Multiple sequence alignment - TraesCS5D01G100800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G100800 chr5D 100.000 6562 0 0 1 6562 113647733 113654294 0.000000e+00 12118.0
1 TraesCS5D01G100800 chr5B 95.054 6591 224 54 1 6562 124281796 124288313 0.000000e+00 10272.0
2 TraesCS5D01G100800 chr5A 96.199 5867 151 39 715 6562 118757329 118763142 0.000000e+00 9533.0
3 TraesCS5D01G100800 chr5A 90.708 678 46 14 1 673 118756663 118757328 0.000000e+00 887.0
4 TraesCS5D01G100800 chr7A 86.577 596 72 4 5076 5668 132400879 132401469 0.000000e+00 651.0
5 TraesCS5D01G100800 chr7A 95.714 70 3 0 6032 6101 504220489 504220420 5.380000e-21 113.0
6 TraesCS5D01G100800 chr3B 86.923 520 34 19 1712 2230 724392968 724392482 2.670000e-153 553.0
7 TraesCS5D01G100800 chr7D 88.783 419 46 1 5076 5493 412180945 412181363 4.540000e-141 512.0
8 TraesCS5D01G100800 chr7D 85.859 297 32 4 5154 5450 563542248 563542534 2.300000e-79 307.0
9 TraesCS5D01G100800 chr7D 85.859 297 32 4 5154 5450 621148789 621148503 2.300000e-79 307.0
10 TraesCS5D01G100800 chr7D 85.859 297 31 5 5154 5450 601941216 601940931 8.270000e-79 305.0
11 TraesCS5D01G100800 chr2D 86.532 297 30 4 5154 5450 103150081 103150367 1.060000e-82 318.0
12 TraesCS5D01G100800 chr4B 85.859 297 42 0 5154 5450 646232674 646232378 3.820000e-82 316.0
13 TraesCS5D01G100800 chr1D 92.208 77 5 1 6025 6101 164421628 164421703 2.500000e-19 108.0
14 TraesCS5D01G100800 chr1D 87.342 79 5 2 6028 6101 372835832 372835754 1.170000e-12 86.1
15 TraesCS5D01G100800 chr1D 85.714 84 6 3 6027 6105 372835760 372835842 4.220000e-12 84.2
16 TraesCS5D01G100800 chr1D 86.250 80 5 2 6027 6101 249030325 249030403 1.520000e-11 82.4
17 TraesCS5D01G100800 chr1A 92.208 77 5 1 6025 6101 235687556 235687481 2.500000e-19 108.0
18 TraesCS5D01G100800 chr1A 100.000 28 0 0 192 219 470398029 470398002 1.200000e-02 52.8
19 TraesCS5D01G100800 chr1B 88.000 75 7 1 6027 6101 378835237 378835165 3.260000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G100800 chr5D 113647733 113654294 6561 False 12118 12118 100.0000 1 6562 1 chr5D.!!$F1 6561
1 TraesCS5D01G100800 chr5B 124281796 124288313 6517 False 10272 10272 95.0540 1 6562 1 chr5B.!!$F1 6561
2 TraesCS5D01G100800 chr5A 118756663 118763142 6479 False 5210 9533 93.4535 1 6562 2 chr5A.!!$F1 6561
3 TraesCS5D01G100800 chr7A 132400879 132401469 590 False 651 651 86.5770 5076 5668 1 chr7A.!!$F1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 718 0.096454 CACTTAACGGCGCTTAAGGC 59.904 55.000 28.39 6.03 37.84 4.35 F
1650 1664 1.136984 GTTCGCTGTCGACGAGGAT 59.863 57.895 11.62 0.00 45.43 3.24 F
1698 1712 0.625683 ATGAAGGGGCTGATGGAGGT 60.626 55.000 0.00 0.00 0.00 3.85 F
3627 3652 2.287547 GCATGAAGACGTGAAAAAGGCA 60.288 45.455 0.00 0.00 35.25 4.75 F
3657 3682 0.032952 TACTCGTTGGTGCACCTCAC 59.967 55.000 34.75 27.80 44.90 3.51 F
4030 4058 3.122948 CGTCGGTTCAGTTGTAATCAAGG 59.877 47.826 0.00 0.00 33.97 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 1691 0.250209 CTCCATCAGCCCCTTCATCG 60.250 60.000 0.00 0.0 0.00 3.84 R
3627 3652 1.806542 CCAACGAGTAGCAGCAACAAT 59.193 47.619 0.00 0.0 0.00 2.71 R
3657 3682 1.821332 GCCATCTCCAAGCTTCCGG 60.821 63.158 0.00 0.0 0.00 5.14 R
4538 4566 0.248843 GTGAGAGAAGTGCTGGAGGG 59.751 60.000 0.00 0.0 0.00 4.30 R
4991 5021 5.066505 CCTAATGGTTGTGTAAGAATGAGGC 59.933 44.000 0.00 0.0 0.00 4.70 R
6002 6040 3.398318 TTACTAGGACAGGCATCCTCA 57.602 47.619 13.12 0.0 46.92 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 192 9.627395 TTTTTCTTCAATTTTCGTTCTGTACAA 57.373 25.926 0.00 0.00 0.00 2.41
191 193 8.835467 TTTCTTCAATTTTCGTTCTGTACAAG 57.165 30.769 0.00 0.00 0.00 3.16
316 321 8.531622 AAAAGCAAAATTCCAAAACAAAAAGG 57.468 26.923 0.00 0.00 0.00 3.11
318 323 5.184671 AGCAAAATTCCAAAACAAAAAGGCA 59.815 32.000 0.00 0.00 0.00 4.75
413 418 1.466167 GCTGCAGGCATATATCCAACG 59.534 52.381 17.12 0.00 41.35 4.10
436 441 6.157211 CGACATCTTTTGTACACCTTCTACT 58.843 40.000 0.00 0.00 39.18 2.57
542 550 9.912634 AAACATTTTCCTGTACATGTTGAATAG 57.087 29.630 2.30 0.00 39.31 1.73
573 581 6.372185 CCAAATGCATGTTTACCATTTTGTG 58.628 36.000 0.00 0.00 37.14 3.33
574 582 6.204301 CCAAATGCATGTTTACCATTTTGTGA 59.796 34.615 0.00 0.00 37.14 3.58
575 583 7.255035 CCAAATGCATGTTTACCATTTTGTGAA 60.255 33.333 0.00 0.00 37.14 3.18
709 718 0.096454 CACTTAACGGCGCTTAAGGC 59.904 55.000 28.39 6.03 37.84 4.35
958 969 3.110705 CTCATTTCCCTCCCTTCTCTGA 58.889 50.000 0.00 0.00 0.00 3.27
1058 1072 1.836802 AGAGGTACGTTCTCTCACCC 58.163 55.000 13.27 0.80 36.99 4.61
1064 1078 2.990479 GTTCTCTCACCCCCGCAT 59.010 61.111 0.00 0.00 0.00 4.73
1146 1160 4.004314 GGAAGCTTCTAGAAAGGGTTCAC 58.996 47.826 25.57 16.75 37.75 3.18
1300 1314 3.237741 GGGCCCTGGAGATCCGAG 61.238 72.222 17.04 0.00 39.43 4.63
1319 1333 9.314321 GATCCGAGATTTCTTAGTTATTTCACA 57.686 33.333 0.00 0.00 0.00 3.58
1462 1476 3.134804 CCCACCTCCACGAGATCTAATTT 59.865 47.826 0.00 0.00 0.00 1.82
1463 1477 4.372656 CCACCTCCACGAGATCTAATTTC 58.627 47.826 0.00 0.00 0.00 2.17
1464 1478 4.100189 CCACCTCCACGAGATCTAATTTCT 59.900 45.833 0.00 0.00 0.00 2.52
1514 1528 1.933181 TCTGATATCGGTTGCTTTGCG 59.067 47.619 11.35 0.00 0.00 4.85
1617 1631 2.265739 GTGGACGAGCTCATGCCA 59.734 61.111 15.40 14.26 40.80 4.92
1650 1664 1.136984 GTTCGCTGTCGACGAGGAT 59.863 57.895 11.62 0.00 45.43 3.24
1698 1712 0.625683 ATGAAGGGGCTGATGGAGGT 60.626 55.000 0.00 0.00 0.00 3.85
1892 1912 6.375174 TGGCTAATTATTTGCTGATATCGCAT 59.625 34.615 18.41 10.35 37.22 4.73
1944 1964 8.487028 ACTTGAAGGGAGATACTTTAGGTATTG 58.513 37.037 0.00 0.00 40.82 1.90
1945 1965 7.374975 TGAAGGGAGATACTTTAGGTATTGG 57.625 40.000 0.00 0.00 40.82 3.16
1946 1966 5.827326 AGGGAGATACTTTAGGTATTGGC 57.173 43.478 0.00 0.00 40.82 4.52
1947 1967 5.224441 AGGGAGATACTTTAGGTATTGGCA 58.776 41.667 0.00 0.00 40.82 4.92
1948 1968 5.852250 AGGGAGATACTTTAGGTATTGGCAT 59.148 40.000 0.00 0.00 40.82 4.40
1949 1969 5.940470 GGGAGATACTTTAGGTATTGGCATG 59.060 44.000 0.00 0.00 40.82 4.06
1950 1970 6.239887 GGGAGATACTTTAGGTATTGGCATGA 60.240 42.308 0.00 0.00 40.82 3.07
1951 1971 7.398024 GGAGATACTTTAGGTATTGGCATGAT 58.602 38.462 0.00 0.00 40.82 2.45
1952 1972 8.540388 GGAGATACTTTAGGTATTGGCATGATA 58.460 37.037 0.00 0.00 40.82 2.15
1953 1973 9.372369 GAGATACTTTAGGTATTGGCATGATAC 57.628 37.037 0.00 1.46 40.82 2.24
1954 1974 9.105844 AGATACTTTAGGTATTGGCATGATACT 57.894 33.333 0.00 0.00 40.82 2.12
1955 1975 9.726438 GATACTTTAGGTATTGGCATGATACTT 57.274 33.333 0.00 4.69 40.82 2.24
1958 1978 9.561069 ACTTTAGGTATTGGCATGATACTTTAG 57.439 33.333 0.00 5.86 32.02 1.85
2056 2076 3.191162 TCCGCTTTCATGGATTTTGTCAG 59.809 43.478 0.00 0.00 0.00 3.51
2121 2142 4.695217 TTCTTGCGAAGACTTGTTTTGT 57.305 36.364 0.00 0.00 37.23 2.83
2131 2153 6.794158 CGAAGACTTGTTTTGTTGATCTCATC 59.206 38.462 0.00 0.00 0.00 2.92
2516 2538 8.701895 TGTAACAGACCTCCCTATATTAGTTTG 58.298 37.037 0.00 0.00 0.00 2.93
2523 2545 8.808240 ACCTCCCTATATTAGTTTGGATTGTA 57.192 34.615 0.00 0.00 0.00 2.41
2591 2613 7.538575 AGTGAAATGCAATATTTGTGAGTACC 58.461 34.615 0.00 0.00 0.00 3.34
2680 2702 5.012561 AGTCTTTATGCCTCTCTTTGAGTGT 59.987 40.000 0.00 0.00 41.11 3.55
3027 3049 4.024893 TGCTTTGAGTAACTCTCTTTTGCG 60.025 41.667 0.00 0.00 43.13 4.85
3208 3233 8.138074 TGAAGAGTGATATTCAGTAATCTTCCG 58.862 37.037 0.00 0.00 32.01 4.30
3444 3469 6.439636 TGATCTTATTTCCATGGACCCTAG 57.560 41.667 15.91 10.14 0.00 3.02
3627 3652 2.287547 GCATGAAGACGTGAAAAAGGCA 60.288 45.455 0.00 0.00 35.25 4.75
3657 3682 0.032952 TACTCGTTGGTGCACCTCAC 59.967 55.000 34.75 27.80 44.90 3.51
3723 3748 5.415701 AGTTTGAATGTCTTGCACCGAATAT 59.584 36.000 0.00 0.00 0.00 1.28
4030 4058 3.122948 CGTCGGTTCAGTTGTAATCAAGG 59.877 47.826 0.00 0.00 33.97 3.61
4099 4127 6.882610 ATAACAGTTTCATTGACAGCAGAA 57.117 33.333 0.00 0.00 0.00 3.02
4140 4168 5.835819 TGGTAAAAACATTCCACTCCAATCA 59.164 36.000 0.00 0.00 0.00 2.57
4178 4206 5.978919 TCATGCAGAAAACACTTCATTTGAC 59.021 36.000 0.00 0.00 0.00 3.18
4277 4305 6.486320 TCTGTGCAATAGATGAGTTTGACAAA 59.514 34.615 0.00 0.00 0.00 2.83
4461 4489 5.540400 ATGGCTTGGAAAATATGGTGATG 57.460 39.130 0.00 0.00 0.00 3.07
4517 4545 4.468153 GGAAGGTATGATATGAGGAGGACC 59.532 50.000 0.00 0.00 0.00 4.46
4538 4566 4.133078 CCCCAGCTGAGAACATAAATCTC 58.867 47.826 17.39 0.00 42.94 2.75
4991 5021 0.883833 AGGAAGCCAAGTCAAATGCG 59.116 50.000 0.00 0.00 0.00 4.73
5424 5459 1.952296 GGGCCATGATTGCTAACAGAG 59.048 52.381 4.39 0.00 0.00 3.35
5663 5698 6.382869 AACAAGATTGAAAGACTTCAGTGG 57.617 37.500 0.00 0.00 42.48 4.00
5669 5704 2.364324 TGAAAGACTTCAGTGGTAGCGT 59.636 45.455 0.00 0.00 36.62 5.07
5933 5971 8.558700 CATTTCTGGTAGGAATTTTGTTTTTGG 58.441 33.333 0.00 0.00 0.00 3.28
6147 6189 4.936891 ACTTGCTCAGGACAAAATTGTTC 58.063 39.130 0.00 0.00 42.43 3.18
6195 6237 3.990092 AGACGAACAGTTTGTGCAGATA 58.010 40.909 11.20 0.00 0.00 1.98
6196 6238 4.569943 AGACGAACAGTTTGTGCAGATAT 58.430 39.130 11.20 0.00 0.00 1.63
6337 6380 4.463879 CTGCCCCGGTCTCAGCAG 62.464 72.222 0.00 6.98 45.92 4.24
6348 6391 0.829182 TCTCAGCAGCACCAGAGACA 60.829 55.000 0.00 0.00 32.57 3.41
6442 6485 6.240894 TGAAACCTGAGCTTTGAGACATATT 58.759 36.000 0.00 0.00 0.00 1.28
6472 6515 3.518303 AGAACCGTTAAGGCTACTGGAAT 59.482 43.478 0.00 0.00 46.52 3.01
6478 6521 5.007724 CCGTTAAGGCTACTGGAATTCAATC 59.992 44.000 7.93 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
378 383 4.473520 AGCGCCTCCCCGATGTTG 62.474 66.667 2.29 0.00 0.00 3.33
413 418 7.964604 AAGTAGAAGGTGTACAAAAGATGTC 57.035 36.000 0.00 0.00 42.70 3.06
542 550 6.402222 TGGTAAACATGCATTTGGGAAATAC 58.598 36.000 0.00 0.00 0.00 1.89
778 787 3.805422 CGAACAGCCCATTACGCTAATTA 59.195 43.478 0.00 0.00 33.91 1.40
806 815 4.329545 GGGCCGGTTGACTGAGCA 62.330 66.667 1.90 0.00 0.00 4.26
958 969 2.603776 AGGAGGAAAGACGCGGGT 60.604 61.111 12.47 4.12 0.00 5.28
1319 1333 7.696992 ATACTTGGATTAACAACAAATCGGT 57.303 32.000 0.00 0.00 34.74 4.69
1462 1476 3.686016 GCAACCATACCTCTGGAAAAGA 58.314 45.455 0.00 0.00 39.73 2.52
1463 1477 2.420022 CGCAACCATACCTCTGGAAAAG 59.580 50.000 0.00 0.00 39.73 2.27
1464 1478 2.432444 CGCAACCATACCTCTGGAAAA 58.568 47.619 0.00 0.00 39.73 2.29
1514 1528 0.443869 CACATCCTTGTACTGCGCAC 59.556 55.000 5.66 0.00 33.76 5.34
1650 1664 2.101415 CTGCGTCATCAAGATGTCCCTA 59.899 50.000 9.66 0.00 39.72 3.53
1677 1691 0.250209 CTCCATCAGCCCCTTCATCG 60.250 60.000 0.00 0.00 0.00 3.84
1944 1964 6.595716 CCAGCTAATACCTAAAGTATCATGCC 59.404 42.308 0.00 0.00 40.98 4.40
1945 1965 6.092807 GCCAGCTAATACCTAAAGTATCATGC 59.907 42.308 0.00 0.00 40.98 4.06
1946 1966 7.390027 AGCCAGCTAATACCTAAAGTATCATG 58.610 38.462 0.00 0.00 40.98 3.07
1947 1967 7.560796 AGCCAGCTAATACCTAAAGTATCAT 57.439 36.000 0.00 0.00 40.98 2.45
1948 1968 6.996180 AGCCAGCTAATACCTAAAGTATCA 57.004 37.500 0.00 0.00 40.98 2.15
1949 1969 7.173390 CCAAAGCCAGCTAATACCTAAAGTATC 59.827 40.741 0.00 0.00 40.98 2.24
1950 1970 6.998673 CCAAAGCCAGCTAATACCTAAAGTAT 59.001 38.462 0.00 0.00 43.85 2.12
1951 1971 6.069847 ACCAAAGCCAGCTAATACCTAAAGTA 60.070 38.462 0.00 0.00 34.76 2.24
1952 1972 5.193679 CCAAAGCCAGCTAATACCTAAAGT 58.806 41.667 0.00 0.00 0.00 2.66
1953 1973 5.193679 ACCAAAGCCAGCTAATACCTAAAG 58.806 41.667 0.00 0.00 0.00 1.85
1954 1974 5.187621 ACCAAAGCCAGCTAATACCTAAA 57.812 39.130 0.00 0.00 0.00 1.85
1955 1975 4.855298 ACCAAAGCCAGCTAATACCTAA 57.145 40.909 0.00 0.00 0.00 2.69
1956 1976 5.213519 TCTACCAAAGCCAGCTAATACCTA 58.786 41.667 0.00 0.00 0.00 3.08
1957 1977 4.037927 TCTACCAAAGCCAGCTAATACCT 58.962 43.478 0.00 0.00 0.00 3.08
1958 1978 4.417426 TCTACCAAAGCCAGCTAATACC 57.583 45.455 0.00 0.00 0.00 2.73
1965 1985 1.135286 GCACATTCTACCAAAGCCAGC 60.135 52.381 0.00 0.00 0.00 4.85
2121 2142 5.520376 TCTACAAGCATCGATGAGATCAA 57.480 39.130 29.20 7.94 37.52 2.57
2131 2153 7.148641 ACTGAATTAGGTATCTACAAGCATCG 58.851 38.462 0.00 0.00 0.00 3.84
2441 2463 7.540055 CAGAAACAAGAACCTAAATCAAGATGC 59.460 37.037 0.00 0.00 0.00 3.91
2516 2538 7.428826 CAAAATTCTCCTGGCTAATACAATCC 58.571 38.462 0.00 0.00 0.00 3.01
2523 2545 7.607615 AATATGCAAAATTCTCCTGGCTAAT 57.392 32.000 0.00 0.00 0.00 1.73
2527 2549 9.933723 ATAAATAATATGCAAAATTCTCCTGGC 57.066 29.630 0.00 0.00 0.00 4.85
2591 2613 2.095212 TCAGCACTAGTTGTACAGCTCG 60.095 50.000 16.12 12.37 0.00 5.03
2827 2849 8.836413 GGGAGTATGAATATGATTTCGTTTTGA 58.164 33.333 0.00 0.00 0.00 2.69
2833 2855 6.940739 AGAGGGGAGTATGAATATGATTTCG 58.059 40.000 0.00 0.00 0.00 3.46
2851 2873 3.222603 ACAGTTTTGCAGTTAAGAGGGG 58.777 45.455 0.00 0.00 0.00 4.79
3027 3049 9.113838 CAGATATGGTGATTTATATGGCCTTAC 57.886 37.037 3.32 0.00 0.00 2.34
3188 3213 8.012241 GCATTTCGGAAGATTACTGAATATCAC 58.988 37.037 0.00 0.00 41.60 3.06
3444 3469 2.024414 CACAGGCAAGGTAAATAGGGC 58.976 52.381 0.00 0.00 0.00 5.19
3627 3652 1.806542 CCAACGAGTAGCAGCAACAAT 59.193 47.619 0.00 0.00 0.00 2.71
3657 3682 1.821332 GCCATCTCCAAGCTTCCGG 60.821 63.158 0.00 0.00 0.00 5.14
4030 4058 4.773323 ATCAGAAACTAAAACAGGCAGC 57.227 40.909 0.00 0.00 0.00 5.25
4099 4127 8.664798 GTTTTTACCAACAAAGCAGAAATCTTT 58.335 29.630 0.00 0.00 34.37 2.52
4277 4305 3.242867 TGTCCTGTCAGACTCTTCCATT 58.757 45.455 0.00 0.00 37.66 3.16
4461 4489 6.670077 TTGAAAACAATTGCCTTTGTTACC 57.330 33.333 5.05 9.14 46.33 2.85
4517 4545 4.133078 GGAGATTTATGTTCTCAGCTGGG 58.867 47.826 15.13 11.57 41.16 4.45
4538 4566 0.248843 GTGAGAGAAGTGCTGGAGGG 59.751 60.000 0.00 0.00 0.00 4.30
4733 4763 7.572523 ACACTGATTTCAAGATTCAACAAGA 57.427 32.000 0.00 0.00 0.00 3.02
4991 5021 5.066505 CCTAATGGTTGTGTAAGAATGAGGC 59.933 44.000 0.00 0.00 0.00 4.70
5424 5459 5.182760 ACAAACATTCAAGCAGGAGAGAATC 59.817 40.000 0.00 0.00 0.00 2.52
5638 5673 7.721399 ACCACTGAAGTCTTTCAATCTTGTTAT 59.279 33.333 0.00 0.00 42.48 1.89
5663 5698 7.014092 ACTAGACTAGTACATTTCACGCTAC 57.986 40.000 13.63 0.00 37.23 3.58
5669 5704 8.047911 ACAGCTCTACTAGACTAGTACATTTCA 58.952 37.037 16.83 0.00 40.14 2.69
5981 6019 8.517878 TCCTCATTTCTTAGAAAAAGAAGCATG 58.482 33.333 11.63 3.27 37.54 4.06
6002 6040 3.398318 TTACTAGGACAGGCATCCTCA 57.602 47.619 13.12 0.00 46.92 3.86
6123 6165 3.319122 ACAATTTTGTCCTGAGCAAGTCC 59.681 43.478 0.00 0.00 36.50 3.85
6208 6250 6.128445 CGTTCAGCACTGTCTAAGAATTTCAT 60.128 38.462 0.00 0.00 0.00 2.57
6337 6380 1.346068 AGGTCTCTTTGTCTCTGGTGC 59.654 52.381 0.00 0.00 0.00 5.01
6348 6391 2.371510 AGCTGAGCTTTCAGGTCTCTTT 59.628 45.455 0.00 0.00 44.04 2.52
6377 6420 9.717942 GCACTCATCTCTTTCTACCAAATATAT 57.282 33.333 0.00 0.00 0.00 0.86
6378 6421 8.928448 AGCACTCATCTCTTTCTACCAAATATA 58.072 33.333 0.00 0.00 0.00 0.86
6401 6444 3.483808 TTCAGGTAACATGTGTGAGCA 57.516 42.857 0.00 0.00 41.41 4.26
6472 6515 0.887247 CACCGGCATGTTGGATTGAA 59.113 50.000 0.00 0.00 0.00 2.69
6478 6521 2.672651 TGCTCACCGGCATGTTGG 60.673 61.111 0.00 4.07 37.29 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.