Multiple sequence alignment - TraesCS5D01G101300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G101300 chr5D 100.000 5125 0 0 1 5125 114348336 114353460 0.000000e+00 9465.0
1 TraesCS5D01G101300 chr5D 91.111 45 4 0 1175 1219 16940896 16940852 1.540000e-05 62.1
2 TraesCS5D01G101300 chr5D 96.875 32 1 0 3690 3721 508158841 508158810 3.000000e-03 54.7
3 TraesCS5D01G101300 chr5A 93.155 2133 119 16 1205 3320 119439272 119441394 0.000000e+00 3105.0
4 TraesCS5D01G101300 chr5A 93.135 1413 65 16 3712 5098 119441654 119443060 0.000000e+00 2043.0
5 TraesCS5D01G101300 chr5A 95.393 521 21 3 661 1178 119438776 119439296 0.000000e+00 826.0
6 TraesCS5D01G101300 chr5A 82.857 315 26 7 325 615 119437958 119438268 1.830000e-64 257.0
7 TraesCS5D01G101300 chr5A 100.000 28 0 0 3689 3716 702603306 702603279 9.000000e-03 52.8
8 TraesCS5D01G101300 chr5B 95.442 1426 44 10 3712 5125 125231243 125232659 0.000000e+00 2254.0
9 TraesCS5D01G101300 chr5B 94.918 1161 52 5 1205 2358 125228658 125229818 0.000000e+00 1810.0
10 TraesCS5D01G101300 chr5B 93.823 1198 36 15 2 1165 125227476 125228669 0.000000e+00 1768.0
11 TraesCS5D01G101300 chr5B 89.846 975 70 11 2356 3320 125229941 125230896 0.000000e+00 1225.0
12 TraesCS5D01G101300 chr5B 89.474 76 8 0 4962 5037 9654675 9654750 4.220000e-16 97.1
13 TraesCS5D01G101300 chr5B 97.368 38 1 0 1175 1212 77643698 77643661 1.190000e-06 65.8
14 TraesCS5D01G101300 chr5B 92.308 39 2 1 3311 3349 591177612 591177575 3.000000e-03 54.7
15 TraesCS5D01G101300 chr3A 80.805 323 58 4 3803 4123 189280282 189280602 3.060000e-62 250.0
16 TraesCS5D01G101300 chr3A 94.030 134 8 0 999 1132 189276072 189276205 2.420000e-48 204.0
17 TraesCS5D01G101300 chr3A 93.985 133 6 2 1000 1131 266451191 266451322 3.130000e-47 200.0
18 TraesCS5D01G101300 chr3D 79.876 323 61 4 3803 4123 160908837 160908517 3.090000e-57 233.0
19 TraesCS5D01G101300 chr3D 94.030 134 8 0 999 1132 160912166 160912033 2.420000e-48 204.0
20 TraesCS5D01G101300 chr3D 93.985 133 6 2 1000 1131 193598104 193597973 3.130000e-47 200.0
21 TraesCS5D01G101300 chr3D 92.308 39 2 1 3311 3349 147689134 147689097 3.000000e-03 54.7
22 TraesCS5D01G101300 chr3D 92.308 39 2 1 3311 3349 272288933 272288896 3.000000e-03 54.7
23 TraesCS5D01G101300 chr3B 94.030 134 8 0 999 1132 237648052 237647919 2.420000e-48 204.0
24 TraesCS5D01G101300 chr3B 93.985 133 6 2 1000 1131 276849193 276849324 3.130000e-47 200.0
25 TraesCS5D01G101300 chr3B 90.789 76 7 0 4962 5037 716420111 716420186 9.080000e-18 102.0
26 TraesCS5D01G101300 chr3B 88.095 84 10 0 4954 5037 519489966 519490049 3.270000e-17 100.0
27 TraesCS5D01G101300 chr3B 89.474 76 8 0 4962 5037 79950470 79950395 4.220000e-16 97.1
28 TraesCS5D01G101300 chrUn 76.299 308 49 9 295 581 60962109 60962413 5.350000e-30 143.0
29 TraesCS5D01G101300 chr7D 75.556 315 50 14 291 587 509568377 509568682 4.160000e-26 130.0
30 TraesCS5D01G101300 chr4A 92.045 88 7 0 3629 3716 614099443 614099530 1.940000e-24 124.0
31 TraesCS5D01G101300 chr2B 77.132 258 29 14 18 274 456028309 456028081 6.970000e-24 122.0
32 TraesCS5D01G101300 chr2B 89.474 76 8 0 4962 5037 455702032 455702107 4.220000e-16 97.1
33 TraesCS5D01G101300 chr7B 75.312 320 38 23 291 584 537728713 537729017 1.170000e-21 115.0
34 TraesCS5D01G101300 chr7B 86.538 52 6 1 3311 3362 528869717 528869667 7.170000e-04 56.5
35 TraesCS5D01G101300 chr7B 90.244 41 3 1 3311 3351 13874474 13874435 9.000000e-03 52.8
36 TraesCS5D01G101300 chr7B 100.000 28 0 0 3689 3716 603569348 603569375 9.000000e-03 52.8
37 TraesCS5D01G101300 chr1B 76.824 233 27 8 378 585 98903086 98903316 7.020000e-19 106.0
38 TraesCS5D01G101300 chr4D 89.474 76 8 0 4962 5037 508459767 508459692 4.220000e-16 97.1
39 TraesCS5D01G101300 chr4D 92.105 38 2 1 3311 3348 36619600 36619564 9.000000e-03 52.8
40 TraesCS5D01G101300 chr1D 86.905 84 11 0 4954 5037 491803503 491803420 1.520000e-15 95.3
41 TraesCS5D01G101300 chr1D 91.071 56 3 2 432 486 62112279 62112333 1.980000e-09 75.0
42 TraesCS5D01G101300 chr7A 91.667 48 1 3 1175 1220 69885070 69885024 4.280000e-06 63.9
43 TraesCS5D01G101300 chr7A 95.000 40 0 2 1179 1217 1951608 1951646 1.540000e-05 62.1
44 TraesCS5D01G101300 chr7A 94.737 38 1 1 1175 1212 704326012 704326048 1.990000e-04 58.4
45 TraesCS5D01G101300 chr7A 92.500 40 2 1 1175 1214 13776960 13776922 7.170000e-04 56.5
46 TraesCS5D01G101300 chr4B 89.583 48 3 2 1174 1219 5973486 5973533 5.540000e-05 60.2
47 TraesCS5D01G101300 chr2D 97.143 35 1 0 1164 1198 37926459 37926425 5.540000e-05 60.2
48 TraesCS5D01G101300 chr2A 88.235 51 5 1 3672 3721 149210841 149210891 5.540000e-05 60.2
49 TraesCS5D01G101300 chr2A 94.595 37 1 1 3311 3347 324607615 324607580 7.170000e-04 56.5
50 TraesCS5D01G101300 chr2A 100.000 28 0 0 3694 3721 758363931 758363904 9.000000e-03 52.8
51 TraesCS5D01G101300 chr6D 92.683 41 2 1 1175 1215 3104154 3104115 1.990000e-04 58.4
52 TraesCS5D01G101300 chr6D 96.970 33 1 0 3689 3721 40408748 40408716 7.170000e-04 56.5
53 TraesCS5D01G101300 chr6D 92.105 38 2 1 3311 3348 118635230 118635266 9.000000e-03 52.8
54 TraesCS5D01G101300 chr1A 92.105 38 2 1 3311 3348 443128281 443128317 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G101300 chr5D 114348336 114353460 5124 False 9465.00 9465 100.00000 1 5125 1 chr5D.!!$F1 5124
1 TraesCS5D01G101300 chr5A 119437958 119443060 5102 False 1557.75 3105 91.13500 325 5098 4 chr5A.!!$F1 4773
2 TraesCS5D01G101300 chr5B 125227476 125232659 5183 False 1764.25 2254 93.50725 2 5125 4 chr5B.!!$F2 5123
3 TraesCS5D01G101300 chr3D 160908517 160912166 3649 True 218.50 233 86.95300 999 4123 2 chr3D.!!$R4 3124

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 1421 0.179070 GTCGATCCCTTCCTTCTGCC 60.179 60.0 0.0 0.0 0.00 4.85 F
1440 1951 0.321919 TTGGAGACATCTGTGCCAGC 60.322 55.0 0.0 0.0 42.32 4.85 F
3092 6092 0.801251 GTGTGCAGCAGGATCTGTTC 59.199 55.0 0.0 0.0 36.49 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2578 5577 0.692419 AAAATGCACCAACCCCACCA 60.692 50.000 0.0 0.0 0.0 4.17 R
3264 6273 0.106868 ACCCCAAGCCGTTATTAGCC 60.107 55.000 0.0 0.0 0.0 3.93 R
4936 8041 3.840991 TGGTACTGATATACTCCGCCTT 58.159 45.455 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.075970 GGAAGGATGGGAAAGGGGC 60.076 63.158 0.00 0.00 0.00 5.80
140 141 4.037327 TGAAGGTTGATTTTTCATCGTGCA 59.963 37.500 0.00 0.00 0.00 4.57
179 180 3.519908 CGAGAGCGTTTGTTTTCATCA 57.480 42.857 0.00 0.00 0.00 3.07
205 206 3.311110 GGATAGCGATGGGGGCGA 61.311 66.667 0.00 0.00 35.00 5.54
206 207 2.262915 GATAGCGATGGGGGCGAG 59.737 66.667 0.00 0.00 35.00 5.03
207 208 3.941657 GATAGCGATGGGGGCGAGC 62.942 68.421 0.00 0.00 35.00 5.03
223 224 2.815647 GCGAAGGACGGGCAGAAG 60.816 66.667 0.00 0.00 42.83 2.85
239 240 1.132817 AGAAGGTGGTCCTGTGGTAGT 60.133 52.381 0.00 0.00 44.35 2.73
244 245 3.326880 AGGTGGTCCTGTGGTAGTAAAAG 59.673 47.826 0.00 0.00 43.33 2.27
255 256 6.752168 TGTGGTAGTAAAAGGAACACTACTC 58.248 40.000 10.07 5.84 42.69 2.59
329 347 6.986424 AAAAAGAATAGCGTTCCTTTTTCG 57.014 33.333 13.14 0.00 41.96 3.46
330 348 5.684550 AAAGAATAGCGTTCCTTTTTCGT 57.315 34.783 1.88 0.00 0.00 3.85
395 416 3.632145 GCATATCATTCCTTGAAACCCGT 59.368 43.478 0.00 0.00 38.03 5.28
406 427 1.807742 TGAAACCCGTCTTAATTGCCG 59.192 47.619 0.00 0.00 0.00 5.69
453 474 6.899114 AGCTTATGTTTTCTTTGGTAAGACG 58.101 36.000 0.00 0.00 40.04 4.18
544 580 9.567776 TCACATTAATATGAACCGGTAAATCAT 57.432 29.630 20.92 20.92 37.54 2.45
708 1216 6.458232 TGAAATCCGAAAAGAAAAACCTGA 57.542 33.333 0.00 0.00 0.00 3.86
913 1421 0.179070 GTCGATCCCTTCCTTCTGCC 60.179 60.000 0.00 0.00 0.00 4.85
1164 1674 5.190330 ACTTCCGCCCTTTCCTTATTACTTA 59.810 40.000 0.00 0.00 0.00 2.24
1165 1675 5.286267 TCCGCCCTTTCCTTATTACTTAG 57.714 43.478 0.00 0.00 0.00 2.18
1166 1676 4.102054 TCCGCCCTTTCCTTATTACTTAGG 59.898 45.833 0.00 0.00 0.00 2.69
1167 1677 4.386711 CGCCCTTTCCTTATTACTTAGGG 58.613 47.826 0.00 0.00 43.01 3.53
1171 1681 5.454329 CCCTTTCCTTATTACTTAGGGTCCG 60.454 48.000 0.00 0.00 36.83 4.79
1173 1683 5.859205 TTCCTTATTACTTAGGGTCCGTC 57.141 43.478 0.00 0.00 32.20 4.79
1174 1684 5.134725 TCCTTATTACTTAGGGTCCGTCT 57.865 43.478 0.00 0.00 32.20 4.18
1176 1686 6.856757 TCCTTATTACTTAGGGTCCGTCTAT 58.143 40.000 0.00 0.00 32.20 1.98
1178 1688 6.492772 CCTTATTACTTAGGGTCCGTCTATGT 59.507 42.308 0.00 0.00 0.00 2.29
1179 1689 7.309073 CCTTATTACTTAGGGTCCGTCTATGTC 60.309 44.444 0.00 0.00 0.00 3.06
1180 1690 3.377253 ACTTAGGGTCCGTCTATGTCA 57.623 47.619 0.00 0.00 0.00 3.58
1181 1691 3.022406 ACTTAGGGTCCGTCTATGTCAC 58.978 50.000 0.00 0.00 0.00 3.67
1186 1696 3.117625 AGGGTCCGTCTATGTCACATCTA 60.118 47.826 0.00 0.00 0.00 1.98
1187 1697 3.253677 GGGTCCGTCTATGTCACATCTAG 59.746 52.174 0.00 0.00 0.00 2.43
1188 1698 4.135306 GGTCCGTCTATGTCACATCTAGA 58.865 47.826 0.00 0.00 0.00 2.43
1189 1699 4.762765 GGTCCGTCTATGTCACATCTAGAT 59.237 45.833 0.00 0.00 0.00 1.98
1190 1700 5.335269 GGTCCGTCTATGTCACATCTAGATG 60.335 48.000 27.63 27.63 44.15 2.90
1206 1716 5.116180 TCTAGATGTGAAATAGCAAACCCG 58.884 41.667 0.00 0.00 0.00 5.28
1208 1718 4.839121 AGATGTGAAATAGCAAACCCGTA 58.161 39.130 0.00 0.00 0.00 4.02
1209 1719 5.437060 AGATGTGAAATAGCAAACCCGTAT 58.563 37.500 0.00 0.00 0.00 3.06
1210 1720 5.885912 AGATGTGAAATAGCAAACCCGTATT 59.114 36.000 0.00 0.00 0.00 1.89
1211 1721 7.051623 AGATGTGAAATAGCAAACCCGTATTA 58.948 34.615 0.00 0.00 0.00 0.98
1212 1722 6.425577 TGTGAAATAGCAAACCCGTATTAC 57.574 37.500 0.00 0.00 0.00 1.89
1248 1758 4.593597 TGATGGATTAGTCGTTTTTCGC 57.406 40.909 0.00 0.00 39.67 4.70
1271 1781 5.621329 GCGCAATAAGGTTTGGTAGTTTGAT 60.621 40.000 0.30 0.00 0.00 2.57
1440 1951 0.321919 TTGGAGACATCTGTGCCAGC 60.322 55.000 0.00 0.00 42.32 4.85
1524 2035 1.001745 GTGGAATTTTCACGGTGCGC 61.002 55.000 0.00 0.00 0.00 6.09
1743 2257 5.763698 GGAAAACTCCCATATAGCACCTTAC 59.236 44.000 0.00 0.00 0.00 2.34
1854 2369 2.025863 GCCGTCCTGGGTACTAGCTAA 61.026 57.143 0.00 0.00 34.76 3.09
1899 2414 4.096081 AGTTAGATCTGCTGCAAATGCTTC 59.904 41.667 5.18 0.00 42.66 3.86
1958 2473 6.170506 AGTTTGCACACTTATCGATAAAGGA 58.829 36.000 18.08 7.74 0.00 3.36
1959 2474 6.653320 AGTTTGCACACTTATCGATAAAGGAA 59.347 34.615 18.08 12.44 0.00 3.36
1960 2475 7.336931 AGTTTGCACACTTATCGATAAAGGAAT 59.663 33.333 18.08 1.15 0.00 3.01
1991 2508 3.408634 ACCATTCGACTTGGTTTGGTAG 58.591 45.455 12.42 0.00 45.19 3.18
1996 2513 1.798813 CGACTTGGTTTGGTAGTCAGC 59.201 52.381 0.00 0.00 38.52 4.26
2011 2530 6.775629 TGGTAGTCAGCCTTTTAAGTTTCATT 59.224 34.615 0.00 0.00 0.00 2.57
2014 2533 7.817418 AGTCAGCCTTTTAAGTTTCATTACA 57.183 32.000 0.00 0.00 0.00 2.41
2051 2570 9.543018 GAAGCTGTACATAATTAAGTTCAACAC 57.457 33.333 0.00 0.00 0.00 3.32
2064 2583 1.308047 TCAACACAGAAAGCGCATGT 58.692 45.000 11.47 5.91 0.00 3.21
2100 2619 2.436417 TGCTCCTGTTGGCTGAATAAC 58.564 47.619 0.00 0.00 0.00 1.89
2272 2791 4.689612 TTACTATGCCAAGGTCTCATCC 57.310 45.455 0.00 0.00 0.00 3.51
2275 2794 1.890552 ATGCCAAGGTCTCATCCTCT 58.109 50.000 0.00 0.00 36.74 3.69
2279 2798 2.158971 GCCAAGGTCTCATCCTCTTCTC 60.159 54.545 0.00 0.00 36.74 2.87
2353 3737 7.939782 TGTTTAATGCATTTCTTCTTCTGTGA 58.060 30.769 18.75 0.00 0.00 3.58
2456 5455 4.001652 GACAGTGGCCCTAAAAGTTCTAC 58.998 47.826 0.00 0.00 0.00 2.59
2458 5457 4.842380 ACAGTGGCCCTAAAAGTTCTACTA 59.158 41.667 0.00 0.00 0.00 1.82
2522 5521 7.265673 TGCACTAGAATATGTGTCCTAACTTC 58.734 38.462 0.00 0.00 36.63 3.01
2578 5577 9.023962 TGAGAAATATTTATCAAGTTGTTGGCT 57.976 29.630 20.33 0.29 35.67 4.75
2588 5587 1.760086 TTGTTGGCTGGTGGGGTTG 60.760 57.895 0.00 0.00 0.00 3.77
2613 5612 3.243704 GCATTTTGAACCACAAGTAGCCA 60.244 43.478 0.00 0.00 39.77 4.75
2634 5633 4.021016 CCAACTCCAGTACTCCTATATGCC 60.021 50.000 0.00 0.00 0.00 4.40
2652 5651 1.377202 CGTCCCACTCCCACCATTG 60.377 63.158 0.00 0.00 0.00 2.82
2855 5854 9.036671 GTGATTTCTGTTCTTATCTACCTTAGC 57.963 37.037 0.00 0.00 0.00 3.09
2857 5856 9.825109 GATTTCTGTTCTTATCTACCTTAGCTT 57.175 33.333 0.00 0.00 0.00 3.74
2860 5859 9.654663 TTCTGTTCTTATCTACCTTAGCTTTTC 57.345 33.333 0.00 0.00 0.00 2.29
2861 5860 7.974501 TCTGTTCTTATCTACCTTAGCTTTTCG 59.025 37.037 0.00 0.00 0.00 3.46
2881 5880 4.216708 TCGTTCTACCCCAAAATGGTTTT 58.783 39.130 0.00 0.00 37.31 2.43
2886 5885 5.707495 TCTACCCCAAAATGGTTTTGTACT 58.293 37.500 12.53 0.05 46.53 2.73
2915 5914 4.100189 ACGAGATAGCTAGTCATTTTGGCT 59.900 41.667 0.00 0.00 35.80 4.75
2939 5938 4.189231 GTTGGATTAAGCGGTGTATGACT 58.811 43.478 0.00 0.00 0.00 3.41
2940 5939 4.054780 TGGATTAAGCGGTGTATGACTC 57.945 45.455 0.00 0.00 0.00 3.36
2944 5943 5.241064 GGATTAAGCGGTGTATGACTCTAGA 59.759 44.000 0.00 0.00 0.00 2.43
2949 5948 4.096682 AGCGGTGTATGACTCTAGAGAAAC 59.903 45.833 26.57 16.50 0.00 2.78
2994 5993 3.446161 CAGCAGGATCAATTTGGTGACAT 59.554 43.478 10.52 0.00 41.49 3.06
3002 6001 7.503566 AGGATCAATTTGGTGACATAATCGAAT 59.496 33.333 0.00 0.00 42.32 3.34
3008 6007 7.864108 TTTGGTGACATAATCGAATTCTGAT 57.136 32.000 3.52 5.53 42.32 2.90
3011 6010 8.763049 TGGTGACATAATCGAATTCTGATATC 57.237 34.615 3.52 0.00 33.40 1.63
3025 6025 9.801873 GAATTCTGATATCCTAAGTGATCTAGC 57.198 37.037 0.00 0.00 0.00 3.42
3039 6039 2.783379 TCTAGCCCCAGATGATGACT 57.217 50.000 0.00 0.00 0.00 3.41
3088 6088 1.857965 TAGAGTGTGCAGCAGGATCT 58.142 50.000 0.00 1.61 0.00 2.75
3092 6092 0.801251 GTGTGCAGCAGGATCTGTTC 59.199 55.000 0.00 0.00 36.49 3.18
3107 6107 3.021695 TCTGTTCGAGGATACAATCGGT 58.978 45.455 0.00 0.00 39.38 4.69
3111 6111 3.210232 TCGAGGATACAATCGGTCTCT 57.790 47.619 0.00 0.00 39.38 3.10
3137 6137 8.383175 TGAGATTCTGTGTAACTAAATTTCCCT 58.617 33.333 0.00 0.00 38.04 4.20
3142 6142 9.667107 TTCTGTGTAACTAAATTTCCCTATCAG 57.333 33.333 0.00 0.00 38.04 2.90
3143 6143 8.265055 TCTGTGTAACTAAATTTCCCTATCAGG 58.735 37.037 0.00 0.00 38.04 3.86
3144 6144 8.153221 TGTGTAACTAAATTTCCCTATCAGGA 57.847 34.615 0.00 0.00 35.68 3.86
3152 6161 4.569719 TTTCCCTATCAGGAGTTTGGTC 57.430 45.455 0.00 0.00 37.67 4.02
3159 6168 2.833794 TCAGGAGTTTGGTCGAACAAG 58.166 47.619 16.64 3.69 31.94 3.16
3244 6253 6.433093 GGTTTTACAATGGACACTTGGATAGT 59.567 38.462 0.00 0.00 37.68 2.12
3264 6273 1.906574 TGGTGCAGTTACTAAGAGGGG 59.093 52.381 0.00 0.00 0.00 4.79
3266 6275 0.909623 TGCAGTTACTAAGAGGGGGC 59.090 55.000 0.00 0.00 0.00 5.80
3270 6279 3.391626 GCAGTTACTAAGAGGGGGCTAAT 59.608 47.826 0.00 0.00 0.00 1.73
3314 6324 7.042797 AGTTCATAGTTGAAACAGCAAATGT 57.957 32.000 0.00 0.00 46.97 2.71
3320 6330 9.277565 CATAGTTGAAACAGCAAATGTATACAC 57.722 33.333 7.96 0.00 43.00 2.90
3321 6331 7.270757 AGTTGAAACAGCAAATGTATACACA 57.729 32.000 7.96 0.00 43.00 3.72
3325 6335 8.572828 TGAAACAGCAAATGTATACACAAAAG 57.427 30.769 7.96 0.00 43.00 2.27
3326 6336 7.168972 TGAAACAGCAAATGTATACACAAAAGC 59.831 33.333 7.96 8.39 43.00 3.51
3327 6337 5.469479 ACAGCAAATGTATACACAAAAGCC 58.531 37.500 7.96 0.00 41.60 4.35
3328 6338 5.010516 ACAGCAAATGTATACACAAAAGCCA 59.989 36.000 7.96 0.00 41.60 4.75
3329 6339 6.101332 CAGCAAATGTATACACAAAAGCCAT 58.899 36.000 7.96 0.00 38.42 4.40
3330 6340 6.591062 CAGCAAATGTATACACAAAAGCCATT 59.409 34.615 7.96 0.00 38.42 3.16
3346 6356 2.792116 GCCATTTGCGTTTTCTCGAAAA 59.208 40.909 0.93 0.93 41.60 2.29
3347 6357 3.244111 GCCATTTGCGTTTTCTCGAAAAA 59.756 39.130 6.41 0.00 40.89 1.94
3348 6358 4.084589 GCCATTTGCGTTTTCTCGAAAAAT 60.085 37.500 6.41 0.00 40.89 1.82
3349 6359 5.365133 CCATTTGCGTTTTCTCGAAAAATG 58.635 37.500 6.41 15.04 40.89 2.32
3354 6364 7.769719 TTGCGTTTTCTCGAAAAATGTATAC 57.230 32.000 18.01 0.00 41.37 1.47
3355 6365 6.889494 TGCGTTTTCTCGAAAAATGTATACA 58.111 32.000 8.27 8.27 41.37 2.29
3356 6366 7.523219 TGCGTTTTCTCGAAAAATGTATACAT 58.477 30.769 12.75 12.75 41.37 2.29
3357 6367 8.657729 TGCGTTTTCTCGAAAAATGTATACATA 58.342 29.630 18.56 1.39 41.37 2.29
3358 6368 9.646336 GCGTTTTCTCGAAAAATGTATACATAT 57.354 29.630 18.56 8.34 41.37 1.78
3387 6451 5.645067 CAGATAAACTCAGCAATCAACCTGA 59.355 40.000 0.00 0.00 36.69 3.86
3405 6469 1.699634 TGACTGGGCAAGACTTTAGCT 59.300 47.619 0.00 0.00 0.00 3.32
3408 6472 0.038166 TGGGCAAGACTTTAGCTGGG 59.962 55.000 0.00 0.00 0.00 4.45
3411 6475 2.019984 GGCAAGACTTTAGCTGGGATG 58.980 52.381 0.00 0.00 0.00 3.51
3422 6486 5.912149 TTAGCTGGGATGTCATTAGGAAT 57.088 39.130 0.00 0.00 0.00 3.01
3428 6492 3.416156 GGATGTCATTAGGAATGCCCTC 58.584 50.000 0.00 0.00 43.31 4.30
3431 6495 3.620488 TGTCATTAGGAATGCCCTCAAC 58.380 45.455 0.00 0.00 43.31 3.18
3434 6498 4.462483 GTCATTAGGAATGCCCTCAACAAA 59.538 41.667 0.00 0.00 43.31 2.83
3435 6499 5.127682 GTCATTAGGAATGCCCTCAACAAAT 59.872 40.000 0.00 0.00 43.31 2.32
3436 6500 5.721000 TCATTAGGAATGCCCTCAACAAATT 59.279 36.000 0.00 0.00 43.31 1.82
3444 6510 9.045223 GGAATGCCCTCAACAAATTATTTATTC 57.955 33.333 0.00 0.00 0.00 1.75
3447 6513 7.479980 TGCCCTCAACAAATTATTTATTCTCG 58.520 34.615 0.00 0.00 0.00 4.04
3448 6514 7.122055 TGCCCTCAACAAATTATTTATTCTCGT 59.878 33.333 0.00 0.00 0.00 4.18
3495 6561 6.870965 ACTCTTTTTGATACTGTAGCACTGAG 59.129 38.462 5.09 12.05 0.00 3.35
3510 6577 3.759418 CACTGAGCTCTTGAATTGCATG 58.241 45.455 16.19 0.00 0.00 4.06
3511 6578 3.439129 CACTGAGCTCTTGAATTGCATGA 59.561 43.478 16.19 0.00 0.00 3.07
3542 6609 4.006319 AGAAGGCTTAACTGCTCAATCAC 58.994 43.478 0.00 0.00 0.00 3.06
3543 6610 2.716217 AGGCTTAACTGCTCAATCACC 58.284 47.619 0.00 0.00 0.00 4.02
3596 6663 3.896133 GTCTGCATGCATGGCGGG 61.896 66.667 27.34 8.55 38.20 6.13
3601 6668 2.111669 CATGCATGGCGGGCTCTA 59.888 61.111 19.40 0.00 0.00 2.43
3618 6685 6.127338 CGGGCTCTATTATTCCTGATGATGTA 60.127 42.308 0.00 0.00 0.00 2.29
3630 6697 7.101652 TCCTGATGATGTAGTTCTGACTTAC 57.898 40.000 0.00 0.00 37.33 2.34
3633 6700 8.132362 CCTGATGATGTAGTTCTGACTTACTAC 58.868 40.741 9.98 9.98 44.38 2.73
3634 6701 7.997482 TGATGATGTAGTTCTGACTTACTACC 58.003 38.462 12.99 3.09 43.80 3.18
3635 6702 7.834681 TGATGATGTAGTTCTGACTTACTACCT 59.165 37.037 12.99 5.91 43.80 3.08
3636 6703 7.627298 TGATGTAGTTCTGACTTACTACCTC 57.373 40.000 12.99 12.78 43.80 3.85
3637 6704 7.403671 TGATGTAGTTCTGACTTACTACCTCT 58.596 38.462 16.96 5.50 43.80 3.69
3638 6705 7.337184 TGATGTAGTTCTGACTTACTACCTCTG 59.663 40.741 16.96 0.00 43.80 3.35
3641 6708 6.578163 AGTTCTGACTTACTACCTCTGTTC 57.422 41.667 0.00 0.00 29.87 3.18
3642 6709 6.069331 AGTTCTGACTTACTACCTCTGTTCA 58.931 40.000 0.00 0.00 29.87 3.18
3643 6710 6.722129 AGTTCTGACTTACTACCTCTGTTCAT 59.278 38.462 0.00 0.00 29.87 2.57
3644 6711 7.889073 AGTTCTGACTTACTACCTCTGTTCATA 59.111 37.037 0.00 0.00 29.87 2.15
3645 6712 8.521176 GTTCTGACTTACTACCTCTGTTCATAA 58.479 37.037 0.00 0.00 0.00 1.90
3646 6713 8.645814 TCTGACTTACTACCTCTGTTCATAAA 57.354 34.615 0.00 0.00 0.00 1.40
3647 6714 9.256228 TCTGACTTACTACCTCTGTTCATAAAT 57.744 33.333 0.00 0.00 0.00 1.40
3655 6722 9.367444 ACTACCTCTGTTCATAAATAAAAGACG 57.633 33.333 0.00 0.00 0.00 4.18
3656 6723 9.367444 CTACCTCTGTTCATAAATAAAAGACGT 57.633 33.333 0.00 0.00 0.00 4.34
3657 6724 8.617290 ACCTCTGTTCATAAATAAAAGACGTT 57.383 30.769 0.00 0.00 0.00 3.99
3658 6725 9.063615 ACCTCTGTTCATAAATAAAAGACGTTT 57.936 29.630 0.00 0.00 0.00 3.60
3659 6726 9.893305 CCTCTGTTCATAAATAAAAGACGTTTT 57.107 29.630 0.00 0.00 39.31 2.43
3661 6728 9.672086 TCTGTTCATAAATAAAAGACGTTTTGG 57.328 29.630 0.00 0.00 36.51 3.28
3662 6729 8.288217 TGTTCATAAATAAAAGACGTTTTGGC 57.712 30.769 0.00 0.00 36.51 4.52
3663 6730 7.921214 TGTTCATAAATAAAAGACGTTTTGGCA 59.079 29.630 0.00 0.00 36.51 4.92
3664 6731 8.424731 GTTCATAAATAAAAGACGTTTTGGCAG 58.575 33.333 0.00 0.00 36.51 4.85
3665 6732 7.653647 TCATAAATAAAAGACGTTTTGGCAGT 58.346 30.769 0.00 0.00 36.51 4.40
3666 6733 8.784994 TCATAAATAAAAGACGTTTTGGCAGTA 58.215 29.630 0.00 0.00 36.51 2.74
3667 6734 9.567848 CATAAATAAAAGACGTTTTGGCAGTAT 57.432 29.630 0.00 0.00 36.51 2.12
3670 6737 8.556213 AATAAAAGACGTTTTGGCAGTATAGA 57.444 30.769 0.00 0.00 36.51 1.98
3671 6738 8.732746 ATAAAAGACGTTTTGGCAGTATAGAT 57.267 30.769 0.00 0.00 36.51 1.98
3672 6739 7.448748 AAAAGACGTTTTGGCAGTATAGATT 57.551 32.000 0.00 0.00 34.44 2.40
3673 6740 6.422776 AAGACGTTTTGGCAGTATAGATTG 57.577 37.500 0.00 0.00 0.00 2.67
3674 6741 5.730550 AGACGTTTTGGCAGTATAGATTGA 58.269 37.500 0.00 0.00 0.00 2.57
3675 6742 6.170506 AGACGTTTTGGCAGTATAGATTGAA 58.829 36.000 0.00 0.00 0.00 2.69
3676 6743 6.092259 AGACGTTTTGGCAGTATAGATTGAAC 59.908 38.462 0.00 0.00 0.00 3.18
3677 6744 5.938125 ACGTTTTGGCAGTATAGATTGAACT 59.062 36.000 0.00 0.00 0.00 3.01
3678 6745 6.128282 ACGTTTTGGCAGTATAGATTGAACTG 60.128 38.462 0.00 0.00 42.80 3.16
3679 6746 6.128282 CGTTTTGGCAGTATAGATTGAACTGT 60.128 38.462 3.89 0.00 42.10 3.55
3680 6747 6.985188 TTTGGCAGTATAGATTGAACTGTC 57.015 37.500 0.00 0.00 44.26 3.51
3683 6750 6.985188 GGCAGTATAGATTGAACTGTCAAA 57.015 37.500 1.68 0.00 46.66 2.69
3684 6751 7.377766 GGCAGTATAGATTGAACTGTCAAAA 57.622 36.000 1.68 0.00 46.66 2.44
3685 6752 7.244192 GGCAGTATAGATTGAACTGTCAAAAC 58.756 38.462 1.68 0.00 46.66 2.43
3686 6753 6.955963 GCAGTATAGATTGAACTGTCAAAACG 59.044 38.462 3.89 0.00 46.66 3.60
3687 6754 7.360101 GCAGTATAGATTGAACTGTCAAAACGT 60.360 37.037 3.89 0.00 46.66 3.99
3688 6755 8.162880 CAGTATAGATTGAACTGTCAAAACGTC 58.837 37.037 0.00 0.00 46.66 4.34
3689 6756 8.088981 AGTATAGATTGAACTGTCAAAACGTCT 58.911 33.333 0.00 0.00 46.66 4.18
3690 6757 7.730364 ATAGATTGAACTGTCAAAACGTCTT 57.270 32.000 0.00 0.00 46.66 3.01
3691 6758 8.827177 ATAGATTGAACTGTCAAAACGTCTTA 57.173 30.769 0.00 0.00 46.66 2.10
3692 6759 7.178712 AGATTGAACTGTCAAAACGTCTTAG 57.821 36.000 0.00 0.00 46.66 2.18
3693 6760 6.984474 AGATTGAACTGTCAAAACGTCTTAGA 59.016 34.615 0.00 0.00 46.66 2.10
3694 6761 7.657761 AGATTGAACTGTCAAAACGTCTTAGAT 59.342 33.333 0.00 0.00 46.66 1.98
3695 6762 7.548196 TTGAACTGTCAAAACGTCTTAGATT 57.452 32.000 0.00 0.00 40.87 2.40
3696 6763 7.548196 TGAACTGTCAAAACGTCTTAGATTT 57.452 32.000 0.00 0.00 0.00 2.17
3697 6764 8.651391 TGAACTGTCAAAACGTCTTAGATTTA 57.349 30.769 0.00 0.00 0.00 1.40
3698 6765 8.761497 TGAACTGTCAAAACGTCTTAGATTTAG 58.239 33.333 0.00 0.00 0.00 1.85
3699 6766 7.653767 ACTGTCAAAACGTCTTAGATTTAGG 57.346 36.000 0.00 0.00 0.00 2.69
3700 6767 7.439381 ACTGTCAAAACGTCTTAGATTTAGGA 58.561 34.615 0.00 0.00 0.00 2.94
3701 6768 7.929785 ACTGTCAAAACGTCTTAGATTTAGGAA 59.070 33.333 0.00 0.00 0.00 3.36
3702 6769 8.080083 TGTCAAAACGTCTTAGATTTAGGAAC 57.920 34.615 0.00 0.00 0.00 3.62
3703 6770 7.095940 TGTCAAAACGTCTTAGATTTAGGAACG 60.096 37.037 0.00 0.00 0.00 3.95
3704 6771 6.366877 TCAAAACGTCTTAGATTTAGGAACGG 59.633 38.462 0.00 0.00 0.00 4.44
3705 6772 5.649782 AACGTCTTAGATTTAGGAACGGA 57.350 39.130 0.00 0.00 0.00 4.69
3706 6773 5.246145 ACGTCTTAGATTTAGGAACGGAG 57.754 43.478 0.00 0.00 0.00 4.63
3707 6774 4.097589 ACGTCTTAGATTTAGGAACGGAGG 59.902 45.833 0.00 0.00 0.00 4.30
3708 6775 4.499357 CGTCTTAGATTTAGGAACGGAGGG 60.499 50.000 0.00 0.00 0.00 4.30
3709 6776 4.648307 GTCTTAGATTTAGGAACGGAGGGA 59.352 45.833 0.00 0.00 0.00 4.20
3710 6777 4.894114 TCTTAGATTTAGGAACGGAGGGAG 59.106 45.833 0.00 0.00 0.00 4.30
3711 6778 3.117552 AGATTTAGGAACGGAGGGAGT 57.882 47.619 0.00 0.00 0.00 3.85
3712 6779 4.261411 AGATTTAGGAACGGAGGGAGTA 57.739 45.455 0.00 0.00 0.00 2.59
3713 6780 4.216708 AGATTTAGGAACGGAGGGAGTAG 58.783 47.826 0.00 0.00 0.00 2.57
3714 6781 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
3715 6782 4.591321 TTTAGGAACGGAGGGAGTAGTA 57.409 45.455 0.00 0.00 0.00 1.82
3716 6783 2.732844 AGGAACGGAGGGAGTAGTAG 57.267 55.000 0.00 0.00 0.00 2.57
3717 6784 1.921748 AGGAACGGAGGGAGTAGTAGT 59.078 52.381 0.00 0.00 0.00 2.73
3718 6785 2.022934 GGAACGGAGGGAGTAGTAGTG 58.977 57.143 0.00 0.00 0.00 2.74
3719 6786 2.620108 GGAACGGAGGGAGTAGTAGTGT 60.620 54.545 0.00 0.00 0.00 3.55
3720 6787 3.370953 GGAACGGAGGGAGTAGTAGTGTA 60.371 52.174 0.00 0.00 0.00 2.90
3721 6788 3.274095 ACGGAGGGAGTAGTAGTGTAC 57.726 52.381 0.00 0.00 0.00 2.90
3743 6810 4.835615 ACTTCTGTCATTCTGAGTACTGGT 59.164 41.667 0.00 0.00 0.00 4.00
3744 6811 4.790765 TCTGTCATTCTGAGTACTGGTG 57.209 45.455 0.00 0.00 0.00 4.17
3745 6812 3.056536 TCTGTCATTCTGAGTACTGGTGC 60.057 47.826 0.00 0.00 0.00 5.01
3746 6813 2.263077 GTCATTCTGAGTACTGGTGCG 58.737 52.381 0.00 0.00 0.00 5.34
3748 6815 0.108138 ATTCTGAGTACTGGTGCGGC 60.108 55.000 0.00 0.00 0.00 6.53
3749 6816 1.468506 TTCTGAGTACTGGTGCGGCA 61.469 55.000 0.00 0.00 0.00 5.69
3751 6818 1.291877 CTGAGTACTGGTGCGGCAAC 61.292 60.000 11.95 11.95 0.00 4.17
3752 6819 1.301401 GAGTACTGGTGCGGCAACA 60.301 57.895 21.00 21.00 0.00 3.33
3753 6820 0.882927 GAGTACTGGTGCGGCAACAA 60.883 55.000 22.53 5.09 27.52 2.83
3754 6821 0.250727 AGTACTGGTGCGGCAACAAT 60.251 50.000 22.53 15.36 27.52 2.71
3791 6858 8.622157 CATCTGTTTGATGCTATCTTCTGATTT 58.378 33.333 0.00 0.00 44.96 2.17
3797 6864 5.530171 TGATGCTATCTTCTGATTTTCCTGC 59.470 40.000 0.00 0.00 34.32 4.85
3798 6865 5.108187 TGCTATCTTCTGATTTTCCTGCT 57.892 39.130 0.00 0.00 34.32 4.24
3824 6914 2.504367 GTTGATGCAGTGGTGTACCTT 58.496 47.619 2.32 0.00 36.82 3.50
3833 6923 2.025418 GGTGTACCTTGTGGACGCG 61.025 63.158 3.53 3.53 37.04 6.01
4153 7243 1.617322 GGGGGAGTGGTGAAAGAAAC 58.383 55.000 0.00 0.00 0.00 2.78
4661 7763 6.053632 TCTTGGACTTGCTCATGAATTCTA 57.946 37.500 7.05 0.00 0.00 2.10
4770 7875 4.685924 AGAATTTAAGCATGGCAAATCGG 58.314 39.130 0.00 0.00 0.00 4.18
4837 7942 3.158676 GGCGATGGTCCTAGACTCTATT 58.841 50.000 0.00 0.00 32.47 1.73
4859 7964 0.405585 CATTGAGGTGTGGGGAGGTT 59.594 55.000 0.00 0.00 0.00 3.50
4914 8019 9.026074 TCAGTTTTTCAACATTATTTTTCGTCC 57.974 29.630 0.00 0.00 35.05 4.79
4936 8041 5.957168 TCCAAATAAGATGCCCAAAGAATGA 59.043 36.000 0.00 0.00 0.00 2.57
4955 8060 5.646577 ATGAAGGCGGAGTATATCAGTAC 57.353 43.478 0.00 0.00 0.00 2.73
4959 8064 5.188988 AGGCGGAGTATATCAGTACCATA 57.811 43.478 0.00 0.00 0.00 2.74
5064 8176 9.030452 TCAGTTTGGTTTTATGCCTAATACAAT 57.970 29.630 5.11 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.457496 CATCACCTGACGGCGGCT 62.457 66.667 16.45 0.00 0.00 5.52
75 76 2.630098 TCTCCTTAGATCCAGATTGCGG 59.370 50.000 0.00 0.00 0.00 5.69
140 141 1.380785 TTCGACCTCCCGCATACCT 60.381 57.895 0.00 0.00 0.00 3.08
170 171 0.740737 CCCTCCCGCATGATGAAAAC 59.259 55.000 0.00 0.00 0.00 2.43
179 180 1.610673 ATCGCTATCCCTCCCGCAT 60.611 57.895 0.00 0.00 0.00 4.73
205 206 3.302347 CTTCTGCCCGTCCTTCGCT 62.302 63.158 0.00 0.00 38.35 4.93
206 207 2.815647 CTTCTGCCCGTCCTTCGC 60.816 66.667 0.00 0.00 38.35 4.70
207 208 2.125512 CCTTCTGCCCGTCCTTCG 60.126 66.667 0.00 0.00 39.52 3.79
223 224 3.558533 CCTTTTACTACCACAGGACCACC 60.559 52.174 0.00 0.00 0.00 4.61
263 264 8.896722 AGGTAAGGAGTGAAATCTCTACTTAA 57.103 34.615 15.29 2.45 41.68 1.85
264 265 8.337739 AGAGGTAAGGAGTGAAATCTCTACTTA 58.662 37.037 11.37 11.37 40.16 2.24
265 266 7.186268 AGAGGTAAGGAGTGAAATCTCTACTT 58.814 38.462 13.00 13.00 41.79 2.24
329 347 3.494626 TGAATGAAGCACTTCGTCTGAAC 59.505 43.478 5.61 0.00 42.28 3.18
330 348 3.727726 TGAATGAAGCACTTCGTCTGAA 58.272 40.909 5.61 0.00 42.28 3.02
338 356 5.859205 AAAGGAAGTTGAATGAAGCACTT 57.141 34.783 0.00 0.00 0.00 3.16
395 416 8.506168 AAGTCAATAAAGATCGGCAATTAAGA 57.494 30.769 0.00 0.00 0.00 2.10
630 700 9.394477 GTTACACCATGTATTTTCTGAAGTTTC 57.606 33.333 0.00 0.00 32.20 2.78
708 1216 3.820557 TGTTTCTAGCAAGGAAAGCACT 58.179 40.909 0.00 0.00 34.02 4.40
1164 1674 2.032620 GATGTGACATAGACGGACCCT 58.967 52.381 0.00 0.00 0.00 4.34
1165 1675 2.032620 AGATGTGACATAGACGGACCC 58.967 52.381 0.00 0.00 0.00 4.46
1166 1676 4.135306 TCTAGATGTGACATAGACGGACC 58.865 47.826 0.00 0.00 0.00 4.46
1167 1677 5.694816 CATCTAGATGTGACATAGACGGAC 58.305 45.833 22.42 0.00 34.23 4.79
1181 1691 6.293081 CGGGTTTGCTATTTCACATCTAGATG 60.293 42.308 27.63 27.63 44.15 2.90
1186 1696 3.686016 ACGGGTTTGCTATTTCACATCT 58.314 40.909 0.00 0.00 0.00 2.90
1187 1697 5.751243 ATACGGGTTTGCTATTTCACATC 57.249 39.130 0.00 0.00 0.00 3.06
1188 1698 6.826741 AGTAATACGGGTTTGCTATTTCACAT 59.173 34.615 0.00 0.00 0.00 3.21
1189 1699 6.174760 AGTAATACGGGTTTGCTATTTCACA 58.825 36.000 0.00 0.00 0.00 3.58
1190 1700 6.673154 AGTAATACGGGTTTGCTATTTCAC 57.327 37.500 0.00 0.00 0.00 3.18
1193 1703 8.741603 ACATAAGTAATACGGGTTTGCTATTT 57.258 30.769 0.00 0.00 0.00 1.40
1194 1704 8.741603 AACATAAGTAATACGGGTTTGCTATT 57.258 30.769 0.00 0.00 0.00 1.73
1195 1705 7.443272 GGAACATAAGTAATACGGGTTTGCTAT 59.557 37.037 0.00 0.00 0.00 2.97
1197 1707 5.587443 GGAACATAAGTAATACGGGTTTGCT 59.413 40.000 0.00 0.00 0.00 3.91
1198 1708 5.587443 AGGAACATAAGTAATACGGGTTTGC 59.413 40.000 0.00 0.00 0.00 3.68
1199 1709 7.619964 AAGGAACATAAGTAATACGGGTTTG 57.380 36.000 0.00 0.00 0.00 2.93
1248 1758 5.365403 TCAAACTACCAAACCTTATTGCG 57.635 39.130 0.00 0.00 0.00 4.85
1271 1781 3.874383 TCACAATTCCTCCAAACCTCA 57.126 42.857 0.00 0.00 0.00 3.86
1410 1921 7.066766 GCACAGATGTCTCCAAATCTAAAATCT 59.933 37.037 0.00 0.00 31.87 2.40
1440 1951 3.838120 TCGCCGCTAAGATGAATATCTG 58.162 45.455 0.00 0.00 42.80 2.90
1445 1956 1.683917 ACTCTCGCCGCTAAGATGAAT 59.316 47.619 0.00 0.00 0.00 2.57
1743 2257 6.308766 CGGATTACTGGAAGAAGCAAAATTTG 59.691 38.462 0.57 0.57 37.43 2.32
1854 2369 2.034124 GCATGCCCCTGAATTACATGT 58.966 47.619 6.36 2.69 40.15 3.21
1958 2473 7.538575 CCAAGTCGAATGGTAAAAAGATCATT 58.461 34.615 9.78 0.00 33.08 2.57
1959 2474 7.088589 CCAAGTCGAATGGTAAAAAGATCAT 57.911 36.000 9.78 0.00 33.08 2.45
1960 2475 6.494893 CCAAGTCGAATGGTAAAAAGATCA 57.505 37.500 9.78 0.00 33.08 2.92
1972 2489 4.062293 TGACTACCAAACCAAGTCGAATG 58.938 43.478 0.00 0.00 42.05 2.67
1975 2492 2.547218 GCTGACTACCAAACCAAGTCGA 60.547 50.000 0.00 0.00 42.05 4.20
1991 2508 9.476202 AATTGTAATGAAACTTAAAAGGCTGAC 57.524 29.630 0.00 0.00 0.00 3.51
2040 2559 2.939756 TGCGCTTTCTGTGTTGAACTTA 59.060 40.909 9.73 0.00 0.00 2.24
2051 2570 2.912967 GTGATTTGACATGCGCTTTCTG 59.087 45.455 9.73 3.53 0.00 3.02
2064 2583 5.163426 ACAGGAGCAAAAACATGTGATTTGA 60.163 36.000 28.26 0.00 36.41 2.69
2079 2598 2.819608 GTTATTCAGCCAACAGGAGCAA 59.180 45.455 0.00 0.00 0.00 3.91
2100 2619 4.827284 AGGAACACAAACCCAAGTAAGATG 59.173 41.667 0.00 0.00 0.00 2.90
2188 2707 6.409524 TCAAATGCCTTGAACTTGATCTTT 57.590 33.333 0.00 0.00 41.21 2.52
2353 3737 9.672673 ACAGCACAATATTTCTAGAAACTACAT 57.327 29.630 19.94 6.77 32.51 2.29
2440 5439 7.392393 TGACATTTTAGTAGAACTTTTAGGGCC 59.608 37.037 0.00 0.00 0.00 5.80
2456 5455 8.668510 ACTAGCCACTGATAATGACATTTTAG 57.331 34.615 5.89 5.41 0.00 1.85
2458 5457 8.267894 ACTACTAGCCACTGATAATGACATTTT 58.732 33.333 5.89 0.00 0.00 1.82
2512 5511 1.975680 TGTGGGGACAGAAGTTAGGAC 59.024 52.381 0.00 0.00 44.46 3.85
2513 5512 2.409064 TGTGGGGACAGAAGTTAGGA 57.591 50.000 0.00 0.00 44.46 2.94
2522 5521 1.073125 TGGTGTTACATGTGGGGACAG 59.927 52.381 9.11 0.00 44.46 3.51
2578 5577 0.692419 AAAATGCACCAACCCCACCA 60.692 50.000 0.00 0.00 0.00 4.17
2588 5587 3.177997 ACTTGTGGTTCAAAATGCACC 57.822 42.857 0.00 0.00 34.15 5.01
2613 5612 3.827302 CGGCATATAGGAGTACTGGAGTT 59.173 47.826 0.00 0.00 0.00 3.01
2634 5633 1.377202 CAATGGTGGGAGTGGGACG 60.377 63.158 0.00 0.00 0.00 4.79
2748 5747 7.218228 TCAAAAGATTATTGTGCACACAGAT 57.782 32.000 21.56 13.50 42.94 2.90
2768 5767 6.800072 AAGGAAAACCACTGGTATTTCAAA 57.200 33.333 23.22 0.00 35.97 2.69
2836 5835 7.760340 ACGAAAAGCTAAGGTAGATAAGAACAG 59.240 37.037 0.00 0.00 0.00 3.16
2855 5854 4.279922 ACCATTTTGGGGTAGAACGAAAAG 59.720 41.667 0.00 0.00 43.37 2.27
2857 5856 3.834938 ACCATTTTGGGGTAGAACGAAA 58.165 40.909 0.00 0.00 43.37 3.46
2860 5859 4.303282 CAAAACCATTTTGGGGTAGAACG 58.697 43.478 6.20 0.00 44.75 3.95
2897 5896 5.126061 CCAACAAGCCAAAATGACTAGCTAT 59.874 40.000 0.00 0.00 32.39 2.97
2915 5914 4.393680 GTCATACACCGCTTAATCCAACAA 59.606 41.667 0.00 0.00 0.00 2.83
2944 5943 9.950496 AACACTCTGATGAATATAACTGTTTCT 57.050 29.630 0.00 0.00 0.00 2.52
2949 5948 7.543947 TGCAACACTCTGATGAATATAACTG 57.456 36.000 0.00 0.00 0.00 3.16
3002 6001 6.665680 GGGCTAGATCACTTAGGATATCAGAA 59.334 42.308 4.83 0.00 0.00 3.02
3008 6007 4.357097 TCTGGGGCTAGATCACTTAGGATA 59.643 45.833 0.00 0.00 0.00 2.59
3011 6010 2.964209 TCTGGGGCTAGATCACTTAGG 58.036 52.381 0.00 0.00 0.00 2.69
3025 6025 3.209410 GCTAACAAGTCATCATCTGGGG 58.791 50.000 0.00 0.00 0.00 4.96
3088 6088 3.021695 AGACCGATTGTATCCTCGAACA 58.978 45.455 0.00 0.00 37.05 3.18
3092 6092 2.879026 TCAGAGACCGATTGTATCCTCG 59.121 50.000 0.00 0.00 35.76 4.63
3111 6111 8.383175 AGGGAAATTTAGTTACACAGAATCTCA 58.617 33.333 0.00 0.00 0.00 3.27
3134 6134 2.108168 TCGACCAAACTCCTGATAGGG 58.892 52.381 0.00 0.00 35.59 3.53
3137 6137 4.562757 CCTTGTTCGACCAAACTCCTGATA 60.563 45.833 0.00 0.00 0.00 2.15
3139 6139 2.484770 CCTTGTTCGACCAAACTCCTGA 60.485 50.000 0.00 0.00 0.00 3.86
3141 6141 1.202770 CCCTTGTTCGACCAAACTCCT 60.203 52.381 0.00 0.00 0.00 3.69
3142 6142 1.235724 CCCTTGTTCGACCAAACTCC 58.764 55.000 0.00 0.00 0.00 3.85
3143 6143 1.235724 CCCCTTGTTCGACCAAACTC 58.764 55.000 0.00 0.00 0.00 3.01
3144 6144 0.179001 CCCCCTTGTTCGACCAAACT 60.179 55.000 0.00 0.00 0.00 2.66
3177 6186 1.304713 CCCTTTGCCAGCACCAGAT 60.305 57.895 0.00 0.00 0.00 2.90
3202 6211 4.591072 TAAAACCAATTTGACCCTTCTGGG 59.409 41.667 0.00 0.00 44.54 4.45
3213 6222 7.254727 CCAAGTGTCCATTGTAAAACCAATTTG 60.255 37.037 0.00 0.00 32.81 2.32
3244 6253 1.906574 CCCCTCTTAGTAACTGCACCA 59.093 52.381 0.00 0.00 0.00 4.17
3251 6260 5.510349 CCGTTATTAGCCCCCTCTTAGTAAC 60.510 48.000 0.00 0.00 0.00 2.50
3264 6273 0.106868 ACCCCAAGCCGTTATTAGCC 60.107 55.000 0.00 0.00 0.00 3.93
3266 6275 4.411256 TTCTACCCCAAGCCGTTATTAG 57.589 45.455 0.00 0.00 0.00 1.73
3270 6279 3.776417 ACTTATTCTACCCCAAGCCGTTA 59.224 43.478 0.00 0.00 0.00 3.18
3320 6330 3.361917 CGAGAAAACGCAAATGGCTTTTG 60.362 43.478 18.52 18.52 42.45 2.44
3321 6331 2.794350 CGAGAAAACGCAAATGGCTTTT 59.206 40.909 0.00 0.00 44.85 2.27
3325 6335 2.044888 TTCGAGAAAACGCAAATGGC 57.955 45.000 0.00 0.00 39.90 4.40
3326 6336 5.051106 ACATTTTTCGAGAAAACGCAAATGG 60.051 36.000 17.16 6.73 41.80 3.16
3327 6337 5.961810 ACATTTTTCGAGAAAACGCAAATG 58.038 33.333 10.18 12.35 42.38 2.32
3328 6338 7.867445 ATACATTTTTCGAGAAAACGCAAAT 57.133 28.000 10.18 0.00 39.70 2.32
3329 6339 7.856398 TGTATACATTTTTCGAGAAAACGCAAA 59.144 29.630 10.18 0.00 39.70 3.68
3330 6340 7.353497 TGTATACATTTTTCGAGAAAACGCAA 58.647 30.769 10.18 0.00 39.70 4.85
3358 6368 9.494271 GGTTGATTGCTGAGTTTATCTGATATA 57.506 33.333 0.00 0.00 0.00 0.86
3359 6369 8.216423 AGGTTGATTGCTGAGTTTATCTGATAT 58.784 33.333 0.00 0.00 0.00 1.63
3387 6451 1.271597 CCAGCTAAAGTCTTGCCCAGT 60.272 52.381 0.00 0.00 0.00 4.00
3405 6469 3.228188 GGCATTCCTAATGACATCCCA 57.772 47.619 3.86 0.00 46.47 4.37
3422 6486 7.122055 ACGAGAATAAATAATTTGTTGAGGGCA 59.878 33.333 0.00 0.00 0.00 5.36
3465 6531 9.804758 GTGCTACAGTATCAAAAAGAGTACTAT 57.195 33.333 0.00 0.00 0.00 2.12
3466 6532 9.021807 AGTGCTACAGTATCAAAAAGAGTACTA 57.978 33.333 0.00 0.00 28.61 1.82
3467 6533 7.815068 CAGTGCTACAGTATCAAAAAGAGTACT 59.185 37.037 0.00 0.00 0.00 2.73
3468 6534 7.813148 TCAGTGCTACAGTATCAAAAAGAGTAC 59.187 37.037 0.00 0.00 0.00 2.73
3469 6535 7.892609 TCAGTGCTACAGTATCAAAAAGAGTA 58.107 34.615 0.00 0.00 0.00 2.59
3470 6536 6.759272 TCAGTGCTACAGTATCAAAAAGAGT 58.241 36.000 0.00 0.00 0.00 3.24
3471 6537 6.183360 GCTCAGTGCTACAGTATCAAAAAGAG 60.183 42.308 0.00 0.00 38.95 2.85
3472 6538 5.639506 GCTCAGTGCTACAGTATCAAAAAGA 59.360 40.000 0.00 0.00 38.95 2.52
3473 6539 5.862811 GCTCAGTGCTACAGTATCAAAAAG 58.137 41.667 0.00 0.00 38.95 2.27
3563 6630 7.930865 TGCATGCAGACAACACAAGTATATATA 59.069 33.333 18.46 0.00 0.00 0.86
3564 6631 6.767423 TGCATGCAGACAACACAAGTATATAT 59.233 34.615 18.46 0.00 0.00 0.86
3565 6632 6.112058 TGCATGCAGACAACACAAGTATATA 58.888 36.000 18.46 0.00 0.00 0.86
3566 6633 4.943093 TGCATGCAGACAACACAAGTATAT 59.057 37.500 18.46 0.00 0.00 0.86
3573 6640 0.599060 CCATGCATGCAGACAACACA 59.401 50.000 26.69 0.00 0.00 3.72
3574 6641 0.734942 GCCATGCATGCAGACAACAC 60.735 55.000 26.69 7.16 0.00 3.32
3596 6663 9.364989 GAACTACATCATCAGGAATAATAGAGC 57.635 37.037 0.00 0.00 0.00 4.09
3601 6668 8.932610 AGTCAGAACTACATCATCAGGAATAAT 58.067 33.333 0.00 0.00 32.59 1.28
3618 6685 6.069331 TGAACAGAGGTAGTAAGTCAGAACT 58.931 40.000 0.00 0.00 37.32 3.01
3630 6697 9.367444 ACGTCTTTTATTTATGAACAGAGGTAG 57.633 33.333 0.00 0.00 0.00 3.18
3633 6700 9.893305 AAAACGTCTTTTATTTATGAACAGAGG 57.107 29.630 0.00 0.00 0.00 3.69
3635 6702 9.672086 CCAAAACGTCTTTTATTTATGAACAGA 57.328 29.630 0.00 0.00 0.00 3.41
3636 6703 8.424731 GCCAAAACGTCTTTTATTTATGAACAG 58.575 33.333 0.00 0.00 0.00 3.16
3637 6704 7.921214 TGCCAAAACGTCTTTTATTTATGAACA 59.079 29.630 0.00 0.00 0.00 3.18
3638 6705 8.288217 TGCCAAAACGTCTTTTATTTATGAAC 57.712 30.769 0.00 0.00 0.00 3.18
3641 6708 7.867445 ACTGCCAAAACGTCTTTTATTTATG 57.133 32.000 0.00 0.00 0.00 1.90
3644 6711 9.005777 TCTATACTGCCAAAACGTCTTTTATTT 57.994 29.630 0.00 0.00 0.00 1.40
3645 6712 8.556213 TCTATACTGCCAAAACGTCTTTTATT 57.444 30.769 0.00 0.00 0.00 1.40
3646 6713 8.732746 ATCTATACTGCCAAAACGTCTTTTAT 57.267 30.769 0.00 0.00 0.00 1.40
3647 6714 8.447833 CAATCTATACTGCCAAAACGTCTTTTA 58.552 33.333 0.00 0.00 0.00 1.52
3648 6715 7.174253 TCAATCTATACTGCCAAAACGTCTTTT 59.826 33.333 0.00 0.00 0.00 2.27
3649 6716 6.653320 TCAATCTATACTGCCAAAACGTCTTT 59.347 34.615 0.00 0.00 0.00 2.52
3650 6717 6.170506 TCAATCTATACTGCCAAAACGTCTT 58.829 36.000 0.00 0.00 0.00 3.01
3651 6718 5.730550 TCAATCTATACTGCCAAAACGTCT 58.269 37.500 0.00 0.00 0.00 4.18
3652 6719 6.092259 AGTTCAATCTATACTGCCAAAACGTC 59.908 38.462 0.00 0.00 0.00 4.34
3653 6720 5.938125 AGTTCAATCTATACTGCCAAAACGT 59.062 36.000 0.00 0.00 0.00 3.99
3654 6721 6.128282 ACAGTTCAATCTATACTGCCAAAACG 60.128 38.462 0.00 0.00 42.28 3.60
3655 6722 7.094805 TGACAGTTCAATCTATACTGCCAAAAC 60.095 37.037 0.00 0.00 42.28 2.43
3656 6723 6.939730 TGACAGTTCAATCTATACTGCCAAAA 59.060 34.615 0.00 0.00 42.28 2.44
3657 6724 6.472016 TGACAGTTCAATCTATACTGCCAAA 58.528 36.000 0.00 0.00 42.28 3.28
3658 6725 6.048732 TGACAGTTCAATCTATACTGCCAA 57.951 37.500 0.00 0.00 42.28 4.52
3659 6726 5.675684 TGACAGTTCAATCTATACTGCCA 57.324 39.130 0.00 0.00 42.28 4.92
3660 6727 6.985188 TTTGACAGTTCAATCTATACTGCC 57.015 37.500 0.00 0.00 41.50 4.85
3661 6728 6.955963 CGTTTTGACAGTTCAATCTATACTGC 59.044 38.462 0.00 0.00 41.50 4.40
3662 6729 8.018677 ACGTTTTGACAGTTCAATCTATACTG 57.981 34.615 0.00 0.00 41.50 2.74
3663 6730 8.088981 AGACGTTTTGACAGTTCAATCTATACT 58.911 33.333 0.00 0.00 41.50 2.12
3664 6731 8.240883 AGACGTTTTGACAGTTCAATCTATAC 57.759 34.615 0.00 0.00 41.50 1.47
3665 6732 8.827177 AAGACGTTTTGACAGTTCAATCTATA 57.173 30.769 0.00 0.00 41.50 1.31
3666 6733 7.730364 AAGACGTTTTGACAGTTCAATCTAT 57.270 32.000 0.00 0.00 41.50 1.98
3667 6734 8.139350 TCTAAGACGTTTTGACAGTTCAATCTA 58.861 33.333 0.83 0.00 41.50 1.98
3668 6735 6.984474 TCTAAGACGTTTTGACAGTTCAATCT 59.016 34.615 0.83 0.00 41.50 2.40
3669 6736 7.173863 TCTAAGACGTTTTGACAGTTCAATC 57.826 36.000 0.83 0.00 41.50 2.67
3670 6737 7.730364 ATCTAAGACGTTTTGACAGTTCAAT 57.270 32.000 0.83 0.00 41.50 2.57
3671 6738 7.548196 AATCTAAGACGTTTTGACAGTTCAA 57.452 32.000 0.83 0.00 40.14 2.69
3672 6739 7.548196 AAATCTAAGACGTTTTGACAGTTCA 57.452 32.000 0.83 0.00 0.00 3.18
3673 6740 8.221766 CCTAAATCTAAGACGTTTTGACAGTTC 58.778 37.037 0.83 0.00 0.00 3.01
3674 6741 7.929785 TCCTAAATCTAAGACGTTTTGACAGTT 59.070 33.333 0.83 0.00 0.00 3.16
3675 6742 7.439381 TCCTAAATCTAAGACGTTTTGACAGT 58.561 34.615 0.83 0.00 0.00 3.55
3676 6743 7.884816 TCCTAAATCTAAGACGTTTTGACAG 57.115 36.000 0.83 0.00 0.00 3.51
3677 6744 7.095940 CGTTCCTAAATCTAAGACGTTTTGACA 60.096 37.037 0.83 0.00 0.00 3.58
3678 6745 7.225397 CGTTCCTAAATCTAAGACGTTTTGAC 58.775 38.462 0.83 0.00 0.00 3.18
3679 6746 6.366877 CCGTTCCTAAATCTAAGACGTTTTGA 59.633 38.462 0.83 0.02 0.00 2.69
3680 6747 6.366877 TCCGTTCCTAAATCTAAGACGTTTTG 59.633 38.462 0.83 0.00 0.00 2.44
3681 6748 6.458210 TCCGTTCCTAAATCTAAGACGTTTT 58.542 36.000 0.00 0.00 0.00 2.43
3682 6749 6.029346 TCCGTTCCTAAATCTAAGACGTTT 57.971 37.500 0.00 0.00 0.00 3.60
3683 6750 5.393896 CCTCCGTTCCTAAATCTAAGACGTT 60.394 44.000 0.00 0.00 0.00 3.99
3684 6751 4.097589 CCTCCGTTCCTAAATCTAAGACGT 59.902 45.833 0.00 0.00 0.00 4.34
3685 6752 4.499357 CCCTCCGTTCCTAAATCTAAGACG 60.499 50.000 0.00 0.00 0.00 4.18
3686 6753 4.648307 TCCCTCCGTTCCTAAATCTAAGAC 59.352 45.833 0.00 0.00 0.00 3.01
3687 6754 4.875389 TCCCTCCGTTCCTAAATCTAAGA 58.125 43.478 0.00 0.00 0.00 2.10
3688 6755 4.650131 ACTCCCTCCGTTCCTAAATCTAAG 59.350 45.833 0.00 0.00 0.00 2.18
3689 6756 4.617593 ACTCCCTCCGTTCCTAAATCTAA 58.382 43.478 0.00 0.00 0.00 2.10
3690 6757 4.261411 ACTCCCTCCGTTCCTAAATCTA 57.739 45.455 0.00 0.00 0.00 1.98
3691 6758 3.117552 ACTCCCTCCGTTCCTAAATCT 57.882 47.619 0.00 0.00 0.00 2.40
3692 6759 3.959449 ACTACTCCCTCCGTTCCTAAATC 59.041 47.826 0.00 0.00 0.00 2.17
3693 6760 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3694 6761 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3695 6762 3.525199 ACTACTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
3696 6763 3.118112 CACTACTACTCCCTCCGTTCCTA 60.118 52.174 0.00 0.00 0.00 2.94
3697 6764 1.921748 ACTACTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
3698 6765 2.022934 CACTACTACTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
3699 6766 2.720915 ACACTACTACTCCCTCCGTTC 58.279 52.381 0.00 0.00 0.00 3.95
3700 6767 2.895242 ACACTACTACTCCCTCCGTT 57.105 50.000 0.00 0.00 0.00 4.44
3701 6768 2.843113 AGTACACTACTACTCCCTCCGT 59.157 50.000 0.00 0.00 37.23 4.69
3702 6769 3.557228 AGTACACTACTACTCCCTCCG 57.443 52.381 0.00 0.00 37.23 4.63
3703 6770 4.883006 CAGAAGTACACTACTACTCCCTCC 59.117 50.000 0.00 0.00 38.26 4.30
3704 6771 5.499313 ACAGAAGTACACTACTACTCCCTC 58.501 45.833 0.00 0.00 38.26 4.30
3705 6772 5.013913 TGACAGAAGTACACTACTACTCCCT 59.986 44.000 0.00 0.00 38.26 4.20
3706 6773 5.251764 TGACAGAAGTACACTACTACTCCC 58.748 45.833 0.00 0.00 38.26 4.30
3707 6774 7.337436 AGAATGACAGAAGTACACTACTACTCC 59.663 40.741 0.00 0.00 38.26 3.85
3708 6775 8.178964 CAGAATGACAGAAGTACACTACTACTC 58.821 40.741 0.00 0.00 39.69 2.59
3709 6776 7.883833 TCAGAATGACAGAAGTACACTACTACT 59.116 37.037 0.00 0.00 42.56 2.57
3710 6777 8.041829 TCAGAATGACAGAAGTACACTACTAC 57.958 38.462 0.00 0.00 42.56 2.73
3711 6778 7.883833 ACTCAGAATGACAGAAGTACACTACTA 59.116 37.037 0.00 0.00 42.56 1.82
3712 6779 6.717540 ACTCAGAATGACAGAAGTACACTACT 59.282 38.462 0.00 0.00 42.56 2.57
3713 6780 6.915349 ACTCAGAATGACAGAAGTACACTAC 58.085 40.000 0.00 0.00 42.56 2.73
3714 6781 7.883833 AGTACTCAGAATGACAGAAGTACACTA 59.116 37.037 11.68 0.00 42.56 2.74
3715 6782 6.717540 AGTACTCAGAATGACAGAAGTACACT 59.282 38.462 11.68 0.00 42.56 3.55
3716 6783 6.804295 CAGTACTCAGAATGACAGAAGTACAC 59.196 42.308 11.68 0.00 42.56 2.90
3717 6784 6.071896 CCAGTACTCAGAATGACAGAAGTACA 60.072 42.308 11.68 0.00 42.56 2.90
3718 6785 6.071840 ACCAGTACTCAGAATGACAGAAGTAC 60.072 42.308 0.00 0.00 42.56 2.73
3719 6786 6.010850 ACCAGTACTCAGAATGACAGAAGTA 58.989 40.000 0.00 0.00 42.56 2.24
3720 6787 4.835615 ACCAGTACTCAGAATGACAGAAGT 59.164 41.667 0.00 0.00 42.56 3.01
3721 6788 5.167121 CACCAGTACTCAGAATGACAGAAG 58.833 45.833 0.00 0.00 42.56 2.85
3743 6810 0.611618 ATCCAGGAATTGTTGCCGCA 60.612 50.000 0.00 0.00 0.00 5.69
3744 6811 0.532115 AATCCAGGAATTGTTGCCGC 59.468 50.000 0.00 0.00 0.00 6.53
3745 6812 2.230992 TGAAATCCAGGAATTGTTGCCG 59.769 45.455 0.00 0.00 0.00 5.69
3746 6813 3.959535 TGAAATCCAGGAATTGTTGCC 57.040 42.857 0.00 0.00 0.00 4.52
3797 6864 1.162698 CCACTGCATCAACCTGACAG 58.837 55.000 0.00 0.00 0.00 3.51
3798 6865 0.473755 ACCACTGCATCAACCTGACA 59.526 50.000 0.00 0.00 0.00 3.58
3824 6914 1.000052 TCTTTGTCATACGCGTCCACA 60.000 47.619 18.63 14.63 0.00 4.17
3833 6923 3.125316 CGGCAAACCTCTCTTTGTCATAC 59.875 47.826 0.00 0.00 35.80 2.39
4153 7243 9.653287 TCACCATGACTAGTTATAACTCTTTTG 57.347 33.333 21.25 13.04 40.37 2.44
4859 7964 8.023021 AGCCATACTATCACTATGTCTTCAAA 57.977 34.615 0.00 0.00 0.00 2.69
4914 8019 6.759827 CCTTCATTCTTTGGGCATCTTATTTG 59.240 38.462 0.00 0.00 0.00 2.32
4936 8041 3.840991 TGGTACTGATATACTCCGCCTT 58.159 45.455 0.00 0.00 0.00 4.35
4955 8060 9.683069 GTATGGCTCATCAGTTTAATTTTATGG 57.317 33.333 0.00 0.00 0.00 2.74
4959 8064 9.643693 CTTTGTATGGCTCATCAGTTTAATTTT 57.356 29.630 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.