Multiple sequence alignment - TraesCS5D01G101100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G101100 chr5D 100.000 3713 0 0 1 3713 114004383 114008095 0.000000e+00 6857.0
1 TraesCS5D01G101100 chr5D 100.000 2806 0 0 5318 8123 114009700 114012505 0.000000e+00 5182.0
2 TraesCS5D01G101100 chr5D 100.000 992 0 0 4158 5149 114008540 114009531 0.000000e+00 1832.0
3 TraesCS5D01G101100 chr5D 81.250 400 66 7 1968 2361 386977841 386978237 1.700000e-81 315.0
4 TraesCS5D01G101100 chr5D 77.305 564 87 23 2023 2557 63108190 63108741 2.220000e-75 294.0
5 TraesCS5D01G101100 chr5D 84.979 233 29 2 1687 1919 451123492 451123266 1.760000e-56 231.0
6 TraesCS5D01G101100 chr5D 96.296 135 5 0 5015 5149 256755101 256755235 1.060000e-53 222.0
7 TraesCS5D01G101100 chr5D 80.287 279 36 10 2738 3014 419370179 419369918 8.320000e-45 193.0
8 TraesCS5D01G101100 chr5D 96.330 109 3 1 1582 1690 560243042 560242935 2.330000e-40 178.0
9 TraesCS5D01G101100 chr5D 82.857 70 12 0 4344 4413 480049534 480049465 6.810000e-06 63.9
10 TraesCS5D01G101100 chr5D 94.595 37 2 0 1561 1597 295307363 295307327 3.170000e-04 58.4
11 TraesCS5D01G101100 chr5A 95.101 2715 71 21 5340 8045 119223308 119225969 0.000000e+00 4220.0
12 TraesCS5D01G101100 chr5A 94.386 1710 45 20 1773 3475 119220501 119222166 0.000000e+00 2579.0
13 TraesCS5D01G101100 chr5A 93.453 1619 52 18 1 1585 119217717 119219315 0.000000e+00 2353.0
14 TraesCS5D01G101100 chr5A 95.823 838 17 8 4158 4993 119222487 119223308 0.000000e+00 1338.0
15 TraesCS5D01G101100 chr5A 75.124 607 110 22 1979 2557 52440700 52441293 6.300000e-61 246.0
16 TraesCS5D01G101100 chr5A 94.891 137 5 1 5015 5149 676911601 676911465 6.390000e-51 213.0
17 TraesCS5D01G101100 chr5A 94.776 134 3 2 7988 8120 119225971 119226101 1.070000e-48 206.0
18 TraesCS5D01G101100 chr5B 90.006 1541 61 31 1 1521 124766031 124767498 0.000000e+00 1906.0
19 TraesCS5D01G101100 chr5B 95.664 1061 40 3 6295 7349 124771334 124772394 0.000000e+00 1700.0
20 TraesCS5D01G101100 chr5B 88.146 852 54 24 5400 6236 124770504 124771323 0.000000e+00 970.0
21 TraesCS5D01G101100 chr5B 89.281 737 32 16 7393 8123 124772536 124773231 0.000000e+00 880.0
22 TraesCS5D01G101100 chr5B 85.000 300 28 10 4642 4930 124767529 124767822 1.030000e-73 289.0
23 TraesCS5D01G101100 chr5B 80.508 354 53 4 4300 4638 396515808 396516160 2.910000e-64 257.0
24 TraesCS5D01G101100 chr5B 87.678 211 26 0 2807 3017 396514438 396514648 6.300000e-61 246.0
25 TraesCS5D01G101100 chr5B 95.536 112 4 1 1582 1693 464325467 464325577 2.330000e-40 178.0
26 TraesCS5D01G101100 chr5B 95.536 112 4 1 1579 1690 669302588 669302698 2.330000e-40 178.0
27 TraesCS5D01G101100 chr5B 95.413 109 4 1 1582 1690 322860996 322861103 1.080000e-38 172.0
28 TraesCS5D01G101100 chr5B 76.238 303 56 11 3143 3432 463888597 463888298 6.570000e-31 147.0
29 TraesCS5D01G101100 chr5B 78.261 161 23 9 2068 2221 470266036 470265881 8.680000e-15 93.5
30 TraesCS5D01G101100 chr5B 100.000 28 0 0 1553 1580 73344060 73344033 1.500000e-02 52.8
31 TraesCS5D01G101100 chr6D 84.238 774 101 12 2108 2866 16254268 16255035 0.000000e+00 734.0
32 TraesCS5D01G101100 chr6D 74.648 355 76 8 3179 3524 325750995 325750646 2.360000e-30 145.0
33 TraesCS5D01G101100 chr6D 80.347 173 17 7 7648 7804 462636945 462636774 1.850000e-21 115.0
34 TraesCS5D01G101100 chr6D 89.130 46 1 1 1541 1582 342786920 342786875 4.000000e-03 54.7
35 TraesCS5D01G101100 chr3D 79.821 892 121 24 2215 3079 303590167 303589308 5.430000e-166 595.0
36 TraesCS5D01G101100 chr3D 78.038 683 115 21 1967 2625 178594745 178595416 1.640000e-106 398.0
37 TraesCS5D01G101100 chr3D 86.266 233 23 2 1689 1921 233202304 233202081 2.260000e-60 244.0
38 TraesCS5D01G101100 chr3D 77.308 260 48 6 3189 3440 346361885 346362141 8.500000e-30 143.0
39 TraesCS5D01G101100 chr3D 100.000 28 0 0 1553 1580 514669939 514669966 1.500000e-02 52.8
40 TraesCS5D01G101100 chr6B 78.027 892 162 22 1967 2832 706742823 706743706 1.550000e-146 531.0
41 TraesCS5D01G101100 chr6B 79.741 617 93 19 2290 2891 226149063 226148464 1.260000e-112 418.0
42 TraesCS5D01G101100 chr6B 94.853 136 7 0 5014 5149 75032355 75032490 6.390000e-51 213.0
43 TraesCS5D01G101100 chr6B 92.593 54 4 0 7733 7786 120654624 120654571 2.430000e-10 78.7
44 TraesCS5D01G101100 chr6B 89.130 46 1 1 1541 1582 509850749 509850704 4.000000e-03 54.7
45 TraesCS5D01G101100 chr6B 89.130 46 1 1 1541 1582 531108901 531108856 4.000000e-03 54.7
46 TraesCS5D01G101100 chr6B 100.000 28 0 0 1555 1582 174251289 174251262 1.500000e-02 52.8
47 TraesCS5D01G101100 chr7D 77.347 799 129 30 2045 2817 563833194 563832422 7.540000e-115 425.0
48 TraesCS5D01G101100 chr7D 86.486 222 23 3 1689 1910 133352691 133352477 3.790000e-58 237.0
49 TraesCS5D01G101100 chr6A 78.686 624 98 23 2289 2891 151507925 151508534 4.600000e-102 383.0
50 TraesCS5D01G101100 chr6A 86.463 229 25 2 1691 1919 477512088 477511866 6.300000e-61 246.0
51 TraesCS5D01G101100 chr3A 78.957 537 94 9 2348 2871 523331279 523330749 1.680000e-91 348.0
52 TraesCS5D01G101100 chr3A 95.862 145 6 0 5003 5147 46966440 46966584 1.360000e-57 235.0
53 TraesCS5D01G101100 chr3A 95.413 109 4 1 1582 1690 642924831 642924938 1.080000e-38 172.0
54 TraesCS5D01G101100 chr3A 95.413 109 4 1 1582 1690 746352755 746352862 1.080000e-38 172.0
55 TraesCS5D01G101100 chr3A 77.005 187 25 6 7639 7808 545359555 545359740 3.120000e-14 91.6
56 TraesCS5D01G101100 chr3A 95.833 48 1 1 7748 7794 471582051 471582004 8.740000e-10 76.8
57 TraesCS5D01G101100 chr4D 75.353 779 132 39 1983 2732 99278429 99277682 3.660000e-83 320.0
58 TraesCS5D01G101100 chr4D 79.907 214 28 14 2018 2221 133604636 133604844 8.500000e-30 143.0
59 TraesCS5D01G101100 chr4D 76.970 165 23 4 7645 7794 327379583 327379747 6.760000e-11 80.5
60 TraesCS5D01G101100 chr3B 77.982 545 96 12 3179 3703 417717230 417717770 3.660000e-83 320.0
61 TraesCS5D01G101100 chr2D 88.158 228 21 1 1689 1916 200260178 200260399 4.830000e-67 267.0
62 TraesCS5D01G101100 chr2D 87.124 233 21 2 1689 1921 332586693 332586470 1.050000e-63 255.0
63 TraesCS5D01G101100 chr2D 91.667 120 6 4 1573 1690 75761117 75761234 6.520000e-36 163.0
64 TraesCS5D01G101100 chr2D 89.474 95 9 1 7715 7808 516329841 516329747 1.430000e-22 119.0
65 TraesCS5D01G101100 chr2D 78.698 169 20 9 7645 7799 481610781 481610947 1.870000e-16 99.0
66 TraesCS5D01G101100 chrUn 85.470 234 26 4 1689 1920 93062780 93062553 3.790000e-58 237.0
67 TraesCS5D01G101100 chrUn 93.750 48 2 1 7748 7794 74678739 74678692 4.070000e-08 71.3
68 TraesCS5D01G101100 chr2B 85.714 231 24 6 1689 1916 748510394 748510170 1.360000e-57 235.0
69 TraesCS5D01G101100 chr2B 96.154 52 2 0 7595 7646 607540361 607540310 1.450000e-12 86.1
70 TraesCS5D01G101100 chr2B 89.130 46 1 1 1541 1582 596455667 596455622 4.000000e-03 54.7
71 TraesCS5D01G101100 chr2B 100.000 28 0 0 5318 5345 141992758 141992731 1.500000e-02 52.8
72 TraesCS5D01G101100 chr7B 96.324 136 5 0 5014 5149 108270564 108270699 2.950000e-54 224.0
73 TraesCS5D01G101100 chr7B 94.643 112 5 1 1579 1690 34609645 34609755 1.080000e-38 172.0
74 TraesCS5D01G101100 chr7A 96.296 135 5 0 5015 5149 184175092 184175226 1.060000e-53 222.0
75 TraesCS5D01G101100 chr7A 94.286 140 7 1 5010 5149 198013442 198013304 6.390000e-51 213.0
76 TraesCS5D01G101100 chr1D 96.212 132 4 1 5015 5146 10657985 10657855 1.780000e-51 215.0
77 TraesCS5D01G101100 chr1D 95.495 111 4 1 1581 1691 366680749 366680640 8.380000e-40 176.0
78 TraesCS5D01G101100 chr2A 94.074 135 8 0 5015 5149 757030096 757029962 1.070000e-48 206.0
79 TraesCS5D01G101100 chr2A 80.537 149 11 7 7675 7808 659894309 659894164 1.870000e-16 99.0
80 TraesCS5D01G101100 chr2A 86.885 61 8 0 7645 7705 659894085 659894145 1.460000e-07 69.4
81 TraesCS5D01G101100 chr4B 77.288 295 50 9 3241 3527 550399997 550399712 3.030000e-34 158.0
82 TraesCS5D01G101100 chr4B 84.444 90 9 2 7608 7692 324978896 324978985 5.220000e-12 84.2
83 TraesCS5D01G101100 chr4A 78.302 212 32 10 2019 2221 427929040 427928834 3.080000e-24 124.0
84 TraesCS5D01G101100 chr1B 74.257 303 47 17 3349 3644 657185095 657185373 1.870000e-16 99.0
85 TraesCS5D01G101100 chr1A 88.889 63 7 0 7644 7706 326324097 326324035 2.430000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G101100 chr5D 114004383 114012505 8122 False 4623.666667 6857 100.0000 1 8123 3 chr5D.!!$F4 8122
1 TraesCS5D01G101100 chr5D 63108190 63108741 551 False 294.000000 294 77.3050 2023 2557 1 chr5D.!!$F1 534
2 TraesCS5D01G101100 chr5A 119217717 119226101 8384 False 2139.200000 4220 94.7078 1 8120 5 chr5A.!!$F2 8119
3 TraesCS5D01G101100 chr5A 52440700 52441293 593 False 246.000000 246 75.1240 1979 2557 1 chr5A.!!$F1 578
4 TraesCS5D01G101100 chr5B 124766031 124773231 7200 False 1149.000000 1906 89.6194 1 8123 5 chr5B.!!$F4 8122
5 TraesCS5D01G101100 chr5B 396514438 396516160 1722 False 251.500000 257 84.0930 2807 4638 2 chr5B.!!$F5 1831
6 TraesCS5D01G101100 chr6D 16254268 16255035 767 False 734.000000 734 84.2380 2108 2866 1 chr6D.!!$F1 758
7 TraesCS5D01G101100 chr3D 303589308 303590167 859 True 595.000000 595 79.8210 2215 3079 1 chr3D.!!$R2 864
8 TraesCS5D01G101100 chr3D 178594745 178595416 671 False 398.000000 398 78.0380 1967 2625 1 chr3D.!!$F1 658
9 TraesCS5D01G101100 chr6B 706742823 706743706 883 False 531.000000 531 78.0270 1967 2832 1 chr6B.!!$F2 865
10 TraesCS5D01G101100 chr6B 226148464 226149063 599 True 418.000000 418 79.7410 2290 2891 1 chr6B.!!$R3 601
11 TraesCS5D01G101100 chr7D 563832422 563833194 772 True 425.000000 425 77.3470 2045 2817 1 chr7D.!!$R2 772
12 TraesCS5D01G101100 chr6A 151507925 151508534 609 False 383.000000 383 78.6860 2289 2891 1 chr6A.!!$F1 602
13 TraesCS5D01G101100 chr3A 523330749 523331279 530 True 348.000000 348 78.9570 2348 2871 1 chr3A.!!$R2 523
14 TraesCS5D01G101100 chr4D 99277682 99278429 747 True 320.000000 320 75.3530 1983 2732 1 chr4D.!!$R1 749
15 TraesCS5D01G101100 chr3B 417717230 417717770 540 False 320.000000 320 77.9820 3179 3703 1 chr3B.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 373 0.390860 CAAGATAGGCGCTAGGCAGT 59.609 55.000 7.64 0.00 46.16 4.40 F
582 603 0.595095 GCAAAGTCACAAGCAGGAGG 59.405 55.000 0.00 0.00 0.00 4.30 F
963 994 0.931005 GCGAAGAAGGCAAGTATCGG 59.069 55.000 0.00 0.00 0.00 4.18 F
1365 1401 1.433879 CGCCTCCTCAGGTACTTCG 59.566 63.158 0.00 0.00 42.74 3.79 F
3119 4409 0.384230 GTGTGTGTATGTGTGTGCGC 60.384 55.000 0.00 0.00 0.00 6.09 F
3556 4917 0.247460 CCTGAGGACGCTGACAATGA 59.753 55.000 0.00 0.00 0.00 2.57 F
5022 7353 0.179048 TTGGATAGATGCAGTGGCGG 60.179 55.000 0.00 0.00 45.35 6.13 F
5024 7355 0.320247 GGATAGATGCAGTGGCGGAG 60.320 60.000 0.00 0.00 45.35 4.63 F
5058 7389 1.080638 TAGAGGGGGCCAAACATGTT 58.919 50.000 4.92 4.92 0.00 2.71 F
5059 7390 1.080638 AGAGGGGGCCAAACATGTTA 58.919 50.000 12.39 0.00 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1404 0.665835 CGCGATCTGTCTAGAGCCTT 59.334 55.000 0.00 0.00 35.96 4.35 R
2383 3607 0.391597 ACGACGGTGTCAAGGTGATT 59.608 50.000 0.00 0.00 32.09 2.57 R
2680 3943 1.065551 GAACTACGGCCATTTCCATGC 59.934 52.381 2.24 0.00 0.00 4.06 R
3291 4633 0.042188 CGTCGCCTTGAACAACACAG 60.042 55.000 0.00 0.00 0.00 3.66 R
5003 7334 0.179048 CCGCCACTGCATCTATCCAA 60.179 55.000 0.00 0.00 37.32 3.53 R
5335 7666 0.034059 GTCCATCTATCCAGTGGCGG 59.966 60.000 3.51 0.00 33.01 6.13 R
6845 11014 6.756074 GTGGTTCTTCACATCAACATTTGAAA 59.244 34.615 0.00 0.00 43.95 2.69 R
7061 11230 0.396435 AGGTGCTCGGAATGTGACAA 59.604 50.000 0.00 0.00 0.00 3.18 R
7103 11272 8.652810 GGAATTTCATCCCATTGTTGAAATAG 57.347 34.615 14.59 0.00 45.82 1.73 R
7160 11330 4.940046 TGCTTGAAAATTTCAGCAAAACCA 59.060 33.333 21.48 7.29 41.38 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 9.355916 CATGTCCTCCTATAGAAATCCGATATA 57.644 37.037 0.00 0.00 0.00 0.86
159 160 5.537295 CCATTCCATTGATCAAGCCAATCTA 59.463 40.000 14.54 0.00 32.40 1.98
176 177 6.397272 CCAATCTAGGTAAAAGCAATGCAAA 58.603 36.000 8.35 0.00 0.00 3.68
247 248 2.917933 TCAGAATTTATCCTGCCACGG 58.082 47.619 0.00 0.00 0.00 4.94
317 318 5.084818 TGCTTCCGAGTGAGAAATGATTA 57.915 39.130 0.00 0.00 0.00 1.75
321 322 7.768582 TGCTTCCGAGTGAGAAATGATTATTTA 59.231 33.333 0.00 0.00 36.66 1.40
354 355 1.305219 AAAGAAAGCGCGCTATGGCA 61.305 50.000 36.73 0.00 38.60 4.92
366 367 1.066858 GCTATGGCAAGATAGGCGCTA 60.067 52.381 7.64 0.00 38.54 4.26
370 371 1.069765 GCAAGATAGGCGCTAGGCA 59.930 57.895 7.64 0.00 46.16 4.75
371 372 0.948141 GCAAGATAGGCGCTAGGCAG 60.948 60.000 7.64 0.00 46.16 4.85
372 373 0.390860 CAAGATAGGCGCTAGGCAGT 59.609 55.000 7.64 0.00 46.16 4.40
373 374 0.390860 AAGATAGGCGCTAGGCAGTG 59.609 55.000 7.64 0.00 46.16 3.66
374 375 1.005630 GATAGGCGCTAGGCAGTGG 60.006 63.158 7.64 0.00 46.16 4.00
516 518 1.758440 TTGTTCTCTGCTCCAGCCGT 61.758 55.000 0.00 0.00 41.18 5.68
582 603 0.595095 GCAAAGTCACAAGCAGGAGG 59.405 55.000 0.00 0.00 0.00 4.30
631 652 2.439104 GGGGAGAAGCGAGCTGGAT 61.439 63.158 0.00 0.00 0.00 3.41
780 802 3.031013 CCCCCAAATCAGTAAATCACCC 58.969 50.000 0.00 0.00 0.00 4.61
785 807 4.082245 CCAAATCAGTAAATCACCCACCAC 60.082 45.833 0.00 0.00 0.00 4.16
786 808 2.465860 TCAGTAAATCACCCACCACG 57.534 50.000 0.00 0.00 0.00 4.94
794 816 2.122547 ACCCACCACGACCTCCTT 60.123 61.111 0.00 0.00 0.00 3.36
796 818 2.663196 CCACCACGACCTCCTTCC 59.337 66.667 0.00 0.00 0.00 3.46
963 994 0.931005 GCGAAGAAGGCAAGTATCGG 59.069 55.000 0.00 0.00 0.00 4.18
1365 1401 1.433879 CGCCTCCTCAGGTACTTCG 59.566 63.158 0.00 0.00 42.74 3.79
1368 1404 1.549170 GCCTCCTCAGGTACTTCGAAA 59.451 52.381 0.00 0.00 42.74 3.46
1370 1406 3.851098 CCTCCTCAGGTACTTCGAAAAG 58.149 50.000 0.00 0.00 34.60 2.27
1532 1568 4.652421 TGTACCCATGAGACTACCCATAAC 59.348 45.833 0.00 0.00 0.00 1.89
1549 1585 6.170846 CCATAACGGGGATTAACTTAGACT 57.829 41.667 0.00 0.00 0.00 3.24
1550 1586 7.294017 CCATAACGGGGATTAACTTAGACTA 57.706 40.000 0.00 0.00 0.00 2.59
1552 1588 7.015001 CCATAACGGGGATTAACTTAGACTAGT 59.985 40.741 0.00 0.00 0.00 2.57
1554 1590 7.961326 AACGGGGATTAACTTAGACTAGTAA 57.039 36.000 0.00 0.00 0.00 2.24
1555 1591 8.544687 AACGGGGATTAACTTAGACTAGTAAT 57.455 34.615 0.00 0.00 0.00 1.89
1556 1592 7.949434 ACGGGGATTAACTTAGACTAGTAATG 58.051 38.462 0.00 0.00 0.00 1.90
1557 1593 6.867293 CGGGGATTAACTTAGACTAGTAATGC 59.133 42.308 0.00 0.00 0.00 3.56
1558 1594 7.470981 CGGGGATTAACTTAGACTAGTAATGCA 60.471 40.741 0.00 0.00 0.00 3.96
1559 1595 8.376270 GGGGATTAACTTAGACTAGTAATGCAT 58.624 37.037 0.00 0.00 0.00 3.96
1560 1596 9.209175 GGGATTAACTTAGACTAGTAATGCATG 57.791 37.037 0.00 0.00 0.00 4.06
1561 1597 9.765795 GGATTAACTTAGACTAGTAATGCATGT 57.234 33.333 0.00 0.00 0.00 3.21
1591 1627 7.511268 AGTCTATGTTACTAGTACTCCCTCTG 58.489 42.308 0.91 0.00 0.00 3.35
1592 1628 7.127647 AGTCTATGTTACTAGTACTCCCTCTGT 59.872 40.741 0.91 0.00 0.00 3.41
1593 1629 7.774625 GTCTATGTTACTAGTACTCCCTCTGTT 59.225 40.741 0.91 0.00 0.00 3.16
1594 1630 8.334734 TCTATGTTACTAGTACTCCCTCTGTTT 58.665 37.037 0.91 0.00 0.00 2.83
1595 1631 6.830873 TGTTACTAGTACTCCCTCTGTTTC 57.169 41.667 0.91 0.00 0.00 2.78
1596 1632 6.309357 TGTTACTAGTACTCCCTCTGTTTCA 58.691 40.000 0.91 0.00 0.00 2.69
1597 1633 6.208204 TGTTACTAGTACTCCCTCTGTTTCAC 59.792 42.308 0.91 0.00 0.00 3.18
1598 1634 5.000570 ACTAGTACTCCCTCTGTTTCACT 57.999 43.478 0.00 0.00 0.00 3.41
1599 1635 5.395611 ACTAGTACTCCCTCTGTTTCACTT 58.604 41.667 0.00 0.00 0.00 3.16
1600 1636 5.839606 ACTAGTACTCCCTCTGTTTCACTTT 59.160 40.000 0.00 0.00 0.00 2.66
1601 1637 5.632034 AGTACTCCCTCTGTTTCACTTTT 57.368 39.130 0.00 0.00 0.00 2.27
1602 1638 6.742559 AGTACTCCCTCTGTTTCACTTTTA 57.257 37.500 0.00 0.00 0.00 1.52
1603 1639 7.317722 AGTACTCCCTCTGTTTCACTTTTAT 57.682 36.000 0.00 0.00 0.00 1.40
1604 1640 8.431910 AGTACTCCCTCTGTTTCACTTTTATA 57.568 34.615 0.00 0.00 0.00 0.98
1605 1641 8.877195 AGTACTCCCTCTGTTTCACTTTTATAA 58.123 33.333 0.00 0.00 0.00 0.98
1606 1642 9.152595 GTACTCCCTCTGTTTCACTTTTATAAG 57.847 37.037 0.00 0.00 37.40 1.73
1607 1643 7.168905 ACTCCCTCTGTTTCACTTTTATAAGG 58.831 38.462 0.00 0.00 35.61 2.69
1608 1644 5.944007 TCCCTCTGTTTCACTTTTATAAGGC 59.056 40.000 0.00 0.00 35.61 4.35
1609 1645 5.946377 CCCTCTGTTTCACTTTTATAAGGCT 59.054 40.000 0.00 0.00 35.61 4.58
1610 1646 6.434340 CCCTCTGTTTCACTTTTATAAGGCTT 59.566 38.462 4.58 4.58 35.61 4.35
1611 1647 7.039714 CCCTCTGTTTCACTTTTATAAGGCTTT 60.040 37.037 4.45 0.00 35.61 3.51
1612 1648 7.809806 CCTCTGTTTCACTTTTATAAGGCTTTG 59.190 37.037 4.45 0.00 35.61 2.77
1613 1649 8.232913 TCTGTTTCACTTTTATAAGGCTTTGT 57.767 30.769 4.45 0.00 35.61 2.83
1614 1650 9.344772 TCTGTTTCACTTTTATAAGGCTTTGTA 57.655 29.630 4.45 0.00 35.61 2.41
1615 1651 9.612620 CTGTTTCACTTTTATAAGGCTTTGTAG 57.387 33.333 4.45 0.00 35.61 2.74
1616 1652 9.344772 TGTTTCACTTTTATAAGGCTTTGTAGA 57.655 29.630 4.45 0.00 35.61 2.59
1619 1655 9.515226 TTCACTTTTATAAGGCTTTGTAGATGT 57.485 29.630 4.45 1.05 35.61 3.06
1620 1656 9.515226 TCACTTTTATAAGGCTTTGTAGATGTT 57.485 29.630 4.45 0.00 35.61 2.71
1625 1661 9.733556 TTTATAAGGCTTTGTAGATGTTTCAGA 57.266 29.630 4.45 0.00 0.00 3.27
1626 1662 5.948992 AAGGCTTTGTAGATGTTTCAGAC 57.051 39.130 0.00 0.00 0.00 3.51
1627 1663 4.973168 AGGCTTTGTAGATGTTTCAGACA 58.027 39.130 0.00 0.00 43.71 3.41
1638 1674 5.971895 ATGTTTCAGACATTGTGCAAAAC 57.028 34.783 0.00 2.73 46.80 2.43
1639 1675 4.814147 TGTTTCAGACATTGTGCAAAACA 58.186 34.783 12.56 12.56 33.98 2.83
1640 1676 4.863689 TGTTTCAGACATTGTGCAAAACAG 59.136 37.500 12.56 0.00 34.89 3.16
1641 1677 3.082698 TCAGACATTGTGCAAAACAGC 57.917 42.857 0.00 0.00 40.74 4.40
1642 1678 2.689471 TCAGACATTGTGCAAAACAGCT 59.311 40.909 0.00 0.00 40.74 4.24
1643 1679 3.047796 CAGACATTGTGCAAAACAGCTC 58.952 45.455 0.00 0.00 40.74 4.09
1644 1680 2.689471 AGACATTGTGCAAAACAGCTCA 59.311 40.909 0.00 0.00 40.74 4.26
1645 1681 3.130869 AGACATTGTGCAAAACAGCTCAA 59.869 39.130 0.00 5.99 41.87 3.02
1646 1682 4.053295 GACATTGTGCAAAACAGCTCAAT 58.947 39.130 9.58 9.58 41.87 2.57
1647 1683 4.444536 ACATTGTGCAAAACAGCTCAATT 58.555 34.783 11.96 4.12 41.87 2.32
1648 1684 4.877251 ACATTGTGCAAAACAGCTCAATTT 59.123 33.333 11.96 5.37 41.87 1.82
1649 1685 5.006941 ACATTGTGCAAAACAGCTCAATTTC 59.993 36.000 11.96 0.00 41.87 2.17
1650 1686 4.120792 TGTGCAAAACAGCTCAATTTCA 57.879 36.364 0.00 0.00 35.35 2.69
1651 1687 3.864583 TGTGCAAAACAGCTCAATTTCAC 59.135 39.130 0.00 0.00 35.35 3.18
1652 1688 4.114794 GTGCAAAACAGCTCAATTTCACT 58.885 39.130 0.00 0.00 34.99 3.41
1653 1689 4.567959 GTGCAAAACAGCTCAATTTCACTT 59.432 37.500 0.00 0.00 34.99 3.16
1654 1690 4.567558 TGCAAAACAGCTCAATTTCACTTG 59.432 37.500 0.00 0.00 34.99 3.16
1655 1691 4.567959 GCAAAACAGCTCAATTTCACTTGT 59.432 37.500 0.00 0.00 0.00 3.16
1656 1692 5.276536 GCAAAACAGCTCAATTTCACTTGTC 60.277 40.000 0.00 0.00 0.00 3.18
1657 1693 5.841957 AAACAGCTCAATTTCACTTGTCT 57.158 34.783 0.00 0.00 0.00 3.41
1658 1694 4.825546 ACAGCTCAATTTCACTTGTCTG 57.174 40.909 0.00 0.00 35.73 3.51
1659 1695 4.454678 ACAGCTCAATTTCACTTGTCTGA 58.545 39.130 12.20 0.00 34.76 3.27
1660 1696 4.883585 ACAGCTCAATTTCACTTGTCTGAA 59.116 37.500 12.20 0.00 34.76 3.02
1661 1697 5.357878 ACAGCTCAATTTCACTTGTCTGAAA 59.642 36.000 12.20 0.00 42.83 2.69
1662 1698 5.684626 CAGCTCAATTTCACTTGTCTGAAAC 59.315 40.000 0.00 0.00 41.76 2.78
1663 1699 4.672413 GCTCAATTTCACTTGTCTGAAACG 59.328 41.667 0.00 0.00 41.76 3.60
1664 1700 5.504010 GCTCAATTTCACTTGTCTGAAACGA 60.504 40.000 0.00 0.00 41.76 3.85
1665 1701 5.806286 TCAATTTCACTTGTCTGAAACGAC 58.194 37.500 0.00 0.00 41.76 4.34
1666 1702 5.584649 TCAATTTCACTTGTCTGAAACGACT 59.415 36.000 0.00 0.00 41.76 4.18
1667 1703 6.093495 TCAATTTCACTTGTCTGAAACGACTT 59.907 34.615 0.00 0.00 41.76 3.01
1668 1704 7.279090 TCAATTTCACTTGTCTGAAACGACTTA 59.721 33.333 0.00 0.00 41.76 2.24
1669 1705 5.961395 TTCACTTGTCTGAAACGACTTAC 57.039 39.130 0.00 0.00 35.00 2.34
1670 1706 5.001237 TCACTTGTCTGAAACGACTTACA 57.999 39.130 0.00 0.00 35.00 2.41
1671 1707 5.412640 TCACTTGTCTGAAACGACTTACAA 58.587 37.500 0.00 0.00 35.00 2.41
1672 1708 5.870433 TCACTTGTCTGAAACGACTTACAAA 59.130 36.000 0.00 0.00 35.00 2.83
1673 1709 6.369340 TCACTTGTCTGAAACGACTTACAAAA 59.631 34.615 0.00 0.00 35.00 2.44
1674 1710 6.682863 CACTTGTCTGAAACGACTTACAAAAG 59.317 38.462 0.00 0.00 38.77 2.27
1676 1712 6.102006 TGTCTGAAACGACTTACAAAAGTG 57.898 37.500 0.00 0.00 46.09 3.16
1677 1713 5.870433 TGTCTGAAACGACTTACAAAAGTGA 59.130 36.000 0.00 0.00 46.09 3.41
1678 1714 6.369340 TGTCTGAAACGACTTACAAAAGTGAA 59.631 34.615 0.00 0.00 46.09 3.18
1679 1715 6.681599 GTCTGAAACGACTTACAAAAGTGAAC 59.318 38.462 0.00 0.00 46.09 3.18
1680 1716 5.552807 TGAAACGACTTACAAAAGTGAACG 58.447 37.500 0.00 0.00 46.09 3.95
1681 1717 4.525411 AACGACTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 46.09 4.44
1682 1718 3.784338 ACGACTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 46.09 4.69
1683 1719 4.374399 ACGACTTACAAAAGTGAACGGAT 58.626 39.130 0.00 0.00 46.09 4.18
1684 1720 4.210537 ACGACTTACAAAAGTGAACGGATG 59.789 41.667 0.00 0.00 46.09 3.51
1685 1721 4.377022 CGACTTACAAAAGTGAACGGATGG 60.377 45.833 0.00 0.00 46.09 3.51
1686 1722 4.710324 ACTTACAAAAGTGAACGGATGGA 58.290 39.130 0.00 0.00 44.40 3.41
1687 1723 4.755123 ACTTACAAAAGTGAACGGATGGAG 59.245 41.667 0.00 0.00 44.40 3.86
1688 1724 3.208747 ACAAAAGTGAACGGATGGAGT 57.791 42.857 0.00 0.00 0.00 3.85
1689 1725 4.345859 ACAAAAGTGAACGGATGGAGTA 57.654 40.909 0.00 0.00 0.00 2.59
1690 1726 4.062991 ACAAAAGTGAACGGATGGAGTAC 58.937 43.478 0.00 0.00 0.00 2.73
1691 1727 3.329929 AAAGTGAACGGATGGAGTACC 57.670 47.619 0.00 0.00 0.00 3.34
1692 1728 2.233305 AGTGAACGGATGGAGTACCT 57.767 50.000 0.00 0.00 37.04 3.08
1693 1729 2.100989 AGTGAACGGATGGAGTACCTC 58.899 52.381 0.00 0.00 37.04 3.85
1725 1761 5.065988 GGGAATAACATATGTGTGGTGTCAC 59.934 44.000 9.63 0.00 43.87 3.67
1744 1780 6.853872 GTGTCACGCAACACTTCATTTATTAA 59.146 34.615 12.32 0.00 44.90 1.40
1784 2920 9.436957 CTTGTCTTGGTATGTAAGATGTTACTT 57.563 33.333 13.36 9.75 39.55 2.24
1857 2993 9.693739 TCCTTATTAAATCTTTGCCACATAAGA 57.306 29.630 0.00 0.00 35.08 2.10
1896 3032 6.014070 TGGACCTTATGTTACTGCTGAAGTTA 60.014 38.462 0.00 0.00 40.56 2.24
1929 3065 7.805083 ATGGGCAGTCTGAGATATTTAGTAT 57.195 36.000 3.32 0.00 0.00 2.12
1960 3096 5.705609 AATGATTGCTTCTTTAACGGTGT 57.294 34.783 0.00 0.00 0.00 4.16
1998 3134 2.760634 TGCATATGTGACCGAGTTGT 57.239 45.000 4.29 0.00 0.00 3.32
2000 3136 2.289382 TGCATATGTGACCGAGTTGTGT 60.289 45.455 4.29 0.00 0.00 3.72
2052 3190 1.566404 TATGCACATCGTTGGTAGCG 58.434 50.000 0.00 0.00 0.00 4.26
2383 3607 3.515630 CTCGAGCTTCTTGCACTTGATA 58.484 45.455 0.00 0.00 45.94 2.15
2385 3609 4.507710 TCGAGCTTCTTGCACTTGATAAT 58.492 39.130 0.00 0.00 45.94 1.28
2391 3615 5.105997 GCTTCTTGCACTTGATAATCACCTT 60.106 40.000 0.00 0.00 42.31 3.50
2404 3628 2.014554 CACCTTGACACCGTCGTCG 61.015 63.158 0.00 0.00 38.84 5.12
2408 3632 2.142418 CTTGACACCGTCGTCGTTGC 62.142 60.000 0.00 0.00 38.84 4.17
2680 3943 0.808755 GTGGGTTGGGCTAACATTCG 59.191 55.000 15.85 0.00 41.18 3.34
2916 4187 5.637006 TTGACCACAATTACCATAGTTGC 57.363 39.130 0.00 0.00 0.00 4.17
3005 4276 2.915869 TCCACTACCTCTTCCAACCAT 58.084 47.619 0.00 0.00 0.00 3.55
3006 4277 2.838202 TCCACTACCTCTTCCAACCATC 59.162 50.000 0.00 0.00 0.00 3.51
3045 4335 5.960811 TCTTCTAATGTCTCCTCTTCCACAT 59.039 40.000 0.00 0.00 0.00 3.21
3046 4336 5.860941 TCTAATGTCTCCTCTTCCACATC 57.139 43.478 0.00 0.00 0.00 3.06
3047 4337 5.523588 TCTAATGTCTCCTCTTCCACATCT 58.476 41.667 0.00 0.00 0.00 2.90
3048 4338 4.751767 AATGTCTCCTCTTCCACATCTC 57.248 45.455 0.00 0.00 0.00 2.75
3049 4339 3.464720 TGTCTCCTCTTCCACATCTCT 57.535 47.619 0.00 0.00 0.00 3.10
3050 4340 3.360867 TGTCTCCTCTTCCACATCTCTC 58.639 50.000 0.00 0.00 0.00 3.20
3051 4341 3.011144 TGTCTCCTCTTCCACATCTCTCT 59.989 47.826 0.00 0.00 0.00 3.10
3052 4342 3.632145 GTCTCCTCTTCCACATCTCTCTC 59.368 52.174 0.00 0.00 0.00 3.20
3053 4343 3.527253 TCTCCTCTTCCACATCTCTCTCT 59.473 47.826 0.00 0.00 0.00 3.10
3054 4344 3.885297 CTCCTCTTCCACATCTCTCTCTC 59.115 52.174 0.00 0.00 0.00 3.20
3055 4345 3.527253 TCCTCTTCCACATCTCTCTCTCT 59.473 47.826 0.00 0.00 0.00 3.10
3056 4346 3.885297 CCTCTTCCACATCTCTCTCTCTC 59.115 52.174 0.00 0.00 0.00 3.20
3057 4347 4.385643 CCTCTTCCACATCTCTCTCTCTCT 60.386 50.000 0.00 0.00 0.00 3.10
3058 4348 4.780815 TCTTCCACATCTCTCTCTCTCTC 58.219 47.826 0.00 0.00 0.00 3.20
3059 4349 4.474651 TCTTCCACATCTCTCTCTCTCTCT 59.525 45.833 0.00 0.00 0.00 3.10
3060 4350 4.422073 TCCACATCTCTCTCTCTCTCTC 57.578 50.000 0.00 0.00 0.00 3.20
3061 4351 4.040047 TCCACATCTCTCTCTCTCTCTCT 58.960 47.826 0.00 0.00 0.00 3.10
3062 4352 4.101585 TCCACATCTCTCTCTCTCTCTCTC 59.898 50.000 0.00 0.00 0.00 3.20
3063 4353 4.102210 CCACATCTCTCTCTCTCTCTCTCT 59.898 50.000 0.00 0.00 0.00 3.10
3064 4354 5.295950 CACATCTCTCTCTCTCTCTCTCTC 58.704 50.000 0.00 0.00 0.00 3.20
3065 4355 5.070180 CACATCTCTCTCTCTCTCTCTCTCT 59.930 48.000 0.00 0.00 0.00 3.10
3066 4356 5.304101 ACATCTCTCTCTCTCTCTCTCTCTC 59.696 48.000 0.00 0.00 0.00 3.20
3067 4357 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
3068 4358 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3069 4359 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3089 4379 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
3108 4398 1.351153 CGTGTGTGTGTGTGTGTGTA 58.649 50.000 0.00 0.00 0.00 2.90
3109 4399 1.930503 CGTGTGTGTGTGTGTGTGTAT 59.069 47.619 0.00 0.00 0.00 2.29
3110 4400 2.285544 CGTGTGTGTGTGTGTGTGTATG 60.286 50.000 0.00 0.00 0.00 2.39
3111 4401 2.675844 GTGTGTGTGTGTGTGTGTATGT 59.324 45.455 0.00 0.00 0.00 2.29
3112 4402 2.675348 TGTGTGTGTGTGTGTGTATGTG 59.325 45.455 0.00 0.00 0.00 3.21
3113 4403 2.675844 GTGTGTGTGTGTGTGTATGTGT 59.324 45.455 0.00 0.00 0.00 3.72
3114 4404 2.675348 TGTGTGTGTGTGTGTATGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
3115 4405 2.675844 GTGTGTGTGTGTGTATGTGTGT 59.324 45.455 0.00 0.00 0.00 3.72
3116 4406 2.675348 TGTGTGTGTGTGTATGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
3117 4407 1.668237 TGTGTGTGTGTATGTGTGTGC 59.332 47.619 0.00 0.00 0.00 4.57
3118 4408 0.933796 TGTGTGTGTATGTGTGTGCG 59.066 50.000 0.00 0.00 0.00 5.34
3119 4409 0.384230 GTGTGTGTATGTGTGTGCGC 60.384 55.000 0.00 0.00 0.00 6.09
3120 4410 1.154672 GTGTGTATGTGTGTGCGCG 60.155 57.895 0.00 0.00 0.00 6.86
3121 4411 2.202171 GTGTATGTGTGTGCGCGC 60.202 61.111 27.26 27.26 0.00 6.86
3122 4412 3.772560 TGTATGTGTGTGCGCGCG 61.773 61.111 28.44 28.44 0.00 6.86
3141 4479 1.228003 CGCCACCACCACTTTACCA 60.228 57.895 0.00 0.00 0.00 3.25
3285 4627 5.221185 GCATTGATGACATGCATAAAGAGGT 60.221 40.000 0.00 0.00 40.72 3.85
3291 4633 5.419542 TGACATGCATAAAGAGGTAGACAC 58.580 41.667 0.00 0.00 0.00 3.67
3401 4750 3.025978 GTGATGGATGAGGCCAAATTCA 58.974 45.455 5.01 2.80 42.16 2.57
3475 4824 1.996786 ATCGGTCGTCGCGGTTGTAT 61.997 55.000 6.13 0.00 39.05 2.29
3485 4834 1.227147 CGGTTGTATCGGCGACCAT 60.227 57.895 13.76 0.00 41.86 3.55
3486 4835 1.213094 CGGTTGTATCGGCGACCATC 61.213 60.000 13.76 11.06 41.86 3.51
3504 4853 0.250597 TCTCGTTCTGGAGGACGACA 60.251 55.000 6.06 0.00 34.74 4.35
3513 4862 0.323542 GGAGGACGACAAGGAGGAGA 60.324 60.000 0.00 0.00 0.00 3.71
3515 4864 1.893801 GAGGACGACAAGGAGGAGAAA 59.106 52.381 0.00 0.00 0.00 2.52
3556 4917 0.247460 CCTGAGGACGCTGACAATGA 59.753 55.000 0.00 0.00 0.00 2.57
3558 4919 0.388520 TGAGGACGCTGACAATGACG 60.389 55.000 0.00 0.00 0.00 4.35
3559 4920 1.078759 GAGGACGCTGACAATGACGG 61.079 60.000 0.00 0.00 0.00 4.79
3570 4931 3.019003 AATGACGGAGCGGTGGAGG 62.019 63.158 0.00 0.00 0.00 4.30
3572 4933 4.131088 GACGGAGCGGTGGAGGTC 62.131 72.222 0.00 0.00 37.86 3.85
3608 4969 1.189524 AGCCAGGCAACCGTACACTA 61.190 55.000 15.80 0.00 37.17 2.74
3610 4971 0.606604 CCAGGCAACCGTACACTACT 59.393 55.000 0.00 0.00 37.17 2.57
3623 4984 3.121929 ACACTACTCATGGAGGTGGAT 57.878 47.619 0.00 0.00 33.35 3.41
3637 4998 2.158900 AGGTGGATGATTACAAGCCTCG 60.159 50.000 0.00 0.00 0.00 4.63
3687 5048 2.028631 GCCGCGGGTAGGATGTAC 59.971 66.667 29.38 1.03 0.00 2.90
3689 5050 2.024590 GCCGCGGGTAGGATGTACTT 62.025 60.000 29.38 0.00 0.00 2.24
3697 5058 4.322499 CGGGTAGGATGTACTTCTTGTTGT 60.322 45.833 8.51 0.00 0.00 3.32
3703 5064 5.003804 GGATGTACTTCTTGTTGTGATGGT 58.996 41.667 8.51 0.00 0.00 3.55
3706 5067 6.371809 TGTACTTCTTGTTGTGATGGTTTC 57.628 37.500 0.00 0.00 0.00 2.78
3707 5068 5.883115 TGTACTTCTTGTTGTGATGGTTTCA 59.117 36.000 0.00 0.00 0.00 2.69
3710 5071 6.696411 ACTTCTTGTTGTGATGGTTTCAAAA 58.304 32.000 0.00 0.00 35.70 2.44
4193 5554 2.183478 TGAATGCGGGCATGGTATAG 57.817 50.000 6.95 0.00 36.68 1.31
4236 5597 2.014594 CTTACCGCCATTTCCGAGC 58.985 57.895 0.00 0.00 0.00 5.03
4242 5603 3.093278 CCATTTCCGAGCGTCTGC 58.907 61.111 0.00 0.00 43.24 4.26
4244 5605 1.741401 CATTTCCGAGCGTCTGCCA 60.741 57.895 0.00 0.00 44.31 4.92
4260 5621 1.668294 CCAGTGAGGTCGTGAAGCT 59.332 57.895 0.00 0.00 38.79 3.74
4405 5986 1.000274 GGTGGTGCATCAGGAAACAAC 60.000 52.381 0.00 0.00 0.00 3.32
4429 6010 1.217882 CGTCTTGAACGTGGCTTCTT 58.782 50.000 0.00 0.00 46.42 2.52
4468 6049 3.036084 CGTGCCTCGAGTTGCGTT 61.036 61.111 12.31 0.00 42.86 4.84
5006 7337 8.093927 ACCATTTTTCTACCAAATGTACATTGG 58.906 33.333 21.46 23.03 39.18 3.16
5007 7338 8.310382 CCATTTTTCTACCAAATGTACATTGGA 58.690 33.333 28.70 17.50 39.18 3.53
5008 7339 9.874205 CATTTTTCTACCAAATGTACATTGGAT 57.126 29.630 28.70 16.71 37.01 3.41
5011 7342 9.967451 TTTTCTACCAAATGTACATTGGATAGA 57.033 29.630 28.70 24.79 0.00 1.98
5013 7344 9.559732 TTCTACCAAATGTACATTGGATAGATG 57.440 33.333 22.73 14.86 0.00 2.90
5014 7345 6.639632 ACCAAATGTACATTGGATAGATGC 57.360 37.500 28.70 0.00 0.00 3.91
5015 7346 6.128486 ACCAAATGTACATTGGATAGATGCA 58.872 36.000 28.70 0.00 0.00 3.96
5016 7347 6.263842 ACCAAATGTACATTGGATAGATGCAG 59.736 38.462 28.70 13.17 0.00 4.41
5017 7348 6.263842 CCAAATGTACATTGGATAGATGCAGT 59.736 38.462 22.36 0.06 0.00 4.40
5018 7349 6.872628 AATGTACATTGGATAGATGCAGTG 57.127 37.500 20.19 5.21 40.68 3.66
5019 7350 4.707105 TGTACATTGGATAGATGCAGTGG 58.293 43.478 10.47 0.00 39.52 4.00
5020 7351 2.579873 ACATTGGATAGATGCAGTGGC 58.420 47.619 10.47 0.00 39.52 5.01
5021 7352 1.534163 CATTGGATAGATGCAGTGGCG 59.466 52.381 0.00 0.00 45.35 5.69
5022 7353 0.179048 TTGGATAGATGCAGTGGCGG 60.179 55.000 0.00 0.00 45.35 6.13
5023 7354 1.048160 TGGATAGATGCAGTGGCGGA 61.048 55.000 0.00 0.00 45.35 5.54
5024 7355 0.320247 GGATAGATGCAGTGGCGGAG 60.320 60.000 0.00 0.00 45.35 4.63
5042 7373 5.201713 CGGAGCCAGAAACTCAATATAGA 57.798 43.478 0.00 0.00 35.79 1.98
5043 7374 5.226396 CGGAGCCAGAAACTCAATATAGAG 58.774 45.833 0.00 0.00 41.44 2.43
5044 7375 5.546526 GGAGCCAGAAACTCAATATAGAGG 58.453 45.833 0.00 0.00 39.97 3.69
5045 7376 5.512232 GGAGCCAGAAACTCAATATAGAGGG 60.512 48.000 0.00 0.00 39.97 4.30
5046 7377 4.349342 AGCCAGAAACTCAATATAGAGGGG 59.651 45.833 0.00 0.00 39.97 4.79
5047 7378 4.505742 GCCAGAAACTCAATATAGAGGGGG 60.506 50.000 0.00 0.00 39.97 5.40
5048 7379 4.505742 CCAGAAACTCAATATAGAGGGGGC 60.506 50.000 0.00 0.00 39.97 5.80
5049 7380 3.653352 AGAAACTCAATATAGAGGGGGCC 59.347 47.826 0.00 0.00 39.97 5.80
5050 7381 2.815357 ACTCAATATAGAGGGGGCCA 57.185 50.000 4.39 0.00 39.97 5.36
5051 7382 3.074857 ACTCAATATAGAGGGGGCCAA 57.925 47.619 4.39 0.00 39.97 4.52
5052 7383 3.403322 ACTCAATATAGAGGGGGCCAAA 58.597 45.455 4.39 0.00 39.97 3.28
5053 7384 3.138468 ACTCAATATAGAGGGGGCCAAAC 59.862 47.826 4.39 0.00 39.97 2.93
5054 7385 3.127250 TCAATATAGAGGGGGCCAAACA 58.873 45.455 4.39 0.00 0.00 2.83
5055 7386 3.726859 TCAATATAGAGGGGGCCAAACAT 59.273 43.478 4.39 0.00 0.00 2.71
5056 7387 3.814504 ATATAGAGGGGGCCAAACATG 57.185 47.619 4.39 0.00 0.00 3.21
5057 7388 1.308877 ATAGAGGGGGCCAAACATGT 58.691 50.000 4.39 0.00 0.00 3.21
5058 7389 1.080638 TAGAGGGGGCCAAACATGTT 58.919 50.000 4.92 4.92 0.00 2.71
5059 7390 1.080638 AGAGGGGGCCAAACATGTTA 58.919 50.000 12.39 0.00 0.00 2.41
5060 7391 1.645919 AGAGGGGGCCAAACATGTTAT 59.354 47.619 12.39 0.00 0.00 1.89
5061 7392 2.856231 AGAGGGGGCCAAACATGTTATA 59.144 45.455 12.39 0.00 0.00 0.98
5062 7393 3.467103 AGAGGGGGCCAAACATGTTATAT 59.533 43.478 12.39 0.00 0.00 0.86
5063 7394 4.667858 AGAGGGGGCCAAACATGTTATATA 59.332 41.667 12.39 0.00 0.00 0.86
5064 7395 5.135362 AGAGGGGGCCAAACATGTTATATAA 59.865 40.000 12.39 0.00 0.00 0.98
5065 7396 5.976323 AGGGGGCCAAACATGTTATATAAT 58.024 37.500 12.39 0.00 0.00 1.28
5066 7397 5.779771 AGGGGGCCAAACATGTTATATAATG 59.220 40.000 12.39 5.11 0.00 1.90
5067 7398 5.542251 GGGGGCCAAACATGTTATATAATGT 59.458 40.000 12.39 0.00 38.66 2.71
5068 7399 6.042666 GGGGGCCAAACATGTTATATAATGTT 59.957 38.462 12.39 8.14 46.35 2.71
5069 7400 7.233757 GGGGGCCAAACATGTTATATAATGTTA 59.766 37.037 12.39 0.00 44.24 2.41
5070 7401 8.303876 GGGGCCAAACATGTTATATAATGTTAG 58.696 37.037 12.39 9.59 44.24 2.34
5071 7402 9.073475 GGGCCAAACATGTTATATAATGTTAGA 57.927 33.333 12.39 0.00 44.24 2.10
5072 7403 9.893305 GGCCAAACATGTTATATAATGTTAGAC 57.107 33.333 12.39 7.85 44.24 2.59
5077 7408 8.848474 ACATGTTATATAATGTTAGACAGGGC 57.152 34.615 0.00 0.00 33.19 5.19
5078 7409 7.883311 ACATGTTATATAATGTTAGACAGGGCC 59.117 37.037 0.00 0.00 33.19 5.80
5079 7410 7.381789 TGTTATATAATGTTAGACAGGGCCA 57.618 36.000 6.18 0.00 0.00 5.36
5080 7411 7.807198 TGTTATATAATGTTAGACAGGGCCAA 58.193 34.615 6.18 0.00 0.00 4.52
5081 7412 8.275758 TGTTATATAATGTTAGACAGGGCCAAA 58.724 33.333 6.18 0.00 0.00 3.28
5082 7413 9.297037 GTTATATAATGTTAGACAGGGCCAAAT 57.703 33.333 6.18 0.00 0.00 2.32
5083 7414 9.515226 TTATATAATGTTAGACAGGGCCAAATC 57.485 33.333 6.18 0.00 0.00 2.17
5084 7415 3.737559 ATGTTAGACAGGGCCAAATCA 57.262 42.857 6.18 0.00 0.00 2.57
5085 7416 3.737559 TGTTAGACAGGGCCAAATCAT 57.262 42.857 6.18 0.00 0.00 2.45
5086 7417 3.620488 TGTTAGACAGGGCCAAATCATC 58.380 45.455 6.18 0.00 0.00 2.92
5087 7418 3.266772 TGTTAGACAGGGCCAAATCATCT 59.733 43.478 6.18 0.49 0.00 2.90
5088 7419 4.473196 TGTTAGACAGGGCCAAATCATCTA 59.527 41.667 6.18 0.00 0.00 1.98
5089 7420 5.045213 TGTTAGACAGGGCCAAATCATCTAA 60.045 40.000 6.18 6.09 0.00 2.10
5090 7421 4.591321 AGACAGGGCCAAATCATCTAAA 57.409 40.909 6.18 0.00 0.00 1.85
5091 7422 5.134725 AGACAGGGCCAAATCATCTAAAT 57.865 39.130 6.18 0.00 0.00 1.40
5092 7423 5.136105 AGACAGGGCCAAATCATCTAAATC 58.864 41.667 6.18 0.00 0.00 2.17
5093 7424 5.103771 AGACAGGGCCAAATCATCTAAATCT 60.104 40.000 6.18 0.00 0.00 2.40
5094 7425 5.522641 ACAGGGCCAAATCATCTAAATCTT 58.477 37.500 6.18 0.00 0.00 2.40
5095 7426 6.672593 ACAGGGCCAAATCATCTAAATCTTA 58.327 36.000 6.18 0.00 0.00 2.10
5096 7427 6.547510 ACAGGGCCAAATCATCTAAATCTTAC 59.452 38.462 6.18 0.00 0.00 2.34
5097 7428 6.774656 CAGGGCCAAATCATCTAAATCTTACT 59.225 38.462 6.18 0.00 0.00 2.24
5098 7429 7.939039 CAGGGCCAAATCATCTAAATCTTACTA 59.061 37.037 6.18 0.00 0.00 1.82
5099 7430 8.502738 AGGGCCAAATCATCTAAATCTTACTAA 58.497 33.333 6.18 0.00 0.00 2.24
5100 7431 9.301897 GGGCCAAATCATCTAAATCTTACTAAT 57.698 33.333 4.39 0.00 0.00 1.73
5119 7450 9.757227 TTACTAATTTTGTTTGACAAATGGAGG 57.243 29.630 3.49 1.58 46.17 4.30
5120 7451 8.017418 ACTAATTTTGTTTGACAAATGGAGGA 57.983 30.769 3.49 0.00 46.17 3.71
5121 7452 8.650490 ACTAATTTTGTTTGACAAATGGAGGAT 58.350 29.630 3.49 0.00 46.17 3.24
5122 7453 9.492973 CTAATTTTGTTTGACAAATGGAGGATT 57.507 29.630 3.49 5.85 46.17 3.01
5124 7455 9.844257 AATTTTGTTTGACAAATGGAGGATTAA 57.156 25.926 3.49 0.00 46.17 1.40
5125 7456 8.885494 TTTTGTTTGACAAATGGAGGATTAAG 57.115 30.769 3.49 0.00 46.17 1.85
5126 7457 7.831691 TTGTTTGACAAATGGAGGATTAAGA 57.168 32.000 3.49 0.00 34.76 2.10
5127 7458 7.452880 TGTTTGACAAATGGAGGATTAAGAG 57.547 36.000 3.49 0.00 0.00 2.85
5128 7459 6.071952 TGTTTGACAAATGGAGGATTAAGAGC 60.072 38.462 3.49 0.00 0.00 4.09
5129 7460 5.178096 TGACAAATGGAGGATTAAGAGCA 57.822 39.130 0.00 0.00 0.00 4.26
5130 7461 4.943705 TGACAAATGGAGGATTAAGAGCAC 59.056 41.667 0.00 0.00 0.00 4.40
5131 7462 4.922206 ACAAATGGAGGATTAAGAGCACA 58.078 39.130 0.00 0.00 0.00 4.57
5132 7463 5.513233 ACAAATGGAGGATTAAGAGCACAT 58.487 37.500 0.00 0.00 0.00 3.21
5133 7464 6.662755 ACAAATGGAGGATTAAGAGCACATA 58.337 36.000 0.00 0.00 0.00 2.29
5134 7465 7.293073 ACAAATGGAGGATTAAGAGCACATAT 58.707 34.615 0.00 0.00 0.00 1.78
5135 7466 8.439971 ACAAATGGAGGATTAAGAGCACATATA 58.560 33.333 0.00 0.00 0.00 0.86
5136 7467 8.944029 CAAATGGAGGATTAAGAGCACATATAG 58.056 37.037 0.00 0.00 0.00 1.31
5137 7468 7.805083 ATGGAGGATTAAGAGCACATATAGT 57.195 36.000 0.00 0.00 0.00 2.12
5138 7469 7.618019 TGGAGGATTAAGAGCACATATAGTT 57.382 36.000 0.00 0.00 0.00 2.24
5139 7470 7.445121 TGGAGGATTAAGAGCACATATAGTTG 58.555 38.462 0.00 0.00 0.00 3.16
5140 7471 7.071196 TGGAGGATTAAGAGCACATATAGTTGT 59.929 37.037 0.00 0.00 0.00 3.32
5141 7472 8.585881 GGAGGATTAAGAGCACATATAGTTGTA 58.414 37.037 0.00 0.00 0.00 2.41
5374 7705 4.444164 GGACCACATTTTCCCATGTTTTGT 60.444 41.667 0.00 0.00 35.03 2.83
5470 9627 9.941664 AATTATTGTGAGATGATCGAATTTGTC 57.058 29.630 0.00 0.00 0.00 3.18
5903 10063 7.702772 TCGATACTAAAGAGATGCTTCAAAGAC 59.297 37.037 2.07 0.00 35.24 3.01
5975 10135 1.513158 CTTGAGACCACGGATCGCT 59.487 57.895 0.00 0.00 0.00 4.93
5982 10142 2.431057 AGACCACGGATCGCTTCTTATT 59.569 45.455 0.00 0.00 0.00 1.40
6651 10820 1.143838 TTCTGGTCATGGGCGATCG 59.856 57.895 11.69 11.69 0.00 3.69
6845 11014 3.151912 AGAGAAAGCAGCTGACCAAAT 57.848 42.857 20.43 0.00 0.00 2.32
7061 11230 1.747206 GCATCCGGTAACTGGATTGCT 60.747 52.381 0.00 0.00 44.12 3.91
7160 11330 0.682209 GTGATGCATGCCCTCCAGTT 60.682 55.000 16.68 0.00 0.00 3.16
7161 11331 0.681887 TGATGCATGCCCTCCAGTTG 60.682 55.000 16.68 0.00 0.00 3.16
7219 11389 0.250901 GCCAGAAGCACCTCTTGGAA 60.251 55.000 0.00 0.00 42.97 3.53
7335 11509 7.857456 TGGACATATGTACTTGTTGAATAGGT 58.143 34.615 18.90 0.00 0.00 3.08
7406 11695 5.072741 GGTATGGCAACTGTATCCATGAAT 58.927 41.667 18.41 0.00 40.52 2.57
7589 11879 7.780745 TCTGGAGATAGTAGAAAAGGAACTAGG 59.219 40.741 0.00 0.00 38.49 3.02
7615 11905 1.559682 GGGAAATACACAGGAGCTCCA 59.440 52.381 33.90 14.09 38.89 3.86
7722 12012 6.947733 TGAAGTTTCAGAAATGTATCCATGGT 59.052 34.615 12.58 1.59 32.50 3.55
7760 12050 3.262151 TGACCTACGATCCATCCAAACAA 59.738 43.478 0.00 0.00 0.00 2.83
7826 12121 8.942338 ATACATTCGTAGATAAACTGCTGAAA 57.058 30.769 0.00 0.00 35.04 2.69
7844 12139 3.314080 TGAAAGAAACATGTCACCCGTTC 59.686 43.478 0.00 0.00 0.00 3.95
7920 12216 6.201044 CACTCTTGTGTACTCGATTGTTTTCT 59.799 38.462 0.00 0.00 39.24 2.52
7938 12234 7.712797 TGTTTTCTTCCTGGAGATGTTAAAAC 58.287 34.615 15.59 15.59 0.00 2.43
7939 12235 6.894339 TTTCTTCCTGGAGATGTTAAAACC 57.106 37.500 0.00 0.00 0.00 3.27
7940 12236 5.843019 TCTTCCTGGAGATGTTAAAACCT 57.157 39.130 0.00 0.00 0.00 3.50
7942 12238 6.610830 TCTTCCTGGAGATGTTAAAACCTTT 58.389 36.000 0.00 0.00 0.00 3.11
7943 12239 6.715264 TCTTCCTGGAGATGTTAAAACCTTTC 59.285 38.462 0.00 0.00 0.00 2.62
7945 12241 6.003950 TCCTGGAGATGTTAAAACCTTTCTG 58.996 40.000 0.00 0.00 0.00 3.02
7946 12242 5.183904 CCTGGAGATGTTAAAACCTTTCTGG 59.816 44.000 0.00 0.00 42.93 3.86
7957 12253 0.529378 CCTTTCTGGTGGATTGCAGC 59.471 55.000 0.00 0.00 0.00 5.25
7958 12254 1.542492 CTTTCTGGTGGATTGCAGCT 58.458 50.000 8.82 0.00 0.00 4.24
7959 12255 1.471684 CTTTCTGGTGGATTGCAGCTC 59.528 52.381 8.82 0.00 0.00 4.09
7960 12256 0.322816 TTCTGGTGGATTGCAGCTCC 60.323 55.000 8.82 9.82 0.00 4.70
7961 12257 1.001764 CTGGTGGATTGCAGCTCCA 60.002 57.895 14.32 14.32 40.49 3.86
7965 12261 3.435846 TGGATTGCAGCTCCACAAA 57.564 47.368 14.32 0.00 37.87 2.83
7966 12262 0.961019 TGGATTGCAGCTCCACAAAC 59.039 50.000 14.32 0.00 37.87 2.93
8006 12302 4.040339 TCTGCACTTCCTGTCTGTTCATAA 59.960 41.667 0.00 0.00 0.00 1.90
8008 12304 6.048732 TGCACTTCCTGTCTGTTCATAATA 57.951 37.500 0.00 0.00 0.00 0.98
8011 12307 6.595716 GCACTTCCTGTCTGTTCATAATAGTT 59.404 38.462 0.00 0.00 0.00 2.24
8012 12308 7.413438 GCACTTCCTGTCTGTTCATAATAGTTG 60.413 40.741 0.00 0.00 0.00 3.16
8102 12450 6.441274 CATGATGAACTAAAACACAACAGCT 58.559 36.000 0.00 0.00 0.00 4.24
8104 12452 4.630894 TGAACTAAAACACAACAGCTGG 57.369 40.909 19.93 3.21 0.00 4.85
8116 12464 7.049799 ACACAACAGCTGGTGTAAATAAAAT 57.950 32.000 35.68 8.58 45.58 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 5.222254 TGGCTTATTGGGACTAAACCTTCTT 60.222 40.000 0.00 0.00 0.00 2.52
159 160 5.754890 CAGTTTCTTTGCATTGCTTTTACCT 59.245 36.000 10.49 0.00 0.00 3.08
176 177 5.824624 ACATGTGTTTCTCATCACAGTTTCT 59.175 36.000 0.00 0.00 45.56 2.52
290 291 6.450545 TCATTTCTCACTCGGAAGCATATAG 58.549 40.000 0.00 0.00 0.00 1.31
291 292 6.405278 TCATTTCTCACTCGGAAGCATATA 57.595 37.500 0.00 0.00 0.00 0.86
345 346 1.630244 GCGCCTATCTTGCCATAGCG 61.630 60.000 0.00 0.00 44.31 4.26
354 355 0.390860 CACTGCCTAGCGCCTATCTT 59.609 55.000 2.29 0.00 36.24 2.40
375 376 2.754946 ATTCTGCATTTTGCCACTGG 57.245 45.000 0.00 0.00 44.23 4.00
516 518 1.144708 TGGTTGCTGATGGGAAAGTGA 59.855 47.619 0.00 0.00 0.00 3.41
582 603 3.777522 TCCTCTTTCCAATCCTCTTCTCC 59.222 47.826 0.00 0.00 0.00 3.71
631 652 1.153647 CTCAAGGCCGACGTATGCA 60.154 57.895 10.54 0.00 0.00 3.96
777 799 2.122547 AAGGAGGTCGTGGTGGGT 60.123 61.111 0.00 0.00 0.00 4.51
780 802 2.663196 GGGAAGGAGGTCGTGGTG 59.337 66.667 0.00 0.00 0.00 4.17
785 807 1.597461 GTTGAGGGGAAGGAGGTCG 59.403 63.158 0.00 0.00 0.00 4.79
786 808 1.597461 CGTTGAGGGGAAGGAGGTC 59.403 63.158 0.00 0.00 0.00 3.85
963 994 4.575236 GGAGACCGATTCCAATTAAAGACC 59.425 45.833 0.00 0.00 34.74 3.85
1105 1136 2.659610 GTCCTGGACGCTTGCTCT 59.340 61.111 11.71 0.00 0.00 4.09
1365 1401 3.120041 GCGATCTGTCTAGAGCCTTTTC 58.880 50.000 0.00 0.00 35.96 2.29
1368 1404 0.665835 CGCGATCTGTCTAGAGCCTT 59.334 55.000 0.00 0.00 35.96 4.35
1370 1406 1.371145 GCGCGATCTGTCTAGAGCC 60.371 63.158 12.10 0.00 35.96 4.70
1409 1445 2.598439 CGCGAGCATCTGAGTATTTTGC 60.598 50.000 0.00 0.00 0.00 3.68
1532 1568 6.867293 GCATTACTAGTCTAAGTTAATCCCCG 59.133 42.308 0.00 0.00 0.00 5.73
1585 1621 5.946377 AGCCTTATAAAAGTGAAACAGAGGG 59.054 40.000 0.00 0.00 41.43 4.30
1586 1622 7.454260 AAGCCTTATAAAAGTGAAACAGAGG 57.546 36.000 0.00 0.00 41.43 3.69
1587 1623 8.352942 ACAAAGCCTTATAAAAGTGAAACAGAG 58.647 33.333 0.00 0.00 41.43 3.35
1588 1624 8.232913 ACAAAGCCTTATAAAAGTGAAACAGA 57.767 30.769 0.00 0.00 41.43 3.41
1593 1629 9.515226 ACATCTACAAAGCCTTATAAAAGTGAA 57.485 29.630 0.00 0.00 0.00 3.18
1594 1630 9.515226 AACATCTACAAAGCCTTATAAAAGTGA 57.485 29.630 0.00 0.00 0.00 3.41
1599 1635 9.733556 TCTGAAACATCTACAAAGCCTTATAAA 57.266 29.630 0.00 0.00 0.00 1.40
1600 1636 9.162764 GTCTGAAACATCTACAAAGCCTTATAA 57.837 33.333 0.00 0.00 0.00 0.98
1601 1637 8.318412 TGTCTGAAACATCTACAAAGCCTTATA 58.682 33.333 0.00 0.00 31.20 0.98
1602 1638 7.168219 TGTCTGAAACATCTACAAAGCCTTAT 58.832 34.615 0.00 0.00 31.20 1.73
1603 1639 6.530120 TGTCTGAAACATCTACAAAGCCTTA 58.470 36.000 0.00 0.00 31.20 2.69
1604 1640 5.376625 TGTCTGAAACATCTACAAAGCCTT 58.623 37.500 0.00 0.00 31.20 4.35
1605 1641 4.973168 TGTCTGAAACATCTACAAAGCCT 58.027 39.130 0.00 0.00 31.20 4.58
1606 1642 5.886960 ATGTCTGAAACATCTACAAAGCC 57.113 39.130 0.00 0.00 45.78 4.35
1616 1652 9.926214 AGCTGTTTTGCACAATGTCTGAAACAT 62.926 37.037 14.04 3.38 42.06 2.71
1617 1653 4.814147 TGTTTTGCACAATGTCTGAAACA 58.186 34.783 11.27 11.27 43.51 2.83
1618 1654 4.259930 GCTGTTTTGCACAATGTCTGAAAC 60.260 41.667 0.00 7.59 33.87 2.78
1619 1655 3.864583 GCTGTTTTGCACAATGTCTGAAA 59.135 39.130 0.00 0.00 33.87 2.69
1620 1656 3.130869 AGCTGTTTTGCACAATGTCTGAA 59.869 39.130 0.00 0.00 33.87 3.02
1621 1657 2.689471 AGCTGTTTTGCACAATGTCTGA 59.311 40.909 0.00 0.00 33.87 3.27
1622 1658 3.047796 GAGCTGTTTTGCACAATGTCTG 58.952 45.455 0.00 0.00 33.87 3.51
1623 1659 2.689471 TGAGCTGTTTTGCACAATGTCT 59.311 40.909 0.00 0.00 33.87 3.41
1624 1660 3.082698 TGAGCTGTTTTGCACAATGTC 57.917 42.857 0.00 0.00 33.87 3.06
1625 1661 3.523606 TTGAGCTGTTTTGCACAATGT 57.476 38.095 0.00 0.00 38.28 2.71
1628 1664 4.329528 GTGAAATTGAGCTGTTTTGCACAA 59.670 37.500 0.00 0.00 44.68 3.33
1629 1665 3.864583 GTGAAATTGAGCTGTTTTGCACA 59.135 39.130 0.00 0.00 34.99 4.57
1630 1666 4.114794 AGTGAAATTGAGCTGTTTTGCAC 58.885 39.130 0.00 0.00 34.99 4.57
1631 1667 4.389890 AGTGAAATTGAGCTGTTTTGCA 57.610 36.364 0.00 0.00 34.99 4.08
1632 1668 4.567959 ACAAGTGAAATTGAGCTGTTTTGC 59.432 37.500 0.00 0.00 34.20 3.68
1633 1669 6.020121 CAGACAAGTGAAATTGAGCTGTTTTG 60.020 38.462 0.00 0.00 34.50 2.44
1634 1670 6.038356 CAGACAAGTGAAATTGAGCTGTTTT 58.962 36.000 0.00 0.00 34.50 2.43
1635 1671 5.357878 TCAGACAAGTGAAATTGAGCTGTTT 59.642 36.000 0.00 0.00 37.38 2.83
1636 1672 4.883585 TCAGACAAGTGAAATTGAGCTGTT 59.116 37.500 0.00 0.00 37.38 3.16
1637 1673 4.454678 TCAGACAAGTGAAATTGAGCTGT 58.545 39.130 0.00 0.00 37.38 4.40
1638 1674 5.428496 TTCAGACAAGTGAAATTGAGCTG 57.572 39.130 0.00 5.01 37.41 4.24
1639 1675 5.504665 CGTTTCAGACAAGTGAAATTGAGCT 60.505 40.000 2.59 0.00 45.71 4.09
1640 1676 4.672413 CGTTTCAGACAAGTGAAATTGAGC 59.328 41.667 2.59 0.00 45.71 4.26
1641 1677 5.904080 GTCGTTTCAGACAAGTGAAATTGAG 59.096 40.000 2.59 0.00 45.71 3.02
1642 1678 5.584649 AGTCGTTTCAGACAAGTGAAATTGA 59.415 36.000 2.59 2.32 45.71 2.57
1643 1679 5.810525 AGTCGTTTCAGACAAGTGAAATTG 58.189 37.500 2.59 0.24 45.71 2.32
1644 1680 6.436843 AAGTCGTTTCAGACAAGTGAAATT 57.563 33.333 2.59 0.00 45.71 1.82
1645 1681 6.537301 TGTAAGTCGTTTCAGACAAGTGAAAT 59.463 34.615 2.59 0.00 45.71 2.17
1646 1682 5.870433 TGTAAGTCGTTTCAGACAAGTGAAA 59.130 36.000 0.00 0.00 42.79 2.69
1647 1683 5.412640 TGTAAGTCGTTTCAGACAAGTGAA 58.587 37.500 0.00 0.00 43.24 3.18
1648 1684 5.001237 TGTAAGTCGTTTCAGACAAGTGA 57.999 39.130 0.00 0.00 43.24 3.41
1649 1685 5.712217 TTGTAAGTCGTTTCAGACAAGTG 57.288 39.130 0.00 0.00 43.24 3.16
1650 1686 6.370718 ACTTTTGTAAGTCGTTTCAGACAAGT 59.629 34.615 0.00 0.00 40.60 3.16
1651 1687 6.682863 CACTTTTGTAAGTCGTTTCAGACAAG 59.317 38.462 0.00 0.00 42.67 3.16
1652 1688 6.369340 TCACTTTTGTAAGTCGTTTCAGACAA 59.631 34.615 0.00 0.00 42.67 3.18
1653 1689 5.870433 TCACTTTTGTAAGTCGTTTCAGACA 59.130 36.000 0.00 0.00 42.67 3.41
1654 1690 6.340537 TCACTTTTGTAAGTCGTTTCAGAC 57.659 37.500 0.00 0.00 42.67 3.51
1655 1691 6.454583 CGTTCACTTTTGTAAGTCGTTTCAGA 60.455 38.462 0.00 0.00 42.67 3.27
1656 1692 5.671140 CGTTCACTTTTGTAAGTCGTTTCAG 59.329 40.000 0.00 0.00 42.67 3.02
1657 1693 5.446206 CCGTTCACTTTTGTAAGTCGTTTCA 60.446 40.000 0.00 0.00 42.67 2.69
1658 1694 4.959757 CCGTTCACTTTTGTAAGTCGTTTC 59.040 41.667 0.00 0.00 42.67 2.78
1659 1695 4.630940 TCCGTTCACTTTTGTAAGTCGTTT 59.369 37.500 0.00 0.00 42.67 3.60
1660 1696 4.183101 TCCGTTCACTTTTGTAAGTCGTT 58.817 39.130 0.00 0.00 42.67 3.85
1661 1697 3.784338 TCCGTTCACTTTTGTAAGTCGT 58.216 40.909 0.00 0.00 42.67 4.34
1662 1698 4.377022 CCATCCGTTCACTTTTGTAAGTCG 60.377 45.833 0.00 0.00 42.67 4.18
1663 1699 4.753107 TCCATCCGTTCACTTTTGTAAGTC 59.247 41.667 0.00 0.00 42.67 3.01
1664 1700 4.710324 TCCATCCGTTCACTTTTGTAAGT 58.290 39.130 0.00 0.00 45.40 2.24
1665 1701 4.755123 ACTCCATCCGTTCACTTTTGTAAG 59.245 41.667 0.00 0.00 37.40 2.34
1666 1702 4.710324 ACTCCATCCGTTCACTTTTGTAA 58.290 39.130 0.00 0.00 0.00 2.41
1667 1703 4.345859 ACTCCATCCGTTCACTTTTGTA 57.654 40.909 0.00 0.00 0.00 2.41
1668 1704 3.208747 ACTCCATCCGTTCACTTTTGT 57.791 42.857 0.00 0.00 0.00 2.83
1669 1705 3.435671 GGTACTCCATCCGTTCACTTTTG 59.564 47.826 0.00 0.00 0.00 2.44
1670 1706 3.326880 AGGTACTCCATCCGTTCACTTTT 59.673 43.478 0.00 0.00 35.89 2.27
1671 1707 2.904434 AGGTACTCCATCCGTTCACTTT 59.096 45.455 0.00 0.00 35.89 2.66
1672 1708 2.537143 AGGTACTCCATCCGTTCACTT 58.463 47.619 0.00 0.00 35.89 3.16
1673 1709 2.233305 AGGTACTCCATCCGTTCACT 57.767 50.000 0.00 0.00 35.89 3.41
1687 1723 7.793948 ATGTTATTCCCCACTATAGAGGTAC 57.206 40.000 14.29 4.44 0.00 3.34
1688 1724 9.488762 CATATGTTATTCCCCACTATAGAGGTA 57.511 37.037 14.29 3.41 0.00 3.08
1689 1725 7.962003 ACATATGTTATTCCCCACTATAGAGGT 59.038 37.037 14.29 0.00 0.00 3.85
1690 1726 8.260818 CACATATGTTATTCCCCACTATAGAGG 58.739 40.741 5.37 8.10 0.00 3.69
1691 1727 8.816894 ACACATATGTTATTCCCCACTATAGAG 58.183 37.037 5.37 0.00 34.46 2.43
1692 1728 8.593679 CACACATATGTTATTCCCCACTATAGA 58.406 37.037 5.37 0.00 36.72 1.98
1693 1729 7.824289 CCACACATATGTTATTCCCCACTATAG 59.176 40.741 5.37 0.00 36.72 1.31
1725 1761 7.851822 ACAAGTTAATAAATGAAGTGTTGCG 57.148 32.000 0.00 0.00 0.00 4.85
1744 1780 5.305644 ACCAAGACAAGATGAGTCTACAAGT 59.694 40.000 0.00 0.00 45.11 3.16
1845 2981 5.851720 TCAGCAAATTTTCTTATGTGGCAA 58.148 33.333 0.00 0.00 0.00 4.52
1857 2993 6.041979 ACATAAGGTCCAACTCAGCAAATTTT 59.958 34.615 0.00 0.00 0.00 1.82
1929 3065 8.934825 GTTAAAGAAGCAATCATTTGGCATTAA 58.065 29.630 0.00 0.00 33.22 1.40
1960 3096 1.065126 CAAGGGGGCAAAAACCAAACA 60.065 47.619 0.00 0.00 0.00 2.83
1998 3134 2.628178 CCTATATTCACTCGGCCAGACA 59.372 50.000 2.24 0.00 0.00 3.41
2000 3136 1.618837 GCCTATATTCACTCGGCCAGA 59.381 52.381 2.24 0.00 34.75 3.86
2052 3190 3.415087 AGGCTGGGGAGGATGCAC 61.415 66.667 0.00 0.00 0.00 4.57
2383 3607 0.391597 ACGACGGTGTCAAGGTGATT 59.608 50.000 0.00 0.00 32.09 2.57
2385 3609 1.361271 GACGACGGTGTCAAGGTGA 59.639 57.895 0.00 0.00 38.75 4.02
2404 3628 2.673368 CCTAAAGGTGATCGTCTGCAAC 59.327 50.000 0.00 0.00 0.00 4.17
2680 3943 1.065551 GAACTACGGCCATTTCCATGC 59.934 52.381 2.24 0.00 0.00 4.06
2916 4187 5.471116 TGAATGAGTGTTGATCTTTGGTCAG 59.529 40.000 0.00 0.00 0.00 3.51
3005 4276 4.280436 AGAAGACAACGAGAGAGAGAGA 57.720 45.455 0.00 0.00 0.00 3.10
3006 4277 6.093495 ACATTAGAAGACAACGAGAGAGAGAG 59.907 42.308 0.00 0.00 0.00 3.20
3045 4335 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3046 4336 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3047 4337 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3048 4338 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3049 4339 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3050 4340 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3051 4341 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3052 4342 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3053 4343 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3054 4344 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3055 4345 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3056 4346 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3057 4347 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3058 4348 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3059 4349 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3060 4350 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3061 4351 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3062 4352 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3063 4353 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3064 4354 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3065 4355 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3066 4356 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
3067 4357 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
3068 4358 3.005261 CGGAGAGAGAGAGAGAGAGAGAG 59.995 56.522 0.00 0.00 0.00 3.20
3069 4359 2.959030 CGGAGAGAGAGAGAGAGAGAGA 59.041 54.545 0.00 0.00 0.00 3.10
3089 4379 1.351153 TACACACACACACACACACG 58.649 50.000 0.00 0.00 0.00 4.49
3121 4411 2.666862 TAAAGTGGTGGTGGCGCG 60.667 61.111 0.00 0.00 0.00 6.86
3122 4412 2.622962 GGTAAAGTGGTGGTGGCGC 61.623 63.158 0.00 0.00 0.00 6.53
3123 4413 1.228003 TGGTAAAGTGGTGGTGGCG 60.228 57.895 0.00 0.00 0.00 5.69
3133 4471 1.783979 TGGGGTTCATGGTGGTAAAGT 59.216 47.619 0.00 0.00 0.00 2.66
3141 4479 1.152387 TTGGGGATGGGGTTCATGGT 61.152 55.000 0.00 0.00 35.97 3.55
3285 4627 3.202906 GCCTTGAACAACACAGTGTCTA 58.797 45.455 6.67 0.00 0.00 2.59
3291 4633 0.042188 CGTCGCCTTGAACAACACAG 60.042 55.000 0.00 0.00 0.00 3.66
3378 4720 1.002069 TTTGGCCTCATCCATCACCT 58.998 50.000 3.32 0.00 35.77 4.00
3401 4750 1.129917 CCATCTGGCTCTCTGACCAT 58.870 55.000 0.00 0.00 34.82 3.55
3485 4834 0.250597 TGTCGTCCTCCAGAACGAGA 60.251 55.000 0.00 0.00 35.20 4.04
3486 4835 0.596577 TTGTCGTCCTCCAGAACGAG 59.403 55.000 0.00 0.00 35.20 4.18
3504 4853 3.879321 GCATCCACCATTTTCTCCTCCTT 60.879 47.826 0.00 0.00 0.00 3.36
3513 4862 2.365582 GACCGTAGCATCCACCATTTT 58.634 47.619 0.00 0.00 0.00 1.82
3515 4864 0.179084 CGACCGTAGCATCCACCATT 60.179 55.000 0.00 0.00 0.00 3.16
3558 4919 3.775654 CAGGACCTCCACCGCTCC 61.776 72.222 0.00 0.00 38.89 4.70
3559 4920 3.775654 CCAGGACCTCCACCGCTC 61.776 72.222 0.00 0.00 38.89 5.03
3587 4948 2.214216 TGTACGGTTGCCTGGCTCT 61.214 57.895 21.03 0.00 0.00 4.09
3597 4958 2.758979 CCTCCATGAGTAGTGTACGGTT 59.241 50.000 0.00 0.00 0.00 4.44
3608 4969 4.040047 TGTAATCATCCACCTCCATGAGT 58.960 43.478 0.00 0.00 32.53 3.41
3610 4971 4.686944 GCTTGTAATCATCCACCTCCATGA 60.687 45.833 0.00 0.00 33.55 3.07
3637 4998 0.107945 CTTGGAGTGCCAGTAGCCTC 60.108 60.000 0.00 0.00 46.91 4.70
3677 5038 6.313905 CCATCACAACAAGAAGTACATCCTAC 59.686 42.308 0.00 0.00 0.00 3.18
3687 5048 6.256321 CCTTTTGAAACCATCACAACAAGAAG 59.744 38.462 0.00 0.00 37.92 2.85
3689 5050 5.659463 CCTTTTGAAACCATCACAACAAGA 58.341 37.500 0.00 0.00 37.92 3.02
4236 5597 2.126307 CGACCTCACTGGCAGACG 60.126 66.667 23.66 11.92 40.22 4.18
4238 5599 1.112916 TTCACGACCTCACTGGCAGA 61.113 55.000 23.66 0.00 40.22 4.26
4242 5603 0.668706 CAGCTTCACGACCTCACTGG 60.669 60.000 0.00 0.00 42.93 4.00
4244 5605 1.115930 ACCAGCTTCACGACCTCACT 61.116 55.000 0.00 0.00 0.00 3.41
4260 5621 2.358125 CACCGGCGTTGATCACCA 60.358 61.111 6.01 0.00 0.00 4.17
4429 6010 4.662961 CGTCGGAGGCTGCACACA 62.663 66.667 6.86 0.00 0.00 3.72
4542 6123 3.426117 CTAATCTCGGCCCGCACGT 62.426 63.158 0.00 0.00 0.00 4.49
4993 7324 7.136772 CACTGCATCTATCCAATGTACATTTG 58.863 38.462 18.50 15.18 0.00 2.32
4994 7325 6.263842 CCACTGCATCTATCCAATGTACATTT 59.736 38.462 18.50 7.39 0.00 2.32
4995 7326 5.766670 CCACTGCATCTATCCAATGTACATT 59.233 40.000 15.47 15.47 0.00 2.71
4996 7327 5.311265 CCACTGCATCTATCCAATGTACAT 58.689 41.667 1.41 1.41 0.00 2.29
4997 7328 4.707105 CCACTGCATCTATCCAATGTACA 58.293 43.478 0.00 0.00 0.00 2.90
4998 7329 3.499918 GCCACTGCATCTATCCAATGTAC 59.500 47.826 0.00 0.00 37.47 2.90
4999 7330 3.743521 GCCACTGCATCTATCCAATGTA 58.256 45.455 0.00 0.00 37.47 2.29
5000 7331 2.579873 GCCACTGCATCTATCCAATGT 58.420 47.619 0.00 0.00 37.47 2.71
5001 7332 1.534163 CGCCACTGCATCTATCCAATG 59.466 52.381 0.00 0.00 37.32 2.82
5002 7333 1.544093 CCGCCACTGCATCTATCCAAT 60.544 52.381 0.00 0.00 37.32 3.16
5003 7334 0.179048 CCGCCACTGCATCTATCCAA 60.179 55.000 0.00 0.00 37.32 3.53
5004 7335 1.048160 TCCGCCACTGCATCTATCCA 61.048 55.000 0.00 0.00 37.32 3.41
5005 7336 0.320247 CTCCGCCACTGCATCTATCC 60.320 60.000 0.00 0.00 37.32 2.59
5006 7337 0.948141 GCTCCGCCACTGCATCTATC 60.948 60.000 0.00 0.00 37.32 2.08
5007 7338 1.070445 GCTCCGCCACTGCATCTAT 59.930 57.895 0.00 0.00 37.32 1.98
5008 7339 2.501128 GCTCCGCCACTGCATCTA 59.499 61.111 0.00 0.00 37.32 1.98
5019 7350 2.024176 TATTGAGTTTCTGGCTCCGC 57.976 50.000 0.00 0.00 32.31 5.54
5020 7351 5.201713 TCTATATTGAGTTTCTGGCTCCG 57.798 43.478 0.00 0.00 32.31 4.63
5021 7352 5.512232 CCCTCTATATTGAGTTTCTGGCTCC 60.512 48.000 12.31 0.00 32.50 4.70
5022 7353 5.512232 CCCCTCTATATTGAGTTTCTGGCTC 60.512 48.000 12.31 0.00 32.50 4.70
5023 7354 4.349342 CCCCTCTATATTGAGTTTCTGGCT 59.651 45.833 12.31 0.00 32.50 4.75
5024 7355 4.505742 CCCCCTCTATATTGAGTTTCTGGC 60.506 50.000 12.31 0.00 32.50 4.85
5025 7356 4.505742 GCCCCCTCTATATTGAGTTTCTGG 60.506 50.000 12.31 6.47 32.50 3.86
5026 7357 4.505742 GGCCCCCTCTATATTGAGTTTCTG 60.506 50.000 12.31 0.00 32.50 3.02
5027 7358 3.653352 GGCCCCCTCTATATTGAGTTTCT 59.347 47.826 12.31 0.00 32.50 2.52
5028 7359 3.394606 TGGCCCCCTCTATATTGAGTTTC 59.605 47.826 12.31 0.66 32.50 2.78
5029 7360 3.403322 TGGCCCCCTCTATATTGAGTTT 58.597 45.455 12.31 0.00 32.50 2.66
5030 7361 3.074857 TGGCCCCCTCTATATTGAGTT 57.925 47.619 12.31 0.00 32.50 3.01
5031 7362 2.815357 TGGCCCCCTCTATATTGAGT 57.185 50.000 12.31 0.00 32.50 3.41
5032 7363 3.138283 TGTTTGGCCCCCTCTATATTGAG 59.862 47.826 0.00 7.15 0.00 3.02
5033 7364 3.127250 TGTTTGGCCCCCTCTATATTGA 58.873 45.455 0.00 0.00 0.00 2.57
5034 7365 3.593442 TGTTTGGCCCCCTCTATATTG 57.407 47.619 0.00 0.00 0.00 1.90
5035 7366 3.467103 ACATGTTTGGCCCCCTCTATATT 59.533 43.478 0.00 0.00 0.00 1.28
5036 7367 3.063650 ACATGTTTGGCCCCCTCTATAT 58.936 45.455 0.00 0.00 0.00 0.86
5037 7368 2.498441 ACATGTTTGGCCCCCTCTATA 58.502 47.619 0.00 0.00 0.00 1.31
5038 7369 1.308877 ACATGTTTGGCCCCCTCTAT 58.691 50.000 0.00 0.00 0.00 1.98
5039 7370 1.080638 AACATGTTTGGCCCCCTCTA 58.919 50.000 4.92 0.00 0.00 2.43
5040 7371 1.080638 TAACATGTTTGGCCCCCTCT 58.919 50.000 17.78 0.00 0.00 3.69
5041 7372 2.159179 ATAACATGTTTGGCCCCCTC 57.841 50.000 17.78 0.00 0.00 4.30
5042 7373 3.991628 ATATAACATGTTTGGCCCCCT 57.008 42.857 17.78 0.00 0.00 4.79
5043 7374 5.542251 ACATTATATAACATGTTTGGCCCCC 59.458 40.000 17.78 0.00 28.73 5.40
5044 7375 6.664428 ACATTATATAACATGTTTGGCCCC 57.336 37.500 17.78 0.00 28.73 5.80
5045 7376 9.073475 TCTAACATTATATAACATGTTTGGCCC 57.927 33.333 17.78 0.00 40.05 5.80
5046 7377 9.893305 GTCTAACATTATATAACATGTTTGGCC 57.107 33.333 17.78 0.00 40.05 5.36
5051 7382 9.284968 GCCCTGTCTAACATTATATAACATGTT 57.715 33.333 16.68 16.68 44.18 2.71
5052 7383 7.883311 GGCCCTGTCTAACATTATATAACATGT 59.117 37.037 0.00 0.00 35.00 3.21
5053 7384 7.882791 TGGCCCTGTCTAACATTATATAACATG 59.117 37.037 0.00 0.00 0.00 3.21
5054 7385 7.984475 TGGCCCTGTCTAACATTATATAACAT 58.016 34.615 0.00 0.00 0.00 2.71
5055 7386 7.381789 TGGCCCTGTCTAACATTATATAACA 57.618 36.000 0.00 0.00 0.00 2.41
5056 7387 8.685838 TTTGGCCCTGTCTAACATTATATAAC 57.314 34.615 0.00 0.00 0.00 1.89
5057 7388 9.515226 GATTTGGCCCTGTCTAACATTATATAA 57.485 33.333 0.00 0.00 0.00 0.98
5058 7389 8.664992 TGATTTGGCCCTGTCTAACATTATATA 58.335 33.333 0.00 0.00 0.00 0.86
5059 7390 7.526041 TGATTTGGCCCTGTCTAACATTATAT 58.474 34.615 0.00 0.00 0.00 0.86
5060 7391 6.905736 TGATTTGGCCCTGTCTAACATTATA 58.094 36.000 0.00 0.00 0.00 0.98
5061 7392 5.765510 TGATTTGGCCCTGTCTAACATTAT 58.234 37.500 0.00 0.00 0.00 1.28
5062 7393 5.186256 TGATTTGGCCCTGTCTAACATTA 57.814 39.130 0.00 0.00 0.00 1.90
5063 7394 4.046286 TGATTTGGCCCTGTCTAACATT 57.954 40.909 0.00 0.00 0.00 2.71
5064 7395 3.737559 TGATTTGGCCCTGTCTAACAT 57.262 42.857 0.00 0.00 0.00 2.71
5065 7396 3.266772 AGATGATTTGGCCCTGTCTAACA 59.733 43.478 0.00 0.00 0.00 2.41
5066 7397 3.891049 AGATGATTTGGCCCTGTCTAAC 58.109 45.455 0.00 0.00 0.00 2.34
5067 7398 5.708736 TTAGATGATTTGGCCCTGTCTAA 57.291 39.130 0.00 3.33 0.00 2.10
5068 7399 5.708736 TTTAGATGATTTGGCCCTGTCTA 57.291 39.130 0.00 0.00 0.00 2.59
5069 7400 4.591321 TTTAGATGATTTGGCCCTGTCT 57.409 40.909 0.00 0.00 0.00 3.41
5070 7401 5.136105 AGATTTAGATGATTTGGCCCTGTC 58.864 41.667 0.00 0.00 0.00 3.51
5071 7402 5.134725 AGATTTAGATGATTTGGCCCTGT 57.865 39.130 0.00 0.00 0.00 4.00
5072 7403 6.774656 AGTAAGATTTAGATGATTTGGCCCTG 59.225 38.462 0.00 0.00 0.00 4.45
5073 7404 6.915786 AGTAAGATTTAGATGATTTGGCCCT 58.084 36.000 0.00 0.00 0.00 5.19
5074 7405 8.691661 TTAGTAAGATTTAGATGATTTGGCCC 57.308 34.615 0.00 0.00 0.00 5.80
5102 7433 7.523709 GCTCTTAATCCTCCATTTGTCAAACAA 60.524 37.037 0.00 0.00 36.11 2.83
5103 7434 6.071952 GCTCTTAATCCTCCATTTGTCAAACA 60.072 38.462 0.00 0.00 0.00 2.83
5104 7435 6.071952 TGCTCTTAATCCTCCATTTGTCAAAC 60.072 38.462 0.00 0.00 0.00 2.93
5105 7436 6.009589 TGCTCTTAATCCTCCATTTGTCAAA 58.990 36.000 0.00 0.00 0.00 2.69
5106 7437 5.415701 GTGCTCTTAATCCTCCATTTGTCAA 59.584 40.000 0.00 0.00 0.00 3.18
5107 7438 4.943705 GTGCTCTTAATCCTCCATTTGTCA 59.056 41.667 0.00 0.00 0.00 3.58
5108 7439 4.943705 TGTGCTCTTAATCCTCCATTTGTC 59.056 41.667 0.00 0.00 0.00 3.18
5109 7440 4.922206 TGTGCTCTTAATCCTCCATTTGT 58.078 39.130 0.00 0.00 0.00 2.83
5110 7441 7.756395 ATATGTGCTCTTAATCCTCCATTTG 57.244 36.000 0.00 0.00 0.00 2.32
5111 7442 8.664079 ACTATATGTGCTCTTAATCCTCCATTT 58.336 33.333 0.00 0.00 0.00 2.32
5112 7443 8.212259 ACTATATGTGCTCTTAATCCTCCATT 57.788 34.615 0.00 0.00 0.00 3.16
5113 7444 7.805083 ACTATATGTGCTCTTAATCCTCCAT 57.195 36.000 0.00 0.00 0.00 3.41
5114 7445 7.071196 ACAACTATATGTGCTCTTAATCCTCCA 59.929 37.037 0.00 0.00 30.82 3.86
5115 7446 7.445945 ACAACTATATGTGCTCTTAATCCTCC 58.554 38.462 0.00 0.00 30.82 4.30
5332 7663 0.319728 CATCTATCCAGTGGCGGAGG 59.680 60.000 3.51 0.25 38.83 4.30
5333 7664 0.319728 CCATCTATCCAGTGGCGGAG 59.680 60.000 3.51 1.20 38.83 4.63
5334 7665 0.105709 TCCATCTATCCAGTGGCGGA 60.106 55.000 3.51 2.60 40.07 5.54
5335 7666 0.034059 GTCCATCTATCCAGTGGCGG 59.966 60.000 3.51 0.00 33.01 6.13
5336 7667 0.034059 GGTCCATCTATCCAGTGGCG 59.966 60.000 3.51 0.00 33.01 5.69
5337 7668 1.131638 TGGTCCATCTATCCAGTGGC 58.868 55.000 3.51 0.00 33.01 5.01
5338 7669 2.118679 TGTGGTCCATCTATCCAGTGG 58.881 52.381 1.40 1.40 31.54 4.00
5339 7670 4.428294 AATGTGGTCCATCTATCCAGTG 57.572 45.455 0.00 0.00 31.75 3.66
5340 7671 5.440610 GAAAATGTGGTCCATCTATCCAGT 58.559 41.667 0.00 0.00 31.75 4.00
5341 7672 4.823989 GGAAAATGTGGTCCATCTATCCAG 59.176 45.833 0.00 0.00 33.18 3.86
5374 7705 4.998672 AGGCGCAGTTACACATAAACTTTA 59.001 37.500 10.83 0.00 34.99 1.85
6845 11014 6.756074 GTGGTTCTTCACATCAACATTTGAAA 59.244 34.615 0.00 0.00 43.95 2.69
7061 11230 0.396435 AGGTGCTCGGAATGTGACAA 59.604 50.000 0.00 0.00 0.00 3.18
7103 11272 8.652810 GGAATTTCATCCCATTGTTGAAATAG 57.347 34.615 14.59 0.00 45.82 1.73
7160 11330 4.940046 TGCTTGAAAATTTCAGCAAAACCA 59.060 33.333 21.48 7.29 41.38 3.67
7161 11331 5.482686 TGCTTGAAAATTTCAGCAAAACC 57.517 34.783 21.48 5.45 41.38 3.27
7219 11389 0.543883 TGCTGCTCTCCTTGAGGACT 60.544 55.000 0.00 0.00 42.87 3.85
7335 11509 8.372459 ACAACAGTAATCCAGTACTTGTGATAA 58.628 33.333 0.00 0.00 31.78 1.75
7526 11816 8.747538 AAAGTTTGGTGTAAGTTACTCAGAAT 57.252 30.769 14.00 5.02 0.00 2.40
7527 11817 8.570068 AAAAGTTTGGTGTAAGTTACTCAGAA 57.430 30.769 14.00 6.47 0.00 3.02
7529 11819 8.557029 CCTAAAAGTTTGGTGTAAGTTACTCAG 58.443 37.037 14.00 1.63 0.00 3.35
7530 11820 8.266473 TCCTAAAAGTTTGGTGTAAGTTACTCA 58.734 33.333 14.00 9.45 0.00 3.41
7531 11821 8.667076 TCCTAAAAGTTTGGTGTAAGTTACTC 57.333 34.615 14.00 10.18 0.00 2.59
7532 11822 9.281371 GATCCTAAAAGTTTGGTGTAAGTTACT 57.719 33.333 14.00 0.00 0.00 2.24
7533 11823 8.509690 GGATCCTAAAAGTTTGGTGTAAGTTAC 58.490 37.037 3.84 6.06 0.00 2.50
7534 11824 8.219178 TGGATCCTAAAAGTTTGGTGTAAGTTA 58.781 33.333 14.23 0.00 0.00 2.24
7535 11825 7.064229 TGGATCCTAAAAGTTTGGTGTAAGTT 58.936 34.615 14.23 0.00 0.00 2.66
7536 11826 6.607019 TGGATCCTAAAAGTTTGGTGTAAGT 58.393 36.000 14.23 0.00 0.00 2.24
7537 11827 6.940298 TCTGGATCCTAAAAGTTTGGTGTAAG 59.060 38.462 14.23 0.00 0.00 2.34
7540 11830 5.319043 TCTGGATCCTAAAAGTTTGGTGT 57.681 39.130 14.23 0.00 0.00 4.16
7573 11863 5.363292 CCCTCTACCCTAGTTCCTTTTCTAC 59.637 48.000 0.00 0.00 0.00 2.59
7589 11879 3.181464 GCTCCTGTGTATTTCCCTCTACC 60.181 52.174 0.00 0.00 0.00 3.18
7722 12012 7.052248 TCGTAGGTCATACTGTATTCTCTTCA 58.948 38.462 0.00 0.00 31.68 3.02
7795 12088 9.638300 GCAGTTTATCTACGAATGTATTTTCAG 57.362 33.333 0.00 0.00 0.00 3.02
7796 12089 9.378551 AGCAGTTTATCTACGAATGTATTTTCA 57.621 29.630 0.00 0.00 0.00 2.69
7797 12090 9.638300 CAGCAGTTTATCTACGAATGTATTTTC 57.362 33.333 0.00 0.00 0.00 2.29
7798 12091 9.378551 TCAGCAGTTTATCTACGAATGTATTTT 57.621 29.630 0.00 0.00 0.00 1.82
7800 12093 8.942338 TTCAGCAGTTTATCTACGAATGTATT 57.058 30.769 0.00 0.00 0.00 1.89
7802 12095 8.248253 TCTTTCAGCAGTTTATCTACGAATGTA 58.752 33.333 0.00 0.00 0.00 2.29
7803 12096 7.097192 TCTTTCAGCAGTTTATCTACGAATGT 58.903 34.615 0.00 0.00 0.00 2.71
7804 12097 7.525688 TCTTTCAGCAGTTTATCTACGAATG 57.474 36.000 0.00 0.00 0.00 2.67
7805 12098 8.443937 GTTTCTTTCAGCAGTTTATCTACGAAT 58.556 33.333 0.00 0.00 0.00 3.34
7809 12104 8.507249 ACATGTTTCTTTCAGCAGTTTATCTAC 58.493 33.333 0.00 0.00 0.00 2.59
7826 12121 2.631160 TGAACGGGTGACATGTTTCT 57.369 45.000 0.00 0.00 31.58 2.52
7844 12139 0.734889 GAGCGGGATGTGGACATTTG 59.265 55.000 0.00 0.00 36.57 2.32
7920 12216 6.490040 CAGAAAGGTTTTAACATCTCCAGGAA 59.510 38.462 0.00 0.00 0.00 3.36
7938 12234 0.529378 GCTGCAATCCACCAGAAAGG 59.471 55.000 0.00 0.00 45.67 3.11
7939 12235 1.471684 GAGCTGCAATCCACCAGAAAG 59.528 52.381 1.02 0.00 0.00 2.62
7940 12236 1.538047 GAGCTGCAATCCACCAGAAA 58.462 50.000 1.02 0.00 0.00 2.52
7942 12238 1.300963 GGAGCTGCAATCCACCAGA 59.699 57.895 11.83 0.00 36.79 3.86
7943 12239 1.001764 TGGAGCTGCAATCCACCAG 60.002 57.895 14.79 0.00 41.96 4.00
7947 12243 0.961019 GTTTGTGGAGCTGCAATCCA 59.039 50.000 10.44 14.79 44.63 3.41
7948 12244 0.961019 TGTTTGTGGAGCTGCAATCC 59.039 50.000 10.44 10.14 37.35 3.01
7949 12245 1.336240 GGTGTTTGTGGAGCTGCAATC 60.336 52.381 10.44 0.00 0.00 2.67
7950 12246 0.675633 GGTGTTTGTGGAGCTGCAAT 59.324 50.000 10.44 0.00 0.00 3.56
7951 12247 0.395586 AGGTGTTTGTGGAGCTGCAA 60.396 50.000 10.44 0.00 0.00 4.08
7952 12248 0.395586 AAGGTGTTTGTGGAGCTGCA 60.396 50.000 2.72 2.72 0.00 4.41
7953 12249 0.746659 AAAGGTGTTTGTGGAGCTGC 59.253 50.000 0.00 0.00 0.00 5.25
7954 12250 2.033801 CAGAAAGGTGTTTGTGGAGCTG 59.966 50.000 0.00 0.00 34.10 4.24
7955 12251 2.301346 CAGAAAGGTGTTTGTGGAGCT 58.699 47.619 0.00 0.00 34.10 4.09
7956 12252 2.781945 CAGAAAGGTGTTTGTGGAGC 57.218 50.000 0.00 0.00 34.10 4.70
8006 12302 9.649167 GTACTAGAACCAATGTTACACAACTAT 57.351 33.333 0.00 0.00 33.97 2.12
8008 12304 7.502696 TGTACTAGAACCAATGTTACACAACT 58.497 34.615 0.00 0.00 33.97 3.16
8011 12307 7.762615 GCTATGTACTAGAACCAATGTTACACA 59.237 37.037 0.00 0.00 33.97 3.72
8012 12308 7.980099 AGCTATGTACTAGAACCAATGTTACAC 59.020 37.037 0.00 0.00 33.97 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.