Multiple sequence alignment - TraesCS5D01G101400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G101400 chr5D 100.000 4700 0 0 1 4700 114355369 114360068 0.000000e+00 8680.0
1 TraesCS5D01G101400 chr5D 96.512 86 3 0 591 676 114355742 114355827 4.900000e-30 143.0
2 TraesCS5D01G101400 chr5D 96.512 86 3 0 374 459 114355959 114356044 4.900000e-30 143.0
3 TraesCS5D01G101400 chr5D 74.214 159 35 6 591 747 9495311 9495465 1.410000e-05 62.1
4 TraesCS5D01G101400 chr5D 81.250 80 12 2 455 531 296702559 296702480 1.410000e-05 62.1
5 TraesCS5D01G101400 chr5D 92.105 38 3 0 374 411 9495311 9495348 2.000000e-03 54.7
6 TraesCS5D01G101400 chr5D 100.000 29 0 0 455 483 12978468 12978496 2.000000e-03 54.7
7 TraesCS5D01G101400 chr5A 95.643 3764 127 16 968 4700 119542502 119546259 0.000000e+00 6008.0
8 TraesCS5D01G101400 chr5A 87.852 461 53 2 1 459 119541800 119542259 5.350000e-149 538.0
9 TraesCS5D01G101400 chr5A 92.121 330 22 3 591 919 119542174 119542500 3.310000e-126 462.0
10 TraesCS5D01G101400 chr5B 97.521 2380 57 2 975 3354 125254598 125256975 0.000000e+00 4067.0
11 TraesCS5D01G101400 chr5B 93.121 1381 58 10 3352 4700 125257098 125258473 0.000000e+00 1989.0
12 TraesCS5D01G101400 chr5B 94.248 226 6 1 694 919 125248074 125248292 5.830000e-89 339.0
13 TraesCS5D01G101400 chr5B 96.063 127 5 0 333 459 125235001 125235127 1.710000e-49 207.0
14 TraesCS5D01G101400 chr5B 97.248 109 3 0 591 699 125235042 125235150 8.030000e-43 185.0
15 TraesCS5D01G101400 chr1D 78.492 358 58 13 1 347 105967192 105967541 2.850000e-52 217.0
16 TraesCS5D01G101400 chr1D 97.368 38 1 0 591 628 357460936 357460973 1.090000e-06 65.8
17 TraesCS5D01G101400 chr1D 94.737 38 2 0 374 411 357460936 357460973 5.080000e-05 60.2
18 TraesCS5D01G101400 chr2D 77.966 354 67 9 1 345 380417042 380416691 1.330000e-50 211.0
19 TraesCS5D01G101400 chr2D 79.100 311 56 7 1 303 267696877 267696568 6.160000e-49 206.0
20 TraesCS5D01G101400 chr2D 84.746 59 8 1 602 659 618654816 618654758 1.830000e-04 58.4
21 TraesCS5D01G101400 chr2D 89.130 46 4 1 385 429 618654816 618654771 6.570000e-04 56.5
22 TraesCS5D01G101400 chr1A 77.904 353 68 8 1 344 508148464 508148815 1.330000e-50 211.0
23 TraesCS5D01G101400 chr1A 76.860 363 72 10 1 353 593291283 593290923 1.330000e-45 195.0
24 TraesCS5D01G101400 chr7B 77.410 363 70 10 1 353 469536425 469536065 6.160000e-49 206.0
25 TraesCS5D01G101400 chr6B 78.662 314 58 8 1 306 291863147 291862835 2.870000e-47 200.0
26 TraesCS5D01G101400 chr3A 78.328 323 61 8 1 315 232272109 232272430 2.870000e-47 200.0
27 TraesCS5D01G101400 chr7A 97.222 36 1 0 374 409 496093360 496093325 1.410000e-05 62.1
28 TraesCS5D01G101400 chr4D 100.000 29 0 0 455 483 491732107 491732135 2.000000e-03 54.7
29 TraesCS5D01G101400 chr4D 94.118 34 2 0 383 416 65580695 65580662 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G101400 chr5D 114355369 114360068 4699 False 8680 8680 100.000 1 4700 1 chr5D.!!$F2 4699
1 TraesCS5D01G101400 chr5A 119541800 119546259 4459 False 2336 6008 91.872 1 4700 3 chr5A.!!$F1 4699
2 TraesCS5D01G101400 chr5B 125254598 125258473 3875 False 3028 4067 95.321 975 4700 2 chr5B.!!$F3 3725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 265 0.037232 GCCTCCAGAAACGCTAGTGT 60.037 55.0 2.24 2.24 0.0 3.55 F
951 955 0.109458 TAATATACTCCTGCGCCGCG 60.109 55.0 8.83 8.83 0.0 6.46 F
1110 1114 0.249657 GCCAATCTCTCAGCCCGTAG 60.250 60.0 0.00 0.00 0.0 3.51 F
1921 1925 0.240945 GGACTTTGGTTCATGGTGCG 59.759 55.0 0.00 0.00 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1116 1120 1.003118 CGGTGGAAAGGTTGGATCTCA 59.997 52.381 0.00 0.0 0.00 3.27 R
1921 1925 2.359975 CTCCCCAAGCACCGGAAC 60.360 66.667 9.46 0.0 0.00 3.62 R
2290 2294 2.499289 CACACTAGACAAGAGCCCATCT 59.501 50.000 0.00 0.0 41.27 2.90 R
3867 4001 0.320374 TTACCACTCCAAGGTCGCTG 59.680 55.000 0.00 0.0 40.54 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.146347 GCTAAAAAGCAGATTCTATAGGACGG 59.854 42.308 0.00 0.00 34.41 4.79
49 50 5.756347 GGTGTTTGACCTGCGATGTTATATA 59.244 40.000 0.00 0.00 42.25 0.86
52 53 3.833442 TGACCTGCGATGTTATATAGCG 58.167 45.455 0.00 0.00 0.00 4.26
55 56 3.987868 ACCTGCGATGTTATATAGCGTTG 59.012 43.478 2.43 2.43 0.00 4.10
63 64 6.516355 CGATGTTATATAGCGTTGAATGTTGC 59.484 38.462 0.75 0.00 0.00 4.17
67 68 1.610363 TAGCGTTGAATGTTGCCCAA 58.390 45.000 0.00 0.00 0.00 4.12
92 93 0.541392 TGGCGACATGTCCAATAGCT 59.459 50.000 20.03 0.00 33.40 3.32
117 118 5.656859 AGGTGTAGTAGAGATGTGCATGTTA 59.343 40.000 0.00 0.00 0.00 2.41
137 138 2.945080 AGATGGATATGTGGCCACAG 57.055 50.000 39.29 0.00 45.48 3.66
144 145 4.016444 GGATATGTGGCCACAGAAGAAAA 58.984 43.478 39.29 20.14 45.48 2.29
151 152 2.427506 GCCACAGAAGAAAAGATCGGT 58.572 47.619 0.00 0.00 0.00 4.69
156 157 3.265791 CAGAAGAAAAGATCGGTCCCAG 58.734 50.000 0.00 0.00 0.00 4.45
171 172 4.082190 CGGTCCCAGAATGATGATATACGT 60.082 45.833 0.00 0.00 39.69 3.57
179 180 7.094420 CCAGAATGATGATATACGTGAGAGAGT 60.094 40.741 0.00 0.00 39.69 3.24
186 187 5.297029 TGATATACGTGAGAGAGTTGAGTGG 59.703 44.000 0.00 0.00 0.00 4.00
189 190 0.315568 GTGAGAGAGTTGAGTGGCGT 59.684 55.000 0.00 0.00 0.00 5.68
192 193 0.889638 AGAGAGTTGAGTGGCGTCGA 60.890 55.000 0.00 0.00 0.00 4.20
215 218 2.693069 AGAGAAGCTTGTCCAACATCG 58.307 47.619 19.26 0.00 0.00 3.84
221 224 3.589988 AGCTTGTCCAACATCGTCTAAG 58.410 45.455 0.00 0.00 0.00 2.18
232 235 3.525537 CATCGTCTAAGATGGCTTGTGT 58.474 45.455 0.00 0.00 43.07 3.72
237 240 4.213270 CGTCTAAGATGGCTTGTGTTTCAA 59.787 41.667 0.00 0.00 35.56 2.69
238 241 5.106555 CGTCTAAGATGGCTTGTGTTTCAAT 60.107 40.000 0.00 0.00 35.56 2.57
244 247 1.461897 GGCTTGTGTTTCAATGCATGC 59.538 47.619 11.82 11.82 35.35 4.06
247 250 2.728690 TGTGTTTCAATGCATGCCTC 57.271 45.000 16.68 0.00 0.00 4.70
255 258 0.813184 AATGCATGCCTCCAGAAACG 59.187 50.000 16.68 0.00 0.00 3.60
257 260 2.042831 GCATGCCTCCAGAAACGCT 61.043 57.895 6.36 0.00 0.00 5.07
259 262 1.293924 CATGCCTCCAGAAACGCTAG 58.706 55.000 0.00 0.00 0.00 3.42
262 265 0.037232 GCCTCCAGAAACGCTAGTGT 60.037 55.000 2.24 2.24 0.00 3.55
266 269 4.441079 GCCTCCAGAAACGCTAGTGTATAA 60.441 45.833 9.84 0.00 0.00 0.98
268 271 6.281405 CCTCCAGAAACGCTAGTGTATAAAT 58.719 40.000 9.84 0.00 0.00 1.40
271 274 5.277345 CCAGAAACGCTAGTGTATAAATGGC 60.277 44.000 9.84 0.00 0.00 4.40
272 275 4.506654 AGAAACGCTAGTGTATAAATGGCG 59.493 41.667 9.84 2.09 45.31 5.69
279 282 5.178809 GCTAGTGTATAAATGGCGGTTAAGG 59.821 44.000 0.00 0.00 0.00 2.69
281 284 2.873472 TGTATAAATGGCGGTTAAGGCG 59.127 45.455 0.00 0.00 39.82 5.52
334 337 6.522946 AGACTAACCTAACAACAAAGGAGTC 58.477 40.000 0.00 0.00 37.16 3.36
401 404 3.334691 TCGCGAGGATGACAATTTTCTT 58.665 40.909 3.71 0.00 0.00 2.52
411 414 6.089954 GGATGACAATTTTCTTTAGCAAGCAC 59.910 38.462 0.00 0.00 0.00 4.40
413 416 5.181690 ACAATTTTCTTTAGCAAGCACGA 57.818 34.783 0.00 0.00 0.00 4.35
421 424 3.603158 TTAGCAAGCACGACATTCCTA 57.397 42.857 0.00 0.00 0.00 2.94
429 432 3.758554 AGCACGACATTCCTAGCAAAAAT 59.241 39.130 0.00 0.00 0.00 1.82
430 433 4.218417 AGCACGACATTCCTAGCAAAAATT 59.782 37.500 0.00 0.00 0.00 1.82
431 434 4.923281 GCACGACATTCCTAGCAAAAATTT 59.077 37.500 0.00 0.00 0.00 1.82
432 435 6.072175 AGCACGACATTCCTAGCAAAAATTTA 60.072 34.615 0.00 0.00 0.00 1.40
433 436 6.584563 GCACGACATTCCTAGCAAAAATTTAA 59.415 34.615 0.00 0.00 0.00 1.52
434 437 7.115663 GCACGACATTCCTAGCAAAAATTTAAA 59.884 33.333 0.00 0.00 0.00 1.52
435 438 8.973378 CACGACATTCCTAGCAAAAATTTAAAA 58.027 29.630 0.00 0.00 0.00 1.52
436 439 9.535878 ACGACATTCCTAGCAAAAATTTAAAAA 57.464 25.926 0.00 0.00 0.00 1.94
462 465 3.438216 TGAATTCCTCATGCTTGTCCA 57.562 42.857 2.27 0.00 0.00 4.02
463 466 3.765381 TGAATTCCTCATGCTTGTCCAA 58.235 40.909 2.27 0.00 0.00 3.53
464 467 3.507233 TGAATTCCTCATGCTTGTCCAAC 59.493 43.478 2.27 0.00 0.00 3.77
465 468 2.655090 TTCCTCATGCTTGTCCAACA 57.345 45.000 0.00 0.00 0.00 3.33
466 469 2.885135 TCCTCATGCTTGTCCAACAT 57.115 45.000 0.00 0.00 0.00 2.71
467 470 3.159213 TCCTCATGCTTGTCCAACATT 57.841 42.857 0.00 0.00 0.00 2.71
468 471 2.821378 TCCTCATGCTTGTCCAACATTG 59.179 45.455 0.00 0.00 0.00 2.82
469 472 2.559668 CCTCATGCTTGTCCAACATTGT 59.440 45.455 0.00 0.00 0.00 2.71
470 473 3.366679 CCTCATGCTTGTCCAACATTGTC 60.367 47.826 0.00 0.00 0.00 3.18
471 474 3.489355 TCATGCTTGTCCAACATTGTCT 58.511 40.909 0.00 0.00 0.00 3.41
472 475 4.650734 TCATGCTTGTCCAACATTGTCTA 58.349 39.130 0.00 0.00 0.00 2.59
473 476 5.069318 TCATGCTTGTCCAACATTGTCTAA 58.931 37.500 0.00 0.00 0.00 2.10
474 477 5.181811 TCATGCTTGTCCAACATTGTCTAAG 59.818 40.000 0.00 0.00 0.00 2.18
475 478 4.713553 TGCTTGTCCAACATTGTCTAAGA 58.286 39.130 0.00 0.00 0.00 2.10
476 479 5.316167 TGCTTGTCCAACATTGTCTAAGAT 58.684 37.500 0.00 0.00 0.00 2.40
477 480 5.181811 TGCTTGTCCAACATTGTCTAAGATG 59.818 40.000 0.00 0.00 0.00 2.90
478 481 5.392380 GCTTGTCCAACATTGTCTAAGATGG 60.392 44.000 0.00 0.00 0.00 3.51
479 482 5.241403 TGTCCAACATTGTCTAAGATGGT 57.759 39.130 3.53 0.00 0.00 3.55
480 483 5.630121 TGTCCAACATTGTCTAAGATGGTT 58.370 37.500 3.53 0.00 0.00 3.67
481 484 6.068010 TGTCCAACATTGTCTAAGATGGTTT 58.932 36.000 3.53 0.00 0.00 3.27
482 485 6.016360 TGTCCAACATTGTCTAAGATGGTTTG 60.016 38.462 3.53 0.00 0.00 2.93
483 486 6.016276 GTCCAACATTGTCTAAGATGGTTTGT 60.016 38.462 3.53 0.00 0.00 2.83
484 487 6.016360 TCCAACATTGTCTAAGATGGTTTGTG 60.016 38.462 3.53 0.00 0.00 3.33
485 488 6.239008 CCAACATTGTCTAAGATGGTTTGTGT 60.239 38.462 0.00 0.00 0.00 3.72
486 489 6.959639 ACATTGTCTAAGATGGTTTGTGTT 57.040 33.333 0.00 0.00 0.00 3.32
487 490 7.346751 ACATTGTCTAAGATGGTTTGTGTTT 57.653 32.000 0.00 0.00 0.00 2.83
488 491 7.425606 ACATTGTCTAAGATGGTTTGTGTTTC 58.574 34.615 0.00 0.00 0.00 2.78
489 492 7.068103 ACATTGTCTAAGATGGTTTGTGTTTCA 59.932 33.333 0.00 0.00 0.00 2.69
490 493 7.397892 TTGTCTAAGATGGTTTGTGTTTCAA 57.602 32.000 0.00 0.00 0.00 2.69
491 494 7.581213 TGTCTAAGATGGTTTGTGTTTCAAT 57.419 32.000 0.00 0.00 35.84 2.57
492 495 7.424803 TGTCTAAGATGGTTTGTGTTTCAATG 58.575 34.615 0.00 0.00 35.84 2.82
493 496 6.363357 GTCTAAGATGGTTTGTGTTTCAATGC 59.637 38.462 0.00 0.00 35.84 3.56
494 497 4.669206 AGATGGTTTGTGTTTCAATGCA 57.331 36.364 0.00 0.00 35.84 3.96
495 498 5.217978 AGATGGTTTGTGTTTCAATGCAT 57.782 34.783 0.00 0.00 35.84 3.96
496 499 4.992319 AGATGGTTTGTGTTTCAATGCATG 59.008 37.500 0.00 0.00 35.84 4.06
497 500 2.871022 TGGTTTGTGTTTCAATGCATGC 59.129 40.909 11.82 11.82 35.84 4.06
498 501 2.223845 GGTTTGTGTTTCAATGCATGCC 59.776 45.455 16.68 0.00 35.84 4.40
499 502 2.166821 TTGTGTTTCAATGCATGCCC 57.833 45.000 16.68 0.00 0.00 5.36
500 503 0.321021 TGTGTTTCAATGCATGCCCC 59.679 50.000 16.68 0.00 0.00 5.80
501 504 0.391528 GTGTTTCAATGCATGCCCCC 60.392 55.000 16.68 0.00 0.00 5.40
502 505 0.835115 TGTTTCAATGCATGCCCCCA 60.835 50.000 16.68 0.00 0.00 4.96
503 506 0.542805 GTTTCAATGCATGCCCCCAT 59.457 50.000 16.68 0.00 0.00 4.00
504 507 1.761784 GTTTCAATGCATGCCCCCATA 59.238 47.619 16.68 0.00 0.00 2.74
505 508 2.170187 GTTTCAATGCATGCCCCCATAA 59.830 45.455 16.68 0.00 0.00 1.90
506 509 2.171568 TCAATGCATGCCCCCATAAA 57.828 45.000 16.68 0.00 0.00 1.40
507 510 1.761784 TCAATGCATGCCCCCATAAAC 59.238 47.619 16.68 0.00 0.00 2.01
508 511 0.752054 AATGCATGCCCCCATAAACG 59.248 50.000 16.68 0.00 0.00 3.60
509 512 1.747325 ATGCATGCCCCCATAAACGC 61.747 55.000 16.68 0.00 0.00 4.84
510 513 2.127232 GCATGCCCCCATAAACGCT 61.127 57.895 6.36 0.00 0.00 5.07
511 514 0.821711 GCATGCCCCCATAAACGCTA 60.822 55.000 6.36 0.00 0.00 4.26
512 515 1.686355 CATGCCCCCATAAACGCTAA 58.314 50.000 0.00 0.00 0.00 3.09
513 516 2.238521 CATGCCCCCATAAACGCTAAT 58.761 47.619 0.00 0.00 0.00 1.73
514 517 1.686355 TGCCCCCATAAACGCTAATG 58.314 50.000 0.00 0.00 0.00 1.90
515 518 0.313987 GCCCCCATAAACGCTAATGC 59.686 55.000 0.00 0.00 0.00 3.56
516 519 1.686355 CCCCCATAAACGCTAATGCA 58.314 50.000 0.00 0.00 39.64 3.96
517 520 2.238521 CCCCCATAAACGCTAATGCAT 58.761 47.619 0.00 0.00 39.64 3.96
518 521 3.417101 CCCCCATAAACGCTAATGCATA 58.583 45.455 0.00 0.00 39.64 3.14
519 522 3.823873 CCCCCATAAACGCTAATGCATAA 59.176 43.478 0.00 0.00 39.64 1.90
520 523 4.279671 CCCCCATAAACGCTAATGCATAAA 59.720 41.667 0.00 0.00 39.64 1.40
521 524 5.047377 CCCCCATAAACGCTAATGCATAAAT 60.047 40.000 0.00 0.00 39.64 1.40
522 525 5.863397 CCCCATAAACGCTAATGCATAAATG 59.137 40.000 0.00 0.00 39.64 2.32
523 526 5.863397 CCCATAAACGCTAATGCATAAATGG 59.137 40.000 0.00 4.83 39.64 3.16
524 527 5.345741 CCATAAACGCTAATGCATAAATGGC 59.654 40.000 0.00 0.00 39.64 4.40
525 528 2.686558 ACGCTAATGCATAAATGGCG 57.313 45.000 21.41 21.41 45.31 5.69
526 529 1.266718 ACGCTAATGCATAAATGGCGG 59.733 47.619 25.02 11.85 44.34 6.13
527 530 1.266718 CGCTAATGCATAAATGGCGGT 59.733 47.619 16.97 0.00 39.64 5.68
528 531 2.287547 CGCTAATGCATAAATGGCGGTT 60.288 45.455 16.97 0.00 39.64 4.44
529 532 3.058570 CGCTAATGCATAAATGGCGGTTA 60.059 43.478 16.97 0.00 39.64 2.85
530 533 4.555708 CGCTAATGCATAAATGGCGGTTAA 60.556 41.667 16.97 0.00 39.64 2.01
531 534 4.917415 GCTAATGCATAAATGGCGGTTAAG 59.083 41.667 0.00 0.00 39.41 1.85
532 535 5.278266 GCTAATGCATAAATGGCGGTTAAGA 60.278 40.000 0.00 0.00 39.41 2.10
533 536 4.568152 ATGCATAAATGGCGGTTAAGAC 57.432 40.909 0.00 0.00 0.00 3.01
534 537 2.353269 TGCATAAATGGCGGTTAAGACG 59.647 45.455 0.00 0.00 0.00 4.18
546 549 5.464965 CGGTTAAGACGCATTGATAACTT 57.535 39.130 0.00 0.00 0.00 2.66
547 550 5.490213 CGGTTAAGACGCATTGATAACTTC 58.510 41.667 0.00 0.00 0.00 3.01
548 551 5.062934 CGGTTAAGACGCATTGATAACTTCA 59.937 40.000 0.00 0.00 0.00 3.02
561 564 6.918067 TGATAACTTCAAGAGAGGTTGAGA 57.082 37.500 0.00 0.00 43.07 3.27
562 565 7.487822 TGATAACTTCAAGAGAGGTTGAGAT 57.512 36.000 0.00 0.00 43.07 2.75
563 566 8.595362 TGATAACTTCAAGAGAGGTTGAGATA 57.405 34.615 0.00 0.00 43.07 1.98
564 567 9.035890 TGATAACTTCAAGAGAGGTTGAGATAA 57.964 33.333 0.00 0.00 43.07 1.75
565 568 9.877178 GATAACTTCAAGAGAGGTTGAGATAAA 57.123 33.333 0.00 0.00 43.07 1.40
566 569 7.971183 AACTTCAAGAGAGGTTGAGATAAAC 57.029 36.000 0.00 0.00 41.83 2.01
567 570 7.309770 ACTTCAAGAGAGGTTGAGATAAACT 57.690 36.000 0.00 0.00 37.72 2.66
568 571 8.423906 ACTTCAAGAGAGGTTGAGATAAACTA 57.576 34.615 0.00 0.00 37.72 2.24
569 572 8.871125 ACTTCAAGAGAGGTTGAGATAAACTAA 58.129 33.333 0.00 0.00 37.72 2.24
570 573 9.145865 CTTCAAGAGAGGTTGAGATAAACTAAC 57.854 37.037 0.00 0.00 37.72 2.34
571 574 7.612677 TCAAGAGAGGTTGAGATAAACTAACC 58.387 38.462 0.00 0.00 42.19 2.85
579 582 8.611654 GGTTGAGATAAACTAACCTAACAACA 57.388 34.615 0.00 0.00 39.51 3.33
580 583 9.059260 GGTTGAGATAAACTAACCTAACAACAA 57.941 33.333 0.00 0.00 39.51 2.83
583 586 9.280174 TGAGATAAACTAACCTAACAACAAAGG 57.720 33.333 0.00 0.00 38.93 3.11
584 587 9.498176 GAGATAAACTAACCTAACAACAAAGGA 57.502 33.333 0.00 0.00 36.66 3.36
585 588 9.503399 AGATAAACTAACCTAACAACAAAGGAG 57.497 33.333 0.00 0.00 36.66 3.69
586 589 9.281371 GATAAACTAACCTAACAACAAAGGAGT 57.719 33.333 0.00 0.00 36.66 3.85
587 590 7.563888 AAACTAACCTAACAACAAAGGAGTC 57.436 36.000 0.00 0.00 36.66 3.36
588 591 6.496144 ACTAACCTAACAACAAAGGAGTCT 57.504 37.500 0.00 0.00 36.66 3.24
589 592 6.289064 ACTAACCTAACAACAAAGGAGTCTG 58.711 40.000 0.00 0.00 36.66 3.51
590 593 4.772886 ACCTAACAACAAAGGAGTCTGT 57.227 40.909 0.00 0.00 36.66 3.41
591 594 5.881923 ACCTAACAACAAAGGAGTCTGTA 57.118 39.130 0.00 0.00 36.66 2.74
592 595 6.435292 ACCTAACAACAAAGGAGTCTGTAT 57.565 37.500 0.00 0.00 36.66 2.29
593 596 6.231211 ACCTAACAACAAAGGAGTCTGTATG 58.769 40.000 0.00 0.00 36.66 2.39
594 597 6.183361 ACCTAACAACAAAGGAGTCTGTATGT 60.183 38.462 0.00 0.00 36.66 2.29
595 598 6.710744 CCTAACAACAAAGGAGTCTGTATGTT 59.289 38.462 12.02 12.02 34.58 2.71
596 599 7.876068 CCTAACAACAAAGGAGTCTGTATGTTA 59.124 37.037 12.58 12.58 34.58 2.41
597 600 9.436957 CTAACAACAAAGGAGTCTGTATGTTAT 57.563 33.333 13.08 6.71 33.60 1.89
598 601 7.907214 ACAACAAAGGAGTCTGTATGTTATC 57.093 36.000 0.00 0.00 30.48 1.75
599 602 7.450074 ACAACAAAGGAGTCTGTATGTTATCA 58.550 34.615 0.00 0.00 30.48 2.15
600 603 7.387948 ACAACAAAGGAGTCTGTATGTTATCAC 59.612 37.037 0.00 0.00 30.48 3.06
601 604 6.100004 ACAAAGGAGTCTGTATGTTATCACG 58.900 40.000 0.00 0.00 0.00 4.35
602 605 6.071560 ACAAAGGAGTCTGTATGTTATCACGA 60.072 38.462 0.00 0.00 0.00 4.35
603 606 5.759506 AGGAGTCTGTATGTTATCACGAG 57.240 43.478 0.00 0.00 0.00 4.18
604 607 4.580995 AGGAGTCTGTATGTTATCACGAGG 59.419 45.833 0.00 0.00 0.00 4.63
605 608 4.579340 GGAGTCTGTATGTTATCACGAGGA 59.421 45.833 0.00 0.00 0.00 3.71
606 609 5.241949 GGAGTCTGTATGTTATCACGAGGAT 59.758 44.000 0.00 0.00 40.14 3.24
607 610 6.078202 AGTCTGTATGTTATCACGAGGATG 57.922 41.667 0.00 0.00 36.72 3.51
608 611 5.828328 AGTCTGTATGTTATCACGAGGATGA 59.172 40.000 0.00 0.00 36.72 2.92
609 612 5.915758 GTCTGTATGTTATCACGAGGATGAC 59.084 44.000 8.86 8.86 41.56 3.06
616 619 7.072177 TGTTATCACGAGGATGACAATTTTC 57.928 36.000 13.76 0.00 46.05 2.29
617 620 6.878923 TGTTATCACGAGGATGACAATTTTCT 59.121 34.615 13.76 0.00 46.05 2.52
618 621 7.390440 TGTTATCACGAGGATGACAATTTTCTT 59.610 33.333 13.76 0.00 46.05 2.52
619 622 6.824305 ATCACGAGGATGACAATTTTCTTT 57.176 33.333 0.00 0.00 34.06 2.52
620 623 7.921786 ATCACGAGGATGACAATTTTCTTTA 57.078 32.000 0.00 0.00 34.06 1.85
621 624 7.364522 TCACGAGGATGACAATTTTCTTTAG 57.635 36.000 0.00 0.00 0.00 1.85
622 625 6.024049 CACGAGGATGACAATTTTCTTTAGC 58.976 40.000 0.00 0.00 0.00 3.09
623 626 5.705441 ACGAGGATGACAATTTTCTTTAGCA 59.295 36.000 0.00 0.00 0.00 3.49
624 627 6.206634 ACGAGGATGACAATTTTCTTTAGCAA 59.793 34.615 0.00 0.00 0.00 3.91
625 628 6.744537 CGAGGATGACAATTTTCTTTAGCAAG 59.255 38.462 0.00 0.00 0.00 4.01
626 629 6.393171 AGGATGACAATTTTCTTTAGCAAGC 58.607 36.000 0.00 0.00 0.00 4.01
627 630 6.015180 AGGATGACAATTTTCTTTAGCAAGCA 60.015 34.615 0.00 0.00 0.00 3.91
628 631 6.089954 GGATGACAATTTTCTTTAGCAAGCAC 59.910 38.462 0.00 0.00 0.00 4.40
629 632 4.975502 TGACAATTTTCTTTAGCAAGCACG 59.024 37.500 0.00 0.00 0.00 5.34
630 633 5.181690 ACAATTTTCTTTAGCAAGCACGA 57.818 34.783 0.00 0.00 0.00 4.35
631 634 4.976116 ACAATTTTCTTTAGCAAGCACGAC 59.024 37.500 0.00 0.00 0.00 4.34
632 635 4.829064 ATTTTCTTTAGCAAGCACGACA 57.171 36.364 0.00 0.00 0.00 4.35
633 636 4.829064 TTTTCTTTAGCAAGCACGACAT 57.171 36.364 0.00 0.00 0.00 3.06
634 637 4.829064 TTTCTTTAGCAAGCACGACATT 57.171 36.364 0.00 0.00 0.00 2.71
635 638 4.404507 TTCTTTAGCAAGCACGACATTC 57.595 40.909 0.00 0.00 0.00 2.67
636 639 2.742053 TCTTTAGCAAGCACGACATTCC 59.258 45.455 0.00 0.00 0.00 3.01
637 640 2.472695 TTAGCAAGCACGACATTCCT 57.527 45.000 0.00 0.00 0.00 3.36
638 641 3.603158 TTAGCAAGCACGACATTCCTA 57.397 42.857 0.00 0.00 0.00 2.94
639 642 2.015736 AGCAAGCACGACATTCCTAG 57.984 50.000 0.00 0.00 0.00 3.02
640 643 0.375106 GCAAGCACGACATTCCTAGC 59.625 55.000 0.00 0.00 0.00 3.42
641 644 1.725641 CAAGCACGACATTCCTAGCA 58.274 50.000 0.00 0.00 0.00 3.49
642 645 2.076100 CAAGCACGACATTCCTAGCAA 58.924 47.619 0.00 0.00 0.00 3.91
643 646 2.472695 AGCACGACATTCCTAGCAAA 57.527 45.000 0.00 0.00 0.00 3.68
644 647 2.778299 AGCACGACATTCCTAGCAAAA 58.222 42.857 0.00 0.00 0.00 2.44
645 648 3.146066 AGCACGACATTCCTAGCAAAAA 58.854 40.909 0.00 0.00 0.00 1.94
646 649 3.758554 AGCACGACATTCCTAGCAAAAAT 59.241 39.130 0.00 0.00 0.00 1.82
686 689 5.431420 TCGTCATGCTTGCTAAAAGAAAA 57.569 34.783 0.00 0.00 0.00 2.29
693 696 8.965819 TCATGCTTGCTAAAAGAAAATACCATA 58.034 29.630 0.00 0.00 0.00 2.74
706 709 6.367969 AGAAAATACCATACTCGTGACAACAC 59.632 38.462 0.00 0.00 42.88 3.32
712 715 5.992829 ACCATACTCGTGACAACACAATTTA 59.007 36.000 0.00 0.00 46.20 1.40
717 720 7.347508 ACTCGTGACAACACAATTTACTATC 57.652 36.000 0.00 0.00 46.20 2.08
722 725 7.237173 GTGACAACACAATTTACTATCTGAGC 58.763 38.462 0.00 0.00 45.32 4.26
750 753 1.102154 TGCCATGCTCATAAAACCGG 58.898 50.000 0.00 0.00 0.00 5.28
753 756 1.682854 CCATGCTCATAAAACCGGCAT 59.317 47.619 0.00 0.00 43.19 4.40
755 758 3.374745 CATGCTCATAAAACCGGCATTC 58.625 45.455 0.00 0.00 40.93 2.67
774 777 3.906014 TCGATTTGCAACGAAATCCAA 57.094 38.095 9.45 0.00 38.58 3.53
775 778 4.230314 TCGATTTGCAACGAAATCCAAA 57.770 36.364 9.45 0.00 38.58 3.28
816 819 6.713276 TCATAGACCCGGATTTTAAACTTCA 58.287 36.000 0.73 0.00 0.00 3.02
820 823 3.824443 ACCCGGATTTTAAACTTCACCTG 59.176 43.478 0.73 0.00 0.00 4.00
889 893 5.645067 TGTGATTTCAGAATGGTTAGCTGAG 59.355 40.000 0.00 0.00 39.56 3.35
919 923 3.004734 CACTAAAACCCTGCAAACCTCTG 59.995 47.826 0.00 0.00 0.00 3.35
920 924 2.452600 AAAACCCTGCAAACCTCTGA 57.547 45.000 0.00 0.00 0.00 3.27
921 925 2.452600 AAACCCTGCAAACCTCTGAA 57.547 45.000 0.00 0.00 0.00 3.02
922 926 2.683211 AACCCTGCAAACCTCTGAAT 57.317 45.000 0.00 0.00 0.00 2.57
923 927 2.683211 ACCCTGCAAACCTCTGAATT 57.317 45.000 0.00 0.00 0.00 2.17
924 928 2.962859 ACCCTGCAAACCTCTGAATTT 58.037 42.857 0.00 0.00 0.00 1.82
925 929 2.893489 ACCCTGCAAACCTCTGAATTTC 59.107 45.455 0.00 0.00 0.00 2.17
926 930 3.160269 CCCTGCAAACCTCTGAATTTCT 58.840 45.455 0.00 0.00 0.00 2.52
927 931 3.575687 CCCTGCAAACCTCTGAATTTCTT 59.424 43.478 0.00 0.00 0.00 2.52
928 932 4.321527 CCCTGCAAACCTCTGAATTTCTTC 60.322 45.833 0.00 0.00 0.00 2.87
929 933 4.522022 CCTGCAAACCTCTGAATTTCTTCT 59.478 41.667 0.00 0.00 32.29 2.85
930 934 5.010415 CCTGCAAACCTCTGAATTTCTTCTT 59.990 40.000 0.00 0.00 32.29 2.52
931 935 6.462067 CCTGCAAACCTCTGAATTTCTTCTTT 60.462 38.462 0.00 0.00 32.29 2.52
932 936 6.877236 TGCAAACCTCTGAATTTCTTCTTTT 58.123 32.000 0.00 0.00 32.29 2.27
933 937 8.006298 TGCAAACCTCTGAATTTCTTCTTTTA 57.994 30.769 0.00 0.00 32.29 1.52
934 938 8.474025 TGCAAACCTCTGAATTTCTTCTTTTAA 58.526 29.630 0.00 0.00 32.29 1.52
935 939 9.481340 GCAAACCTCTGAATTTCTTCTTTTAAT 57.519 29.630 0.00 0.00 32.29 1.40
947 951 7.478520 TTCTTCTTTTAATATACTCCTGCGC 57.521 36.000 0.00 0.00 0.00 6.09
948 952 5.989777 TCTTCTTTTAATATACTCCTGCGCC 59.010 40.000 4.18 0.00 0.00 6.53
949 953 4.304110 TCTTTTAATATACTCCTGCGCCG 58.696 43.478 4.18 0.00 0.00 6.46
950 954 2.074547 TTAATATACTCCTGCGCCGC 57.925 50.000 4.18 0.00 0.00 6.53
951 955 0.109458 TAATATACTCCTGCGCCGCG 60.109 55.000 8.83 8.83 0.00 6.46
964 968 3.449227 CCGCGCCACTCTCCACTA 61.449 66.667 0.00 0.00 0.00 2.74
965 969 2.571757 CGCGCCACTCTCCACTAA 59.428 61.111 0.00 0.00 0.00 2.24
966 970 1.080093 CGCGCCACTCTCCACTAAA 60.080 57.895 0.00 0.00 0.00 1.85
970 974 1.270094 CGCCACTCTCCACTAAACACA 60.270 52.381 0.00 0.00 0.00 3.72
1023 1027 8.676401 CCCAAAACATTTTGTCTGAATTTCTTT 58.324 29.630 14.34 0.00 44.52 2.52
1024 1028 9.493206 CCAAAACATTTTGTCTGAATTTCTTTG 57.507 29.630 14.34 0.00 44.52 2.77
1027 1031 6.585416 ACATTTTGTCTGAATTTCTTTGGCT 58.415 32.000 0.00 0.00 0.00 4.75
1032 1036 3.573967 GTCTGAATTTCTTTGGCTTCCCA 59.426 43.478 0.00 0.00 40.06 4.37
1110 1114 0.249657 GCCAATCTCTCAGCCCGTAG 60.250 60.000 0.00 0.00 0.00 3.51
1138 1142 1.165270 GATCCAACCTTTCCACCGTG 58.835 55.000 0.00 0.00 0.00 4.94
1555 1559 3.655031 TTCGTGCAAATGCCGCGT 61.655 55.556 4.92 0.00 41.18 6.01
1921 1925 0.240945 GGACTTTGGTTCATGGTGCG 59.759 55.000 0.00 0.00 0.00 5.34
2037 2041 5.641636 TGCTGTATTGCTTATCAAAGAACGA 59.358 36.000 0.00 0.00 38.34 3.85
2095 2099 3.838903 TGAAAACTAGGGGTCTTCTCCTC 59.161 47.826 0.00 0.00 34.75 3.71
2104 2108 1.205893 GGTCTTCTCCTCGACAATGCT 59.794 52.381 0.00 0.00 31.88 3.79
2290 2294 5.295787 CCACTATTTAGAGCGCATGGTTTTA 59.704 40.000 11.47 0.00 0.00 1.52
2386 2390 5.826643 AGGGCAGTGGAGATTATAAAACAA 58.173 37.500 0.00 0.00 0.00 2.83
2479 2483 3.891366 GGGATGTACATAATGCAAAGGCT 59.109 43.478 8.71 0.00 41.91 4.58
2489 2493 6.209391 ACATAATGCAAAGGCTGTTCTTAAGT 59.791 34.615 1.63 0.00 41.91 2.24
2501 2505 6.317857 GCTGTTCTTAAGTTGCTTATGGAAG 58.682 40.000 1.63 0.00 35.60 3.46
2566 2570 2.264124 GCTATGCCATGCCCATCAG 58.736 57.895 0.96 0.89 0.00 2.90
2665 2669 2.497628 CGCGCGCTTTGTTCAGTC 60.498 61.111 30.48 0.00 0.00 3.51
2812 2816 7.307751 GCTCGTAGTATTTTTAATGCCATGCTA 60.308 37.037 0.00 0.00 0.00 3.49
2866 2870 5.012239 TGCAACATCCTGATTAAAGCTCTT 58.988 37.500 0.00 0.00 0.00 2.85
2877 2881 8.084073 CCTGATTAAAGCTCTTTGTGATGAAAA 58.916 33.333 5.21 0.00 34.23 2.29
2878 2882 9.125906 CTGATTAAAGCTCTTTGTGATGAAAAG 57.874 33.333 5.21 0.00 36.22 2.27
3126 3130 6.649141 GTGTGAGTTGTGATTTGGTATCTACA 59.351 38.462 0.00 0.00 0.00 2.74
3137 3141 6.633500 TTTGGTATCTACATGCTATTTGGC 57.367 37.500 0.00 0.00 0.00 4.52
3148 3152 5.069914 ACATGCTATTTGGCACATGAATGAT 59.930 36.000 18.46 0.00 45.36 2.45
3179 3183 1.884579 CTGCAATGAAGGCTCACAACT 59.115 47.619 0.00 0.00 33.30 3.16
3213 3217 2.256117 AAGGTGCAGTAGACCAACAC 57.744 50.000 0.00 0.00 35.76 3.32
3271 3275 6.829811 TGATGATATTTCATTTGTCCTGCTCA 59.170 34.615 0.00 0.00 42.73 4.26
3285 3289 5.112686 GTCCTGCTCATTTTCTTATCGAGT 58.887 41.667 0.00 0.00 0.00 4.18
3286 3290 6.127451 TGTCCTGCTCATTTTCTTATCGAGTA 60.127 38.462 0.00 0.00 0.00 2.59
3288 3292 7.277981 GTCCTGCTCATTTTCTTATCGAGTAAA 59.722 37.037 0.00 0.00 0.00 2.01
3290 3294 7.278868 CCTGCTCATTTTCTTATCGAGTAAAGT 59.721 37.037 0.00 0.00 29.72 2.66
3336 3340 4.533707 AGATGAATCACCTGGAACTTCTCA 59.466 41.667 0.00 0.00 0.00 3.27
3354 3483 0.179156 CAGCGCCCATTGCTTTGTAG 60.179 55.000 2.29 0.00 41.72 2.74
3389 3518 7.289317 AGGAATGATATGGATTTGCACATTTCT 59.711 33.333 0.00 0.00 30.40 2.52
3486 3615 5.750352 AAGGGATGAACTTCATGCAAAAT 57.250 34.783 20.97 5.12 45.52 1.82
3487 3616 6.855763 AAGGGATGAACTTCATGCAAAATA 57.144 33.333 20.97 0.00 45.52 1.40
3528 3657 3.119101 TGCGAATACTGGAGAGGAAAGAC 60.119 47.826 0.00 0.00 0.00 3.01
3541 3670 2.084546 GGAAAGACCGCAAGCTAACAT 58.915 47.619 0.00 0.00 0.00 2.71
3646 3775 9.772973 GGAAATTTAGTTTGAAACAAAGGGTAT 57.227 29.630 11.02 0.00 0.00 2.73
3686 3815 6.100004 AGTCCTCAGTAAACATGTAACATCG 58.900 40.000 0.00 0.00 0.00 3.84
3694 3823 1.810151 ACATGTAACATCGGGTGCAAC 59.190 47.619 0.00 0.00 0.00 4.17
3704 3833 3.916359 TCGGGTGCAACATTCCTATAA 57.084 42.857 3.06 0.00 39.98 0.98
3747 3876 3.360249 AAAGCTGCTCACACACAAATC 57.640 42.857 1.00 0.00 0.00 2.17
3761 3890 0.036010 CAAATCTGGCCGTGGAGACT 60.036 55.000 0.00 0.00 0.00 3.24
3777 3906 4.040339 TGGAGACTGTGATGCTTTCTGTAA 59.960 41.667 0.00 0.00 0.00 2.41
3779 3908 5.645497 GGAGACTGTGATGCTTTCTGTAATT 59.355 40.000 0.00 0.00 0.00 1.40
3805 3939 3.181329 TGGCAGAAGTATCCCAAGAAGA 58.819 45.455 0.00 0.00 0.00 2.87
3812 3946 2.769095 AGTATCCCAAGAAGAGCAGTCC 59.231 50.000 0.00 0.00 0.00 3.85
3820 3954 1.474879 AGAAGAGCAGTCCGTAGCTTC 59.525 52.381 0.00 0.00 42.04 3.86
3837 3971 6.018751 CGTAGCTTCATATTATGTGTGTTGCT 60.019 38.462 0.00 7.79 34.91 3.91
3867 4001 3.799281 TTGTGCCTTGGCATATTAAGC 57.201 42.857 17.86 3.57 0.00 3.09
3892 4026 4.456566 GCGACCTTGGAGTGGTAATAAAAA 59.543 41.667 0.00 0.00 38.03 1.94
3944 4102 9.212641 TCTCATTGAAGATGAAGACTTGTTAAG 57.787 33.333 0.00 0.00 0.00 1.85
4026 4185 2.780065 TGTGTGCAAATGCTGTTCTC 57.220 45.000 6.97 0.00 42.66 2.87
4027 4186 1.337703 TGTGTGCAAATGCTGTTCTCC 59.662 47.619 6.97 0.00 42.66 3.71
4063 4222 5.375417 TTTCACATCATGCAAACTCGATT 57.625 34.783 0.00 0.00 0.00 3.34
4067 4226 3.181503 ACATCATGCAAACTCGATTCTGC 60.182 43.478 0.00 0.00 35.32 4.26
4075 4234 0.387202 ACTCGATTCTGCGGAGGATG 59.613 55.000 0.79 0.00 0.00 3.51
4100 4259 3.181429 TGCTTCCAAATCCTCCTTGAGTT 60.181 43.478 0.00 0.00 0.00 3.01
4138 4297 3.136123 CCCAACAGCGCTCCATGG 61.136 66.667 20.51 20.51 0.00 3.66
4144 4303 2.104859 CAGCGCTCCATGGTGACTG 61.105 63.158 17.98 17.73 36.99 3.51
4169 4328 1.378514 CCGGTCATGGGGGAGTTTG 60.379 63.158 0.00 0.00 0.00 2.93
4195 4355 2.674852 GTGAATTCTCATCGCTGCTCAA 59.325 45.455 7.05 0.00 33.05 3.02
4210 4370 3.620488 TGCTCAACTTCTGTTCAACCTT 58.380 40.909 0.00 0.00 33.52 3.50
4227 4387 0.389757 CTTACGGGGGCTAGCTTCTC 59.610 60.000 15.72 6.55 0.00 2.87
4335 4495 0.724549 TAACGCCGATTCACATGTGC 59.275 50.000 21.38 7.25 0.00 4.57
4401 4561 5.703130 TGTTGCAGTTGTATATACAGTTGCA 59.297 36.000 31.57 31.57 46.14 4.08
4404 4564 7.389803 TGCAGTTGTATATACAGTTGCAATT 57.610 32.000 32.32 11.10 45.52 2.32
4612 4777 7.610305 TGGACCTGAACCTGTTCTTTATTTATC 59.390 37.037 11.03 0.00 40.14 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.567397 ACACCGTCCTATAGAATCTGCT 58.433 45.455 0.00 0.00 0.00 4.24
9 10 4.323553 AACACCGTCCTATAGAATCTGC 57.676 45.455 0.00 0.00 0.00 4.26
10 11 5.749109 GTCAAACACCGTCCTATAGAATCTG 59.251 44.000 0.00 0.00 0.00 2.90
12 13 5.048507 GGTCAAACACCGTCCTATAGAATC 58.951 45.833 0.00 0.00 34.56 2.52
26 27 5.734855 ATATAACATCGCAGGTCAAACAC 57.265 39.130 0.00 0.00 0.00 3.32
49 50 0.031994 GTTGGGCAACATTCAACGCT 59.968 50.000 0.00 0.00 40.84 5.07
52 53 4.690280 CCATTTAGTTGGGCAACATTCAAC 59.310 41.667 0.00 0.00 43.47 3.18
55 56 3.261580 GCCATTTAGTTGGGCAACATTC 58.738 45.455 0.00 0.00 46.92 2.67
63 64 2.091541 ACATGTCGCCATTTAGTTGGG 58.908 47.619 0.00 0.00 37.24 4.12
67 68 2.779755 TGGACATGTCGCCATTTAGT 57.220 45.000 19.33 0.00 0.00 2.24
85 86 7.589395 CACATCTCTACTACACCTAGCTATTG 58.411 42.308 0.00 0.00 0.00 1.90
92 93 5.201243 ACATGCACATCTCTACTACACCTA 58.799 41.667 0.00 0.00 0.00 3.08
117 118 2.779430 TCTGTGGCCACATATCCATCTT 59.221 45.455 37.66 0.00 41.01 2.40
137 138 3.611766 TCTGGGACCGATCTTTTCTTC 57.388 47.619 0.00 0.00 0.00 2.87
144 145 2.682594 TCATCATTCTGGGACCGATCT 58.317 47.619 0.00 0.00 0.00 2.75
151 152 6.010219 TCTCACGTATATCATCATTCTGGGA 58.990 40.000 0.00 0.00 0.00 4.37
156 157 8.293157 TCAACTCTCTCACGTATATCATCATTC 58.707 37.037 0.00 0.00 0.00 2.67
171 172 0.598562 GACGCCACTCAACTCTCTCA 59.401 55.000 0.00 0.00 0.00 3.27
179 180 2.089201 TCTCTAATCGACGCCACTCAA 58.911 47.619 0.00 0.00 0.00 3.02
186 187 2.531206 ACAAGCTTCTCTAATCGACGC 58.469 47.619 0.00 0.00 0.00 5.19
189 190 4.021456 TGTTGGACAAGCTTCTCTAATCGA 60.021 41.667 3.96 0.00 0.00 3.59
192 193 4.872691 CGATGTTGGACAAGCTTCTCTAAT 59.127 41.667 3.96 0.00 0.00 1.73
215 218 5.689383 TTGAAACACAAGCCATCTTAGAC 57.311 39.130 0.00 0.00 34.20 2.59
221 224 3.029320 TGCATTGAAACACAAGCCATC 57.971 42.857 0.00 0.00 42.02 3.51
224 227 1.461897 GCATGCATTGAAACACAAGCC 59.538 47.619 14.21 0.00 42.02 4.35
226 229 2.991190 GAGGCATGCATTGAAACACAAG 59.009 45.455 21.36 0.00 42.02 3.16
232 235 2.219080 TCTGGAGGCATGCATTGAAA 57.781 45.000 21.36 0.00 0.00 2.69
237 240 1.660560 GCGTTTCTGGAGGCATGCAT 61.661 55.000 21.36 13.78 0.00 3.96
238 241 2.334946 GCGTTTCTGGAGGCATGCA 61.335 57.895 21.36 0.00 0.00 3.96
244 247 3.802948 ATACACTAGCGTTTCTGGAGG 57.197 47.619 0.00 0.00 0.00 4.30
247 250 5.277345 GCCATTTATACACTAGCGTTTCTGG 60.277 44.000 0.00 0.00 0.00 3.86
255 258 5.178809 CCTTAACCGCCATTTATACACTAGC 59.821 44.000 0.00 0.00 0.00 3.42
257 260 5.058490 GCCTTAACCGCCATTTATACACTA 58.942 41.667 0.00 0.00 0.00 2.74
259 262 3.303526 CGCCTTAACCGCCATTTATACAC 60.304 47.826 0.00 0.00 0.00 2.90
262 265 1.874872 GCGCCTTAACCGCCATTTATA 59.125 47.619 0.00 0.00 45.30 0.98
271 274 2.598907 CGTTATCAATGCGCCTTAACCG 60.599 50.000 4.18 0.00 0.00 4.44
272 275 2.353579 ACGTTATCAATGCGCCTTAACC 59.646 45.455 4.18 0.00 0.00 2.85
279 282 2.603110 TCTCTTGACGTTATCAATGCGC 59.397 45.455 0.00 0.00 46.37 6.09
281 284 4.184629 ACCTCTCTTGACGTTATCAATGC 58.815 43.478 0.00 0.00 46.37 3.56
299 302 7.642082 TGTTAGGTTAGTCTATCTCAACCTC 57.358 40.000 8.07 0.00 46.05 3.85
304 307 8.311836 CCTTTGTTGTTAGGTTAGTCTATCTCA 58.688 37.037 0.00 0.00 0.00 3.27
308 311 8.203681 ACTCCTTTGTTGTTAGGTTAGTCTAT 57.796 34.615 0.00 0.00 33.15 1.98
324 327 7.540474 TGTATCTCTTTACAGACTCCTTTGT 57.460 36.000 0.00 0.00 0.00 2.83
401 404 2.472695 AGGAATGTCGTGCTTGCTAA 57.527 45.000 0.00 0.00 0.00 3.09
442 445 3.438216 TGGACAAGCATGAGGAATTCA 57.562 42.857 7.93 0.00 40.85 2.57
443 446 3.507233 TGTTGGACAAGCATGAGGAATTC 59.493 43.478 0.00 0.00 0.00 2.17
444 447 3.499338 TGTTGGACAAGCATGAGGAATT 58.501 40.909 0.00 0.00 0.00 2.17
445 448 3.159213 TGTTGGACAAGCATGAGGAAT 57.841 42.857 0.00 0.00 0.00 3.01
446 449 2.655090 TGTTGGACAAGCATGAGGAA 57.345 45.000 0.00 0.00 0.00 3.36
447 450 2.821378 CAATGTTGGACAAGCATGAGGA 59.179 45.455 0.00 0.00 0.00 3.71
448 451 2.559668 ACAATGTTGGACAAGCATGAGG 59.440 45.455 0.00 0.00 0.00 3.86
449 452 3.504906 AGACAATGTTGGACAAGCATGAG 59.495 43.478 0.00 0.00 0.00 2.90
450 453 3.489355 AGACAATGTTGGACAAGCATGA 58.511 40.909 0.00 0.00 0.00 3.07
451 454 3.928727 AGACAATGTTGGACAAGCATG 57.071 42.857 0.00 0.00 0.00 4.06
452 455 5.316167 TCTTAGACAATGTTGGACAAGCAT 58.684 37.500 0.00 0.00 0.00 3.79
453 456 4.713553 TCTTAGACAATGTTGGACAAGCA 58.286 39.130 0.00 0.00 0.00 3.91
454 457 5.392380 CCATCTTAGACAATGTTGGACAAGC 60.392 44.000 0.00 0.00 0.00 4.01
455 458 5.707298 ACCATCTTAGACAATGTTGGACAAG 59.293 40.000 6.54 0.00 0.00 3.16
456 459 5.630121 ACCATCTTAGACAATGTTGGACAA 58.370 37.500 6.54 0.00 0.00 3.18
457 460 5.241403 ACCATCTTAGACAATGTTGGACA 57.759 39.130 6.54 0.00 0.00 4.02
458 461 6.016276 ACAAACCATCTTAGACAATGTTGGAC 60.016 38.462 6.54 0.00 0.00 4.02
459 462 6.016360 CACAAACCATCTTAGACAATGTTGGA 60.016 38.462 6.54 0.00 0.00 3.53
460 463 6.151691 CACAAACCATCTTAGACAATGTTGG 58.848 40.000 0.00 0.00 0.00 3.77
461 464 6.738114 ACACAAACCATCTTAGACAATGTTG 58.262 36.000 0.00 0.00 0.00 3.33
462 465 6.959639 ACACAAACCATCTTAGACAATGTT 57.040 33.333 0.00 0.00 0.00 2.71
463 466 6.959639 AACACAAACCATCTTAGACAATGT 57.040 33.333 0.00 0.00 0.00 2.71
464 467 7.424803 TGAAACACAAACCATCTTAGACAATG 58.575 34.615 0.00 0.00 0.00 2.82
465 468 7.581213 TGAAACACAAACCATCTTAGACAAT 57.419 32.000 0.00 0.00 0.00 2.71
466 469 7.397892 TTGAAACACAAACCATCTTAGACAA 57.602 32.000 0.00 0.00 35.39 3.18
467 470 7.424803 CATTGAAACACAAACCATCTTAGACA 58.575 34.615 0.00 0.00 42.03 3.41
468 471 6.363357 GCATTGAAACACAAACCATCTTAGAC 59.637 38.462 0.00 0.00 42.03 2.59
469 472 6.040278 TGCATTGAAACACAAACCATCTTAGA 59.960 34.615 0.00 0.00 42.03 2.10
470 473 6.215121 TGCATTGAAACACAAACCATCTTAG 58.785 36.000 0.00 0.00 42.03 2.18
471 474 6.154203 TGCATTGAAACACAAACCATCTTA 57.846 33.333 0.00 0.00 42.03 2.10
472 475 5.021033 TGCATTGAAACACAAACCATCTT 57.979 34.783 0.00 0.00 42.03 2.40
473 476 4.669206 TGCATTGAAACACAAACCATCT 57.331 36.364 0.00 0.00 42.03 2.90
474 477 4.377635 GCATGCATTGAAACACAAACCATC 60.378 41.667 14.21 0.00 42.03 3.51
475 478 3.499157 GCATGCATTGAAACACAAACCAT 59.501 39.130 14.21 0.00 42.03 3.55
476 479 2.871022 GCATGCATTGAAACACAAACCA 59.129 40.909 14.21 0.00 42.03 3.67
477 480 2.223845 GGCATGCATTGAAACACAAACC 59.776 45.455 21.36 0.00 42.03 3.27
478 481 2.223845 GGGCATGCATTGAAACACAAAC 59.776 45.455 21.36 0.00 42.03 2.93
479 482 2.492012 GGGCATGCATTGAAACACAAA 58.508 42.857 21.36 0.00 42.03 2.83
480 483 1.270732 GGGGCATGCATTGAAACACAA 60.271 47.619 21.36 0.00 42.95 3.33
481 484 0.321021 GGGGCATGCATTGAAACACA 59.679 50.000 21.36 0.00 0.00 3.72
482 485 0.391528 GGGGGCATGCATTGAAACAC 60.392 55.000 21.36 0.08 0.00 3.32
483 486 0.835115 TGGGGGCATGCATTGAAACA 60.835 50.000 21.36 5.24 0.00 2.83
484 487 0.542805 ATGGGGGCATGCATTGAAAC 59.457 50.000 21.36 0.00 0.00 2.78
485 488 2.171568 TATGGGGGCATGCATTGAAA 57.828 45.000 21.36 0.00 0.00 2.69
486 489 2.170187 GTTTATGGGGGCATGCATTGAA 59.830 45.455 21.36 2.45 0.00 2.69
487 490 1.761784 GTTTATGGGGGCATGCATTGA 59.238 47.619 21.36 0.05 0.00 2.57
488 491 1.538634 CGTTTATGGGGGCATGCATTG 60.539 52.381 21.36 0.00 0.00 2.82
489 492 0.752054 CGTTTATGGGGGCATGCATT 59.248 50.000 21.36 1.14 0.00 3.56
490 493 1.747325 GCGTTTATGGGGGCATGCAT 61.747 55.000 21.36 6.76 0.00 3.96
491 494 2.422231 GCGTTTATGGGGGCATGCA 61.422 57.895 21.36 0.00 0.00 3.96
492 495 0.821711 TAGCGTTTATGGGGGCATGC 60.822 55.000 9.90 9.90 0.00 4.06
493 496 1.686355 TTAGCGTTTATGGGGGCATG 58.314 50.000 0.00 0.00 0.00 4.06
494 497 2.238521 CATTAGCGTTTATGGGGGCAT 58.761 47.619 0.00 0.00 0.00 4.40
495 498 1.686355 CATTAGCGTTTATGGGGGCA 58.314 50.000 0.00 0.00 0.00 5.36
496 499 0.313987 GCATTAGCGTTTATGGGGGC 59.686 55.000 0.50 0.00 0.00 5.80
497 500 1.686355 TGCATTAGCGTTTATGGGGG 58.314 50.000 0.50 0.00 46.23 5.40
498 501 5.446143 TTTATGCATTAGCGTTTATGGGG 57.554 39.130 3.54 0.00 46.23 4.96
499 502 5.863397 CCATTTATGCATTAGCGTTTATGGG 59.137 40.000 3.54 0.00 46.23 4.00
500 503 5.345741 GCCATTTATGCATTAGCGTTTATGG 59.654 40.000 3.54 6.00 44.27 2.74
501 504 5.059587 CGCCATTTATGCATTAGCGTTTATG 59.940 40.000 3.54 0.00 46.23 1.90
502 505 5.153513 CGCCATTTATGCATTAGCGTTTAT 58.846 37.500 3.54 0.00 46.23 1.40
503 506 4.532276 CGCCATTTATGCATTAGCGTTTA 58.468 39.130 3.54 0.00 46.23 2.01
504 507 3.371168 CGCCATTTATGCATTAGCGTTT 58.629 40.909 3.54 0.00 46.23 3.60
505 508 2.287547 CCGCCATTTATGCATTAGCGTT 60.288 45.455 19.75 0.00 46.23 4.84
506 509 1.266718 CCGCCATTTATGCATTAGCGT 59.733 47.619 19.75 0.00 46.23 5.07
507 510 1.266718 ACCGCCATTTATGCATTAGCG 59.733 47.619 3.54 12.49 46.23 4.26
508 511 3.369546 AACCGCCATTTATGCATTAGC 57.630 42.857 3.54 0.07 42.57 3.09
509 512 6.142817 GTCTTAACCGCCATTTATGCATTAG 58.857 40.000 3.54 0.00 0.00 1.73
510 513 5.277586 CGTCTTAACCGCCATTTATGCATTA 60.278 40.000 3.54 0.00 0.00 1.90
511 514 4.497340 CGTCTTAACCGCCATTTATGCATT 60.497 41.667 3.54 0.00 0.00 3.56
512 515 3.003275 CGTCTTAACCGCCATTTATGCAT 59.997 43.478 3.79 3.79 0.00 3.96
513 516 2.353269 CGTCTTAACCGCCATTTATGCA 59.647 45.455 0.00 0.00 0.00 3.96
514 517 2.853281 GCGTCTTAACCGCCATTTATGC 60.853 50.000 3.90 0.00 45.20 3.14
515 518 2.981875 GCGTCTTAACCGCCATTTATG 58.018 47.619 3.90 0.00 45.20 1.90
523 526 8.304424 TGAAGTTATCAATGCGTCTTAACCGC 62.304 42.308 7.62 7.62 42.62 5.68
524 527 5.062934 TGAAGTTATCAATGCGTCTTAACCG 59.937 40.000 0.00 0.00 34.30 4.44
525 528 6.417191 TGAAGTTATCAATGCGTCTTAACC 57.583 37.500 0.00 0.00 34.30 2.85
526 529 7.739295 TCTTGAAGTTATCAATGCGTCTTAAC 58.261 34.615 0.00 0.00 46.62 2.01
527 530 7.817478 TCTCTTGAAGTTATCAATGCGTCTTAA 59.183 33.333 0.00 0.00 46.62 1.85
528 531 7.320399 TCTCTTGAAGTTATCAATGCGTCTTA 58.680 34.615 0.00 0.00 46.62 2.10
529 532 6.166279 TCTCTTGAAGTTATCAATGCGTCTT 58.834 36.000 0.00 0.00 46.62 3.01
530 533 5.724328 TCTCTTGAAGTTATCAATGCGTCT 58.276 37.500 0.00 0.00 46.62 4.18
531 534 5.006165 CCTCTCTTGAAGTTATCAATGCGTC 59.994 44.000 0.00 0.00 46.62 5.19
532 535 4.872691 CCTCTCTTGAAGTTATCAATGCGT 59.127 41.667 0.00 0.00 46.62 5.24
533 536 4.872691 ACCTCTCTTGAAGTTATCAATGCG 59.127 41.667 0.00 0.00 46.62 4.73
534 537 6.372659 TCAACCTCTCTTGAAGTTATCAATGC 59.627 38.462 0.00 0.00 46.62 3.56
535 538 7.821359 TCTCAACCTCTCTTGAAGTTATCAATG 59.179 37.037 0.00 0.00 46.62 2.82
536 539 7.911651 TCTCAACCTCTCTTGAAGTTATCAAT 58.088 34.615 0.00 0.00 46.62 2.57
537 540 7.303182 TCTCAACCTCTCTTGAAGTTATCAA 57.697 36.000 0.00 0.00 45.71 2.57
538 541 6.918067 TCTCAACCTCTCTTGAAGTTATCA 57.082 37.500 0.00 0.00 35.85 2.15
539 542 9.877178 TTTATCTCAACCTCTCTTGAAGTTATC 57.123 33.333 0.00 0.00 29.66 1.75
540 543 9.660180 GTTTATCTCAACCTCTCTTGAAGTTAT 57.340 33.333 0.00 0.00 29.66 1.89
541 544 8.871125 AGTTTATCTCAACCTCTCTTGAAGTTA 58.129 33.333 0.00 0.00 29.66 2.24
542 545 7.740805 AGTTTATCTCAACCTCTCTTGAAGTT 58.259 34.615 0.00 0.00 29.66 2.66
543 546 7.309770 AGTTTATCTCAACCTCTCTTGAAGT 57.690 36.000 0.00 0.00 29.66 3.01
544 547 9.145865 GTTAGTTTATCTCAACCTCTCTTGAAG 57.854 37.037 0.00 0.00 29.66 3.02
545 548 8.095169 GGTTAGTTTATCTCAACCTCTCTTGAA 58.905 37.037 0.00 0.00 37.92 2.69
546 549 7.455008 AGGTTAGTTTATCTCAACCTCTCTTGA 59.545 37.037 0.00 0.00 46.05 3.02
547 550 7.616313 AGGTTAGTTTATCTCAACCTCTCTTG 58.384 38.462 0.00 0.00 46.05 3.02
548 551 7.800300 AGGTTAGTTTATCTCAACCTCTCTT 57.200 36.000 0.00 0.00 46.05 2.85
549 552 8.751242 GTTAGGTTAGTTTATCTCAACCTCTCT 58.249 37.037 8.07 0.00 46.05 3.10
550 553 8.529476 TGTTAGGTTAGTTTATCTCAACCTCTC 58.471 37.037 8.07 4.52 46.05 3.20
551 554 8.431910 TGTTAGGTTAGTTTATCTCAACCTCT 57.568 34.615 8.07 0.00 46.05 3.69
552 555 8.933807 GTTGTTAGGTTAGTTTATCTCAACCTC 58.066 37.037 8.07 0.00 46.05 3.85
554 557 8.611654 TGTTGTTAGGTTAGTTTATCTCAACC 57.388 34.615 0.00 0.00 40.64 3.77
557 560 9.280174 CCTTTGTTGTTAGGTTAGTTTATCTCA 57.720 33.333 0.00 0.00 0.00 3.27
558 561 9.498176 TCCTTTGTTGTTAGGTTAGTTTATCTC 57.502 33.333 0.00 0.00 33.15 2.75
559 562 9.503399 CTCCTTTGTTGTTAGGTTAGTTTATCT 57.497 33.333 0.00 0.00 33.15 1.98
560 563 9.281371 ACTCCTTTGTTGTTAGGTTAGTTTATC 57.719 33.333 0.00 0.00 33.15 1.75
561 564 9.281371 GACTCCTTTGTTGTTAGGTTAGTTTAT 57.719 33.333 0.00 0.00 33.15 1.40
562 565 8.488668 AGACTCCTTTGTTGTTAGGTTAGTTTA 58.511 33.333 0.00 0.00 33.15 2.01
563 566 7.282450 CAGACTCCTTTGTTGTTAGGTTAGTTT 59.718 37.037 0.00 0.00 33.15 2.66
564 567 6.766467 CAGACTCCTTTGTTGTTAGGTTAGTT 59.234 38.462 0.00 0.00 33.15 2.24
565 568 6.126854 ACAGACTCCTTTGTTGTTAGGTTAGT 60.127 38.462 0.00 0.00 33.15 2.24
566 569 6.289064 ACAGACTCCTTTGTTGTTAGGTTAG 58.711 40.000 0.00 0.00 33.15 2.34
567 570 6.243216 ACAGACTCCTTTGTTGTTAGGTTA 57.757 37.500 0.00 0.00 33.15 2.85
568 571 5.112129 ACAGACTCCTTTGTTGTTAGGTT 57.888 39.130 0.00 0.00 33.15 3.50
569 572 4.772886 ACAGACTCCTTTGTTGTTAGGT 57.227 40.909 0.00 0.00 33.15 3.08
570 573 6.231211 ACATACAGACTCCTTTGTTGTTAGG 58.769 40.000 0.00 0.00 0.00 2.69
571 574 7.730364 AACATACAGACTCCTTTGTTGTTAG 57.270 36.000 0.00 0.00 32.31 2.34
572 575 9.431887 GATAACATACAGACTCCTTTGTTGTTA 57.568 33.333 0.00 0.00 36.47 2.41
573 576 7.936847 TGATAACATACAGACTCCTTTGTTGTT 59.063 33.333 0.00 0.00 35.20 2.83
574 577 7.387948 GTGATAACATACAGACTCCTTTGTTGT 59.612 37.037 0.00 0.00 0.00 3.32
575 578 7.411912 CGTGATAACATACAGACTCCTTTGTTG 60.412 40.741 0.00 0.00 0.00 3.33
576 579 6.590292 CGTGATAACATACAGACTCCTTTGTT 59.410 38.462 0.00 0.00 0.00 2.83
577 580 6.071560 TCGTGATAACATACAGACTCCTTTGT 60.072 38.462 0.00 0.00 0.00 2.83
578 581 6.330278 TCGTGATAACATACAGACTCCTTTG 58.670 40.000 0.00 0.00 0.00 2.77
579 582 6.405953 CCTCGTGATAACATACAGACTCCTTT 60.406 42.308 0.00 0.00 0.00 3.11
580 583 5.067936 CCTCGTGATAACATACAGACTCCTT 59.932 44.000 0.00 0.00 0.00 3.36
581 584 4.580995 CCTCGTGATAACATACAGACTCCT 59.419 45.833 0.00 0.00 0.00 3.69
582 585 4.579340 TCCTCGTGATAACATACAGACTCC 59.421 45.833 0.00 0.00 0.00 3.85
583 586 5.752892 TCCTCGTGATAACATACAGACTC 57.247 43.478 0.00 0.00 0.00 3.36
584 587 5.828328 TCATCCTCGTGATAACATACAGACT 59.172 40.000 0.00 0.00 30.56 3.24
585 588 5.915758 GTCATCCTCGTGATAACATACAGAC 59.084 44.000 0.00 0.00 30.56 3.51
586 589 5.592688 TGTCATCCTCGTGATAACATACAGA 59.407 40.000 0.00 0.00 25.90 3.41
587 590 5.831997 TGTCATCCTCGTGATAACATACAG 58.168 41.667 0.00 0.00 25.90 2.74
588 591 5.845391 TGTCATCCTCGTGATAACATACA 57.155 39.130 0.00 0.00 25.90 2.29
589 592 7.715265 AATTGTCATCCTCGTGATAACATAC 57.285 36.000 0.00 0.00 31.53 2.39
590 593 8.731275 AAAATTGTCATCCTCGTGATAACATA 57.269 30.769 0.00 0.00 31.53 2.29
591 594 7.554118 AGAAAATTGTCATCCTCGTGATAACAT 59.446 33.333 0.00 0.00 31.53 2.71
592 595 6.878923 AGAAAATTGTCATCCTCGTGATAACA 59.121 34.615 0.00 0.00 33.06 2.41
593 596 7.308782 AGAAAATTGTCATCCTCGTGATAAC 57.691 36.000 0.00 0.00 33.06 1.89
594 597 7.921786 AAGAAAATTGTCATCCTCGTGATAA 57.078 32.000 0.00 0.00 34.43 1.75
595 598 7.921786 AAAGAAAATTGTCATCCTCGTGATA 57.078 32.000 0.00 0.00 30.56 2.15
596 599 6.824305 AAAGAAAATTGTCATCCTCGTGAT 57.176 33.333 0.00 0.00 0.00 3.06
597 600 6.128282 GCTAAAGAAAATTGTCATCCTCGTGA 60.128 38.462 0.00 0.00 0.00 4.35
598 601 6.024049 GCTAAAGAAAATTGTCATCCTCGTG 58.976 40.000 0.00 0.00 0.00 4.35
599 602 5.705441 TGCTAAAGAAAATTGTCATCCTCGT 59.295 36.000 0.00 0.00 0.00 4.18
600 603 6.182039 TGCTAAAGAAAATTGTCATCCTCG 57.818 37.500 0.00 0.00 0.00 4.63
601 604 6.529477 GCTTGCTAAAGAAAATTGTCATCCTC 59.471 38.462 0.00 0.00 35.19 3.71
602 605 6.015180 TGCTTGCTAAAGAAAATTGTCATCCT 60.015 34.615 0.00 0.00 35.19 3.24
603 606 6.089954 GTGCTTGCTAAAGAAAATTGTCATCC 59.910 38.462 0.00 0.00 35.19 3.51
604 607 6.183359 CGTGCTTGCTAAAGAAAATTGTCATC 60.183 38.462 0.00 0.00 35.19 2.92
605 608 5.630680 CGTGCTTGCTAAAGAAAATTGTCAT 59.369 36.000 0.00 0.00 35.19 3.06
606 609 4.975502 CGTGCTTGCTAAAGAAAATTGTCA 59.024 37.500 0.00 0.00 35.19 3.58
607 610 5.115622 GTCGTGCTTGCTAAAGAAAATTGTC 59.884 40.000 0.00 0.00 35.19 3.18
608 611 4.976116 GTCGTGCTTGCTAAAGAAAATTGT 59.024 37.500 0.00 0.00 35.19 2.71
609 612 4.975502 TGTCGTGCTTGCTAAAGAAAATTG 59.024 37.500 0.00 0.00 35.19 2.32
610 613 5.181690 TGTCGTGCTTGCTAAAGAAAATT 57.818 34.783 0.00 0.00 35.19 1.82
611 614 4.829064 TGTCGTGCTTGCTAAAGAAAAT 57.171 36.364 0.00 0.00 35.19 1.82
612 615 4.829064 ATGTCGTGCTTGCTAAAGAAAA 57.171 36.364 0.00 0.00 35.19 2.29
613 616 4.320202 GGAATGTCGTGCTTGCTAAAGAAA 60.320 41.667 0.00 0.00 35.19 2.52
614 617 3.188460 GGAATGTCGTGCTTGCTAAAGAA 59.812 43.478 0.00 0.00 35.19 2.52
615 618 2.742053 GGAATGTCGTGCTTGCTAAAGA 59.258 45.455 0.00 0.00 35.19 2.52
616 619 2.744202 AGGAATGTCGTGCTTGCTAAAG 59.256 45.455 0.00 0.00 36.41 1.85
617 620 2.778299 AGGAATGTCGTGCTTGCTAAA 58.222 42.857 0.00 0.00 0.00 1.85
618 621 2.472695 AGGAATGTCGTGCTTGCTAA 57.527 45.000 0.00 0.00 0.00 3.09
619 622 2.738643 GCTAGGAATGTCGTGCTTGCTA 60.739 50.000 0.00 0.00 35.45 3.49
620 623 2.009042 GCTAGGAATGTCGTGCTTGCT 61.009 52.381 0.00 0.00 35.45 3.91
621 624 0.375106 GCTAGGAATGTCGTGCTTGC 59.625 55.000 0.00 0.00 31.56 4.01
622 625 1.725641 TGCTAGGAATGTCGTGCTTG 58.274 50.000 0.00 0.00 0.00 4.01
623 626 2.472695 TTGCTAGGAATGTCGTGCTT 57.527 45.000 0.00 0.00 0.00 3.91
624 627 2.472695 TTTGCTAGGAATGTCGTGCT 57.527 45.000 0.00 0.00 0.00 4.40
625 628 3.552604 TTTTTGCTAGGAATGTCGTGC 57.447 42.857 0.00 0.00 0.00 5.34
626 629 6.148948 TCAAATTTTTGCTAGGAATGTCGTG 58.851 36.000 0.00 0.00 38.05 4.35
627 630 6.325919 TCAAATTTTTGCTAGGAATGTCGT 57.674 33.333 0.00 0.00 38.05 4.34
628 631 7.636259 TTTCAAATTTTTGCTAGGAATGTCG 57.364 32.000 0.00 0.00 38.05 4.35
629 632 9.815936 CATTTTCAAATTTTTGCTAGGAATGTC 57.184 29.630 0.00 0.00 38.05 3.06
630 633 9.558396 TCATTTTCAAATTTTTGCTAGGAATGT 57.442 25.926 0.00 0.00 38.05 2.71
631 634 9.815936 GTCATTTTCAAATTTTTGCTAGGAATG 57.184 29.630 0.00 0.00 38.05 2.67
632 635 9.558396 TGTCATTTTCAAATTTTTGCTAGGAAT 57.442 25.926 0.00 0.00 38.05 3.01
633 636 8.954950 TGTCATTTTCAAATTTTTGCTAGGAA 57.045 26.923 0.00 0.00 38.05 3.36
634 637 8.991026 CATGTCATTTTCAAATTTTTGCTAGGA 58.009 29.630 0.00 0.00 38.05 2.94
635 638 8.991026 TCATGTCATTTTCAAATTTTTGCTAGG 58.009 29.630 0.00 0.00 38.05 3.02
643 646 9.258826 TGACGAATTCATGTCATTTTCAAATTT 57.741 25.926 10.93 0.00 40.02 1.82
644 647 8.815141 TGACGAATTCATGTCATTTTCAAATT 57.185 26.923 10.93 0.00 40.02 1.82
665 668 6.251376 GGTATTTTCTTTTAGCAAGCATGACG 59.749 38.462 0.00 0.00 0.00 4.35
686 689 4.794278 TGTGTTGTCACGAGTATGGTAT 57.206 40.909 0.00 0.00 46.49 2.73
693 696 7.116376 CAGATAGTAAATTGTGTTGTCACGAGT 59.884 37.037 0.00 0.00 46.49 4.18
706 709 6.851222 ATCCAACGCTCAGATAGTAAATTG 57.149 37.500 0.00 0.00 0.00 2.32
712 715 2.939103 GCAAATCCAACGCTCAGATAGT 59.061 45.455 0.00 0.00 0.00 2.12
717 720 2.256391 TGGCAAATCCAACGCTCAG 58.744 52.632 0.00 0.00 43.21 3.35
746 749 0.109319 GTTGCAAATCGAATGCCGGT 60.109 50.000 19.94 0.00 43.16 5.28
750 753 3.000773 GGATTTCGTTGCAAATCGAATGC 60.001 43.478 21.07 17.01 43.69 3.56
753 756 3.906014 TGGATTTCGTTGCAAATCGAA 57.094 38.095 17.80 17.80 41.80 3.71
755 758 4.963237 TTTTGGATTTCGTTGCAAATCG 57.037 36.364 0.00 1.03 41.80 3.34
784 787 7.948034 AAAATCCGGGTCTATGATTTGTTTA 57.052 32.000 0.00 0.00 38.39 2.01
816 819 4.080638 TCAAGTTTTCAAATTTGGGCAGGT 60.081 37.500 17.90 0.00 36.59 4.00
820 823 7.025485 TCAATTCAAGTTTTCAAATTTGGGC 57.975 32.000 17.90 6.28 36.59 5.36
865 869 5.559770 TCAGCTAACCATTCTGAAATCACA 58.440 37.500 0.00 0.00 34.30 3.58
873 877 5.083533 AGAGTTCTCAGCTAACCATTCTG 57.916 43.478 2.64 0.00 0.00 3.02
889 893 3.075148 GCAGGGTTTTAGTGGAGAGTTC 58.925 50.000 0.00 0.00 0.00 3.01
921 925 8.560374 GCGCAGGAGTATATTAAAAGAAGAAAT 58.440 33.333 0.30 0.00 0.00 2.17
922 926 7.012044 GGCGCAGGAGTATATTAAAAGAAGAAA 59.988 37.037 10.83 0.00 0.00 2.52
923 927 6.482308 GGCGCAGGAGTATATTAAAAGAAGAA 59.518 38.462 10.83 0.00 0.00 2.52
924 928 5.989777 GGCGCAGGAGTATATTAAAAGAAGA 59.010 40.000 10.83 0.00 0.00 2.87
925 929 5.107453 CGGCGCAGGAGTATATTAAAAGAAG 60.107 44.000 10.83 0.00 0.00 2.85
926 930 4.748102 CGGCGCAGGAGTATATTAAAAGAA 59.252 41.667 10.83 0.00 0.00 2.52
927 931 4.304110 CGGCGCAGGAGTATATTAAAAGA 58.696 43.478 10.83 0.00 0.00 2.52
928 932 3.120649 GCGGCGCAGGAGTATATTAAAAG 60.121 47.826 29.21 0.00 0.00 2.27
929 933 2.803956 GCGGCGCAGGAGTATATTAAAA 59.196 45.455 29.21 0.00 0.00 1.52
930 934 2.409975 GCGGCGCAGGAGTATATTAAA 58.590 47.619 29.21 0.00 0.00 1.52
931 935 1.667756 CGCGGCGCAGGAGTATATTAA 60.668 52.381 32.61 0.00 0.00 1.40
932 936 0.109458 CGCGGCGCAGGAGTATATTA 60.109 55.000 32.61 0.00 0.00 0.98
933 937 1.372997 CGCGGCGCAGGAGTATATT 60.373 57.895 32.61 0.00 0.00 1.28
934 938 2.258591 CGCGGCGCAGGAGTATAT 59.741 61.111 32.61 0.00 0.00 0.86
947 951 2.501223 TTTAGTGGAGAGTGGCGCGG 62.501 60.000 8.83 0.00 0.00 6.46
948 952 1.080093 TTTAGTGGAGAGTGGCGCG 60.080 57.895 0.00 0.00 0.00 6.86
949 953 0.320421 TGTTTAGTGGAGAGTGGCGC 60.320 55.000 0.00 0.00 0.00 6.53
950 954 1.270094 TGTGTTTAGTGGAGAGTGGCG 60.270 52.381 0.00 0.00 0.00 5.69
951 955 2.543777 TGTGTTTAGTGGAGAGTGGC 57.456 50.000 0.00 0.00 0.00 5.01
952 956 4.058817 GTCTTGTGTTTAGTGGAGAGTGG 58.941 47.826 0.00 0.00 0.00 4.00
953 957 4.693283 TGTCTTGTGTTTAGTGGAGAGTG 58.307 43.478 0.00 0.00 0.00 3.51
954 958 4.202264 CCTGTCTTGTGTTTAGTGGAGAGT 60.202 45.833 0.00 0.00 0.00 3.24
955 959 4.039245 TCCTGTCTTGTGTTTAGTGGAGAG 59.961 45.833 0.00 0.00 0.00 3.20
956 960 3.964688 TCCTGTCTTGTGTTTAGTGGAGA 59.035 43.478 0.00 0.00 0.00 3.71
957 961 4.039245 TCTCCTGTCTTGTGTTTAGTGGAG 59.961 45.833 0.00 0.00 39.69 3.86
958 962 3.964688 TCTCCTGTCTTGTGTTTAGTGGA 59.035 43.478 0.00 0.00 0.00 4.02
959 963 4.039245 TCTCTCCTGTCTTGTGTTTAGTGG 59.961 45.833 0.00 0.00 0.00 4.00
960 964 4.985409 GTCTCTCCTGTCTTGTGTTTAGTG 59.015 45.833 0.00 0.00 0.00 2.74
961 965 4.649674 TGTCTCTCCTGTCTTGTGTTTAGT 59.350 41.667 0.00 0.00 0.00 2.24
962 966 4.985409 GTGTCTCTCCTGTCTTGTGTTTAG 59.015 45.833 0.00 0.00 0.00 1.85
963 967 4.202223 GGTGTCTCTCCTGTCTTGTGTTTA 60.202 45.833 0.00 0.00 0.00 2.01
964 968 3.432326 GGTGTCTCTCCTGTCTTGTGTTT 60.432 47.826 0.00 0.00 0.00 2.83
965 969 2.103263 GGTGTCTCTCCTGTCTTGTGTT 59.897 50.000 0.00 0.00 0.00 3.32
966 970 1.689273 GGTGTCTCTCCTGTCTTGTGT 59.311 52.381 0.00 0.00 0.00 3.72
970 974 1.867919 CGCGGTGTCTCTCCTGTCTT 61.868 60.000 0.00 0.00 0.00 3.01
1027 1031 1.218047 CATCCGCTTCGACTGGGAA 59.782 57.895 2.03 0.00 31.24 3.97
1032 1036 2.786495 ATCGCCATCCGCTTCGACT 61.786 57.895 0.00 0.00 36.73 4.18
1110 1114 2.514824 GGTTGGATCTCAGCGGGC 60.515 66.667 0.00 0.00 0.00 6.13
1116 1120 1.003118 CGGTGGAAAGGTTGGATCTCA 59.997 52.381 0.00 0.00 0.00 3.27
1633 1637 2.254152 TCTGCTGGAACCTGAGGTAT 57.746 50.000 3.68 0.00 33.12 2.73
1921 1925 2.359975 CTCCCCAAGCACCGGAAC 60.360 66.667 9.46 0.00 0.00 3.62
2037 2041 2.912956 TCAACTACCTCTTTGGCCATCT 59.087 45.455 6.09 0.00 40.22 2.90
2095 2099 2.917701 TGCCAAACATAGCATTGTCG 57.082 45.000 0.00 0.00 33.08 4.35
2104 2108 4.032960 AGAGACCACAATGCCAAACATA 57.967 40.909 0.00 0.00 38.34 2.29
2290 2294 2.499289 CACACTAGACAAGAGCCCATCT 59.501 50.000 0.00 0.00 41.27 2.90
2386 2390 3.425162 AGGAAACCTTTCTCTCGCATT 57.575 42.857 0.00 0.00 37.35 3.56
2479 2483 7.121168 CCATCTTCCATAAGCAACTTAAGAACA 59.879 37.037 10.09 0.00 32.36 3.18
2489 2493 5.394443 GCATGAAACCATCTTCCATAAGCAA 60.394 40.000 0.00 0.00 32.36 3.91
2501 2505 6.585695 AATGATATCTGGCATGAAACCATC 57.414 37.500 3.98 0.00 36.36 3.51
2566 2570 3.047796 GCAATCAAACGCATCATCCATC 58.952 45.455 0.00 0.00 0.00 3.51
2665 2669 2.559330 GCCTTGTTAACGTGCCCG 59.441 61.111 0.26 0.00 40.83 6.13
2812 2816 4.315803 CGTCTGGAACAACACCTAATCTT 58.684 43.478 0.00 0.00 38.70 2.40
2866 2870 7.574404 GCATCATCAACTCTCTTTTCATCACAA 60.574 37.037 0.00 0.00 0.00 3.33
2877 2881 4.564782 TCTTTGGCATCATCAACTCTCT 57.435 40.909 0.00 0.00 0.00 3.10
2878 2882 5.633830 TTTCTTTGGCATCATCAACTCTC 57.366 39.130 0.00 0.00 0.00 3.20
3089 3093 3.309682 ACAACTCACACATTGACAACTCG 59.690 43.478 0.00 0.00 0.00 4.18
3126 3130 5.801531 ATCATTCATGTGCCAAATAGCAT 57.198 34.783 0.00 0.00 46.24 3.79
3137 3141 2.621998 GAGGAGGGCAATCATTCATGTG 59.378 50.000 0.00 0.00 0.00 3.21
3179 3183 2.715046 CACCTTAGCAAAGATGAGCCA 58.285 47.619 0.00 0.00 34.37 4.75
3213 3217 0.462047 GGAGCGGTTATGGACAGTGG 60.462 60.000 0.00 0.00 0.00 4.00
3324 3328 1.743252 GGGCGCTGAGAAGTTCCAG 60.743 63.158 7.64 13.86 0.00 3.86
3354 3483 6.585695 ATCCATATCATTCCTGAAATGCAC 57.414 37.500 0.00 0.00 43.80 4.57
3389 3518 6.319658 ACTTCTTCTGCAAAGATTTTCAGACA 59.680 34.615 7.08 0.00 39.50 3.41
3528 3657 4.678509 TTCACTTTATGTTAGCTTGCGG 57.321 40.909 0.00 0.00 0.00 5.69
3646 3775 8.423906 ACTGAGGACTACTAGAAATTTCTGAA 57.576 34.615 27.37 10.31 38.19 3.02
3674 3803 1.810151 GTTGCACCCGATGTTACATGT 59.190 47.619 1.24 2.69 0.00 3.21
3686 3815 7.448469 ACATAGAATTATAGGAATGTTGCACCC 59.552 37.037 0.00 0.00 0.00 4.61
3747 3876 1.892819 ATCACAGTCTCCACGGCCAG 61.893 60.000 2.24 0.00 0.00 4.85
3761 3890 6.543465 CCATCCTAATTACAGAAAGCATCACA 59.457 38.462 0.00 0.00 0.00 3.58
3777 3906 4.242811 TGGGATACTTCTGCCATCCTAAT 58.757 43.478 0.00 0.00 38.64 1.73
3779 3908 3.344535 TGGGATACTTCTGCCATCCTA 57.655 47.619 0.00 0.00 38.64 2.94
3805 3939 5.011125 ACATAATATGAAGCTACGGACTGCT 59.989 40.000 7.33 0.00 41.82 4.24
3812 3946 6.018751 AGCAACACACATAATATGAAGCTACG 60.019 38.462 7.33 0.00 0.00 3.51
3867 4001 0.320374 TTACCACTCCAAGGTCGCTG 59.680 55.000 0.00 0.00 40.54 5.18
3892 4026 3.068448 TGAGACAATTGCTGTGTTGCATT 59.932 39.130 5.05 0.00 42.96 3.56
4026 4185 6.047870 TGATGTGAAATGTTTGTTTTCCAGG 58.952 36.000 0.00 0.00 33.15 4.45
4027 4186 7.569297 CATGATGTGAAATGTTTGTTTTCCAG 58.431 34.615 0.00 0.00 33.15 3.86
4063 4222 0.543277 AAGCAATCATCCTCCGCAGA 59.457 50.000 0.00 0.00 0.00 4.26
4067 4226 2.042686 TTGGAAGCAATCATCCTCCG 57.957 50.000 0.00 0.00 36.64 4.63
4075 4234 4.019174 TCAAGGAGGATTTGGAAGCAATC 58.981 43.478 0.00 0.00 0.00 2.67
4100 4259 2.288666 GTGCAGTCTGAAACACCAGAA 58.711 47.619 3.32 0.00 43.94 3.02
4138 4297 0.956633 TGACCGGTAGACACAGTCAC 59.043 55.000 7.34 0.00 35.64 3.67
4144 4303 1.520666 CCCCATGACCGGTAGACAC 59.479 63.158 7.34 0.00 0.00 3.67
4169 4328 4.272018 AGCAGCGATGAGAATTCACATAAC 59.728 41.667 16.95 12.28 35.83 1.89
4210 4370 0.032416 AAGAGAAGCTAGCCCCCGTA 60.032 55.000 12.13 0.00 0.00 4.02
4345 4505 1.967319 ACAGCTGTAACAACTGGGTG 58.033 50.000 20.16 6.47 32.54 4.61
4428 4588 3.775202 CATCCTGGTCTGAAGTAACGAG 58.225 50.000 0.00 0.00 0.00 4.18
4612 4777 7.891183 TCAAGATTCCTCGTTTCTCTAAAAG 57.109 36.000 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.