Multiple sequence alignment - TraesCS5D01G101200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G101200 chr5D 100.000 3096 0 0 1 3096 114014997 114011902 0.000000e+00 5718.0
1 TraesCS5D01G101200 chr5B 91.169 1189 52 22 1897 3077 124773817 124772674 0.000000e+00 1565.0
2 TraesCS5D01G101200 chr5B 87.430 1432 64 39 592 1947 124775091 124773700 0.000000e+00 1541.0
3 TraesCS5D01G101200 chr5B 92.632 190 10 2 4 192 124775381 124775195 1.410000e-68 270.0
4 TraesCS5D01G101200 chr5B 88.119 101 7 5 262 361 124775200 124775104 7.020000e-22 115.0
5 TraesCS5D01G101200 chr5B 97.959 49 1 0 1967 2015 124773814 124773766 5.500000e-13 86.1
6 TraesCS5D01G101200 chr5A 93.161 658 31 7 1973 2628 119226616 119225971 0.000000e+00 953.0
7 TraesCS5D01G101200 chr5A 89.145 737 32 14 592 1283 119227841 119227108 0.000000e+00 874.0
8 TraesCS5D01G101200 chr5A 88.492 504 35 9 1378 1880 119227057 119226576 3.440000e-164 588.0
9 TraesCS5D01G101200 chr5A 88.039 510 25 12 2571 3077 119225969 119225493 3.460000e-159 571.0
10 TraesCS5D01G101200 chr5A 90.331 362 21 6 4 361 119228206 119227855 2.170000e-126 462.0
11 TraesCS5D01G101200 chr5A 85.612 417 38 7 1464 1880 701226524 701226918 4.780000e-113 418.0
12 TraesCS5D01G101200 chr7D 90.385 156 12 3 1439 1593 566041063 566041216 5.240000e-48 202.0
13 TraesCS5D01G101200 chr7D 88.158 152 17 1 1449 1599 566120093 566119942 2.450000e-41 180.0
14 TraesCS5D01G101200 chr7D 93.548 62 4 0 989 1050 635503185 635503246 3.290000e-15 93.5
15 TraesCS5D01G101200 chr2D 89.474 95 9 1 2808 2901 516329747 516329841 5.420000e-23 119.0
16 TraesCS5D01G101200 chr2D 78.698 169 20 9 2817 2971 481610947 481610781 7.070000e-17 99.0
17 TraesCS5D01G101200 chr6D 80.347 173 17 7 2812 2968 462636774 462636945 7.020000e-22 115.0
18 TraesCS5D01G101200 chr7B 95.161 62 3 0 989 1050 740568988 740568927 7.070000e-17 99.0
19 TraesCS5D01G101200 chr7B 92.308 65 4 1 989 1053 740627279 740627216 1.180000e-14 91.6
20 TraesCS5D01G101200 chr7B 93.220 59 4 0 992 1050 740513982 740513924 1.530000e-13 87.9
21 TraesCS5D01G101200 chr2A 80.537 149 11 7 2808 2941 659894164 659894309 7.070000e-17 99.0
22 TraesCS5D01G101200 chr2A 86.885 61 8 0 2911 2971 659894145 659894085 5.540000e-08 69.4
23 TraesCS5D01G101200 chr3A 77.005 187 25 6 2808 2977 545359740 545359555 1.180000e-14 91.6
24 TraesCS5D01G101200 chr3A 95.833 48 1 1 2822 2868 471582004 471582051 3.310000e-10 76.8
25 TraesCS5D01G101200 chr2B 96.154 52 2 0 2970 3021 607540310 607540361 5.500000e-13 86.1
26 TraesCS5D01G101200 chr4B 84.444 90 9 2 2924 3008 324978985 324978896 1.980000e-12 84.2
27 TraesCS5D01G101200 chr4D 76.970 165 23 4 2822 2971 327379747 327379583 2.560000e-11 80.5
28 TraesCS5D01G101200 chr6B 92.593 54 4 0 2830 2883 120654571 120654624 9.200000e-11 78.7
29 TraesCS5D01G101200 chr1A 88.889 63 7 0 2910 2972 326324035 326324097 9.200000e-11 78.7
30 TraesCS5D01G101200 chrUn 93.750 48 2 1 2822 2868 74678692 74678739 1.540000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G101200 chr5D 114011902 114014997 3095 True 5718.00 5718 100.0000 1 3096 1 chr5D.!!$R1 3095
1 TraesCS5D01G101200 chr5B 124772674 124775381 2707 True 715.42 1565 91.4618 4 3077 5 chr5B.!!$R1 3073
2 TraesCS5D01G101200 chr5A 119225493 119228206 2713 True 689.60 953 89.8336 4 3077 5 chr5A.!!$R1 3073

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 362 0.031178 CTGCAGCAGGTGAACAAACC 59.969 55.0 15.35 0.0 40.85 3.27 F
368 374 0.038310 AACAAACCCAGCTAGGAGCC 59.962 55.0 4.75 0.0 43.77 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 1270 0.112412 GGGCAGAGTGGGGAAGAAAA 59.888 55.0 0.00 0.0 0.00 2.29 R
2364 2460 0.389166 ACTGCTCAAGCTACTGCGAC 60.389 55.0 3.32 0.0 45.42 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.422597 CAACCACAGCCATCTCGTAAA 58.577 47.619 0.00 0.00 0.00 2.01
49 50 3.134574 ACCACAGCCATCTCGTAAAAA 57.865 42.857 0.00 0.00 0.00 1.94
59 60 5.725362 CCATCTCGTAAAAAGGAGAAGACT 58.275 41.667 2.32 0.00 42.16 3.24
120 121 8.783833 TTCTAGAGGATTGACAAATCTTTGAG 57.216 34.615 9.53 0.69 41.74 3.02
129 130 1.026718 AAATCTTTGAGGAGCCGCCG 61.027 55.000 0.00 0.00 43.43 6.46
144 145 1.537562 CCGCCGTAGAAAGGTATCCAC 60.538 57.143 0.00 0.00 0.00 4.02
145 146 1.135527 CGCCGTAGAAAGGTATCCACA 59.864 52.381 0.00 0.00 0.00 4.17
146 147 2.547826 GCCGTAGAAAGGTATCCACAC 58.452 52.381 0.00 0.00 0.00 3.82
220 221 2.515523 CGCATTGCCTCTCCTGGG 60.516 66.667 2.41 0.00 0.00 4.45
241 246 3.330720 CCCGGACCCTTCCAGCTT 61.331 66.667 0.73 0.00 43.00 3.74
253 258 4.063529 CAGCTTGCTGGAAACGGA 57.936 55.556 14.25 0.00 39.98 4.69
277 282 1.203137 TCTTCTCCGTTTCCTCCAGGA 60.203 52.381 0.00 0.00 43.73 3.86
355 361 0.595825 GCTGCAGCAGGTGAACAAAC 60.596 55.000 33.36 0.00 41.59 2.93
356 362 0.031178 CTGCAGCAGGTGAACAAACC 59.969 55.000 15.35 0.00 40.85 3.27
357 363 1.363807 GCAGCAGGTGAACAAACCC 59.636 57.895 3.02 0.00 41.54 4.11
358 364 1.391157 GCAGCAGGTGAACAAACCCA 61.391 55.000 3.02 0.00 41.54 4.51
359 365 0.670162 CAGCAGGTGAACAAACCCAG 59.330 55.000 0.00 0.00 41.54 4.45
360 366 1.109323 AGCAGGTGAACAAACCCAGC 61.109 55.000 0.00 0.00 41.54 4.85
361 367 1.109323 GCAGGTGAACAAACCCAGCT 61.109 55.000 0.00 0.00 41.54 4.24
362 368 1.817740 GCAGGTGAACAAACCCAGCTA 60.818 52.381 0.00 0.00 41.54 3.32
363 369 2.154462 CAGGTGAACAAACCCAGCTAG 58.846 52.381 0.00 0.00 41.54 3.42
364 370 1.073923 AGGTGAACAAACCCAGCTAGG 59.926 52.381 0.00 0.00 41.54 3.02
365 371 1.073284 GGTGAACAAACCCAGCTAGGA 59.927 52.381 4.75 0.00 41.22 2.94
366 372 2.427506 GTGAACAAACCCAGCTAGGAG 58.572 52.381 4.75 0.00 41.22 3.69
367 373 1.271379 TGAACAAACCCAGCTAGGAGC 60.271 52.381 4.75 0.00 42.84 4.70
368 374 0.038310 AACAAACCCAGCTAGGAGCC 59.962 55.000 4.75 0.00 43.77 4.70
369 375 1.450312 CAAACCCAGCTAGGAGCCG 60.450 63.158 4.75 0.00 43.77 5.52
370 376 1.918800 AAACCCAGCTAGGAGCCGT 60.919 57.895 4.75 0.00 43.77 5.68
371 377 2.185310 AAACCCAGCTAGGAGCCGTG 62.185 60.000 4.75 0.00 43.77 4.94
372 378 4.537433 CCCAGCTAGGAGCCGTGC 62.537 72.222 0.00 0.00 43.77 5.34
373 379 3.774528 CCAGCTAGGAGCCGTGCA 61.775 66.667 8.86 0.00 43.77 4.57
374 380 2.503061 CAGCTAGGAGCCGTGCAT 59.497 61.111 0.00 0.00 43.77 3.96
375 381 1.153289 CAGCTAGGAGCCGTGCATT 60.153 57.895 0.00 0.00 43.77 3.56
376 382 0.104855 CAGCTAGGAGCCGTGCATTA 59.895 55.000 0.00 0.00 43.77 1.90
377 383 0.830648 AGCTAGGAGCCGTGCATTAA 59.169 50.000 0.00 0.00 43.77 1.40
382 388 1.102978 GGAGCCGTGCATTAAACCAT 58.897 50.000 0.00 0.00 0.00 3.55
396 402 6.402442 GCATTAAACCATCAAAATTCAGCCAC 60.402 38.462 0.00 0.00 0.00 5.01
397 403 3.302365 AACCATCAAAATTCAGCCACG 57.698 42.857 0.00 0.00 0.00 4.94
398 404 1.067635 ACCATCAAAATTCAGCCACGC 60.068 47.619 0.00 0.00 0.00 5.34
399 405 1.067706 CCATCAAAATTCAGCCACGCA 60.068 47.619 0.00 0.00 0.00 5.24
400 406 2.417651 CCATCAAAATTCAGCCACGCAT 60.418 45.455 0.00 0.00 0.00 4.73
401 407 3.181488 CCATCAAAATTCAGCCACGCATA 60.181 43.478 0.00 0.00 0.00 3.14
402 408 3.485947 TCAAAATTCAGCCACGCATAC 57.514 42.857 0.00 0.00 0.00 2.39
403 409 2.816672 TCAAAATTCAGCCACGCATACA 59.183 40.909 0.00 0.00 0.00 2.29
404 410 3.254411 TCAAAATTCAGCCACGCATACAA 59.746 39.130 0.00 0.00 0.00 2.41
405 411 3.932545 AAATTCAGCCACGCATACAAA 57.067 38.095 0.00 0.00 0.00 2.83
406 412 3.492421 AATTCAGCCACGCATACAAAG 57.508 42.857 0.00 0.00 0.00 2.77
407 413 1.890876 TTCAGCCACGCATACAAAGT 58.109 45.000 0.00 0.00 0.00 2.66
408 414 2.753055 TCAGCCACGCATACAAAGTA 57.247 45.000 0.00 0.00 0.00 2.24
409 415 2.616960 TCAGCCACGCATACAAAGTAG 58.383 47.619 0.00 0.00 0.00 2.57
410 416 2.028476 TCAGCCACGCATACAAAGTAGT 60.028 45.455 0.00 0.00 0.00 2.73
411 417 2.094258 CAGCCACGCATACAAAGTAGTG 59.906 50.000 0.00 0.00 0.00 2.74
412 418 2.073816 GCCACGCATACAAAGTAGTGT 58.926 47.619 0.00 0.00 35.43 3.55
413 419 2.159707 GCCACGCATACAAAGTAGTGTG 60.160 50.000 0.00 0.00 40.96 3.82
414 420 3.722555 CACGCATACAAAGTAGTGTGG 57.277 47.619 0.00 0.00 38.46 4.17
415 421 3.064207 CACGCATACAAAGTAGTGTGGT 58.936 45.455 0.00 0.00 38.46 4.16
416 422 3.496884 CACGCATACAAAGTAGTGTGGTT 59.503 43.478 0.00 0.00 38.46 3.67
417 423 4.024387 CACGCATACAAAGTAGTGTGGTTT 60.024 41.667 0.00 0.00 38.46 3.27
418 424 4.024387 ACGCATACAAAGTAGTGTGGTTTG 60.024 41.667 0.00 0.00 37.23 2.93
419 425 4.024387 CGCATACAAAGTAGTGTGGTTTGT 60.024 41.667 5.16 5.16 44.51 2.83
420 426 5.504994 CGCATACAAAGTAGTGTGGTTTGTT 60.505 40.000 5.11 0.00 40.64 2.83
421 427 5.685511 GCATACAAAGTAGTGTGGTTTGTTG 59.314 40.000 5.11 5.43 40.64 3.33
422 428 4.712122 ACAAAGTAGTGTGGTTTGTTGG 57.288 40.909 0.00 0.00 40.64 3.77
423 429 4.337145 ACAAAGTAGTGTGGTTTGTTGGA 58.663 39.130 0.00 0.00 40.64 3.53
424 430 4.767928 ACAAAGTAGTGTGGTTTGTTGGAA 59.232 37.500 0.00 0.00 40.64 3.53
425 431 5.244178 ACAAAGTAGTGTGGTTTGTTGGAAA 59.756 36.000 0.00 0.00 40.64 3.13
426 432 5.576447 AAGTAGTGTGGTTTGTTGGAAAG 57.424 39.130 0.00 0.00 0.00 2.62
427 433 4.595986 AGTAGTGTGGTTTGTTGGAAAGT 58.404 39.130 0.00 0.00 0.00 2.66
428 434 5.747342 AGTAGTGTGGTTTGTTGGAAAGTA 58.253 37.500 0.00 0.00 0.00 2.24
429 435 5.820947 AGTAGTGTGGTTTGTTGGAAAGTAG 59.179 40.000 0.00 0.00 0.00 2.57
430 436 4.595986 AGTGTGGTTTGTTGGAAAGTAGT 58.404 39.130 0.00 0.00 0.00 2.73
431 437 4.398044 AGTGTGGTTTGTTGGAAAGTAGTG 59.602 41.667 0.00 0.00 0.00 2.74
432 438 4.157105 GTGTGGTTTGTTGGAAAGTAGTGT 59.843 41.667 0.00 0.00 0.00 3.55
433 439 4.156922 TGTGGTTTGTTGGAAAGTAGTGTG 59.843 41.667 0.00 0.00 0.00 3.82
434 440 4.396790 GTGGTTTGTTGGAAAGTAGTGTGA 59.603 41.667 0.00 0.00 0.00 3.58
435 441 5.067283 GTGGTTTGTTGGAAAGTAGTGTGAT 59.933 40.000 0.00 0.00 0.00 3.06
436 442 5.298276 TGGTTTGTTGGAAAGTAGTGTGATC 59.702 40.000 0.00 0.00 0.00 2.92
437 443 5.531287 GGTTTGTTGGAAAGTAGTGTGATCT 59.469 40.000 0.00 0.00 0.00 2.75
438 444 6.039382 GGTTTGTTGGAAAGTAGTGTGATCTT 59.961 38.462 0.00 0.00 0.00 2.40
439 445 6.618287 TTGTTGGAAAGTAGTGTGATCTTG 57.382 37.500 0.00 0.00 0.00 3.02
440 446 5.063204 TGTTGGAAAGTAGTGTGATCTTGG 58.937 41.667 0.00 0.00 0.00 3.61
441 447 4.974645 TGGAAAGTAGTGTGATCTTGGT 57.025 40.909 0.00 0.00 0.00 3.67
442 448 6.183361 TGTTGGAAAGTAGTGTGATCTTGGTA 60.183 38.462 0.00 0.00 0.00 3.25
443 449 6.037786 TGGAAAGTAGTGTGATCTTGGTAG 57.962 41.667 0.00 0.00 0.00 3.18
444 450 4.870991 GGAAAGTAGTGTGATCTTGGTAGC 59.129 45.833 0.00 0.00 0.00 3.58
445 451 5.479306 GAAAGTAGTGTGATCTTGGTAGCA 58.521 41.667 0.00 0.00 0.00 3.49
446 452 5.483685 AAGTAGTGTGATCTTGGTAGCAA 57.516 39.130 7.22 7.22 0.00 3.91
447 453 5.078411 AGTAGTGTGATCTTGGTAGCAAG 57.922 43.478 25.37 25.37 0.00 4.01
448 454 2.704572 AGTGTGATCTTGGTAGCAAGC 58.295 47.619 26.25 15.56 32.52 4.01
449 455 1.394917 GTGTGATCTTGGTAGCAAGCG 59.605 52.381 26.25 8.51 32.52 4.68
450 456 1.275010 TGTGATCTTGGTAGCAAGCGA 59.725 47.619 26.25 13.44 32.52 4.93
451 457 1.661112 GTGATCTTGGTAGCAAGCGAC 59.339 52.381 26.25 18.22 32.52 5.19
452 458 1.291132 GATCTTGGTAGCAAGCGACC 58.709 55.000 26.25 16.15 41.24 4.79
455 461 2.047274 TGGTAGCAAGCGACCAGC 60.047 61.111 20.77 2.75 44.64 4.85
465 471 4.147449 CGACCAGCCAGGATCGCA 62.147 66.667 0.00 0.00 41.22 5.10
466 472 2.268920 GACCAGCCAGGATCGCAA 59.731 61.111 0.00 0.00 41.22 4.85
467 473 1.817099 GACCAGCCAGGATCGCAAG 60.817 63.158 0.00 0.00 41.22 4.01
468 474 2.515523 CCAGCCAGGATCGCAAGG 60.516 66.667 0.00 0.00 41.22 3.61
471 477 2.517875 GCCAGGATCGCAAGGCAT 60.518 61.111 10.35 0.00 46.26 4.40
472 478 1.227943 GCCAGGATCGCAAGGCATA 60.228 57.895 10.35 0.00 46.26 3.14
473 479 1.510480 GCCAGGATCGCAAGGCATAC 61.510 60.000 10.35 0.00 46.26 2.39
474 480 0.107456 CCAGGATCGCAAGGCATACT 59.893 55.000 0.00 0.00 38.47 2.12
475 481 1.344438 CCAGGATCGCAAGGCATACTA 59.656 52.381 0.00 0.00 38.47 1.82
476 482 2.408050 CAGGATCGCAAGGCATACTAC 58.592 52.381 0.00 0.00 38.47 2.73
477 483 2.039418 AGGATCGCAAGGCATACTACA 58.961 47.619 0.00 0.00 38.47 2.74
478 484 2.634940 AGGATCGCAAGGCATACTACAT 59.365 45.455 0.00 0.00 38.47 2.29
479 485 3.832490 AGGATCGCAAGGCATACTACATA 59.168 43.478 0.00 0.00 38.47 2.29
480 486 3.927142 GGATCGCAAGGCATACTACATAC 59.073 47.826 0.00 0.00 38.47 2.39
481 487 4.556233 GATCGCAAGGCATACTACATACA 58.444 43.478 0.00 0.00 38.47 2.29
482 488 4.600692 TCGCAAGGCATACTACATACAT 57.399 40.909 0.00 0.00 38.47 2.29
483 489 4.306600 TCGCAAGGCATACTACATACATG 58.693 43.478 0.00 0.00 38.47 3.21
484 490 4.058124 CGCAAGGCATACTACATACATGT 58.942 43.478 2.69 2.69 44.48 3.21
485 491 4.150627 CGCAAGGCATACTACATACATGTC 59.849 45.833 0.00 0.00 41.97 3.06
486 492 4.452455 GCAAGGCATACTACATACATGTCC 59.548 45.833 0.00 0.00 41.97 4.02
487 493 5.743130 GCAAGGCATACTACATACATGTCCT 60.743 44.000 0.00 0.00 41.97 3.85
488 494 6.518369 GCAAGGCATACTACATACATGTCCTA 60.518 42.308 0.00 0.00 41.97 2.94
489 495 7.441836 CAAGGCATACTACATACATGTCCTAA 58.558 38.462 0.00 0.00 41.97 2.69
490 496 7.798710 AGGCATACTACATACATGTCCTAAT 57.201 36.000 0.00 0.00 41.97 1.73
491 497 7.841956 AGGCATACTACATACATGTCCTAATC 58.158 38.462 0.00 0.00 41.97 1.75
492 498 7.676043 AGGCATACTACATACATGTCCTAATCT 59.324 37.037 0.00 0.00 41.97 2.40
493 499 7.761704 GGCATACTACATACATGTCCTAATCTG 59.238 40.741 0.00 0.00 41.97 2.90
494 500 8.523658 GCATACTACATACATGTCCTAATCTGA 58.476 37.037 0.00 0.00 41.97 3.27
500 506 8.682936 ACATACATGTCCTAATCTGAAAATCC 57.317 34.615 0.00 0.00 35.87 3.01
501 507 7.442364 ACATACATGTCCTAATCTGAAAATCCG 59.558 37.037 0.00 0.00 35.87 4.18
502 508 5.989477 ACATGTCCTAATCTGAAAATCCGA 58.011 37.500 0.00 0.00 0.00 4.55
503 509 5.817816 ACATGTCCTAATCTGAAAATCCGAC 59.182 40.000 0.00 0.00 0.00 4.79
504 510 4.766375 TGTCCTAATCTGAAAATCCGACC 58.234 43.478 0.00 0.00 0.00 4.79
505 511 4.224147 TGTCCTAATCTGAAAATCCGACCA 59.776 41.667 0.00 0.00 0.00 4.02
506 512 4.571176 GTCCTAATCTGAAAATCCGACCAC 59.429 45.833 0.00 0.00 0.00 4.16
507 513 4.224147 TCCTAATCTGAAAATCCGACCACA 59.776 41.667 0.00 0.00 0.00 4.17
508 514 4.941263 CCTAATCTGAAAATCCGACCACAA 59.059 41.667 0.00 0.00 0.00 3.33
509 515 5.065218 CCTAATCTGAAAATCCGACCACAAG 59.935 44.000 0.00 0.00 0.00 3.16
510 516 3.762407 TCTGAAAATCCGACCACAAGA 57.238 42.857 0.00 0.00 0.00 3.02
511 517 4.079980 TCTGAAAATCCGACCACAAGAA 57.920 40.909 0.00 0.00 0.00 2.52
512 518 4.651778 TCTGAAAATCCGACCACAAGAAT 58.348 39.130 0.00 0.00 0.00 2.40
513 519 5.800296 TCTGAAAATCCGACCACAAGAATA 58.200 37.500 0.00 0.00 0.00 1.75
514 520 5.874810 TCTGAAAATCCGACCACAAGAATAG 59.125 40.000 0.00 0.00 0.00 1.73
515 521 4.394920 TGAAAATCCGACCACAAGAATAGC 59.605 41.667 0.00 0.00 0.00 2.97
516 522 3.627395 AATCCGACCACAAGAATAGCA 57.373 42.857 0.00 0.00 0.00 3.49
517 523 3.845781 ATCCGACCACAAGAATAGCAT 57.154 42.857 0.00 0.00 0.00 3.79
518 524 3.179443 TCCGACCACAAGAATAGCATC 57.821 47.619 0.00 0.00 0.00 3.91
519 525 2.499693 TCCGACCACAAGAATAGCATCA 59.500 45.455 0.00 0.00 0.00 3.07
520 526 3.055458 TCCGACCACAAGAATAGCATCAA 60.055 43.478 0.00 0.00 0.00 2.57
521 527 3.310774 CCGACCACAAGAATAGCATCAAG 59.689 47.826 0.00 0.00 0.00 3.02
522 528 4.183865 CGACCACAAGAATAGCATCAAGA 58.816 43.478 0.00 0.00 0.00 3.02
523 529 4.631377 CGACCACAAGAATAGCATCAAGAA 59.369 41.667 0.00 0.00 0.00 2.52
524 530 5.220548 CGACCACAAGAATAGCATCAAGAAG 60.221 44.000 0.00 0.00 0.00 2.85
525 531 5.809001 ACCACAAGAATAGCATCAAGAAGA 58.191 37.500 0.00 0.00 0.00 2.87
526 532 6.421485 ACCACAAGAATAGCATCAAGAAGAT 58.579 36.000 0.00 0.00 37.48 2.40
527 533 6.541641 ACCACAAGAATAGCATCAAGAAGATC 59.458 38.462 0.00 0.00 33.72 2.75
528 534 6.766944 CCACAAGAATAGCATCAAGAAGATCT 59.233 38.462 0.00 0.00 33.72 2.75
529 535 7.041916 CCACAAGAATAGCATCAAGAAGATCTC 60.042 40.741 0.00 0.00 33.72 2.75
530 536 6.700960 ACAAGAATAGCATCAAGAAGATCTCG 59.299 38.462 0.00 0.00 33.72 4.04
531 537 5.229423 AGAATAGCATCAAGAAGATCTCGC 58.771 41.667 0.00 0.00 33.72 5.03
532 538 2.975732 AGCATCAAGAAGATCTCGCA 57.024 45.000 0.00 0.00 33.72 5.10
533 539 2.823984 AGCATCAAGAAGATCTCGCAG 58.176 47.619 0.00 0.00 33.72 5.18
534 540 1.261089 GCATCAAGAAGATCTCGCAGC 59.739 52.381 0.00 0.00 33.72 5.25
535 541 2.547826 CATCAAGAAGATCTCGCAGCA 58.452 47.619 0.00 0.00 33.72 4.41
536 542 2.001812 TCAAGAAGATCTCGCAGCAC 57.998 50.000 0.00 0.00 0.00 4.40
537 543 1.005340 CAAGAAGATCTCGCAGCACC 58.995 55.000 0.00 0.00 0.00 5.01
538 544 0.459237 AAGAAGATCTCGCAGCACCG 60.459 55.000 0.00 0.00 0.00 4.94
539 545 2.510238 AAGATCTCGCAGCACCGC 60.510 61.111 0.00 0.00 0.00 5.68
540 546 3.300934 AAGATCTCGCAGCACCGCA 62.301 57.895 0.00 0.00 0.00 5.69
541 547 2.584261 AAGATCTCGCAGCACCGCAT 62.584 55.000 0.00 0.00 0.00 4.73
542 548 2.124983 ATCTCGCAGCACCGCATT 60.125 55.556 0.00 0.00 0.00 3.56
543 549 0.875908 GATCTCGCAGCACCGCATTA 60.876 55.000 0.00 0.00 0.00 1.90
544 550 0.250038 ATCTCGCAGCACCGCATTAT 60.250 50.000 0.00 0.00 0.00 1.28
545 551 0.461870 TCTCGCAGCACCGCATTATT 60.462 50.000 0.00 0.00 0.00 1.40
546 552 0.041839 CTCGCAGCACCGCATTATTC 60.042 55.000 0.00 0.00 0.00 1.75
547 553 0.742635 TCGCAGCACCGCATTATTCA 60.743 50.000 0.00 0.00 0.00 2.57
548 554 0.589729 CGCAGCACCGCATTATTCAC 60.590 55.000 0.00 0.00 0.00 3.18
549 555 0.451383 GCAGCACCGCATTATTCACA 59.549 50.000 0.00 0.00 0.00 3.58
550 556 1.066002 GCAGCACCGCATTATTCACAT 59.934 47.619 0.00 0.00 0.00 3.21
551 557 2.855953 GCAGCACCGCATTATTCACATC 60.856 50.000 0.00 0.00 0.00 3.06
552 558 2.355444 CAGCACCGCATTATTCACATCA 59.645 45.455 0.00 0.00 0.00 3.07
553 559 3.016031 AGCACCGCATTATTCACATCAA 58.984 40.909 0.00 0.00 0.00 2.57
554 560 3.443329 AGCACCGCATTATTCACATCAAA 59.557 39.130 0.00 0.00 0.00 2.69
555 561 4.082300 AGCACCGCATTATTCACATCAAAA 60.082 37.500 0.00 0.00 0.00 2.44
556 562 4.805192 GCACCGCATTATTCACATCAAAAT 59.195 37.500 0.00 0.00 0.00 1.82
557 563 5.976534 GCACCGCATTATTCACATCAAAATA 59.023 36.000 0.00 0.00 0.00 1.40
558 564 6.475076 GCACCGCATTATTCACATCAAAATAA 59.525 34.615 0.00 0.00 33.26 1.40
559 565 7.169645 GCACCGCATTATTCACATCAAAATAAT 59.830 33.333 0.00 0.00 38.14 1.28
566 572 8.839947 TTATTCACATCAAAATAATGCACTCG 57.160 30.769 0.00 0.00 0.00 4.18
567 573 6.493449 TTCACATCAAAATAATGCACTCGA 57.507 33.333 0.00 0.00 0.00 4.04
568 574 6.493449 TCACATCAAAATAATGCACTCGAA 57.507 33.333 0.00 0.00 0.00 3.71
569 575 7.087409 TCACATCAAAATAATGCACTCGAAT 57.913 32.000 0.00 0.00 0.00 3.34
570 576 8.207521 TCACATCAAAATAATGCACTCGAATA 57.792 30.769 0.00 0.00 0.00 1.75
571 577 8.672815 TCACATCAAAATAATGCACTCGAATAA 58.327 29.630 0.00 0.00 0.00 1.40
572 578 8.950961 CACATCAAAATAATGCACTCGAATAAG 58.049 33.333 0.00 0.00 0.00 1.73
573 579 7.645340 ACATCAAAATAATGCACTCGAATAAGC 59.355 33.333 0.00 0.00 0.00 3.09
574 580 7.082700 TCAAAATAATGCACTCGAATAAGCA 57.917 32.000 0.00 3.70 41.73 3.91
575 581 6.966632 TCAAAATAATGCACTCGAATAAGCAC 59.033 34.615 0.00 0.00 40.14 4.40
576 582 6.435430 AAATAATGCACTCGAATAAGCACA 57.565 33.333 0.00 0.00 40.14 4.57
577 583 6.435430 AATAATGCACTCGAATAAGCACAA 57.565 33.333 0.00 0.00 40.14 3.33
578 584 4.764679 AATGCACTCGAATAAGCACAAA 57.235 36.364 0.00 0.00 40.14 2.83
579 585 3.811722 TGCACTCGAATAAGCACAAAG 57.188 42.857 0.00 0.00 31.05 2.77
580 586 3.138304 TGCACTCGAATAAGCACAAAGT 58.862 40.909 0.00 0.00 31.05 2.66
581 587 3.563808 TGCACTCGAATAAGCACAAAGTT 59.436 39.130 0.00 0.00 31.05 2.66
582 588 4.036262 TGCACTCGAATAAGCACAAAGTTT 59.964 37.500 0.00 0.00 31.05 2.66
583 589 4.613031 GCACTCGAATAAGCACAAAGTTTC 59.387 41.667 0.00 0.00 0.00 2.78
584 590 5.147162 CACTCGAATAAGCACAAAGTTTCC 58.853 41.667 0.00 0.00 0.00 3.13
585 591 4.819630 ACTCGAATAAGCACAAAGTTTCCA 59.180 37.500 0.00 0.00 0.00 3.53
586 592 5.298276 ACTCGAATAAGCACAAAGTTTCCAA 59.702 36.000 0.00 0.00 0.00 3.53
587 593 6.137794 TCGAATAAGCACAAAGTTTCCAAA 57.862 33.333 0.00 0.00 0.00 3.28
588 594 6.565234 TCGAATAAGCACAAAGTTTCCAAAA 58.435 32.000 0.00 0.00 0.00 2.44
589 595 7.036220 TCGAATAAGCACAAAGTTTCCAAAAA 58.964 30.769 0.00 0.00 0.00 1.94
590 596 7.009723 TCGAATAAGCACAAAGTTTCCAAAAAC 59.990 33.333 0.00 0.00 44.24 2.43
667 679 1.269621 GCCTCTCTACGTGTTGTGTGT 60.270 52.381 0.00 0.00 0.00 3.72
841 878 1.525923 CCTCCGAGAGACCGACCTA 59.474 63.158 0.00 0.00 0.00 3.08
880 920 3.835134 CCTGCAAAGGGTAGGGGA 58.165 61.111 0.00 0.00 44.95 4.81
881 921 2.321720 CCTGCAAAGGGTAGGGGAT 58.678 57.895 0.00 0.00 44.95 3.85
894 937 3.181405 GGTAGGGGATAGACAGGGATTCT 60.181 52.174 0.00 0.00 0.00 2.40
895 938 4.045590 GGTAGGGGATAGACAGGGATTCTA 59.954 50.000 0.00 0.00 0.00 2.10
896 939 4.852991 AGGGGATAGACAGGGATTCTAA 57.147 45.455 0.00 0.00 0.00 2.10
910 953 0.902984 TTCTAAGGCTCCGCTCCACA 60.903 55.000 0.00 0.00 0.00 4.17
922 965 0.737715 GCTCCACACCAAGAGTAGCG 60.738 60.000 0.00 0.00 32.47 4.26
986 1036 1.633774 GAGGAGGTCTCAGTCACCAA 58.366 55.000 0.14 0.00 42.02 3.67
1057 1107 0.238553 GGCTGCTTTCCTCGTTGTTC 59.761 55.000 0.00 0.00 0.00 3.18
1225 1302 2.278332 ACTTTTCTTCCCCACTCTGC 57.722 50.000 0.00 0.00 0.00 4.26
1265 1350 1.033574 CTCATACCACCTCGTCCCTC 58.966 60.000 0.00 0.00 0.00 4.30
1275 1360 2.299297 ACCTCGTCCCTCAAAGTTACTG 59.701 50.000 0.00 0.00 0.00 2.74
1310 1395 3.840666 TGAGAGGATCAGCAAAACTAGGT 59.159 43.478 0.00 0.00 37.82 3.08
1314 1399 6.410540 AGAGGATCAGCAAAACTAGGTAAAG 58.589 40.000 0.00 0.00 37.82 1.85
1323 1410 7.203218 AGCAAAACTAGGTAAAGCTGAAAAAG 58.797 34.615 1.21 0.00 0.00 2.27
1328 1415 7.304497 ACTAGGTAAAGCTGAAAAAGAGAGA 57.696 36.000 0.00 0.00 0.00 3.10
1330 1417 6.869315 AGGTAAAGCTGAAAAAGAGAGAAC 57.131 37.500 0.00 0.00 0.00 3.01
1341 1428 7.891561 TGAAAAAGAGAGAACAAACCTTTGAA 58.108 30.769 4.77 0.00 40.55 2.69
1409 1497 5.824904 AGACTGAATTAATGTGGCATGTC 57.175 39.130 0.00 0.00 0.00 3.06
1410 1498 5.255687 AGACTGAATTAATGTGGCATGTCA 58.744 37.500 0.00 0.00 0.00 3.58
1411 1499 5.711506 AGACTGAATTAATGTGGCATGTCAA 59.288 36.000 0.00 0.00 0.00 3.18
1412 1500 6.209192 AGACTGAATTAATGTGGCATGTCAAA 59.791 34.615 0.00 0.00 0.00 2.69
1413 1501 6.757237 ACTGAATTAATGTGGCATGTCAAAA 58.243 32.000 0.00 0.00 0.00 2.44
1414 1502 7.215789 ACTGAATTAATGTGGCATGTCAAAAA 58.784 30.769 0.00 0.00 0.00 1.94
1451 1539 5.895534 ACGGTCTGTTGGTAGATTATAAGGA 59.104 40.000 0.00 0.00 0.00 3.36
1497 1586 1.876322 AGAACTGAGCTTGAGCACAC 58.124 50.000 5.70 0.00 45.16 3.82
1501 1590 1.270199 ACTGAGCTTGAGCACACTGAG 60.270 52.381 5.70 0.00 45.16 3.35
1516 1605 3.201290 CACTGAGCTGAAAGACAAGTGT 58.799 45.455 0.00 0.00 34.07 3.55
1521 1610 1.672881 GCTGAAAGACAAGTGTGCAGT 59.327 47.619 0.00 0.00 34.07 4.40
1522 1611 2.540361 GCTGAAAGACAAGTGTGCAGTG 60.540 50.000 0.00 0.00 34.07 3.66
1648 1740 1.525619 GACAACAACTGTGTCTACCGC 59.474 52.381 0.00 0.00 38.84 5.68
1843 1939 6.213600 TCAGAGGTTTAGCTACAATCTTCCTT 59.786 38.462 0.00 0.00 0.00 3.36
1847 1943 6.817140 AGGTTTAGCTACAATCTTCCTTAACG 59.183 38.462 0.00 0.00 0.00 3.18
1880 1976 6.370442 CACCTTGATTCGGTTGTGTTCTATAA 59.630 38.462 0.00 0.00 30.82 0.98
1916 2012 5.947228 TTGCTACAATCTTCCTGAACAAG 57.053 39.130 0.00 0.00 0.00 3.16
1917 2013 5.227569 TGCTACAATCTTCCTGAACAAGA 57.772 39.130 0.00 0.00 34.37 3.02
1918 2014 5.620206 TGCTACAATCTTCCTGAACAAGAA 58.380 37.500 0.00 0.00 33.57 2.52
1919 2015 5.470098 TGCTACAATCTTCCTGAACAAGAAC 59.530 40.000 0.00 0.00 33.57 3.01
1920 2016 5.106515 GCTACAATCTTCCTGAACAAGAACC 60.107 44.000 0.00 0.00 33.57 3.62
1921 2017 5.053978 ACAATCTTCCTGAACAAGAACCT 57.946 39.130 0.00 0.00 33.57 3.50
1922 2018 5.066593 ACAATCTTCCTGAACAAGAACCTC 58.933 41.667 0.00 0.00 33.57 3.85
1923 2019 4.982241 ATCTTCCTGAACAAGAACCTCA 57.018 40.909 0.00 0.00 33.57 3.86
1924 2020 4.073293 TCTTCCTGAACAAGAACCTCAC 57.927 45.455 0.00 0.00 0.00 3.51
1925 2021 3.454447 TCTTCCTGAACAAGAACCTCACA 59.546 43.478 0.00 0.00 0.00 3.58
1926 2022 4.103153 TCTTCCTGAACAAGAACCTCACAT 59.897 41.667 0.00 0.00 0.00 3.21
1927 2023 4.437682 TCCTGAACAAGAACCTCACATT 57.562 40.909 0.00 0.00 0.00 2.71
1928 2024 4.136796 TCCTGAACAAGAACCTCACATTG 58.863 43.478 0.00 0.00 0.00 2.82
1929 2025 4.136796 CCTGAACAAGAACCTCACATTGA 58.863 43.478 0.00 0.00 0.00 2.57
1930 2026 4.763793 CCTGAACAAGAACCTCACATTGAT 59.236 41.667 0.00 0.00 0.00 2.57
1931 2027 5.242393 CCTGAACAAGAACCTCACATTGATT 59.758 40.000 0.00 0.00 0.00 2.57
1932 2028 6.317789 TGAACAAGAACCTCACATTGATTC 57.682 37.500 0.00 0.00 0.00 2.52
1933 2029 5.049474 TGAACAAGAACCTCACATTGATTCG 60.049 40.000 0.00 0.00 0.00 3.34
1934 2030 3.753272 ACAAGAACCTCACATTGATTCGG 59.247 43.478 0.00 0.00 0.00 4.30
1935 2031 3.703001 AGAACCTCACATTGATTCGGT 57.297 42.857 0.00 0.00 0.00 4.69
1936 2032 4.021102 AGAACCTCACATTGATTCGGTT 57.979 40.909 0.00 0.00 35.82 4.44
1937 2033 3.753272 AGAACCTCACATTGATTCGGTTG 59.247 43.478 3.71 0.00 34.04 3.77
1938 2034 3.140325 ACCTCACATTGATTCGGTTGT 57.860 42.857 0.00 0.00 0.00 3.32
1939 2035 2.813754 ACCTCACATTGATTCGGTTGTG 59.186 45.455 6.96 6.96 40.58 3.33
1940 2036 2.813754 CCTCACATTGATTCGGTTGTGT 59.186 45.455 11.05 0.00 40.22 3.72
1941 2037 3.253188 CCTCACATTGATTCGGTTGTGTT 59.747 43.478 11.05 0.00 40.22 3.32
1942 2038 4.466828 CTCACATTGATTCGGTTGTGTTC 58.533 43.478 11.05 0.00 40.22 3.18
1943 2039 4.133820 TCACATTGATTCGGTTGTGTTCT 58.866 39.130 11.05 0.00 40.22 3.01
1944 2040 5.301555 TCACATTGATTCGGTTGTGTTCTA 58.698 37.500 11.05 0.00 40.22 2.10
1945 2041 5.937540 TCACATTGATTCGGTTGTGTTCTAT 59.062 36.000 11.05 0.00 40.22 1.98
1946 2042 7.100409 TCACATTGATTCGGTTGTGTTCTATA 58.900 34.615 11.05 0.00 40.22 1.31
1947 2043 7.604545 TCACATTGATTCGGTTGTGTTCTATAA 59.395 33.333 11.05 0.00 40.22 0.98
1948 2044 8.233868 CACATTGATTCGGTTGTGTTCTATAAA 58.766 33.333 0.00 0.00 35.79 1.40
1949 2045 8.234546 ACATTGATTCGGTTGTGTTCTATAAAC 58.765 33.333 0.00 0.00 0.00 2.01
1950 2046 7.731882 TTGATTCGGTTGTGTTCTATAAACA 57.268 32.000 0.00 0.00 0.00 2.83
1951 2047 7.731882 TGATTCGGTTGTGTTCTATAAACAA 57.268 32.000 0.00 0.00 31.20 2.83
1952 2048 8.330466 TGATTCGGTTGTGTTCTATAAACAAT 57.670 30.769 0.00 0.00 36.31 2.71
1953 2049 8.788806 TGATTCGGTTGTGTTCTATAAACAATT 58.211 29.630 0.00 0.00 36.31 2.32
1954 2050 8.964420 ATTCGGTTGTGTTCTATAAACAATTG 57.036 30.769 3.24 3.24 36.31 2.32
1955 2051 7.731882 TCGGTTGTGTTCTATAAACAATTGA 57.268 32.000 13.59 0.00 36.31 2.57
1956 2052 7.577979 TCGGTTGTGTTCTATAAACAATTGAC 58.422 34.615 13.59 0.00 36.31 3.18
1957 2053 7.226918 TCGGTTGTGTTCTATAAACAATTGACA 59.773 33.333 13.59 0.00 36.31 3.58
1958 2054 8.020819 CGGTTGTGTTCTATAAACAATTGACAT 58.979 33.333 13.59 4.59 36.31 3.06
1959 2055 9.691362 GGTTGTGTTCTATAAACAATTGACATT 57.309 29.630 13.59 6.77 36.31 2.71
2320 2416 6.643770 CCATTGCATTAATCAAAGGATGCTAC 59.356 38.462 12.62 0.00 43.89 3.58
2354 2450 2.362077 CTCTTGGTGGTTTGTTCCCTTG 59.638 50.000 0.00 0.00 0.00 3.61
2364 2460 1.679139 TGTTCCCTTGTGCACTTCTG 58.321 50.000 19.41 4.57 0.00 3.02
2365 2461 1.064758 TGTTCCCTTGTGCACTTCTGT 60.065 47.619 19.41 0.00 0.00 3.41
2366 2462 1.604278 GTTCCCTTGTGCACTTCTGTC 59.396 52.381 19.41 0.00 0.00 3.51
2395 2491 6.251655 AGCTTGAGCAGTAAATTTCAAGAG 57.748 37.500 16.04 0.00 45.82 2.85
2453 2550 7.197486 GAACGAACATGTTCTGAATATTTGC 57.803 36.000 30.45 6.27 43.82 3.68
2454 2551 6.252967 ACGAACATGTTCTGAATATTTGCA 57.747 33.333 30.45 0.00 37.44 4.08
2455 2552 6.855836 ACGAACATGTTCTGAATATTTGCAT 58.144 32.000 30.45 6.92 37.44 3.96
2479 2576 1.532523 TCATGCCAGCAAACGATGAA 58.467 45.000 0.00 0.00 0.00 2.57
2498 2595 8.258007 ACGATGAACTGAGGAACTTCAAATATA 58.742 33.333 0.00 0.00 41.55 0.86
2602 2699 7.980099 AGCTATGTACTAGAACCAATGTTACAC 59.020 37.037 0.00 0.00 33.97 2.90
2603 2700 7.762615 GCTATGTACTAGAACCAATGTTACACA 59.237 37.037 0.00 0.00 33.97 3.72
2606 2703 7.502696 TGTACTAGAACCAATGTTACACAACT 58.497 34.615 0.00 0.00 33.97 3.16
2608 2705 9.649167 GTACTAGAACCAATGTTACACAACTAT 57.351 33.333 0.00 0.00 33.97 2.12
2658 2809 2.781945 CAGAAAGGTGTTTGTGGAGC 57.218 50.000 0.00 0.00 34.10 4.70
2659 2810 2.301346 CAGAAAGGTGTTTGTGGAGCT 58.699 47.619 0.00 0.00 34.10 4.09
2660 2811 2.033801 CAGAAAGGTGTTTGTGGAGCTG 59.966 50.000 0.00 0.00 34.10 4.24
2661 2812 0.746659 AAAGGTGTTTGTGGAGCTGC 59.253 50.000 0.00 0.00 0.00 5.25
2662 2813 0.395586 AAGGTGTTTGTGGAGCTGCA 60.396 50.000 2.72 2.72 0.00 4.41
2663 2814 0.395586 AGGTGTTTGTGGAGCTGCAA 60.396 50.000 10.44 0.00 0.00 4.08
2664 2815 0.675633 GGTGTTTGTGGAGCTGCAAT 59.324 50.000 10.44 0.00 0.00 3.56
2665 2816 1.336240 GGTGTTTGTGGAGCTGCAATC 60.336 52.381 10.44 0.00 0.00 2.67
2666 2817 0.961019 TGTTTGTGGAGCTGCAATCC 59.039 50.000 10.44 10.14 37.35 3.01
2667 2818 0.961019 GTTTGTGGAGCTGCAATCCA 59.039 50.000 10.44 14.79 44.63 3.41
2670 2821 3.169378 TGGAGCTGCAATCCACCA 58.831 55.556 14.79 5.22 41.96 4.17
2671 2822 1.001764 TGGAGCTGCAATCCACCAG 60.002 57.895 14.79 0.00 41.96 4.00
2672 2823 1.300963 GGAGCTGCAATCCACCAGA 59.699 57.895 11.83 0.00 36.79 3.86
2673 2824 0.322816 GGAGCTGCAATCCACCAGAA 60.323 55.000 11.83 0.00 36.79 3.02
2674 2825 1.538047 GAGCTGCAATCCACCAGAAA 58.462 50.000 1.02 0.00 0.00 2.52
2675 2826 1.471684 GAGCTGCAATCCACCAGAAAG 59.528 52.381 1.02 0.00 0.00 2.62
2676 2827 0.529378 GCTGCAATCCACCAGAAAGG 59.471 55.000 0.00 0.00 45.67 3.11
2694 2845 6.490040 CAGAAAGGTTTTAACATCTCCAGGAA 59.510 38.462 0.00 0.00 0.00 3.36
2770 2922 0.734889 GAGCGGGATGTGGACATTTG 59.265 55.000 0.00 0.00 36.57 2.32
2788 2940 2.631160 TGAACGGGTGACATGTTTCT 57.369 45.000 0.00 0.00 31.58 2.52
2805 2957 8.507249 ACATGTTTCTTTCAGCAGTTTATCTAC 58.493 33.333 0.00 0.00 0.00 2.59
2815 2968 8.942338 TCAGCAGTTTATCTACGAATGTATTT 57.058 30.769 0.00 0.00 0.00 1.40
2892 3049 7.052248 TCGTAGGTCATACTGTATTCTCTTCA 58.948 38.462 0.00 0.00 31.68 3.02
3025 3192 3.181464 GCTCCTGTGTATTTCCCTCTACC 60.181 52.174 0.00 0.00 0.00 3.18
3041 3208 5.363292 CCCTCTACCCTAGTTCCTTTTCTAC 59.637 48.000 0.00 0.00 0.00 2.59
3074 3241 5.319043 TCTGGATCCTAAAAGTTTGGTGT 57.681 39.130 14.23 0.00 0.00 4.16
3077 3244 6.940298 TCTGGATCCTAAAAGTTTGGTGTAAG 59.060 38.462 14.23 0.00 0.00 2.34
3078 3245 6.607019 TGGATCCTAAAAGTTTGGTGTAAGT 58.393 36.000 14.23 0.00 0.00 2.24
3079 3246 7.064229 TGGATCCTAAAAGTTTGGTGTAAGTT 58.936 34.615 14.23 0.00 0.00 2.66
3080 3247 8.219178 TGGATCCTAAAAGTTTGGTGTAAGTTA 58.781 33.333 14.23 0.00 0.00 2.24
3081 3248 8.509690 GGATCCTAAAAGTTTGGTGTAAGTTAC 58.490 37.037 3.84 6.06 0.00 2.50
3082 3249 9.281371 GATCCTAAAAGTTTGGTGTAAGTTACT 57.719 33.333 14.00 0.00 0.00 2.24
3083 3250 8.667076 TCCTAAAAGTTTGGTGTAAGTTACTC 57.333 34.615 14.00 10.18 0.00 2.59
3084 3251 8.266473 TCCTAAAAGTTTGGTGTAAGTTACTCA 58.734 33.333 14.00 9.45 0.00 3.41
3085 3252 8.557029 CCTAAAAGTTTGGTGTAAGTTACTCAG 58.443 37.037 14.00 1.63 0.00 3.35
3086 3253 9.321562 CTAAAAGTTTGGTGTAAGTTACTCAGA 57.678 33.333 14.00 5.58 0.00 3.27
3087 3254 8.570068 AAAAGTTTGGTGTAAGTTACTCAGAA 57.430 30.769 14.00 6.47 0.00 3.02
3088 3255 8.747538 AAAGTTTGGTGTAAGTTACTCAGAAT 57.252 30.769 14.00 5.02 0.00 2.40
3089 3256 9.841295 AAAGTTTGGTGTAAGTTACTCAGAATA 57.159 29.630 14.00 0.00 0.00 1.75
3090 3257 9.490379 AAGTTTGGTGTAAGTTACTCAGAATAG 57.510 33.333 14.00 0.00 0.00 1.73
3091 3258 8.867097 AGTTTGGTGTAAGTTACTCAGAATAGA 58.133 33.333 14.00 0.00 0.00 1.98
3092 3259 8.923683 GTTTGGTGTAAGTTACTCAGAATAGAC 58.076 37.037 14.00 0.94 0.00 2.59
3093 3260 8.418597 TTGGTGTAAGTTACTCAGAATAGACT 57.581 34.615 14.00 0.00 0.00 3.24
3094 3261 8.053026 TGGTGTAAGTTACTCAGAATAGACTC 57.947 38.462 14.00 0.00 0.00 3.36
3095 3262 7.889073 TGGTGTAAGTTACTCAGAATAGACTCT 59.111 37.037 14.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.857483 CATGAACGGGGCCATACATAA 58.143 47.619 4.39 0.00 0.00 1.90
1 2 1.544537 GCATGAACGGGGCCATACATA 60.545 52.381 4.39 0.00 0.00 2.29
2 3 0.823356 GCATGAACGGGGCCATACAT 60.823 55.000 4.39 2.26 0.00 2.29
47 48 4.824537 GCCTCAAGAAAAGTCTTCTCCTTT 59.175 41.667 0.00 0.00 42.45 3.11
49 50 3.556004 CGCCTCAAGAAAAGTCTTCTCCT 60.556 47.826 0.00 0.00 42.45 3.69
59 60 1.770294 AACCAACCGCCTCAAGAAAA 58.230 45.000 0.00 0.00 0.00 2.29
120 121 1.669999 TACCTTTCTACGGCGGCTCC 61.670 60.000 13.24 0.00 0.00 4.70
129 130 3.262405 TGGTGGTGTGGATACCTTTCTAC 59.738 47.826 0.00 0.00 41.43 2.59
144 145 2.721231 CCAAAGCGTGTGGTGGTG 59.279 61.111 0.00 0.00 0.00 4.17
202 203 3.207669 CCAGGAGAGGCAATGCGC 61.208 66.667 0.00 0.00 41.28 6.09
241 246 3.486383 AGAAGAATTTCCGTTTCCAGCA 58.514 40.909 0.00 0.00 33.64 4.41
253 258 4.327680 CTGGAGGAAACGGAGAAGAATTT 58.672 43.478 0.00 0.00 0.00 1.82
324 330 1.930908 GCTGCAGCTGGCTAAAGGTG 61.931 60.000 31.33 8.73 46.20 4.00
325 331 1.676967 GCTGCAGCTGGCTAAAGGT 60.677 57.895 31.33 0.00 45.15 3.50
349 355 0.038310 GGCTCCTAGCTGGGTTTGTT 59.962 55.000 16.69 0.00 41.99 2.83
358 364 0.830648 TTAATGCACGGCTCCTAGCT 59.169 50.000 0.00 0.00 41.99 3.32
359 365 1.330829 GTTTAATGCACGGCTCCTAGC 59.669 52.381 0.00 0.00 41.46 3.42
360 366 1.940613 GGTTTAATGCACGGCTCCTAG 59.059 52.381 0.00 0.00 0.00 3.02
361 367 1.279558 TGGTTTAATGCACGGCTCCTA 59.720 47.619 0.00 0.00 0.00 2.94
362 368 0.037590 TGGTTTAATGCACGGCTCCT 59.962 50.000 0.00 0.00 0.00 3.69
363 369 1.065551 GATGGTTTAATGCACGGCTCC 59.934 52.381 0.00 0.00 0.00 4.70
364 370 1.742831 TGATGGTTTAATGCACGGCTC 59.257 47.619 0.00 0.00 0.00 4.70
365 371 1.832883 TGATGGTTTAATGCACGGCT 58.167 45.000 0.00 0.00 0.00 5.52
366 372 2.645730 TTGATGGTTTAATGCACGGC 57.354 45.000 0.00 0.00 0.00 5.68
367 373 5.636965 TGAATTTTGATGGTTTAATGCACGG 59.363 36.000 0.00 0.00 0.00 4.94
368 374 6.670452 GCTGAATTTTGATGGTTTAATGCACG 60.670 38.462 0.00 0.00 0.00 5.34
369 375 6.402442 GGCTGAATTTTGATGGTTTAATGCAC 60.402 38.462 0.00 0.00 0.00 4.57
370 376 5.642919 GGCTGAATTTTGATGGTTTAATGCA 59.357 36.000 0.00 0.00 0.00 3.96
371 377 5.642919 TGGCTGAATTTTGATGGTTTAATGC 59.357 36.000 0.00 0.00 0.00 3.56
372 378 6.183360 CGTGGCTGAATTTTGATGGTTTAATG 60.183 38.462 0.00 0.00 0.00 1.90
373 379 5.868801 CGTGGCTGAATTTTGATGGTTTAAT 59.131 36.000 0.00 0.00 0.00 1.40
374 380 5.226396 CGTGGCTGAATTTTGATGGTTTAA 58.774 37.500 0.00 0.00 0.00 1.52
375 381 4.804108 CGTGGCTGAATTTTGATGGTTTA 58.196 39.130 0.00 0.00 0.00 2.01
376 382 3.652274 CGTGGCTGAATTTTGATGGTTT 58.348 40.909 0.00 0.00 0.00 3.27
377 383 2.610232 GCGTGGCTGAATTTTGATGGTT 60.610 45.455 0.00 0.00 0.00 3.67
382 388 2.816672 TGTATGCGTGGCTGAATTTTGA 59.183 40.909 0.00 0.00 0.00 2.69
396 402 4.024387 ACAAACCACACTACTTTGTATGCG 60.024 41.667 0.00 0.00 36.56 4.73
397 403 5.432885 ACAAACCACACTACTTTGTATGC 57.567 39.130 0.00 0.00 36.56 3.14
398 404 6.038825 TCCAACAAACCACACTACTTTGTATG 59.961 38.462 0.00 0.00 37.17 2.39
399 405 6.123651 TCCAACAAACCACACTACTTTGTAT 58.876 36.000 0.00 0.00 37.17 2.29
400 406 5.498393 TCCAACAAACCACACTACTTTGTA 58.502 37.500 0.00 0.00 37.17 2.41
401 407 4.337145 TCCAACAAACCACACTACTTTGT 58.663 39.130 0.00 0.00 39.30 2.83
402 408 4.974368 TCCAACAAACCACACTACTTTG 57.026 40.909 0.00 0.00 0.00 2.77
403 409 5.479027 ACTTTCCAACAAACCACACTACTTT 59.521 36.000 0.00 0.00 0.00 2.66
404 410 5.014202 ACTTTCCAACAAACCACACTACTT 58.986 37.500 0.00 0.00 0.00 2.24
405 411 4.595986 ACTTTCCAACAAACCACACTACT 58.404 39.130 0.00 0.00 0.00 2.57
406 412 4.976224 ACTTTCCAACAAACCACACTAC 57.024 40.909 0.00 0.00 0.00 2.73
407 413 5.587043 CACTACTTTCCAACAAACCACACTA 59.413 40.000 0.00 0.00 0.00 2.74
408 414 4.398044 CACTACTTTCCAACAAACCACACT 59.602 41.667 0.00 0.00 0.00 3.55
409 415 4.157105 ACACTACTTTCCAACAAACCACAC 59.843 41.667 0.00 0.00 0.00 3.82
410 416 4.156922 CACACTACTTTCCAACAAACCACA 59.843 41.667 0.00 0.00 0.00 4.17
411 417 4.396790 TCACACTACTTTCCAACAAACCAC 59.603 41.667 0.00 0.00 0.00 4.16
412 418 4.590918 TCACACTACTTTCCAACAAACCA 58.409 39.130 0.00 0.00 0.00 3.67
413 419 5.531287 AGATCACACTACTTTCCAACAAACC 59.469 40.000 0.00 0.00 0.00 3.27
414 420 6.619801 AGATCACACTACTTTCCAACAAAC 57.380 37.500 0.00 0.00 0.00 2.93
415 421 6.039270 CCAAGATCACACTACTTTCCAACAAA 59.961 38.462 0.00 0.00 0.00 2.83
416 422 5.530915 CCAAGATCACACTACTTTCCAACAA 59.469 40.000 0.00 0.00 0.00 2.83
417 423 5.063204 CCAAGATCACACTACTTTCCAACA 58.937 41.667 0.00 0.00 0.00 3.33
418 424 5.063880 ACCAAGATCACACTACTTTCCAAC 58.936 41.667 0.00 0.00 0.00 3.77
419 425 5.304686 ACCAAGATCACACTACTTTCCAA 57.695 39.130 0.00 0.00 0.00 3.53
420 426 4.974645 ACCAAGATCACACTACTTTCCA 57.025 40.909 0.00 0.00 0.00 3.53
421 427 4.870991 GCTACCAAGATCACACTACTTTCC 59.129 45.833 0.00 0.00 0.00 3.13
422 428 5.479306 TGCTACCAAGATCACACTACTTTC 58.521 41.667 0.00 0.00 0.00 2.62
423 429 5.483685 TGCTACCAAGATCACACTACTTT 57.516 39.130 0.00 0.00 0.00 2.66
424 430 5.483685 TTGCTACCAAGATCACACTACTT 57.516 39.130 0.00 0.00 0.00 2.24
437 443 1.671054 GCTGGTCGCTTGCTACCAA 60.671 57.895 17.56 4.90 44.92 3.67
438 444 2.047274 GCTGGTCGCTTGCTACCA 60.047 61.111 16.34 16.34 43.47 3.25
439 445 2.820037 GGCTGGTCGCTTGCTACC 60.820 66.667 9.06 9.06 39.13 3.18
440 446 2.047274 TGGCTGGTCGCTTGCTAC 60.047 61.111 0.00 0.00 39.13 3.58
441 447 2.265739 CTGGCTGGTCGCTTGCTA 59.734 61.111 0.00 0.00 39.13 3.49
442 448 4.711949 CCTGGCTGGTCGCTTGCT 62.712 66.667 1.62 0.00 39.13 3.91
443 449 3.984193 ATCCTGGCTGGTCGCTTGC 62.984 63.158 10.44 0.00 39.13 4.01
444 450 1.817099 GATCCTGGCTGGTCGCTTG 60.817 63.158 10.44 0.00 39.13 4.01
445 451 2.586792 GATCCTGGCTGGTCGCTT 59.413 61.111 10.44 0.00 39.13 4.68
446 452 3.842923 CGATCCTGGCTGGTCGCT 61.843 66.667 17.20 1.39 39.13 4.93
448 454 3.664025 TTGCGATCCTGGCTGGTCG 62.664 63.158 21.74 21.74 40.09 4.79
449 455 1.817099 CTTGCGATCCTGGCTGGTC 60.817 63.158 10.44 6.62 37.07 4.02
450 456 2.270205 CTTGCGATCCTGGCTGGT 59.730 61.111 10.44 0.00 37.07 4.00
451 457 2.515523 CCTTGCGATCCTGGCTGG 60.516 66.667 3.65 3.65 37.10 4.85
452 458 3.207669 GCCTTGCGATCCTGGCTG 61.208 66.667 0.00 0.00 41.92 4.85
453 459 1.699054 TATGCCTTGCGATCCTGGCT 61.699 55.000 12.15 0.00 45.11 4.75
454 460 1.227943 TATGCCTTGCGATCCTGGC 60.228 57.895 0.00 0.00 45.10 4.85
455 461 0.107456 AGTATGCCTTGCGATCCTGG 59.893 55.000 0.00 0.00 0.00 4.45
456 462 2.224042 TGTAGTATGCCTTGCGATCCTG 60.224 50.000 0.00 0.00 0.00 3.86
457 463 2.039418 TGTAGTATGCCTTGCGATCCT 58.961 47.619 0.00 0.00 0.00 3.24
458 464 2.526304 TGTAGTATGCCTTGCGATCC 57.474 50.000 0.00 0.00 0.00 3.36
459 465 4.556233 TGTATGTAGTATGCCTTGCGATC 58.444 43.478 0.00 0.00 0.00 3.69
460 466 4.600692 TGTATGTAGTATGCCTTGCGAT 57.399 40.909 0.00 0.00 0.00 4.58
461 467 4.202212 ACATGTATGTAGTATGCCTTGCGA 60.202 41.667 0.00 0.00 39.68 5.10
462 468 4.058124 ACATGTATGTAGTATGCCTTGCG 58.942 43.478 0.00 0.00 39.68 4.85
463 469 4.452455 GGACATGTATGTAGTATGCCTTGC 59.548 45.833 0.00 0.00 41.95 4.01
464 470 5.858381 AGGACATGTATGTAGTATGCCTTG 58.142 41.667 0.00 0.00 41.95 3.61
465 471 7.612065 TTAGGACATGTATGTAGTATGCCTT 57.388 36.000 0.00 0.00 41.95 4.35
466 472 7.676043 AGATTAGGACATGTATGTAGTATGCCT 59.324 37.037 0.00 0.00 41.95 4.75
467 473 7.761704 CAGATTAGGACATGTATGTAGTATGCC 59.238 40.741 0.00 0.00 41.95 4.40
468 474 8.523658 TCAGATTAGGACATGTATGTAGTATGC 58.476 37.037 0.00 0.00 41.95 3.14
474 480 9.778741 GGATTTTCAGATTAGGACATGTATGTA 57.221 33.333 0.00 0.00 41.95 2.29
475 481 7.442364 CGGATTTTCAGATTAGGACATGTATGT 59.558 37.037 0.00 0.00 45.16 2.29
476 482 7.657354 TCGGATTTTCAGATTAGGACATGTATG 59.343 37.037 0.00 0.00 0.00 2.39
477 483 7.657761 GTCGGATTTTCAGATTAGGACATGTAT 59.342 37.037 0.00 0.00 0.00 2.29
478 484 6.984474 GTCGGATTTTCAGATTAGGACATGTA 59.016 38.462 0.00 0.00 0.00 2.29
479 485 5.817816 GTCGGATTTTCAGATTAGGACATGT 59.182 40.000 0.00 0.00 0.00 3.21
480 486 5.237344 GGTCGGATTTTCAGATTAGGACATG 59.763 44.000 0.00 0.00 0.00 3.21
481 487 5.104527 TGGTCGGATTTTCAGATTAGGACAT 60.105 40.000 0.00 0.00 0.00 3.06
482 488 4.224147 TGGTCGGATTTTCAGATTAGGACA 59.776 41.667 0.00 0.00 0.00 4.02
483 489 4.571176 GTGGTCGGATTTTCAGATTAGGAC 59.429 45.833 0.00 0.00 0.00 3.85
484 490 4.224147 TGTGGTCGGATTTTCAGATTAGGA 59.776 41.667 0.00 0.00 0.00 2.94
485 491 4.513442 TGTGGTCGGATTTTCAGATTAGG 58.487 43.478 0.00 0.00 0.00 2.69
486 492 5.874810 TCTTGTGGTCGGATTTTCAGATTAG 59.125 40.000 0.00 0.00 0.00 1.73
487 493 5.800296 TCTTGTGGTCGGATTTTCAGATTA 58.200 37.500 0.00 0.00 0.00 1.75
488 494 4.651778 TCTTGTGGTCGGATTTTCAGATT 58.348 39.130 0.00 0.00 0.00 2.40
489 495 4.286297 TCTTGTGGTCGGATTTTCAGAT 57.714 40.909 0.00 0.00 0.00 2.90
490 496 3.762407 TCTTGTGGTCGGATTTTCAGA 57.238 42.857 0.00 0.00 0.00 3.27
491 497 5.447818 GCTATTCTTGTGGTCGGATTTTCAG 60.448 44.000 0.00 0.00 0.00 3.02
492 498 4.394920 GCTATTCTTGTGGTCGGATTTTCA 59.605 41.667 0.00 0.00 0.00 2.69
493 499 4.394920 TGCTATTCTTGTGGTCGGATTTTC 59.605 41.667 0.00 0.00 0.00 2.29
494 500 4.331968 TGCTATTCTTGTGGTCGGATTTT 58.668 39.130 0.00 0.00 0.00 1.82
495 501 3.950397 TGCTATTCTTGTGGTCGGATTT 58.050 40.909 0.00 0.00 0.00 2.17
496 502 3.627395 TGCTATTCTTGTGGTCGGATT 57.373 42.857 0.00 0.00 0.00 3.01
497 503 3.134623 TGATGCTATTCTTGTGGTCGGAT 59.865 43.478 0.00 0.00 0.00 4.18
498 504 2.499693 TGATGCTATTCTTGTGGTCGGA 59.500 45.455 0.00 0.00 0.00 4.55
499 505 2.905075 TGATGCTATTCTTGTGGTCGG 58.095 47.619 0.00 0.00 0.00 4.79
500 506 4.183865 TCTTGATGCTATTCTTGTGGTCG 58.816 43.478 0.00 0.00 0.00 4.79
501 507 5.877012 TCTTCTTGATGCTATTCTTGTGGTC 59.123 40.000 0.00 0.00 0.00 4.02
502 508 5.809001 TCTTCTTGATGCTATTCTTGTGGT 58.191 37.500 0.00 0.00 0.00 4.16
503 509 6.766944 AGATCTTCTTGATGCTATTCTTGTGG 59.233 38.462 0.00 0.00 35.14 4.17
504 510 7.306690 CGAGATCTTCTTGATGCTATTCTTGTG 60.307 40.741 0.00 0.00 35.14 3.33
505 511 6.700960 CGAGATCTTCTTGATGCTATTCTTGT 59.299 38.462 0.00 0.00 35.14 3.16
506 512 6.346758 GCGAGATCTTCTTGATGCTATTCTTG 60.347 42.308 0.00 0.00 35.14 3.02
507 513 5.695816 GCGAGATCTTCTTGATGCTATTCTT 59.304 40.000 0.00 0.00 35.14 2.52
508 514 5.221402 TGCGAGATCTTCTTGATGCTATTCT 60.221 40.000 0.00 0.00 35.14 2.40
509 515 4.987285 TGCGAGATCTTCTTGATGCTATTC 59.013 41.667 0.00 0.00 35.14 1.75
510 516 4.953667 TGCGAGATCTTCTTGATGCTATT 58.046 39.130 0.00 0.00 35.14 1.73
511 517 4.558178 CTGCGAGATCTTCTTGATGCTAT 58.442 43.478 0.00 0.00 35.14 2.97
512 518 3.798206 GCTGCGAGATCTTCTTGATGCTA 60.798 47.826 0.00 0.00 35.14 3.49
513 519 2.823984 CTGCGAGATCTTCTTGATGCT 58.176 47.619 0.00 0.00 35.14 3.79
514 520 1.261089 GCTGCGAGATCTTCTTGATGC 59.739 52.381 0.00 0.00 35.14 3.91
515 521 2.284684 GTGCTGCGAGATCTTCTTGATG 59.715 50.000 0.00 0.00 35.14 3.07
516 522 2.548875 GTGCTGCGAGATCTTCTTGAT 58.451 47.619 0.00 0.00 38.27 2.57
517 523 1.404717 GGTGCTGCGAGATCTTCTTGA 60.405 52.381 0.00 0.00 29.08 3.02
518 524 1.005340 GGTGCTGCGAGATCTTCTTG 58.995 55.000 0.00 0.00 0.00 3.02
519 525 0.459237 CGGTGCTGCGAGATCTTCTT 60.459 55.000 0.00 0.00 0.00 2.52
520 526 1.140589 CGGTGCTGCGAGATCTTCT 59.859 57.895 0.00 0.00 0.00 2.85
521 527 2.520904 GCGGTGCTGCGAGATCTTC 61.521 63.158 0.00 0.00 0.00 2.87
522 528 2.510238 GCGGTGCTGCGAGATCTT 60.510 61.111 0.00 0.00 0.00 2.40
523 529 2.584261 AATGCGGTGCTGCGAGATCT 62.584 55.000 0.00 0.00 37.81 2.75
524 530 0.875908 TAATGCGGTGCTGCGAGATC 60.876 55.000 0.00 0.00 37.81 2.75
525 531 0.250038 ATAATGCGGTGCTGCGAGAT 60.250 50.000 0.00 0.00 37.81 2.75
526 532 0.461870 AATAATGCGGTGCTGCGAGA 60.462 50.000 0.00 0.00 37.81 4.04
527 533 0.041839 GAATAATGCGGTGCTGCGAG 60.042 55.000 0.00 0.00 37.81 5.03
528 534 0.742635 TGAATAATGCGGTGCTGCGA 60.743 50.000 0.00 0.00 37.81 5.10
529 535 0.589729 GTGAATAATGCGGTGCTGCG 60.590 55.000 0.00 0.00 37.81 5.18
530 536 0.451383 TGTGAATAATGCGGTGCTGC 59.549 50.000 0.00 0.00 0.00 5.25
531 537 2.355444 TGATGTGAATAATGCGGTGCTG 59.645 45.455 0.00 0.00 0.00 4.41
532 538 2.642427 TGATGTGAATAATGCGGTGCT 58.358 42.857 0.00 0.00 0.00 4.40
533 539 3.419264 TTGATGTGAATAATGCGGTGC 57.581 42.857 0.00 0.00 0.00 5.01
534 540 7.984002 TTATTTTGATGTGAATAATGCGGTG 57.016 32.000 0.00 0.00 0.00 4.94
535 541 8.578308 CATTATTTTGATGTGAATAATGCGGT 57.422 30.769 12.92 0.00 43.50 5.68
540 546 9.454585 CGAGTGCATTATTTTGATGTGAATAAT 57.545 29.630 0.00 0.00 38.37 1.28
541 547 8.672815 TCGAGTGCATTATTTTGATGTGAATAA 58.327 29.630 0.00 0.00 33.63 1.40
542 548 8.207521 TCGAGTGCATTATTTTGATGTGAATA 57.792 30.769 0.00 0.00 0.00 1.75
543 549 7.087409 TCGAGTGCATTATTTTGATGTGAAT 57.913 32.000 0.00 0.00 0.00 2.57
544 550 6.493449 TCGAGTGCATTATTTTGATGTGAA 57.507 33.333 0.00 0.00 0.00 3.18
545 551 6.493449 TTCGAGTGCATTATTTTGATGTGA 57.507 33.333 0.00 0.00 0.00 3.58
546 552 8.839947 TTATTCGAGTGCATTATTTTGATGTG 57.160 30.769 0.00 0.00 0.00 3.21
547 553 7.645340 GCTTATTCGAGTGCATTATTTTGATGT 59.355 33.333 0.00 0.00 0.00 3.06
548 554 7.644945 TGCTTATTCGAGTGCATTATTTTGATG 59.355 33.333 0.00 0.00 0.00 3.07
549 555 7.645340 GTGCTTATTCGAGTGCATTATTTTGAT 59.355 33.333 0.00 0.00 37.76 2.57
550 556 6.966632 GTGCTTATTCGAGTGCATTATTTTGA 59.033 34.615 0.00 0.00 37.76 2.69
551 557 6.746822 TGTGCTTATTCGAGTGCATTATTTTG 59.253 34.615 0.00 0.00 37.76 2.44
552 558 6.851609 TGTGCTTATTCGAGTGCATTATTTT 58.148 32.000 0.00 0.00 37.76 1.82
553 559 6.435430 TGTGCTTATTCGAGTGCATTATTT 57.565 33.333 0.00 0.00 37.76 1.40
554 560 6.435430 TTGTGCTTATTCGAGTGCATTATT 57.565 33.333 0.00 0.00 37.76 1.40
555 561 6.094048 ACTTTGTGCTTATTCGAGTGCATTAT 59.906 34.615 0.00 0.00 37.76 1.28
556 562 5.411361 ACTTTGTGCTTATTCGAGTGCATTA 59.589 36.000 0.00 0.00 37.76 1.90
557 563 4.216257 ACTTTGTGCTTATTCGAGTGCATT 59.784 37.500 0.00 0.00 37.76 3.56
558 564 3.753272 ACTTTGTGCTTATTCGAGTGCAT 59.247 39.130 0.00 0.00 37.76 3.96
559 565 3.138304 ACTTTGTGCTTATTCGAGTGCA 58.862 40.909 0.00 0.00 0.00 4.57
560 566 3.813529 ACTTTGTGCTTATTCGAGTGC 57.186 42.857 0.00 0.00 0.00 4.40
561 567 5.147162 GGAAACTTTGTGCTTATTCGAGTG 58.853 41.667 0.00 0.00 0.00 3.51
562 568 4.819630 TGGAAACTTTGTGCTTATTCGAGT 59.180 37.500 0.00 0.00 0.00 4.18
563 569 5.356882 TGGAAACTTTGTGCTTATTCGAG 57.643 39.130 0.00 0.00 0.00 4.04
564 570 5.759506 TTGGAAACTTTGTGCTTATTCGA 57.240 34.783 0.00 0.00 0.00 3.71
565 571 6.820470 TTTTGGAAACTTTGTGCTTATTCG 57.180 33.333 0.00 0.00 0.00 3.34
566 572 7.969314 TGTTTTTGGAAACTTTGTGCTTATTC 58.031 30.769 3.98 0.00 44.33 1.75
567 573 7.913674 TGTTTTTGGAAACTTTGTGCTTATT 57.086 28.000 3.98 0.00 44.33 1.40
568 574 7.913674 TTGTTTTTGGAAACTTTGTGCTTAT 57.086 28.000 3.98 0.00 44.33 1.73
569 575 7.730364 TTTGTTTTTGGAAACTTTGTGCTTA 57.270 28.000 3.98 0.00 44.33 3.09
570 576 6.625873 TTTGTTTTTGGAAACTTTGTGCTT 57.374 29.167 3.98 0.00 44.33 3.91
571 577 6.038714 TGTTTTGTTTTTGGAAACTTTGTGCT 59.961 30.769 3.98 0.00 44.33 4.40
572 578 6.202226 TGTTTTGTTTTTGGAAACTTTGTGC 58.798 32.000 3.98 0.00 44.33 4.57
573 579 8.620533 TTTGTTTTGTTTTTGGAAACTTTGTG 57.379 26.923 3.98 0.00 44.33 3.33
574 580 9.809096 AATTTGTTTTGTTTTTGGAAACTTTGT 57.191 22.222 3.98 0.00 44.33 2.83
576 582 9.254133 CCAATTTGTTTTGTTTTTGGAAACTTT 57.746 25.926 3.98 0.00 44.33 2.66
577 583 7.383572 GCCAATTTGTTTTGTTTTTGGAAACTT 59.616 29.630 3.79 0.00 44.33 2.66
578 584 6.865726 GCCAATTTGTTTTGTTTTTGGAAACT 59.134 30.769 3.79 0.00 44.33 2.66
579 585 6.090088 GGCCAATTTGTTTTGTTTTTGGAAAC 59.910 34.615 0.00 0.00 44.29 2.78
580 586 6.159293 GGCCAATTTGTTTTGTTTTTGGAAA 58.841 32.000 0.00 0.00 36.55 3.13
581 587 5.243730 TGGCCAATTTGTTTTGTTTTTGGAA 59.756 32.000 0.61 0.00 36.55 3.53
582 588 4.766891 TGGCCAATTTGTTTTGTTTTTGGA 59.233 33.333 0.61 0.00 36.55 3.53
583 589 5.064441 TGGCCAATTTGTTTTGTTTTTGG 57.936 34.783 0.61 0.00 37.31 3.28
584 590 5.100943 CCTGGCCAATTTGTTTTGTTTTTG 58.899 37.500 7.01 0.00 0.00 2.44
585 591 5.012893 TCCTGGCCAATTTGTTTTGTTTTT 58.987 33.333 7.01 0.00 0.00 1.94
586 592 4.593956 TCCTGGCCAATTTGTTTTGTTTT 58.406 34.783 7.01 0.00 0.00 2.43
587 593 4.227864 TCCTGGCCAATTTGTTTTGTTT 57.772 36.364 7.01 0.00 0.00 2.83
588 594 3.922171 TCCTGGCCAATTTGTTTTGTT 57.078 38.095 7.01 0.00 0.00 2.83
589 595 3.807553 CTTCCTGGCCAATTTGTTTTGT 58.192 40.909 7.01 0.00 0.00 2.83
590 596 2.549329 GCTTCCTGGCCAATTTGTTTTG 59.451 45.455 7.01 0.00 0.00 2.44
841 878 4.536765 GAAAGTGTATGGATTGGATGGGT 58.463 43.478 0.00 0.00 0.00 4.51
876 916 3.841255 CCTTAGAATCCCTGTCTATCCCC 59.159 52.174 0.00 0.00 0.00 4.81
880 920 4.164204 GGAGCCTTAGAATCCCTGTCTAT 58.836 47.826 0.00 0.00 0.00 1.98
881 921 3.577919 GGAGCCTTAGAATCCCTGTCTA 58.422 50.000 0.00 0.00 0.00 2.59
910 953 3.380004 CAGAGATCTTCGCTACTCTTGGT 59.620 47.826 0.00 0.00 37.59 3.67
922 965 5.598005 TCCCTCTCTCAAATCAGAGATCTTC 59.402 44.000 0.00 0.00 46.37 2.87
945 994 0.579156 GTCGGCTGATTCGATGCTTC 59.421 55.000 0.00 0.00 38.93 3.86
986 1036 3.640257 CTCATGGCTGCTGCTGGGT 62.640 63.158 15.64 0.00 39.59 4.51
1038 1088 0.238553 GAACAACGAGGAAAGCAGCC 59.761 55.000 0.00 0.00 0.00 4.85
1115 1166 2.126346 GATGTTGTTGCTGCGCCC 60.126 61.111 4.18 0.00 0.00 6.13
1117 1168 0.318107 ACAAGATGTTGTTGCTGCGC 60.318 50.000 1.68 0.00 45.00 6.09
1151 1213 2.266055 GAGCACCTTCTGGTCCCG 59.734 66.667 0.00 0.00 46.60 5.14
1201 1263 5.130350 CAGAGTGGGGAAGAAAAGTTTGTA 58.870 41.667 0.00 0.00 0.00 2.41
1204 1266 2.959030 GCAGAGTGGGGAAGAAAAGTTT 59.041 45.455 0.00 0.00 0.00 2.66
1206 1268 1.202940 GGCAGAGTGGGGAAGAAAAGT 60.203 52.381 0.00 0.00 0.00 2.66
1208 1270 0.112412 GGGCAGAGTGGGGAAGAAAA 59.888 55.000 0.00 0.00 0.00 2.29
1209 1271 1.065410 TGGGCAGAGTGGGGAAGAAA 61.065 55.000 0.00 0.00 0.00 2.52
1225 1302 4.347607 AGGTGAAGAAATCTTTGGATGGG 58.652 43.478 0.00 0.00 36.11 4.00
1265 1350 8.812147 TCATCTTGTACAGTACAGTAACTTTG 57.188 34.615 13.20 6.54 40.24 2.77
1275 1360 6.701145 TGATCCTCTCATCTTGTACAGTAC 57.299 41.667 3.49 3.49 0.00 2.73
1307 1392 6.357367 TGTTCTCTCTTTTTCAGCTTTACCT 58.643 36.000 0.00 0.00 0.00 3.08
1310 1395 7.339466 AGGTTTGTTCTCTCTTTTTCAGCTTTA 59.661 33.333 0.00 0.00 0.00 1.85
1314 1399 5.506686 AGGTTTGTTCTCTCTTTTTCAGC 57.493 39.130 0.00 0.00 0.00 4.26
1411 1499 9.458374 CAACAGACCGTACAATTTCTTATTTTT 57.542 29.630 0.00 0.00 0.00 1.94
1412 1500 8.079809 CCAACAGACCGTACAATTTCTTATTTT 58.920 33.333 0.00 0.00 0.00 1.82
1413 1501 7.229907 ACCAACAGACCGTACAATTTCTTATTT 59.770 33.333 0.00 0.00 0.00 1.40
1414 1502 6.713450 ACCAACAGACCGTACAATTTCTTATT 59.287 34.615 0.00 0.00 0.00 1.40
1415 1503 6.235664 ACCAACAGACCGTACAATTTCTTAT 58.764 36.000 0.00 0.00 0.00 1.73
1419 1507 5.232463 TCTACCAACAGACCGTACAATTTC 58.768 41.667 0.00 0.00 0.00 2.17
1436 1524 5.453339 GCACAGCAGTCCTTATAATCTACCA 60.453 44.000 0.00 0.00 0.00 3.25
1451 1539 0.467384 ACTGAGAACAGCACAGCAGT 59.533 50.000 0.00 0.00 46.95 4.40
1497 1586 2.032204 GCACACTTGTCTTTCAGCTCAG 60.032 50.000 0.00 0.00 0.00 3.35
1501 1590 1.672881 ACTGCACACTTGTCTTTCAGC 59.327 47.619 0.00 0.00 0.00 4.26
1516 1605 0.758734 AGTTGACAGCCTACACTGCA 59.241 50.000 0.00 0.00 41.60 4.41
1521 1610 0.391228 TCGCAAGTTGACAGCCTACA 59.609 50.000 7.16 0.00 39.48 2.74
1522 1611 0.790814 GTCGCAAGTTGACAGCCTAC 59.209 55.000 7.16 0.00 36.37 3.18
1543 1632 3.393800 TGCACTGAACAAGCTCTACTTC 58.606 45.455 0.00 0.00 36.04 3.01
1714 1806 2.411765 CTTCCTTGGTGCGGGGAAGT 62.412 60.000 11.47 0.00 46.37 3.01
1753 1845 1.372997 GAAGACAGCTTCGCCGTGA 60.373 57.895 0.00 0.00 40.96 4.35
1843 1939 4.617530 CGAATCAAGGTGAGGTTCTCGTTA 60.618 45.833 0.00 0.00 32.35 3.18
1847 1943 2.028020 ACCGAATCAAGGTGAGGTTCTC 60.028 50.000 0.00 0.00 41.10 2.87
1880 1976 8.340618 AGATTGTAGCAATAATGTCAAGTGTT 57.659 30.769 0.00 0.00 0.00 3.32
1916 2012 3.502211 ACAACCGAATCAATGTGAGGTTC 59.498 43.478 0.00 0.00 39.65 3.62
1917 2013 3.253188 CACAACCGAATCAATGTGAGGTT 59.747 43.478 4.65 0.00 44.52 3.50
1918 2014 2.813754 CACAACCGAATCAATGTGAGGT 59.186 45.455 4.65 0.00 44.52 3.85
1919 2015 2.813754 ACACAACCGAATCAATGTGAGG 59.186 45.455 14.25 0.00 44.52 3.86
1920 2016 4.214119 AGAACACAACCGAATCAATGTGAG 59.786 41.667 14.25 0.00 44.52 3.51
1921 2017 4.133820 AGAACACAACCGAATCAATGTGA 58.866 39.130 14.25 0.00 44.52 3.58
1922 2018 4.488126 AGAACACAACCGAATCAATGTG 57.512 40.909 8.03 8.03 46.52 3.21
1923 2019 7.915293 TTATAGAACACAACCGAATCAATGT 57.085 32.000 0.00 0.00 0.00 2.71
1924 2020 8.233868 TGTTTATAGAACACAACCGAATCAATG 58.766 33.333 0.00 0.00 0.00 2.82
1925 2021 8.330466 TGTTTATAGAACACAACCGAATCAAT 57.670 30.769 0.00 0.00 0.00 2.57
1926 2022 7.731882 TGTTTATAGAACACAACCGAATCAA 57.268 32.000 0.00 0.00 0.00 2.57
1927 2023 7.731882 TTGTTTATAGAACACAACCGAATCA 57.268 32.000 0.00 0.00 0.00 2.57
1928 2024 9.061610 CAATTGTTTATAGAACACAACCGAATC 57.938 33.333 0.00 0.00 33.33 2.52
1929 2025 8.788806 TCAATTGTTTATAGAACACAACCGAAT 58.211 29.630 5.13 0.00 33.33 3.34
1930 2026 8.071368 GTCAATTGTTTATAGAACACAACCGAA 58.929 33.333 5.13 0.00 33.33 4.30
1931 2027 7.226918 TGTCAATTGTTTATAGAACACAACCGA 59.773 33.333 5.13 0.00 33.33 4.69
1932 2028 7.356540 TGTCAATTGTTTATAGAACACAACCG 58.643 34.615 5.13 0.00 33.33 4.44
1933 2029 9.691362 AATGTCAATTGTTTATAGAACACAACC 57.309 29.630 5.13 0.00 33.33 3.77
1955 2051 7.448161 TGTTCAGGAAGATTGTGACAATAATGT 59.552 33.333 11.28 0.00 44.25 2.71
1956 2052 7.819644 TGTTCAGGAAGATTGTGACAATAATG 58.180 34.615 11.28 6.16 0.00 1.90
1957 2053 8.408043 TTGTTCAGGAAGATTGTGACAATAAT 57.592 30.769 11.28 2.87 0.00 1.28
1958 2054 7.719193 TCTTGTTCAGGAAGATTGTGACAATAA 59.281 33.333 11.28 0.00 0.00 1.40
1959 2055 7.223584 TCTTGTTCAGGAAGATTGTGACAATA 58.776 34.615 11.28 0.00 0.00 1.90
1960 2056 6.064060 TCTTGTTCAGGAAGATTGTGACAAT 58.936 36.000 11.10 11.10 0.00 2.71
1961 2057 5.436175 TCTTGTTCAGGAAGATTGTGACAA 58.564 37.500 0.00 0.00 0.00 3.18
1962 2058 5.034852 TCTTGTTCAGGAAGATTGTGACA 57.965 39.130 0.00 0.00 0.00 3.58
1963 2059 5.278022 GGTTCTTGTTCAGGAAGATTGTGAC 60.278 44.000 0.00 0.00 29.60 3.67
1964 2060 4.821805 GGTTCTTGTTCAGGAAGATTGTGA 59.178 41.667 0.00 0.00 29.60 3.58
1965 2061 4.823989 AGGTTCTTGTTCAGGAAGATTGTG 59.176 41.667 0.00 0.00 29.60 3.33
1966 2062 5.053978 AGGTTCTTGTTCAGGAAGATTGT 57.946 39.130 0.00 0.00 29.60 2.71
1967 2063 5.049129 GTGAGGTTCTTGTTCAGGAAGATTG 60.049 44.000 0.00 0.00 29.60 2.67
1968 2064 5.066593 GTGAGGTTCTTGTTCAGGAAGATT 58.933 41.667 0.00 0.00 29.60 2.40
1969 2065 4.505742 GGTGAGGTTCTTGTTCAGGAAGAT 60.506 45.833 0.00 0.00 29.60 2.40
1970 2066 3.181454 GGTGAGGTTCTTGTTCAGGAAGA 60.181 47.826 0.00 0.00 0.00 2.87
1971 2067 3.142174 GGTGAGGTTCTTGTTCAGGAAG 58.858 50.000 0.00 0.00 0.00 3.46
2125 2221 0.678950 TCAGACTGTTGCATCGGTGA 59.321 50.000 13.95 3.66 0.00 4.02
2265 2361 4.309933 GGATATTTTTACCCCGGTAGACG 58.690 47.826 0.00 0.00 43.80 4.18
2269 2365 4.046450 ACAGGGATATTTTTACCCCGGTA 58.954 43.478 0.00 0.00 43.69 4.02
2320 2416 3.189287 CCACCAAGAGAAAAATGTCCTCG 59.811 47.826 0.00 0.00 32.52 4.63
2354 2450 1.063806 CTACTGCGACAGAAGTGCAC 58.936 55.000 9.40 9.40 36.75 4.57
2364 2460 0.389166 ACTGCTCAAGCTACTGCGAC 60.389 55.000 3.32 0.00 45.42 5.19
2365 2461 1.173913 TACTGCTCAAGCTACTGCGA 58.826 50.000 3.32 0.00 45.42 5.10
2366 2462 1.996292 TTACTGCTCAAGCTACTGCG 58.004 50.000 3.32 0.00 45.42 5.18
2429 2526 6.801377 TGCAAATATTCAGAACATGTTCGTTC 59.199 34.615 28.18 9.83 44.63 3.95
2432 2529 7.485595 TGAATGCAAATATTCAGAACATGTTCG 59.514 33.333 28.18 22.80 40.95 3.95
2453 2550 2.601314 CGTTTGCTGGCATGAATGAATG 59.399 45.455 0.00 0.00 0.00 2.67
2454 2551 2.492881 TCGTTTGCTGGCATGAATGAAT 59.507 40.909 0.00 0.00 0.00 2.57
2455 2552 1.885233 TCGTTTGCTGGCATGAATGAA 59.115 42.857 0.00 0.00 0.00 2.57
2498 2595 7.049799 ACACAACAGCTGGTGTAAATAAAAT 57.950 32.000 35.68 8.58 45.58 1.82
2510 2607 4.630894 TGAACTAAAACACAACAGCTGG 57.369 40.909 19.93 3.21 0.00 4.85
2512 2609 6.441274 CATGATGAACTAAAACACAACAGCT 58.559 36.000 0.00 0.00 0.00 4.24
2602 2699 7.413438 GCACTTCCTGTCTGTTCATAATAGTTG 60.413 40.741 0.00 0.00 0.00 3.16
2603 2700 6.595716 GCACTTCCTGTCTGTTCATAATAGTT 59.404 38.462 0.00 0.00 0.00 2.24
2606 2703 6.048732 TGCACTTCCTGTCTGTTCATAATA 57.951 37.500 0.00 0.00 0.00 0.98
2608 2705 4.040339 TCTGCACTTCCTGTCTGTTCATAA 59.960 41.667 0.00 0.00 0.00 1.90
2648 2799 0.961019 TGGATTGCAGCTCCACAAAC 59.039 50.000 14.32 0.00 37.87 2.93
2649 2800 3.435846 TGGATTGCAGCTCCACAAA 57.564 47.368 14.32 0.00 37.87 2.83
2654 2805 0.322816 TTCTGGTGGATTGCAGCTCC 60.323 55.000 8.82 9.82 0.00 4.70
2655 2806 1.471684 CTTTCTGGTGGATTGCAGCTC 59.528 52.381 8.82 0.00 0.00 4.09
2656 2807 1.542492 CTTTCTGGTGGATTGCAGCT 58.458 50.000 8.82 0.00 0.00 4.24
2657 2808 0.529378 CCTTTCTGGTGGATTGCAGC 59.471 55.000 0.00 0.00 0.00 5.25
2668 2819 5.183904 CCTGGAGATGTTAAAACCTTTCTGG 59.816 44.000 0.00 0.00 42.93 3.86
2669 2820 6.003950 TCCTGGAGATGTTAAAACCTTTCTG 58.996 40.000 0.00 0.00 0.00 3.02
2670 2821 6.200878 TCCTGGAGATGTTAAAACCTTTCT 57.799 37.500 0.00 0.00 0.00 2.52
2671 2822 6.715264 TCTTCCTGGAGATGTTAAAACCTTTC 59.285 38.462 0.00 0.00 0.00 2.62
2672 2823 6.610830 TCTTCCTGGAGATGTTAAAACCTTT 58.389 36.000 0.00 0.00 0.00 3.11
2673 2824 6.200878 TCTTCCTGGAGATGTTAAAACCTT 57.799 37.500 0.00 0.00 0.00 3.50
2674 2825 5.843019 TCTTCCTGGAGATGTTAAAACCT 57.157 39.130 0.00 0.00 0.00 3.50
2675 2826 6.894339 TTTCTTCCTGGAGATGTTAAAACC 57.106 37.500 0.00 0.00 0.00 3.27
2676 2827 7.712797 TGTTTTCTTCCTGGAGATGTTAAAAC 58.287 34.615 15.59 15.59 0.00 2.43
2694 2845 6.201044 CACTCTTGTGTACTCGATTGTTTTCT 59.799 38.462 0.00 0.00 39.24 2.52
2770 2922 3.314080 TGAAAGAAACATGTCACCCGTTC 59.686 43.478 0.00 0.00 0.00 3.95
2788 2940 8.942338 ATACATTCGTAGATAAACTGCTGAAA 57.058 30.769 0.00 0.00 35.04 2.69
2854 3008 3.262151 TGACCTACGATCCATCCAAACAA 59.738 43.478 0.00 0.00 0.00 2.83
2892 3049 6.947733 TGAAGTTTCAGAAATGTATCCATGGT 59.052 34.615 12.58 1.59 32.50 3.55
2992 3149 3.007920 CAGGAGCTCCAGGGTGCT 61.008 66.667 33.90 14.24 45.94 4.40
2993 3150 3.325753 ACAGGAGCTCCAGGGTGC 61.326 66.667 33.90 5.61 38.89 5.01
2994 3151 0.904865 TACACAGGAGCTCCAGGGTG 60.905 60.000 36.04 34.34 39.64 4.61
2995 3152 0.043334 ATACACAGGAGCTCCAGGGT 59.957 55.000 32.65 32.65 42.20 4.34
2996 3153 1.207791 AATACACAGGAGCTCCAGGG 58.792 55.000 33.90 29.39 38.89 4.45
2997 3154 2.420687 GGAAATACACAGGAGCTCCAGG 60.421 54.545 33.90 26.16 38.89 4.45
2998 3155 2.420687 GGGAAATACACAGGAGCTCCAG 60.421 54.545 33.90 28.31 38.89 3.86
2999 3156 1.559682 GGGAAATACACAGGAGCTCCA 59.440 52.381 33.90 14.09 38.89 3.86
3025 3192 7.780745 TCTGGAGATAGTAGAAAAGGAACTAGG 59.219 40.741 0.00 0.00 38.49 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.