404.000000 1404 95.0780 119 1008 1 chr3D.!!$F1 889
12 TraesCS5D01G102000 chr4A 652091591 652092483 892 True 1402.000000 1402 95.0730 119 1008 1 chr4A.!!$R1 889
13 TraesCS5D01G102000 chr4A 724796417 724797308 891 False 1386.000000 1386 94.7430 119 1008 1 chr4A.!!$F1 889
14 TraesCS5D01G102000 chr2D 102291538 102292432 894 False 1395.000000 1395 94.8600 119 1010 1 chr2D.!!$F1 891
15 TraesCS5D01G102000 chr1B 47511140 47512035 895 False 1382.000000 1382 94.5490 119 1013 1 chr1B.!!$F1 894
16 TraesCS5D01G102000 chr1D 58117575 58118479 904 False 1378.000000 1378 94.2540 109 1008 1 chr1D.!!$F1 899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.036875 CTCCCTCCGTCCAAAAAGCT 59.963 55.000 0.00 0.00 0.00 3.74 F
1035 1044 0.037232 GGCTAGCGTGAGTTCAGGTT 60.037 55.000 9.00 0.82 34.50 3.50 F
1760 1783 0.036577 CTTCACTCAGGAGCTGGTGG 60.037 60.000 0.00 0.00 35.20 4.61 F
1837 1860 0.108041 TGGTAGGATTTCGAACGGCC 60.108 55.000 0.00 0.00 0.00 6.13 F
1838 1861 0.812811 GGTAGGATTTCGAACGGCCC 60.813 60.000 0.00 0.00 0.00 5.80 F
2482 2514 1.140312 TGCCCAAGAAAGTGACCTCT 58.860 50.000 0.00 0.00 0.00 3.69 F
2488 2520 1.187087 AGAAAGTGACCTCTAGCGGG 58.813 55.000 3.31 1.93 0.00 6.13 F
3522 4422 1.564348 TCCCCCTTATTCTGTTCCTGC 59.436 52.381 0.00 0.00 0.00 4.85 F
5306 6228 2.749621 GTGGGAGCAAGAGTTTGTATGG 59.250 50.000 0.00 0.00 36.65 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1764 0.036577 CCACCAGCTCCTGAGTGAAG 60.037 60.000 12.37 0.0 35.92 3.02 R
2752 2784 0.321346 CAAATGTCCAACAAGCCCCC 59.679 55.000 0.00 0.0 0.00 5.40 R
3522 4422 1.915141 AAGGGTCAAATCAGCCACAG 58.085 50.000 0.00 0.0 36.28 3.66 R
4032 4944 0.680921 TGCCCTACTGCCTTTGATGC 60.681 55.000 0.00 0.0 0.00 3.91 R
4920 5842 1.302511 AGGCGAATGTTGGCGTTCT 60.303 52.632 0.00 0.0 38.22 3.01 R
5306 6228 0.234884 CGAACACCAGTCTTTTCGCC 59.765 55.000 0.00 0.0 34.96 5.54 R
5506 6465 1.072489 TGGTAAGTTCCATCGTTGGCA 59.928 47.619 7.70 0.0 43.29 4.92 R
6603 10448 3.521560 TGAGCATATTCAAGTCACCGAC 58.478 45.455 0.00 0.0 0.00 4.79 R
8021 12306 0.826062 GCAGTGCCATAATTTGCCCT 59.174 50.000 2.85 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.671854 CGGTATACGTGCATGCACA 58.328 52.632 40.95 28.04 46.47 4.57
31 32 0.300491 CGGTATACGTGCATGCACAC 59.700 55.000 40.95 32.09 46.47 3.82
32 33 1.364721 GGTATACGTGCATGCACACA 58.635 50.000 40.95 30.62 46.47 3.72
33 34 1.939934 GGTATACGTGCATGCACACAT 59.060 47.619 40.95 33.67 46.47 3.21
34 35 2.354510 GGTATACGTGCATGCACACATT 59.645 45.455 40.95 27.14 46.47 2.71
35 36 3.181501 GGTATACGTGCATGCACACATTT 60.182 43.478 40.95 25.62 46.47 2.32
36 37 4.034626 GGTATACGTGCATGCACACATTTA 59.965 41.667 40.95 25.91 46.47 1.40
37 38 4.898829 ATACGTGCATGCACACATTTAT 57.101 36.364 40.95 26.71 46.47 1.40
38 39 6.073494 GGTATACGTGCATGCACACATTTATA 60.073 38.462 40.95 28.38 46.47 0.98
39 40 4.277257 ACGTGCATGCACACATTTATAG 57.723 40.909 40.95 26.82 46.47 1.31
40 41 3.938334 ACGTGCATGCACACATTTATAGA 59.062 39.130 40.95 6.53 46.47 1.98
41 42 4.394610 ACGTGCATGCACACATTTATAGAA 59.605 37.500 40.95 6.06 46.47 2.10
42 43 5.106357 ACGTGCATGCACACATTTATAGAAA 60.106 36.000 40.95 5.38 46.47 2.52
43 44 5.972973 CGTGCATGCACACATTTATAGAAAT 59.027 36.000 40.95 0.00 46.47 2.17
44 45 7.131565 CGTGCATGCACACATTTATAGAAATA 58.868 34.615 40.95 4.62 46.47 1.40
45 46 7.643371 CGTGCATGCACACATTTATAGAAATAA 59.357 33.333 40.95 4.28 46.47 1.40
46 47 8.961092 GTGCATGCACACATTTATAGAAATAAG 58.039 33.333 39.12 0.00 45.53 1.73
47 48 8.685427 TGCATGCACACATTTATAGAAATAAGT 58.315 29.630 18.46 0.00 33.33 2.24
57 58 9.640963 CATTTATAGAAATAAGTACTCCCTCCG 57.359 37.037 0.00 0.00 33.33 4.63
58 59 8.773033 TTTATAGAAATAAGTACTCCCTCCGT 57.227 34.615 0.00 0.00 0.00 4.69
59 60 6.897706 ATAGAAATAAGTACTCCCTCCGTC 57.102 41.667 0.00 0.00 0.00 4.79
60 61 3.959449 AGAAATAAGTACTCCCTCCGTCC 59.041 47.826 0.00 0.00 0.00 4.79
61 62 3.393426 AATAAGTACTCCCTCCGTCCA 57.607 47.619 0.00 0.00 0.00 4.02
62 63 2.905415 TAAGTACTCCCTCCGTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
63 64 2.019807 AAGTACTCCCTCCGTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
64 65 2.019807 AGTACTCCCTCCGTCCAAAA 57.980 50.000 0.00 0.00 0.00 2.44
65 66 2.332117 AGTACTCCCTCCGTCCAAAAA 58.668 47.619 0.00 0.00 0.00 1.94
66 67 2.302157 AGTACTCCCTCCGTCCAAAAAG 59.698 50.000 0.00 0.00 0.00 2.27
67 68 0.250770 ACTCCCTCCGTCCAAAAAGC 60.251 55.000 0.00 0.00 0.00 3.51
68 69 0.036875 CTCCCTCCGTCCAAAAAGCT 59.963 55.000 0.00 0.00 0.00 3.74
69 70 0.250727 TCCCTCCGTCCAAAAAGCTG 60.251 55.000 0.00 0.00 0.00 4.24
70 71 1.244019 CCCTCCGTCCAAAAAGCTGG 61.244 60.000 0.00 0.00 37.87 4.85
71 72 0.537371 CCTCCGTCCAAAAAGCTGGT 60.537 55.000 0.00 0.00 37.74 4.00
72 73 0.875059 CTCCGTCCAAAAAGCTGGTC 59.125 55.000 0.00 0.00 37.74 4.02
73 74 0.536460 TCCGTCCAAAAAGCTGGTCC 60.536 55.000 0.00 0.00 37.74 4.46
74 75 0.537371 CCGTCCAAAAAGCTGGTCCT 60.537 55.000 0.00 0.00 37.74 3.85
75 76 1.318576 CGTCCAAAAAGCTGGTCCTT 58.681 50.000 0.00 0.00 37.74 3.36
76 77 1.266989 CGTCCAAAAAGCTGGTCCTTC 59.733 52.381 0.00 0.00 37.74 3.46
77 78 1.266989 GTCCAAAAAGCTGGTCCTTCG 59.733 52.381 0.00 0.00 37.74 3.79
78 79 1.142060 TCCAAAAAGCTGGTCCTTCGA 59.858 47.619 0.00 0.00 37.74 3.71
79 80 1.953686 CCAAAAAGCTGGTCCTTCGAA 59.046 47.619 0.00 0.00 0.00 3.71
80 81 2.558359 CCAAAAAGCTGGTCCTTCGAAT 59.442 45.455 0.00 0.00 0.00 3.34
81 82 3.568538 CAAAAAGCTGGTCCTTCGAATG 58.431 45.455 0.00 0.00 0.00 2.67
82 83 2.859165 AAAGCTGGTCCTTCGAATGA 57.141 45.000 0.00 0.00 0.00 2.57
83 84 2.859165 AAGCTGGTCCTTCGAATGAA 57.141 45.000 4.61 0.00 0.00 2.57
84 85 3.356529 AAGCTGGTCCTTCGAATGAAT 57.643 42.857 4.61 0.00 32.61 2.57
85 86 2.636830 AGCTGGTCCTTCGAATGAATG 58.363 47.619 4.61 0.52 32.61 2.67
86 87 2.026822 AGCTGGTCCTTCGAATGAATGT 60.027 45.455 4.61 0.00 32.61 2.71
87 88 3.197766 AGCTGGTCCTTCGAATGAATGTA 59.802 43.478 4.61 0.00 32.61 2.29
88 89 4.130118 GCTGGTCCTTCGAATGAATGTAT 58.870 43.478 4.61 0.00 32.61 2.29
89 90 4.576463 GCTGGTCCTTCGAATGAATGTATT 59.424 41.667 4.61 0.00 32.61 1.89
90 91 5.066505 GCTGGTCCTTCGAATGAATGTATTT 59.933 40.000 4.61 0.00 32.61 1.40
91 92 6.260050 GCTGGTCCTTCGAATGAATGTATTTA 59.740 38.462 4.61 0.00 32.61 1.40
92 93 7.201696 GCTGGTCCTTCGAATGAATGTATTTAA 60.202 37.037 4.61 0.00 32.61 1.52
93 94 7.981142 TGGTCCTTCGAATGAATGTATTTAAC 58.019 34.615 4.61 0.00 32.61 2.01
94 95 7.608376 TGGTCCTTCGAATGAATGTATTTAACA 59.392 33.333 4.61 0.00 43.86 2.41
95 96 7.908601 GGTCCTTCGAATGAATGTATTTAACAC 59.091 37.037 4.61 0.00 42.09 3.32
96 97 7.908601 GTCCTTCGAATGAATGTATTTAACACC 59.091 37.037 4.61 0.00 42.09 4.16
97 98 7.608376 TCCTTCGAATGAATGTATTTAACACCA 59.392 33.333 0.00 0.00 42.09 4.17
98 99 8.240682 CCTTCGAATGAATGTATTTAACACCAA 58.759 33.333 0.00 0.00 42.09 3.67
99 100 9.619316 CTTCGAATGAATGTATTTAACACCAAA 57.381 29.630 0.00 0.00 42.09 3.28
106 107 9.632807 TGAATGTATTTAACACCAAATTAGTGC 57.367 29.630 8.14 0.00 42.09 4.40
107 108 9.855021 GAATGTATTTAACACCAAATTAGTGCT 57.145 29.630 8.14 0.25 42.09 4.40
110 111 9.727859 TGTATTTAACACCAAATTAGTGCTAGA 57.272 29.630 8.14 0.00 38.87 2.43
114 115 9.727859 TTTAACACCAAATTAGTGCTAGATACA 57.272 29.630 8.14 0.00 38.87 2.29
115 116 9.899661 TTAACACCAAATTAGTGCTAGATACAT 57.100 29.630 8.14 0.00 38.87 2.29
116 117 8.438676 AACACCAAATTAGTGCTAGATACATC 57.561 34.615 8.14 0.00 38.87 3.06
117 118 7.564793 ACACCAAATTAGTGCTAGATACATCA 58.435 34.615 8.14 0.00 38.87 3.07
245 248 0.109723 TAACAGCGCCTGTCCCTTTT 59.890 50.000 2.29 0.00 44.62 2.27
250 253 0.606673 GCGCCTGTCCCTTTTCTTCT 60.607 55.000 0.00 0.00 0.00 2.85
259 262 3.050089 TCCCTTTTCTTCTACACCACCA 58.950 45.455 0.00 0.00 0.00 4.17
348 351 1.071699 TCAGCAGCTTTACGGACCTTT 59.928 47.619 0.00 0.00 0.00 3.11
475 478 0.240411 CGACGTCGGAGAAGGAAACT 59.760 55.000 29.70 0.00 41.22 2.66
535 539 0.615331 TCCATCTTCCAGCTGTCACC 59.385 55.000 13.81 0.00 0.00 4.02
547 551 1.673033 GCTGTCACCTGCGTAGACAAT 60.673 52.381 0.53 0.00 41.27 2.71
569 573 1.805945 CTGCGCGTACTCCTGAACC 60.806 63.158 8.43 0.00 0.00 3.62
580 584 2.509964 ACTCCTGAACCACAAAACCTCT 59.490 45.455 0.00 0.00 0.00 3.69
601 605 2.184322 CTCCACCATGACGTCGGG 59.816 66.667 20.80 20.80 0.00 5.14
607 611 1.220749 CCATGACGTCGGGGACAAT 59.779 57.895 17.76 0.00 32.09 2.71
695 699 4.017591 TCAACACCATCCATGAACCCTAAT 60.018 41.667 0.00 0.00 0.00 1.73
765 769 2.047274 CGCCATGAAGGACACCGT 60.047 61.111 0.00 0.00 41.22 4.83
827 831 3.897122 GCTCCCACCACCCCAACA 61.897 66.667 0.00 0.00 0.00 3.33
879 883 2.488771 TACAGAGCGGAGGAACGGGA 62.489 60.000 0.00 0.00 0.00 5.14
895 900 1.629297 GGATCCCCCTCTCTCCTGT 59.371 63.158 0.00 0.00 0.00 4.00
1010 1019 0.540454 GCGGCTAGGGTAGGAAAACT 59.460 55.000 0.00 0.00 0.00 2.66
1011 1020 1.472904 GCGGCTAGGGTAGGAAAACTC 60.473 57.143 0.00 0.00 0.00 3.01
1012 1021 2.108970 CGGCTAGGGTAGGAAAACTCT 58.891 52.381 0.00 0.00 33.73 3.24
1014 1023 3.679083 CGGCTAGGGTAGGAAAACTCTTG 60.679 52.174 0.00 0.00 31.02 3.02
1015 1024 3.518303 GGCTAGGGTAGGAAAACTCTTGA 59.482 47.826 0.00 0.00 31.02 3.02
1016 1025 4.383226 GGCTAGGGTAGGAAAACTCTTGAG 60.383 50.000 0.00 0.00 31.02 3.02
1017 1026 4.383226 GCTAGGGTAGGAAAACTCTTGAGG 60.383 50.000 2.55 0.00 31.02 3.86
1018 1027 2.306219 AGGGTAGGAAAACTCTTGAGGC 59.694 50.000 2.55 0.00 0.00 4.70
1019 1028 2.306219 GGGTAGGAAAACTCTTGAGGCT 59.694 50.000 2.55 0.00 0.00 4.58
1020 1029 3.518303 GGGTAGGAAAACTCTTGAGGCTA 59.482 47.826 2.55 0.00 0.00 3.93
1021 1030 4.383226 GGGTAGGAAAACTCTTGAGGCTAG 60.383 50.000 2.55 0.00 0.00 3.42
1022 1031 3.342377 AGGAAAACTCTTGAGGCTAGC 57.658 47.619 6.04 6.04 0.00 3.42
1023 1032 2.003301 GGAAAACTCTTGAGGCTAGCG 58.997 52.381 9.00 0.00 0.00 4.26
1024 1033 2.613223 GGAAAACTCTTGAGGCTAGCGT 60.613 50.000 10.22 10.22 0.00 5.07
1025 1034 2.086054 AAACTCTTGAGGCTAGCGTG 57.914 50.000 15.88 2.26 0.00 5.34
1026 1035 1.257743 AACTCTTGAGGCTAGCGTGA 58.742 50.000 15.88 2.89 0.00 4.35
1027 1036 0.814457 ACTCTTGAGGCTAGCGTGAG 59.186 55.000 15.88 16.65 0.00 3.51
1028 1037 0.814457 CTCTTGAGGCTAGCGTGAGT 59.186 55.000 15.88 0.00 0.00 3.41
1029 1038 1.203523 CTCTTGAGGCTAGCGTGAGTT 59.796 52.381 15.88 0.00 0.00 3.01
1030 1039 1.202582 TCTTGAGGCTAGCGTGAGTTC 59.797 52.381 15.88 0.07 0.00 3.01
1031 1040 0.966179 TTGAGGCTAGCGTGAGTTCA 59.034 50.000 15.88 3.02 0.00 3.18
1032 1041 0.528017 TGAGGCTAGCGTGAGTTCAG 59.472 55.000 15.88 0.00 0.00 3.02
1033 1042 0.179124 GAGGCTAGCGTGAGTTCAGG 60.179 60.000 15.88 0.00 35.07 3.86
1034 1043 0.900647 AGGCTAGCGTGAGTTCAGGT 60.901 55.000 9.56 0.00 34.50 4.00
1035 1044 0.037232 GGCTAGCGTGAGTTCAGGTT 60.037 55.000 9.00 0.82 34.50 3.50
1036 1045 1.608283 GGCTAGCGTGAGTTCAGGTTT 60.608 52.381 9.00 0.00 34.50 3.27
1037 1046 1.461127 GCTAGCGTGAGTTCAGGTTTG 59.539 52.381 0.00 0.93 34.50 2.93
1038 1047 2.866460 GCTAGCGTGAGTTCAGGTTTGA 60.866 50.000 0.00 0.00 34.50 2.69
1039 1048 2.550830 AGCGTGAGTTCAGGTTTGAT 57.449 45.000 4.05 0.00 34.50 2.57
1040 1049 3.678056 AGCGTGAGTTCAGGTTTGATA 57.322 42.857 4.05 0.00 34.50 2.15
1041 1050 3.589988 AGCGTGAGTTCAGGTTTGATAG 58.410 45.455 4.05 0.00 34.50 2.08
1042 1051 3.258372 AGCGTGAGTTCAGGTTTGATAGA 59.742 43.478 4.05 0.00 34.50 1.98
1043 1052 4.081420 AGCGTGAGTTCAGGTTTGATAGAT 60.081 41.667 4.05 0.00 34.50 1.98
1044 1053 5.127194 AGCGTGAGTTCAGGTTTGATAGATA 59.873 40.000 4.05 0.00 34.50 1.98
1045 1054 5.232414 GCGTGAGTTCAGGTTTGATAGATAC 59.768 44.000 4.05 0.00 34.50 2.24
1046 1055 6.330278 CGTGAGTTCAGGTTTGATAGATACA 58.670 40.000 0.00 0.00 32.27 2.29
1047 1056 6.980978 CGTGAGTTCAGGTTTGATAGATACAT 59.019 38.462 0.00 0.00 32.27 2.29
1048 1057 7.168302 CGTGAGTTCAGGTTTGATAGATACATC 59.832 40.741 0.00 0.00 32.27 3.06
1049 1058 7.439655 GTGAGTTCAGGTTTGATAGATACATCC 59.560 40.741 0.00 0.00 32.27 3.51
1050 1059 7.125659 TGAGTTCAGGTTTGATAGATACATCCA 59.874 37.037 0.00 0.00 32.27 3.41
1051 1060 8.038862 AGTTCAGGTTTGATAGATACATCCAT 57.961 34.615 0.00 0.00 32.27 3.41
1052 1061 8.497745 AGTTCAGGTTTGATAGATACATCCATT 58.502 33.333 0.00 0.00 32.27 3.16
1053 1062 9.125026 GTTCAGGTTTGATAGATACATCCATTT 57.875 33.333 0.00 0.00 32.27 2.32
1054 1063 8.681486 TCAGGTTTGATAGATACATCCATTTG 57.319 34.615 0.00 0.00 0.00 2.32
1055 1064 8.493607 TCAGGTTTGATAGATACATCCATTTGA 58.506 33.333 0.00 0.00 0.00 2.69
1056 1065 8.781196 CAGGTTTGATAGATACATCCATTTGAG 58.219 37.037 0.00 0.00 0.00 3.02
1057 1066 8.717717 AGGTTTGATAGATACATCCATTTGAGA 58.282 33.333 0.00 0.00 0.00 3.27
1058 1067 8.778358 GGTTTGATAGATACATCCATTTGAGAC 58.222 37.037 0.00 0.00 0.00 3.36
1059 1068 9.330063 GTTTGATAGATACATCCATTTGAGACA 57.670 33.333 0.00 0.00 0.00 3.41
1060 1069 9.904198 TTTGATAGATACATCCATTTGAGACAA 57.096 29.630 0.00 0.00 0.00 3.18
1061 1070 9.551734 TTGATAGATACATCCATTTGAGACAAG 57.448 33.333 0.00 0.00 0.00 3.16
1062 1071 8.708378 TGATAGATACATCCATTTGAGACAAGT 58.292 33.333 0.00 0.00 0.00 3.16
1063 1072 9.553064 GATAGATACATCCATTTGAGACAAGTT 57.447 33.333 0.00 0.00 0.00 2.66
1064 1073 9.911788 ATAGATACATCCATTTGAGACAAGTTT 57.088 29.630 0.00 0.00 0.00 2.66
1065 1074 8.641498 AGATACATCCATTTGAGACAAGTTTT 57.359 30.769 0.00 0.00 0.00 2.43
1066 1075 9.082313 AGATACATCCATTTGAGACAAGTTTTT 57.918 29.630 0.00 0.00 0.00 1.94
1080 1089 4.659480 TTTTTCGGACGGACGGAG 57.341 55.556 0.00 0.00 0.00 4.63
1081 1090 1.005867 TTTTTCGGACGGACGGAGG 60.006 57.895 0.00 0.00 0.00 4.30
1082 1091 2.438951 TTTTTCGGACGGACGGAGGG 62.439 60.000 0.00 0.00 0.00 4.30
1088 1097 0.886563 GGACGGACGGAGGGTATATG 59.113 60.000 0.00 0.00 0.00 1.78
1090 1099 1.268899 GACGGACGGAGGGTATATGTG 59.731 57.143 0.00 0.00 0.00 3.21
1176 1186 0.698818 AGATTCCTTGCCCTTTCCGT 59.301 50.000 0.00 0.00 0.00 4.69
1277 1287 2.094854 GCCTATATAACCGGACCAGACG 60.095 54.545 9.46 0.00 0.00 4.18
1284 1294 4.056125 CGGACCAGACGCTGCAGA 62.056 66.667 20.43 0.00 0.00 4.26
1297 1307 1.146707 TGCAGACAAGAGCAGCACA 59.853 52.632 0.00 0.00 35.51 4.57
1680 1703 7.044798 GTCTGCACCTCTGTTTCTAGATATTT 58.955 38.462 0.00 0.00 0.00 1.40
1681 1704 7.010923 GTCTGCACCTCTGTTTCTAGATATTTG 59.989 40.741 0.00 0.00 0.00 2.32
1712 1735 9.712305 TTGAACTTCTGTTTCTAGATTCTTAGG 57.288 33.333 0.00 0.00 36.39 2.69
1713 1736 7.819900 TGAACTTCTGTTTCTAGATTCTTAGGC 59.180 37.037 0.00 0.00 36.39 3.93
1714 1737 6.645306 ACTTCTGTTTCTAGATTCTTAGGCC 58.355 40.000 0.00 0.00 0.00 5.19
1715 1738 5.615925 TCTGTTTCTAGATTCTTAGGCCC 57.384 43.478 0.00 0.00 0.00 5.80
1716 1739 5.281314 TCTGTTTCTAGATTCTTAGGCCCT 58.719 41.667 0.00 0.00 0.00 5.19
1717 1740 5.129485 TCTGTTTCTAGATTCTTAGGCCCTG 59.871 44.000 0.00 0.00 0.00 4.45
1718 1741 4.783227 TGTTTCTAGATTCTTAGGCCCTGT 59.217 41.667 0.00 0.00 0.00 4.00
1719 1742 5.250774 TGTTTCTAGATTCTTAGGCCCTGTT 59.749 40.000 0.00 0.00 0.00 3.16
1720 1743 5.359194 TTCTAGATTCTTAGGCCCTGTTG 57.641 43.478 0.00 0.00 0.00 3.33
1721 1744 3.711704 TCTAGATTCTTAGGCCCTGTTGG 59.288 47.826 0.00 0.00 37.09 3.77
1740 1763 3.699894 AGGCACTCCGCTCCACAG 61.700 66.667 0.00 0.00 41.91 3.66
1742 1765 4.385405 GCACTCCGCTCCACAGCT 62.385 66.667 0.00 0.00 44.40 4.24
1743 1766 2.345244 CACTCCGCTCCACAGCTT 59.655 61.111 0.00 0.00 44.40 3.74
1744 1767 1.739562 CACTCCGCTCCACAGCTTC 60.740 63.158 0.00 0.00 44.40 3.86
1745 1768 2.210013 ACTCCGCTCCACAGCTTCA 61.210 57.895 0.00 0.00 44.40 3.02
1746 1769 1.739562 CTCCGCTCCACAGCTTCAC 60.740 63.158 0.00 0.00 44.40 3.18
1747 1770 2.164865 CTCCGCTCCACAGCTTCACT 62.165 60.000 0.00 0.00 44.40 3.41
1748 1771 1.739562 CCGCTCCACAGCTTCACTC 60.740 63.158 0.00 0.00 44.40 3.51
1749 1772 1.005748 CGCTCCACAGCTTCACTCA 60.006 57.895 0.00 0.00 44.40 3.41
1750 1773 1.013005 CGCTCCACAGCTTCACTCAG 61.013 60.000 0.00 0.00 44.40 3.35
1751 1774 0.673022 GCTCCACAGCTTCACTCAGG 60.673 60.000 0.00 0.00 43.09 3.86
1752 1775 0.972134 CTCCACAGCTTCACTCAGGA 59.028 55.000 0.00 0.00 0.00 3.86
1753 1776 0.972134 TCCACAGCTTCACTCAGGAG 59.028 55.000 0.00 0.00 0.00 3.69
1754 1777 0.673022 CCACAGCTTCACTCAGGAGC 60.673 60.000 0.00 0.00 0.00 4.70
1755 1778 0.321021 CACAGCTTCACTCAGGAGCT 59.679 55.000 0.00 0.00 36.12 4.09
1756 1779 3.140576 CAGCTTCACTCAGGAGCTG 57.859 57.895 10.68 10.68 45.24 4.24
1757 1780 0.391395 CAGCTTCACTCAGGAGCTGG 60.391 60.000 15.89 0.13 46.32 4.85
1758 1781 0.835543 AGCTTCACTCAGGAGCTGGT 60.836 55.000 0.00 0.00 34.25 4.00
1759 1782 0.673022 GCTTCACTCAGGAGCTGGTG 60.673 60.000 0.00 0.00 35.52 4.17
1760 1783 0.036577 CTTCACTCAGGAGCTGGTGG 60.037 60.000 0.00 0.00 35.20 4.61
1761 1784 0.471780 TTCACTCAGGAGCTGGTGGA 60.472 55.000 0.00 0.00 35.20 4.02
1762 1785 0.902048 TCACTCAGGAGCTGGTGGAG 60.902 60.000 0.00 0.00 35.20 3.86
1763 1786 1.157276 ACTCAGGAGCTGGTGGAGT 59.843 57.895 0.00 0.00 34.19 3.85
1764 1787 0.472734 ACTCAGGAGCTGGTGGAGTT 60.473 55.000 0.00 0.00 35.41 3.01
1765 1788 1.203187 ACTCAGGAGCTGGTGGAGTTA 60.203 52.381 0.00 0.00 35.41 2.24
1766 1789 2.114616 CTCAGGAGCTGGTGGAGTTAT 58.885 52.381 0.00 0.00 31.51 1.89
1767 1790 3.300388 CTCAGGAGCTGGTGGAGTTATA 58.700 50.000 0.00 0.00 31.51 0.98
1768 1791 3.300388 TCAGGAGCTGGTGGAGTTATAG 58.700 50.000 0.00 0.00 31.51 1.31
1769 1792 3.034635 CAGGAGCTGGTGGAGTTATAGT 58.965 50.000 0.00 0.00 0.00 2.12
1770 1793 3.452627 CAGGAGCTGGTGGAGTTATAGTT 59.547 47.826 0.00 0.00 0.00 2.24
1771 1794 3.452627 AGGAGCTGGTGGAGTTATAGTTG 59.547 47.826 0.00 0.00 0.00 3.16
1772 1795 3.451178 GGAGCTGGTGGAGTTATAGTTGA 59.549 47.826 0.00 0.00 0.00 3.18
1773 1796 4.081087 GGAGCTGGTGGAGTTATAGTTGAA 60.081 45.833 0.00 0.00 0.00 2.69
1774 1797 5.488341 GAGCTGGTGGAGTTATAGTTGAAA 58.512 41.667 0.00 0.00 0.00 2.69
1775 1798 6.067217 AGCTGGTGGAGTTATAGTTGAAAT 57.933 37.500 0.00 0.00 0.00 2.17
1776 1799 6.485171 AGCTGGTGGAGTTATAGTTGAAATT 58.515 36.000 0.00 0.00 0.00 1.82
1777 1800 6.948309 AGCTGGTGGAGTTATAGTTGAAATTT 59.052 34.615 0.00 0.00 0.00 1.82
1778 1801 7.029563 GCTGGTGGAGTTATAGTTGAAATTTG 58.970 38.462 0.00 0.00 0.00 2.32
1779 1802 6.919721 TGGTGGAGTTATAGTTGAAATTTGC 58.080 36.000 0.00 0.00 0.00 3.68
1780 1803 6.027749 GGTGGAGTTATAGTTGAAATTTGCG 58.972 40.000 0.00 0.00 0.00 4.85
1781 1804 6.027749 GTGGAGTTATAGTTGAAATTTGCGG 58.972 40.000 0.00 0.00 0.00 5.69
1782 1805 5.941058 TGGAGTTATAGTTGAAATTTGCGGA 59.059 36.000 0.00 0.00 0.00 5.54
1783 1806 6.093495 TGGAGTTATAGTTGAAATTTGCGGAG 59.907 38.462 0.00 0.00 0.00 4.63
1796 1819 4.278956 CGGAGCGCCAGTTTAACT 57.721 55.556 7.44 0.00 0.00 2.24
1797 1820 1.787847 CGGAGCGCCAGTTTAACTG 59.212 57.895 17.37 17.37 45.53 3.16
1805 1828 2.927004 CAGTTTAACTGGCTCCGCA 58.073 52.632 16.62 0.00 42.35 5.69
1806 1829 0.798776 CAGTTTAACTGGCTCCGCAG 59.201 55.000 16.62 0.00 42.35 5.18
1807 1830 0.955919 AGTTTAACTGGCTCCGCAGC 60.956 55.000 0.00 0.00 46.06 5.25
1808 1831 0.955919 GTTTAACTGGCTCCGCAGCT 60.956 55.000 0.00 0.00 46.03 4.24
1809 1832 0.673644 TTTAACTGGCTCCGCAGCTC 60.674 55.000 0.00 0.00 46.03 4.09
1810 1833 1.544825 TTAACTGGCTCCGCAGCTCT 61.545 55.000 0.00 0.00 46.03 4.09
1811 1834 1.949847 TAACTGGCTCCGCAGCTCTC 61.950 60.000 0.00 0.00 46.03 3.20
1812 1835 4.527583 CTGGCTCCGCAGCTCTCC 62.528 72.222 0.00 0.00 46.03 3.71
1824 1847 3.849064 CTCTCCGGAGCTGGTAGG 58.151 66.667 27.39 1.02 32.43 3.18
1825 1848 1.227664 CTCTCCGGAGCTGGTAGGA 59.772 63.158 27.39 6.07 32.43 2.94
1826 1849 0.178975 CTCTCCGGAGCTGGTAGGAT 60.179 60.000 27.39 0.00 32.43 3.24
1827 1850 0.261991 TCTCCGGAGCTGGTAGGATT 59.738 55.000 27.39 0.00 31.66 3.01
1828 1851 1.123928 CTCCGGAGCTGGTAGGATTT 58.876 55.000 20.67 0.00 31.66 2.17
1829 1852 1.069358 CTCCGGAGCTGGTAGGATTTC 59.931 57.143 20.67 0.00 31.66 2.17
1830 1853 0.249489 CCGGAGCTGGTAGGATTTCG 60.249 60.000 0.00 0.00 0.00 3.46
1831 1854 0.744874 CGGAGCTGGTAGGATTTCGA 59.255 55.000 0.00 0.00 0.00 3.71
1832 1855 1.136305 CGGAGCTGGTAGGATTTCGAA 59.864 52.381 0.00 0.00 0.00 3.71
1833 1856 2.552031 GGAGCTGGTAGGATTTCGAAC 58.448 52.381 0.00 0.00 0.00 3.95
1834 1857 2.194271 GAGCTGGTAGGATTTCGAACG 58.806 52.381 0.00 0.00 0.00 3.95
1835 1858 1.134788 AGCTGGTAGGATTTCGAACGG 60.135 52.381 0.00 0.00 0.00 4.44
1836 1859 1.287425 CTGGTAGGATTTCGAACGGC 58.713 55.000 0.00 0.00 0.00 5.68
1837 1860 0.108041 TGGTAGGATTTCGAACGGCC 60.108 55.000 0.00 0.00 0.00 6.13
1838 1861 0.812811 GGTAGGATTTCGAACGGCCC 60.813 60.000 0.00 0.00 0.00 5.80
1995 2018 1.885887 TGCAACCAGTAATTCACCTGC 59.114 47.619 0.00 0.00 0.00 4.85
2043 2066 5.412594 ACTGCCTATCAATATGCGTTATTGG 59.587 40.000 15.35 4.90 44.91 3.16
2045 2068 4.438744 GCCTATCAATATGCGTTATTGGCC 60.439 45.833 15.35 0.00 44.91 5.36
2051 2074 2.437002 GCGTTATTGGCCGGGTCA 60.437 61.111 2.18 0.00 0.00 4.02
2066 2089 5.067954 GCCGGGTCAGGTATAACAATTATT 58.932 41.667 2.18 0.00 0.00 1.40
2098 2121 8.537049 TTTTCCATTTTCAGAAAGCACATATG 57.463 30.769 0.00 0.00 33.75 1.78
2229 2256 7.200434 TCTAGGGAGCATAGATTGTTTTTCT 57.800 36.000 0.00 0.00 0.00 2.52
2237 2264 9.683069 GAGCATAGATTGTTTTTCTCTTTTCAA 57.317 29.630 0.00 0.00 0.00 2.69
2267 2294 6.154203 TCCATAGCTATGTTTCTCACAGAG 57.846 41.667 27.75 11.27 46.10 3.35
2271 2298 4.815269 AGCTATGTTTCTCACAGAGACAC 58.185 43.478 6.41 6.41 46.24 3.67
2415 2447 4.013728 CAAAATTCCGAGGGTGTATCCAA 58.986 43.478 0.00 0.00 38.11 3.53
2424 2456 1.677518 GGGTGTATCCAATGTGCGACA 60.678 52.381 0.00 0.00 38.11 4.35
2439 2471 3.841379 GACACGTGACGGCAGCTGA 62.841 63.158 25.01 0.00 0.00 4.26
2482 2514 1.140312 TGCCCAAGAAAGTGACCTCT 58.860 50.000 0.00 0.00 0.00 3.69
2485 2517 2.937433 GCCCAAGAAAGTGACCTCTAGC 60.937 54.545 0.00 0.00 0.00 3.42
2488 2520 1.187087 AGAAAGTGACCTCTAGCGGG 58.813 55.000 3.31 1.93 0.00 6.13
2752 2784 6.146021 AGCCTTCAAATATTTTGAAACTTGCG 59.854 34.615 14.33 4.45 37.89 4.85
3310 3360 3.216800 ACATGCTGCACTCTCTTTTTCA 58.783 40.909 3.57 0.00 0.00 2.69
3522 4422 1.564348 TCCCCCTTATTCTGTTCCTGC 59.436 52.381 0.00 0.00 0.00 4.85
3965 4877 9.737427 AGTGAATCTACACTCTAAAATATGTCG 57.263 33.333 0.00 0.00 46.36 4.35
4032 4944 7.498443 ACTTATATTTAGAAACGGAGGGAGTG 58.502 38.462 0.00 0.00 0.00 3.51
5306 6228 2.749621 GTGGGAGCAAGAGTTTGTATGG 59.250 50.000 0.00 0.00 36.65 2.74
5553 6512 8.686334 CAGGAGGCTTAAAAATGCTAAAATCTA 58.314 33.333 0.00 0.00 0.00 1.98
5819 7022 3.454447 TCAGTCTTCCTCAACAAGTTCCA 59.546 43.478 0.00 0.00 0.00 3.53
6603 10448 6.653526 TTATGTATGGGATTCCTTGCAATG 57.346 37.500 0.00 0.00 36.66 2.82
6750 10599 2.130073 GAGCAACCGGTTTCTGCACC 62.130 60.000 24.54 14.05 38.58 5.01
6759 10608 2.161609 CGGTTTCTGCACCAACTTATCC 59.838 50.000 3.80 0.00 36.49 2.59
7024 11286 4.887655 ACGATATGGCACGATGATCCTATA 59.112 41.667 2.83 0.00 0.00 1.31
7592 11877 4.022935 TCAAATGATGTTGACAAGTGCCTC 60.023 41.667 0.00 0.00 32.56 4.70
7846 12131 4.884668 AGGTATCTCAGGAAAACGTTCA 57.115 40.909 0.00 0.00 35.25 3.18
8021 12306 7.915293 ATATCACGGTGATAAACAAGAACAA 57.085 32.000 28.79 9.14 42.05 2.83
8201 12486 7.713942 TGTAGCTCTACAATCTGATCGTAAGTA 59.286 37.037 7.24 0.00 42.49 2.24
8605 12891 8.778358 GTCAATGAGAAACACTAAGAGTTCAAT 58.222 33.333 0.00 0.00 0.00 2.57
8808 13094 2.226330 CAACCTCATCGTGTTTCCCAA 58.774 47.619 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.201688 ATTTCTATAAATGTGTGCATGCACGTA 60.202 33.333 37.76 30.42 40.40 3.57
18 19 6.404623 ATTTCTATAAATGTGTGCATGCACGT 60.405 34.615 37.76 26.30 40.40 4.49
19 20 5.972973 ATTTCTATAAATGTGTGCATGCACG 59.027 36.000 37.76 23.57 40.40 5.34
20 21 8.854979 TTATTTCTATAAATGTGTGCATGCAC 57.145 30.769 38.00 38.00 40.07 4.57
21 22 8.685427 ACTTATTTCTATAAATGTGTGCATGCA 58.315 29.630 18.46 18.46 36.02 3.96
31 32 9.640963 CGGAGGGAGTACTTATTTCTATAAATG 57.359 37.037 0.00 0.00 36.02 2.32
32 33 9.377238 ACGGAGGGAGTACTTATTTCTATAAAT 57.623 33.333 0.00 0.00 38.80 1.40
33 34 8.773033 ACGGAGGGAGTACTTATTTCTATAAA 57.227 34.615 0.00 0.00 0.00 1.40
34 35 7.449704 GGACGGAGGGAGTACTTATTTCTATAA 59.550 40.741 0.00 0.00 0.00 0.98
35 36 6.944862 GGACGGAGGGAGTACTTATTTCTATA 59.055 42.308 0.00 0.00 0.00 1.31
36 37 5.774184 GGACGGAGGGAGTACTTATTTCTAT 59.226 44.000 0.00 0.00 0.00 1.98
37 38 5.136105 GGACGGAGGGAGTACTTATTTCTA 58.864 45.833 0.00 0.00 0.00 2.10
38 39 3.959449 GGACGGAGGGAGTACTTATTTCT 59.041 47.826 0.00 0.00 0.00 2.52
39 40 3.703052 TGGACGGAGGGAGTACTTATTTC 59.297 47.826 0.00 0.00 0.00 2.17
40 41 3.716431 TGGACGGAGGGAGTACTTATTT 58.284 45.455 0.00 0.00 0.00 1.40
41 42 3.393426 TGGACGGAGGGAGTACTTATT 57.607 47.619 0.00 0.00 0.00 1.40
42 43 3.393426 TTGGACGGAGGGAGTACTTAT 57.607 47.619 0.00 0.00 0.00 1.73
43 44 2.905415 TTGGACGGAGGGAGTACTTA 57.095 50.000 0.00 0.00 0.00 2.24
44 45 2.019807 TTTGGACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
45 46 2.019807 TTTTGGACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
46 47 2.696506 CTTTTTGGACGGAGGGAGTAC 58.303 52.381 0.00 0.00 0.00 2.73
47 48 1.002773 GCTTTTTGGACGGAGGGAGTA 59.997 52.381 0.00 0.00 0.00 2.59
48 49 0.250770 GCTTTTTGGACGGAGGGAGT 60.251 55.000 0.00 0.00 0.00 3.85
49 50 0.036875 AGCTTTTTGGACGGAGGGAG 59.963 55.000 0.00 0.00 0.00 4.30
50 51 0.250727 CAGCTTTTTGGACGGAGGGA 60.251 55.000 0.00 0.00 0.00 4.20
51 52 1.244019 CCAGCTTTTTGGACGGAGGG 61.244 60.000 0.00 0.00 40.87 4.30
52 53 0.537371 ACCAGCTTTTTGGACGGAGG 60.537 55.000 0.00 0.00 40.87 4.30
53 54 0.875059 GACCAGCTTTTTGGACGGAG 59.125 55.000 0.00 0.00 40.87 4.63
54 55 0.536460 GGACCAGCTTTTTGGACGGA 60.536 55.000 0.00 0.00 40.87 4.69
55 56 0.537371 AGGACCAGCTTTTTGGACGG 60.537 55.000 0.00 0.00 40.87 4.79
56 57 1.266989 GAAGGACCAGCTTTTTGGACG 59.733 52.381 0.00 0.00 40.87 4.79
57 58 1.266989 CGAAGGACCAGCTTTTTGGAC 59.733 52.381 0.00 0.00 40.87 4.02
58 59 1.142060 TCGAAGGACCAGCTTTTTGGA 59.858 47.619 0.00 0.00 40.87 3.53
59 60 1.604604 TCGAAGGACCAGCTTTTTGG 58.395 50.000 0.00 0.00 44.09 3.28
60 61 3.253188 TCATTCGAAGGACCAGCTTTTTG 59.747 43.478 8.70 0.00 0.00 2.44
61 62 3.486383 TCATTCGAAGGACCAGCTTTTT 58.514 40.909 8.70 0.00 0.00 1.94
62 63 3.140325 TCATTCGAAGGACCAGCTTTT 57.860 42.857 8.70 0.00 0.00 2.27
63 64 2.859165 TCATTCGAAGGACCAGCTTT 57.141 45.000 8.70 0.00 0.00 3.51
64 65 2.859165 TTCATTCGAAGGACCAGCTT 57.141 45.000 12.77 0.00 0.00 3.74
65 66 2.026822 ACATTCATTCGAAGGACCAGCT 60.027 45.455 12.77 0.00 36.43 4.24
66 67 2.359900 ACATTCATTCGAAGGACCAGC 58.640 47.619 12.77 0.00 36.43 4.85
67 68 6.683974 AAATACATTCATTCGAAGGACCAG 57.316 37.500 12.77 7.80 36.43 4.00
68 69 7.608376 TGTTAAATACATTCATTCGAAGGACCA 59.392 33.333 12.77 0.00 36.43 4.02
69 70 7.908601 GTGTTAAATACATTCATTCGAAGGACC 59.091 37.037 12.77 0.00 39.39 4.46
70 71 7.908601 GGTGTTAAATACATTCATTCGAAGGAC 59.091 37.037 12.77 0.00 39.39 3.85
71 72 7.608376 TGGTGTTAAATACATTCATTCGAAGGA 59.392 33.333 8.70 8.70 39.39 3.36
72 73 7.757526 TGGTGTTAAATACATTCATTCGAAGG 58.242 34.615 2.79 2.79 39.39 3.46
73 74 9.619316 TTTGGTGTTAAATACATTCATTCGAAG 57.381 29.630 3.35 0.00 39.39 3.79
80 81 9.632807 GCACTAATTTGGTGTTAAATACATTCA 57.367 29.630 13.54 0.00 39.39 2.57
81 82 9.855021 AGCACTAATTTGGTGTTAAATACATTC 57.145 29.630 13.54 0.00 39.39 2.67
84 85 9.727859 TCTAGCACTAATTTGGTGTTAAATACA 57.272 29.630 13.54 0.00 37.07 2.29
88 89 9.727859 TGTATCTAGCACTAATTTGGTGTTAAA 57.272 29.630 13.54 0.64 37.07 1.52
89 90 9.899661 ATGTATCTAGCACTAATTTGGTGTTAA 57.100 29.630 13.54 5.01 37.07 2.01
90 91 9.542462 GATGTATCTAGCACTAATTTGGTGTTA 57.458 33.333 13.54 11.01 37.07 2.41
91 92 8.046708 TGATGTATCTAGCACTAATTTGGTGTT 58.953 33.333 13.54 10.47 37.07 3.32
92 93 7.564793 TGATGTATCTAGCACTAATTTGGTGT 58.435 34.615 13.54 4.55 37.07 4.16
93 94 8.613060 ATGATGTATCTAGCACTAATTTGGTG 57.387 34.615 8.41 8.41 37.70 4.17
94 95 9.632638 AAATGATGTATCTAGCACTAATTTGGT 57.367 29.630 0.00 0.00 0.00 3.67
165 167 2.081462 GGTGCTTACGTGCCTTGTAAT 58.919 47.619 0.00 0.00 31.85 1.89
216 219 3.192422 ACAGGCGCTGTTATTTTGCATAA 59.808 39.130 7.64 0.00 42.59 1.90
245 248 1.270625 CCGCTTTGGTGGTGTAGAAGA 60.271 52.381 0.00 0.00 38.25 2.87
259 262 2.871096 TACCCTTTGATGACCGCTTT 57.129 45.000 0.00 0.00 0.00 3.51
266 269 7.174946 GTGATCTGTCTTTTTACCCTTTGATGA 59.825 37.037 0.00 0.00 0.00 2.92
377 380 2.413837 CGGTCTGATTCTTTCAACGGT 58.586 47.619 0.00 0.00 32.78 4.83
419 422 4.576463 GTGTCAGTTCTGAAGTTTGATGGT 59.424 41.667 3.99 0.00 0.00 3.55
475 478 1.980232 TCGAAGGCGGGCAGTTCTA 60.980 57.895 3.78 0.00 38.28 2.10
569 573 1.876156 GTGGAGCAGAGAGGTTTTGTG 59.124 52.381 0.00 0.00 0.00 3.33
580 584 1.591703 GACGTCATGGTGGAGCAGA 59.408 57.895 11.55 0.00 0.00 4.26
765 769 4.567597 ACCCCACTCCCACACCGA 62.568 66.667 0.00 0.00 0.00 4.69
827 831 0.179078 TTTGTAGGTCGTGGTGCGTT 60.179 50.000 0.00 0.00 42.13 4.84
879 883 1.231641 CGACAGGAGAGAGGGGGAT 59.768 63.158 0.00 0.00 0.00 3.85
1010 1019 1.202582 GAACTCACGCTAGCCTCAAGA 59.797 52.381 9.66 0.00 0.00 3.02
1011 1020 1.067565 TGAACTCACGCTAGCCTCAAG 60.068 52.381 9.66 4.40 0.00 3.02
1012 1021 0.966179 TGAACTCACGCTAGCCTCAA 59.034 50.000 9.66 0.00 0.00 3.02
1014 1023 0.179124 CCTGAACTCACGCTAGCCTC 60.179 60.000 9.66 0.00 0.00 4.70
1015 1024 0.900647 ACCTGAACTCACGCTAGCCT 60.901 55.000 9.66 0.00 0.00 4.58
1016 1025 0.037232 AACCTGAACTCACGCTAGCC 60.037 55.000 9.66 0.00 0.00 3.93
1017 1026 1.461127 CAAACCTGAACTCACGCTAGC 59.539 52.381 4.06 4.06 0.00 3.42
1018 1027 3.026630 TCAAACCTGAACTCACGCTAG 57.973 47.619 0.00 0.00 0.00 3.42
1019 1028 3.678056 ATCAAACCTGAACTCACGCTA 57.322 42.857 0.00 0.00 34.49 4.26
1020 1029 2.550830 ATCAAACCTGAACTCACGCT 57.449 45.000 0.00 0.00 34.49 5.07
1021 1030 3.585862 TCTATCAAACCTGAACTCACGC 58.414 45.455 0.00 0.00 34.49 5.34
1022 1031 6.330278 TGTATCTATCAAACCTGAACTCACG 58.670 40.000 0.00 0.00 34.49 4.35
1023 1032 7.439655 GGATGTATCTATCAAACCTGAACTCAC 59.560 40.741 0.00 0.00 34.49 3.51
1024 1033 7.125659 TGGATGTATCTATCAAACCTGAACTCA 59.874 37.037 0.00 0.00 34.49 3.41
1025 1034 7.500992 TGGATGTATCTATCAAACCTGAACTC 58.499 38.462 0.00 0.00 34.49 3.01
1026 1035 7.437713 TGGATGTATCTATCAAACCTGAACT 57.562 36.000 0.00 0.00 34.49 3.01
1027 1036 8.682936 AATGGATGTATCTATCAAACCTGAAC 57.317 34.615 0.00 0.00 34.49 3.18
1028 1037 9.123902 CAAATGGATGTATCTATCAAACCTGAA 57.876 33.333 0.00 0.00 34.49 3.02
1029 1038 8.493607 TCAAATGGATGTATCTATCAAACCTGA 58.506 33.333 0.00 0.00 35.56 3.86
1030 1039 8.681486 TCAAATGGATGTATCTATCAAACCTG 57.319 34.615 0.00 0.00 0.00 4.00
1031 1040 8.717717 TCTCAAATGGATGTATCTATCAAACCT 58.282 33.333 0.00 0.00 0.00 3.50
1032 1041 8.778358 GTCTCAAATGGATGTATCTATCAAACC 58.222 37.037 0.00 0.00 0.00 3.27
1033 1042 9.330063 TGTCTCAAATGGATGTATCTATCAAAC 57.670 33.333 0.00 0.00 0.00 2.93
1034 1043 9.904198 TTGTCTCAAATGGATGTATCTATCAAA 57.096 29.630 0.00 0.00 0.00 2.69
1035 1044 9.551734 CTTGTCTCAAATGGATGTATCTATCAA 57.448 33.333 0.00 0.00 0.00 2.57
1036 1045 8.708378 ACTTGTCTCAAATGGATGTATCTATCA 58.292 33.333 0.00 0.00 0.00 2.15
1037 1046 9.553064 AACTTGTCTCAAATGGATGTATCTATC 57.447 33.333 0.00 0.00 0.00 2.08
1038 1047 9.911788 AAACTTGTCTCAAATGGATGTATCTAT 57.088 29.630 0.00 0.00 0.00 1.98
1039 1048 9.739276 AAAACTTGTCTCAAATGGATGTATCTA 57.261 29.630 0.00 0.00 0.00 1.98
1040 1049 8.641498 AAAACTTGTCTCAAATGGATGTATCT 57.359 30.769 0.00 0.00 0.00 1.98
1063 1072 1.005867 CCTCCGTCCGTCCGAAAAA 60.006 57.895 0.00 0.00 0.00 1.94
1064 1073 2.652530 CCTCCGTCCGTCCGAAAA 59.347 61.111 0.00 0.00 0.00 2.29
1065 1074 2.762969 TACCCTCCGTCCGTCCGAAA 62.763 60.000 0.00 0.00 0.00 3.46
1066 1075 2.556840 ATACCCTCCGTCCGTCCGAA 62.557 60.000 0.00 0.00 0.00 4.30
1067 1076 1.695114 TATACCCTCCGTCCGTCCGA 61.695 60.000 0.00 0.00 0.00 4.55
1068 1077 0.607489 ATATACCCTCCGTCCGTCCG 60.607 60.000 0.00 0.00 0.00 4.79
1069 1078 0.886563 CATATACCCTCCGTCCGTCC 59.113 60.000 0.00 0.00 0.00 4.79
1070 1079 1.268899 CACATATACCCTCCGTCCGTC 59.731 57.143 0.00 0.00 0.00 4.79
1071 1080 1.325355 CACATATACCCTCCGTCCGT 58.675 55.000 0.00 0.00 0.00 4.69
1072 1081 1.325355 ACACATATACCCTCCGTCCG 58.675 55.000 0.00 0.00 0.00 4.79
1073 1082 5.655532 ACATATACACATATACCCTCCGTCC 59.344 44.000 0.00 0.00 0.00 4.79
1074 1083 6.770746 ACATATACACATATACCCTCCGTC 57.229 41.667 0.00 0.00 0.00 4.79
1075 1084 9.347240 GTATACATATACACATATACCCTCCGT 57.653 37.037 0.00 0.00 38.66 4.69
1076 1085 8.501580 CGTATACATATACACATATACCCTCCG 58.498 40.741 3.32 0.00 38.72 4.63
1077 1086 9.347240 ACGTATACATATACACATATACCCTCC 57.653 37.037 3.32 0.00 38.72 4.30
1079 1088 9.128404 CCACGTATACATATACACATATACCCT 57.872 37.037 3.32 0.00 38.72 4.34
1080 1089 8.355169 CCCACGTATACATATACACATATACCC 58.645 40.741 3.32 0.00 38.72 3.69
1081 1090 7.864379 GCCCACGTATACATATACACATATACC 59.136 40.741 3.32 0.00 38.72 2.73
1082 1091 8.407832 TGCCCACGTATACATATACACATATAC 58.592 37.037 3.32 0.00 38.72 1.47
1088 1097 5.962433 AGATGCCCACGTATACATATACAC 58.038 41.667 3.32 0.00 38.72 2.90
1090 1099 6.197276 CGTAGATGCCCACGTATACATATAC 58.803 44.000 14.07 14.07 35.11 1.47
1284 1294 2.203056 TGCGTGTGCTGCTCTTGT 60.203 55.556 0.00 0.00 43.34 3.16
1297 1307 4.770795 AGCAAGAATAAGGATTAGTGCGT 58.229 39.130 0.00 0.00 38.82 5.24
1707 1730 1.609783 CCTCCCAACAGGGCCTAAG 59.390 63.158 5.28 0.00 42.73 2.18
1708 1731 2.612493 GCCTCCCAACAGGGCCTAA 61.612 63.158 5.28 0.00 42.73 2.69
1709 1732 3.015145 GCCTCCCAACAGGGCCTA 61.015 66.667 5.28 0.00 42.73 3.93
1712 1735 3.927481 GAGTGCCTCCCAACAGGGC 62.927 68.421 0.00 0.00 42.73 5.19
1713 1736 2.352805 GAGTGCCTCCCAACAGGG 59.647 66.667 0.00 0.00 44.52 4.45
1714 1737 2.352805 GGAGTGCCTCCCAACAGG 59.647 66.667 9.46 0.00 44.36 4.00
1732 1755 0.673022 CCTGAGTGAAGCTGTGGAGC 60.673 60.000 0.00 0.00 46.64 4.70
1733 1756 0.972134 TCCTGAGTGAAGCTGTGGAG 59.028 55.000 0.00 0.00 0.00 3.86
1734 1757 0.972134 CTCCTGAGTGAAGCTGTGGA 59.028 55.000 0.00 0.00 0.00 4.02
1735 1758 0.673022 GCTCCTGAGTGAAGCTGTGG 60.673 60.000 0.00 0.00 0.00 4.17
1736 1759 0.321021 AGCTCCTGAGTGAAGCTGTG 59.679 55.000 1.16 0.00 34.25 3.66
1737 1760 0.321021 CAGCTCCTGAGTGAAGCTGT 59.679 55.000 16.12 0.00 45.39 4.40
1738 1761 3.140576 CAGCTCCTGAGTGAAGCTG 57.859 57.895 12.31 12.31 45.24 4.24
1739 1762 0.835543 ACCAGCTCCTGAGTGAAGCT 60.836 55.000 0.00 0.00 32.44 3.74
1740 1763 0.673022 CACCAGCTCCTGAGTGAAGC 60.673 60.000 7.59 0.00 35.92 3.86
1741 1764 0.036577 CCACCAGCTCCTGAGTGAAG 60.037 60.000 12.37 0.00 35.92 3.02
1742 1765 0.471780 TCCACCAGCTCCTGAGTGAA 60.472 55.000 12.37 0.00 35.92 3.18
1743 1766 0.902048 CTCCACCAGCTCCTGAGTGA 60.902 60.000 12.37 0.00 35.92 3.41
1744 1767 1.190833 ACTCCACCAGCTCCTGAGTG 61.191 60.000 4.42 1.26 35.12 3.51
1745 1768 0.472734 AACTCCACCAGCTCCTGAGT 60.473 55.000 0.00 0.00 37.88 3.41
1746 1769 1.561643 TAACTCCACCAGCTCCTGAG 58.438 55.000 0.00 0.00 32.44 3.35
1747 1770 2.254152 ATAACTCCACCAGCTCCTGA 57.746 50.000 0.00 0.00 32.44 3.86
1748 1771 3.034635 ACTATAACTCCACCAGCTCCTG 58.965 50.000 0.00 0.00 0.00 3.86
1749 1772 3.406512 ACTATAACTCCACCAGCTCCT 57.593 47.619 0.00 0.00 0.00 3.69
1750 1773 3.451178 TCAACTATAACTCCACCAGCTCC 59.549 47.826 0.00 0.00 0.00 4.70
1751 1774 4.737855 TCAACTATAACTCCACCAGCTC 57.262 45.455 0.00 0.00 0.00 4.09
1752 1775 5.499004 TTTCAACTATAACTCCACCAGCT 57.501 39.130 0.00 0.00 0.00 4.24
1753 1776 6.759497 AATTTCAACTATAACTCCACCAGC 57.241 37.500 0.00 0.00 0.00 4.85
1754 1777 7.029563 GCAAATTTCAACTATAACTCCACCAG 58.970 38.462 0.00 0.00 0.00 4.00
1755 1778 6.348950 CGCAAATTTCAACTATAACTCCACCA 60.349 38.462 0.00 0.00 0.00 4.17
1756 1779 6.027749 CGCAAATTTCAACTATAACTCCACC 58.972 40.000 0.00 0.00 0.00 4.61
1757 1780 6.027749 CCGCAAATTTCAACTATAACTCCAC 58.972 40.000 0.00 0.00 0.00 4.02
1758 1781 5.941058 TCCGCAAATTTCAACTATAACTCCA 59.059 36.000 0.00 0.00 0.00 3.86
1759 1782 6.431198 TCCGCAAATTTCAACTATAACTCC 57.569 37.500 0.00 0.00 0.00 3.85
1760 1783 5.965918 GCTCCGCAAATTTCAACTATAACTC 59.034 40.000 0.00 0.00 0.00 3.01
1761 1784 5.447279 CGCTCCGCAAATTTCAACTATAACT 60.447 40.000 0.00 0.00 0.00 2.24
1762 1785 4.728608 CGCTCCGCAAATTTCAACTATAAC 59.271 41.667 0.00 0.00 0.00 1.89
1763 1786 4.904116 CGCTCCGCAAATTTCAACTATAA 58.096 39.130 0.00 0.00 0.00 0.98
1764 1787 4.530094 CGCTCCGCAAATTTCAACTATA 57.470 40.909 0.00 0.00 0.00 1.31
1765 1788 3.405170 CGCTCCGCAAATTTCAACTAT 57.595 42.857 0.00 0.00 0.00 2.12
1766 1789 2.892373 CGCTCCGCAAATTTCAACTA 57.108 45.000 0.00 0.00 0.00 2.24
1767 1790 3.773117 CGCTCCGCAAATTTCAACT 57.227 47.368 0.00 0.00 0.00 3.16
1779 1802 1.787847 CAGTTAAACTGGCGCTCCG 59.212 57.895 7.64 0.00 42.35 4.63
1807 1830 0.178975 ATCCTACCAGCTCCGGAGAG 60.179 60.000 35.69 24.39 43.57 3.20
1808 1831 0.261991 AATCCTACCAGCTCCGGAGA 59.738 55.000 35.69 12.84 0.00 3.71
1809 1832 1.069358 GAAATCCTACCAGCTCCGGAG 59.931 57.143 27.83 27.83 0.00 4.63
1810 1833 1.120530 GAAATCCTACCAGCTCCGGA 58.879 55.000 2.93 2.93 0.00 5.14
1811 1834 0.249489 CGAAATCCTACCAGCTCCGG 60.249 60.000 0.00 0.00 0.00 5.14
1812 1835 0.744874 TCGAAATCCTACCAGCTCCG 59.255 55.000 0.00 0.00 0.00 4.63
1813 1836 2.552031 GTTCGAAATCCTACCAGCTCC 58.448 52.381 0.00 0.00 0.00 4.70
1814 1837 2.194271 CGTTCGAAATCCTACCAGCTC 58.806 52.381 0.00 0.00 0.00 4.09
1815 1838 1.134788 CCGTTCGAAATCCTACCAGCT 60.135 52.381 0.00 0.00 0.00 4.24
1816 1839 1.287425 CCGTTCGAAATCCTACCAGC 58.713 55.000 0.00 0.00 0.00 4.85
1817 1840 1.287425 GCCGTTCGAAATCCTACCAG 58.713 55.000 0.00 0.00 0.00 4.00
1818 1841 0.108041 GGCCGTTCGAAATCCTACCA 60.108 55.000 0.00 0.00 0.00 3.25
1819 1842 0.812811 GGGCCGTTCGAAATCCTACC 60.813 60.000 0.00 0.00 0.00 3.18
1820 1843 0.812811 GGGGCCGTTCGAAATCCTAC 60.813 60.000 0.00 0.00 0.00 3.18
1821 1844 0.979187 AGGGGCCGTTCGAAATCCTA 60.979 55.000 0.00 0.00 0.00 2.94
1822 1845 1.848886 AAGGGGCCGTTCGAAATCCT 61.849 55.000 5.47 0.00 0.00 3.24
1823 1846 0.107557 TAAGGGGCCGTTCGAAATCC 60.108 55.000 15.83 0.91 0.00 3.01
1824 1847 1.741528 TTAAGGGGCCGTTCGAAATC 58.258 50.000 15.83 0.00 0.00 2.17
1825 1848 2.430248 ATTAAGGGGCCGTTCGAAAT 57.570 45.000 15.83 7.17 0.00 2.17
1826 1849 2.086094 GAATTAAGGGGCCGTTCGAAA 58.914 47.619 15.83 4.89 0.00 3.46
1827 1850 1.279846 AGAATTAAGGGGCCGTTCGAA 59.720 47.619 15.83 5.66 0.00 3.71
1828 1851 0.906775 AGAATTAAGGGGCCGTTCGA 59.093 50.000 15.83 6.09 0.00 3.71
1829 1852 1.669265 GAAGAATTAAGGGGCCGTTCG 59.331 52.381 15.83 0.00 0.00 3.95
1830 1853 2.683362 CAGAAGAATTAAGGGGCCGTTC 59.317 50.000 15.83 0.67 0.00 3.95
1831 1854 2.041216 ACAGAAGAATTAAGGGGCCGTT 59.959 45.455 16.62 16.62 0.00 4.44
1832 1855 1.633945 ACAGAAGAATTAAGGGGCCGT 59.366 47.619 0.00 0.00 0.00 5.68
1833 1856 2.289565 GACAGAAGAATTAAGGGGCCG 58.710 52.381 0.00 0.00 0.00 6.13
1834 1857 2.656002 GGACAGAAGAATTAAGGGGCC 58.344 52.381 0.00 0.00 0.00 5.80
1835 1858 2.242452 AGGGACAGAAGAATTAAGGGGC 59.758 50.000 0.00 0.00 0.00 5.80
1836 1859 3.891049 CAGGGACAGAAGAATTAAGGGG 58.109 50.000 0.00 0.00 0.00 4.79
1837 1860 3.282885 GCAGGGACAGAAGAATTAAGGG 58.717 50.000 0.00 0.00 0.00 3.95
1838 1861 3.282885 GGCAGGGACAGAAGAATTAAGG 58.717 50.000 0.00 0.00 0.00 2.69
1995 2018 9.003658 AGTTGGTAAAATCTCAGTATTTCACAG 57.996 33.333 0.00 0.00 0.00 3.66
2043 2066 2.632987 ATTGTTATACCTGACCCGGC 57.367 50.000 0.00 0.00 0.00 6.13
2045 2068 8.717821 CACATAATAATTGTTATACCTGACCCG 58.282 37.037 7.08 0.00 0.00 5.28
2066 2089 7.984050 TGCTTTCTGAAAATGGAAAAACACATA 59.016 29.630 4.18 0.00 32.17 2.29
2229 2256 6.594788 AGCTATGGATGCTTTTTGAAAAGA 57.405 33.333 17.83 5.84 46.39 2.52
2237 2264 6.830324 TGAGAAACATAGCTATGGATGCTTTT 59.170 34.615 31.87 22.59 41.46 2.27
2315 2342 4.898861 TGGTTTTCTTAGGTTTTGGCAGAT 59.101 37.500 0.00 0.00 0.00 2.90
2415 2447 2.733218 CCGTCACGTGTCGCACAT 60.733 61.111 26.15 0.00 33.40 3.21
2424 2456 2.661866 GTTCAGCTGCCGTCACGT 60.662 61.111 9.47 0.00 0.00 4.49
2434 2466 1.103398 GCCAAGTGGTGTGTTCAGCT 61.103 55.000 0.00 0.00 41.91 4.24
2467 2499 2.611518 CCGCTAGAGGTCACTTTCTTG 58.388 52.381 4.00 0.00 0.00 3.02
2482 2514 2.365105 CCTTGGAGGACCCCGCTA 60.365 66.667 0.00 0.00 37.67 4.26
2485 2517 3.629035 TACCCCTTGGAGGACCCCG 62.629 68.421 0.00 0.00 37.67 5.73
2488 2520 3.737122 GGTACCCCTTGGAGGACC 58.263 66.667 0.00 0.00 37.67 4.46
2651 2683 2.257691 CCTGATCATTCTCCAGGCTG 57.742 55.000 7.75 7.75 40.69 4.85
2655 2687 2.223923 GGTCGACCTGATCATTCTCCAG 60.224 54.545 27.64 0.00 0.00 3.86
2752 2784 0.321346 CAAATGTCCAACAAGCCCCC 59.679 55.000 0.00 0.00 0.00 5.40
2843 2876 4.082300 TCAGCAAGCTTCACAAAAGTTTCA 60.082 37.500 0.00 0.00 0.00 2.69
3218 3261 5.219343 TGGATATGTGCATCAACTAGGAG 57.781 43.478 0.00 0.00 0.00 3.69
3272 3322 6.183360 GCAGCATGTTTTTATACACATTGTGG 60.183 38.462 20.33 3.56 39.31 4.17
3289 3339 3.216800 TGAAAAAGAGAGTGCAGCATGT 58.783 40.909 0.00 0.00 39.31 3.21
3310 3360 9.681062 TTAGCAGTATCAAAACCTTATTTAGCT 57.319 29.630 0.00 0.00 0.00 3.32
3522 4422 1.915141 AAGGGTCAAATCAGCCACAG 58.085 50.000 0.00 0.00 36.28 3.66
4032 4944 0.680921 TGCCCTACTGCCTTTGATGC 60.681 55.000 0.00 0.00 0.00 3.91
4920 5842 1.302511 AGGCGAATGTTGGCGTTCT 60.303 52.632 0.00 0.00 38.22 3.01
5306 6228 0.234884 CGAACACCAGTCTTTTCGCC 59.765 55.000 0.00 0.00 34.96 5.54
5506 6465 1.072489 TGGTAAGTTCCATCGTTGGCA 59.928 47.619 7.70 0.00 43.29 4.92
5553 6512 4.446371 CTTCAAGAAGTCTTCCACTGTGT 58.554 43.478 9.04 0.00 34.56 3.72
5819 7022 9.404848 AGATTGTCATTCATCACATAGTCAAAT 57.595 29.630 0.00 0.00 0.00 2.32
6603 10448 3.521560 TGAGCATATTCAAGTCACCGAC 58.478 45.455 0.00 0.00 0.00 4.79
6750 10599 5.437289 TCAGTTTTGCTGTGGATAAGTTG 57.563 39.130 0.00 0.00 45.23 3.16
6759 10608 2.684881 AGGTCTGTTCAGTTTTGCTGTG 59.315 45.455 0.00 0.00 45.23 3.66
7107 11369 3.118038 ACCATGATGTTACACGGCCTAAT 60.118 43.478 0.00 0.00 0.00 1.73
7267 11551 1.475403 CACACCCTCAGATCCTACGT 58.525 55.000 0.00 0.00 0.00 3.57
7758 12043 6.857492 AGATGGATATCGCCCAATGTGTGG 62.857 50.000 0.00 0.00 41.68 4.17
7846 12131 6.542821 TGTGTTCTCAAACTTGATTATCCCT 58.457 36.000 0.00 0.00 36.46 4.20
8021 12306 0.826062 GCAGTGCCATAATTTGCCCT 59.174 50.000 2.85 0.00 0.00 5.19
8605 12891 1.941209 GCATGTCGTCAGGAGCTTTCA 60.941 52.381 0.00 0.00 0.00 2.69
8808 13094 7.554835 TCACTGTAAAGGTATCAAAAACACACT 59.445 33.333 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.