Multiple sequence alignment - TraesCS5D01G100100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G100100 chr5D 100.000 2663 0 0 1 2663 112355630 112358292 0.000000e+00 4918.0
1 TraesCS5D01G100100 chr5D 97.276 257 6 1 2294 2550 65758579 65758324 4.070000e-118 435.0
2 TraesCS5D01G100100 chr5B 91.702 2109 103 37 1 2074 121531427 121533498 0.000000e+00 2859.0
3 TraesCS5D01G100100 chr5A 93.848 1463 32 19 679 2134 115248578 115249989 0.000000e+00 2150.0
4 TraesCS5D01G100100 chr5A 91.523 696 39 9 1 685 115247861 115248547 0.000000e+00 941.0
5 TraesCS5D01G100100 chr4D 94.118 306 17 1 2247 2551 30506369 30506674 5.190000e-127 464.0
6 TraesCS5D01G100100 chr4D 96.538 260 8 1 2294 2553 124891281 124891539 1.890000e-116 429.0
7 TraesCS5D01G100100 chr4D 96.875 256 7 1 2293 2548 440034779 440034525 6.810000e-116 427.0
8 TraesCS5D01G100100 chr4D 93.210 162 10 1 2144 2304 504259618 504259457 1.230000e-58 237.0
9 TraesCS5D01G100100 chr4D 93.125 160 10 1 2146 2304 7467281 7467440 1.590000e-57 233.0
10 TraesCS5D01G100100 chr4D 93.082 159 10 1 2144 2301 154797089 154797247 5.730000e-57 231.0
11 TraesCS5D01G100100 chr4D 91.124 169 14 1 2137 2304 365202101 365202269 7.420000e-56 228.0
12 TraesCS5D01G100100 chr3D 99.587 242 1 0 2303 2544 327381957 327381716 2.430000e-120 442.0
13 TraesCS5D01G100100 chr3D 98.785 247 3 0 2303 2549 129016584 129016830 8.750000e-120 440.0
14 TraesCS5D01G100100 chr3D 98.785 247 3 0 2297 2543 496111234 496111480 8.750000e-120 440.0
15 TraesCS5D01G100100 chr3D 98.785 247 2 1 2303 2548 611242035 611242281 3.150000e-119 438.0
16 TraesCS5D01G100100 chr2D 97.628 253 6 0 2297 2549 459810947 459810695 4.070000e-118 435.0
17 TraesCS5D01G100100 chr2D 93.789 161 9 1 2145 2304 36803223 36803063 9.530000e-60 241.0
18 TraesCS5D01G100100 chr2D 93.750 160 9 1 2146 2304 499699211 499699370 3.430000e-59 239.0
19 TraesCS5D01G100100 chr2D 93.168 161 10 1 2145 2304 557094534 557094694 4.430000e-58 235.0
20 TraesCS5D01G100100 chr6B 92.073 164 12 1 2142 2304 682836537 682836374 2.060000e-56 230.0
21 TraesCS5D01G100100 chr4A 89.535 172 16 2 2142 2311 435607161 435607332 1.610000e-52 217.0
22 TraesCS5D01G100100 chr4B 96.203 79 3 0 2541 2619 166891107 166891029 2.150000e-26 130.0
23 TraesCS5D01G100100 chr2A 86.667 120 6 3 2541 2650 671269932 671270051 1.000000e-24 124.0
24 TraesCS5D01G100100 chr2A 86.066 122 7 4 2542 2653 700964379 700964258 3.600000e-24 122.0
25 TraesCS5D01G100100 chr2A 93.750 80 5 0 2542 2621 622455791 622455712 1.290000e-23 121.0
26 TraesCS5D01G100100 chr7A 93.671 79 5 0 2541 2619 80749732 80749810 4.660000e-23 119.0
27 TraesCS5D01G100100 chr7A 92.405 79 6 0 2541 2619 80727507 80727585 2.170000e-21 113.0
28 TraesCS5D01G100100 chr7A 92.405 79 6 0 2541 2619 80804638 80804716 2.170000e-21 113.0
29 TraesCS5D01G100100 chr7A 92.308 78 4 1 2542 2619 664773674 664773599 2.800000e-20 110.0
30 TraesCS5D01G100100 chr7A 87.912 91 8 2 2542 2632 540791290 540791377 1.300000e-18 104.0
31 TraesCS5D01G100100 chr1D 93.478 46 1 1 25 68 483531316 483531271 1.710000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G100100 chr5D 112355630 112358292 2662 False 4918.0 4918 100.0000 1 2663 1 chr5D.!!$F1 2662
1 TraesCS5D01G100100 chr5B 121531427 121533498 2071 False 2859.0 2859 91.7020 1 2074 1 chr5B.!!$F1 2073
2 TraesCS5D01G100100 chr5A 115247861 115249989 2128 False 1545.5 2150 92.6855 1 2134 2 chr5A.!!$F1 2133

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 775 0.179073 CCTCCACTGCGTGATAAGGG 60.179 60.0 9.75 0.0 35.23 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2315 2383 0.040425 GCGGGCGCACTATATTTTGG 60.04 55.0 8.62 0.0 41.49 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 6.993786 TTCATGATGAAATACTTTGGCGTA 57.006 33.333 5.21 0.00 32.71 4.42
151 154 7.598278 AGTTCGCACCAAAATTTATTACATCA 58.402 30.769 0.00 0.00 0.00 3.07
156 159 9.086336 CGCACCAAAATTTATTACATCAAAGAT 57.914 29.630 0.00 0.00 0.00 2.40
448 468 3.885724 AAGCTACAGGAAGAGAAGAGC 57.114 47.619 0.00 0.00 0.00 4.09
498 521 1.772182 AGAGAAGAGTTTGACGCGTG 58.228 50.000 20.70 0.00 0.00 5.34
579 602 7.084486 GGAACATCAAACAAATGAGGAACTAC 58.916 38.462 0.00 0.00 41.55 2.73
715 775 0.179073 CCTCCACTGCGTGATAAGGG 60.179 60.000 9.75 0.00 35.23 3.95
726 786 5.848406 TGCGTGATAAGGGAAAAACATTTT 58.152 33.333 0.00 0.00 0.00 1.82
850 915 4.158579 TCCATCTCCTATATAAGCACGCAG 59.841 45.833 0.00 0.00 0.00 5.18
951 1017 4.778415 GCGACCGAGCGAGCTGAA 62.778 66.667 0.84 0.00 0.00 3.02
1501 1569 2.288273 ACCGACAAGAAAGACGAGAAGG 60.288 50.000 0.00 0.00 0.00 3.46
1509 1577 2.838637 AAGACGAGAAGGAGGAGGAT 57.161 50.000 0.00 0.00 0.00 3.24
1510 1578 2.838637 AGACGAGAAGGAGGAGGATT 57.161 50.000 0.00 0.00 0.00 3.01
1629 1697 1.745489 GATGAACACGGAGGCACCC 60.745 63.158 0.00 0.00 34.64 4.61
1783 1851 4.925646 CCACACATATGTATCACCTGATCG 59.074 45.833 8.32 0.00 36.72 3.69
1825 1893 7.087409 TCGACAACGATGTAATTTACTCCTA 57.913 36.000 0.00 0.00 43.81 2.94
1828 1896 7.179076 ACAACGATGTAATTTACTCCTACCT 57.821 36.000 7.99 0.00 38.24 3.08
1829 1897 7.618137 ACAACGATGTAATTTACTCCTACCTT 58.382 34.615 7.99 0.00 38.24 3.50
1947 2015 6.040209 TGCCTTCGTTAATTTAGGTACTCA 57.960 37.500 0.00 0.00 41.75 3.41
2037 2105 5.461032 TCACCTCTGTTTCTCTTCTTCTC 57.539 43.478 0.00 0.00 0.00 2.87
2088 2156 3.700538 TCAATTTGGTGGGATCTTGGAG 58.299 45.455 0.00 0.00 0.00 3.86
2109 2177 5.771153 AGTAGATTCCGCTACTTACCTTC 57.229 43.478 0.00 0.00 46.67 3.46
2110 2178 4.583907 AGTAGATTCCGCTACTTACCTTCC 59.416 45.833 0.00 0.00 46.67 3.46
2111 2179 3.371965 AGATTCCGCTACTTACCTTCCA 58.628 45.455 0.00 0.00 0.00 3.53
2123 2191 0.326264 ACCTTCCAGCATTCTTCGCT 59.674 50.000 0.00 0.00 41.47 4.93
2134 2202 2.455674 TTCTTCGCTGCTTGCTTAGA 57.544 45.000 0.00 1.42 40.11 2.10
2135 2203 1.714794 TCTTCGCTGCTTGCTTAGAC 58.285 50.000 0.00 0.00 40.11 2.59
2136 2204 1.273606 TCTTCGCTGCTTGCTTAGACT 59.726 47.619 0.00 0.00 40.11 3.24
2137 2205 2.492088 TCTTCGCTGCTTGCTTAGACTA 59.508 45.455 0.00 0.00 40.11 2.59
2138 2206 2.279582 TCGCTGCTTGCTTAGACTAC 57.720 50.000 0.00 0.00 40.11 2.73
2139 2207 1.135083 TCGCTGCTTGCTTAGACTACC 60.135 52.381 0.00 0.00 40.11 3.18
2140 2208 1.134965 CGCTGCTTGCTTAGACTACCT 60.135 52.381 0.00 0.00 40.11 3.08
2141 2209 2.275318 GCTGCTTGCTTAGACTACCTG 58.725 52.381 0.00 0.00 38.95 4.00
2142 2210 2.275318 CTGCTTGCTTAGACTACCTGC 58.725 52.381 0.00 0.00 0.00 4.85
2143 2211 1.281899 GCTTGCTTAGACTACCTGCG 58.718 55.000 0.00 0.00 0.00 5.18
2144 2212 1.281899 CTTGCTTAGACTACCTGCGC 58.718 55.000 0.00 0.00 0.00 6.09
2145 2213 0.895530 TTGCTTAGACTACCTGCGCT 59.104 50.000 9.73 0.00 0.00 5.92
2146 2214 0.895530 TGCTTAGACTACCTGCGCTT 59.104 50.000 9.73 0.00 0.00 4.68
2147 2215 2.097036 TGCTTAGACTACCTGCGCTTA 58.903 47.619 9.73 0.00 0.00 3.09
2148 2216 2.099263 TGCTTAGACTACCTGCGCTTAG 59.901 50.000 9.73 9.27 0.00 2.18
2149 2217 2.358267 GCTTAGACTACCTGCGCTTAGA 59.642 50.000 9.73 0.00 0.00 2.10
2150 2218 3.792794 GCTTAGACTACCTGCGCTTAGAC 60.793 52.174 9.73 7.24 0.00 2.59
2151 2219 2.131776 AGACTACCTGCGCTTAGACT 57.868 50.000 9.73 9.41 0.00 3.24
2152 2220 3.278668 AGACTACCTGCGCTTAGACTA 57.721 47.619 9.73 0.00 0.00 2.59
2153 2221 2.944349 AGACTACCTGCGCTTAGACTAC 59.056 50.000 9.73 0.00 0.00 2.73
2154 2222 2.022934 ACTACCTGCGCTTAGACTACC 58.977 52.381 9.73 0.00 0.00 3.18
2155 2223 1.337387 CTACCTGCGCTTAGACTACCC 59.663 57.143 9.73 0.00 0.00 3.69
2156 2224 0.613853 ACCTGCGCTTAGACTACCCA 60.614 55.000 9.73 0.00 0.00 4.51
2157 2225 0.179108 CCTGCGCTTAGACTACCCAC 60.179 60.000 9.73 0.00 0.00 4.61
2158 2226 0.530744 CTGCGCTTAGACTACCCACA 59.469 55.000 9.73 0.00 0.00 4.17
2159 2227 0.530744 TGCGCTTAGACTACCCACAG 59.469 55.000 9.73 0.00 0.00 3.66
2160 2228 0.531200 GCGCTTAGACTACCCACAGT 59.469 55.000 0.00 0.00 0.00 3.55
2161 2229 1.736032 GCGCTTAGACTACCCACAGTG 60.736 57.143 0.00 0.00 0.00 3.66
2162 2230 1.816835 CGCTTAGACTACCCACAGTGA 59.183 52.381 0.62 0.00 0.00 3.41
2163 2231 2.159366 CGCTTAGACTACCCACAGTGAG 60.159 54.545 0.62 0.00 0.00 3.51
2164 2232 3.090037 GCTTAGACTACCCACAGTGAGA 58.910 50.000 0.62 0.00 0.00 3.27
2165 2233 3.129638 GCTTAGACTACCCACAGTGAGAG 59.870 52.174 0.62 0.00 0.00 3.20
2166 2234 2.982339 AGACTACCCACAGTGAGAGT 57.018 50.000 0.62 1.83 0.00 3.24
2167 2235 5.498393 CTTAGACTACCCACAGTGAGAGTA 58.502 45.833 0.62 0.26 0.00 2.59
2168 2236 4.383931 AGACTACCCACAGTGAGAGTAA 57.616 45.455 0.62 0.00 0.00 2.24
2169 2237 4.080687 AGACTACCCACAGTGAGAGTAAC 58.919 47.826 0.62 0.00 0.00 2.50
2170 2238 3.825014 GACTACCCACAGTGAGAGTAACA 59.175 47.826 0.62 0.00 0.00 2.41
2171 2239 4.417437 ACTACCCACAGTGAGAGTAACAT 58.583 43.478 0.62 0.00 0.00 2.71
2172 2240 5.577100 ACTACCCACAGTGAGAGTAACATA 58.423 41.667 0.62 0.00 0.00 2.29
2173 2241 5.652891 ACTACCCACAGTGAGAGTAACATAG 59.347 44.000 0.62 0.00 0.00 2.23
2174 2242 4.673968 ACCCACAGTGAGAGTAACATAGA 58.326 43.478 0.62 0.00 0.00 1.98
2175 2243 5.273208 ACCCACAGTGAGAGTAACATAGAT 58.727 41.667 0.62 0.00 0.00 1.98
2176 2244 5.127845 ACCCACAGTGAGAGTAACATAGATG 59.872 44.000 0.62 0.00 0.00 2.90
2177 2245 5.452496 CCCACAGTGAGAGTAACATAGATGG 60.452 48.000 0.62 0.00 0.00 3.51
2178 2246 5.127845 CCACAGTGAGAGTAACATAGATGGT 59.872 44.000 0.62 0.00 0.00 3.55
2179 2247 6.321435 CCACAGTGAGAGTAACATAGATGGTA 59.679 42.308 0.62 0.00 0.00 3.25
2180 2248 7.147897 CCACAGTGAGAGTAACATAGATGGTAA 60.148 40.741 0.62 0.00 30.66 2.85
2181 2249 8.417106 CACAGTGAGAGTAACATAGATGGTAAT 58.583 37.037 0.00 0.00 30.66 1.89
2182 2250 9.642343 ACAGTGAGAGTAACATAGATGGTAATA 57.358 33.333 0.00 0.00 30.66 0.98
2218 2286 9.662947 TCTAGATAAAATAGATGATGTGGCATG 57.337 33.333 0.00 0.00 0.00 4.06
2219 2287 9.445878 CTAGATAAAATAGATGATGTGGCATGT 57.554 33.333 0.00 0.00 0.00 3.21
2221 2289 9.797642 AGATAAAATAGATGATGTGGCATGTAA 57.202 29.630 0.00 0.00 29.35 2.41
2228 2296 9.743581 ATAGATGATGTGGCATGTAATTAATGA 57.256 29.630 0.00 0.00 29.35 2.57
2229 2297 8.467963 AGATGATGTGGCATGTAATTAATGAA 57.532 30.769 0.00 0.00 0.00 2.57
2230 2298 8.573885 AGATGATGTGGCATGTAATTAATGAAG 58.426 33.333 0.00 0.00 0.00 3.02
2231 2299 7.878547 TGATGTGGCATGTAATTAATGAAGA 57.121 32.000 0.00 0.00 0.00 2.87
2232 2300 8.291191 TGATGTGGCATGTAATTAATGAAGAA 57.709 30.769 0.00 0.00 0.00 2.52
2233 2301 8.747471 TGATGTGGCATGTAATTAATGAAGAAA 58.253 29.630 0.00 0.00 0.00 2.52
2234 2302 9.585099 GATGTGGCATGTAATTAATGAAGAAAA 57.415 29.630 0.00 0.00 0.00 2.29
2235 2303 9.941325 ATGTGGCATGTAATTAATGAAGAAAAA 57.059 25.926 0.00 0.00 0.00 1.94
2236 2304 9.421806 TGTGGCATGTAATTAATGAAGAAAAAG 57.578 29.630 0.00 0.00 0.00 2.27
2237 2305 9.638239 GTGGCATGTAATTAATGAAGAAAAAGA 57.362 29.630 0.00 0.00 0.00 2.52
2238 2306 9.859427 TGGCATGTAATTAATGAAGAAAAAGAG 57.141 29.630 10.14 0.00 0.00 2.85
2246 2314 5.424121 AATGAAGAAAAAGAGACACGTGG 57.576 39.130 21.57 1.66 0.00 4.94
2247 2315 3.869065 TGAAGAAAAAGAGACACGTGGT 58.131 40.909 21.57 6.43 0.00 4.16
2248 2316 5.013568 TGAAGAAAAAGAGACACGTGGTA 57.986 39.130 21.57 0.00 0.00 3.25
2249 2317 5.421277 TGAAGAAAAAGAGACACGTGGTAA 58.579 37.500 21.57 0.00 0.00 2.85
2250 2318 5.292589 TGAAGAAAAAGAGACACGTGGTAAC 59.707 40.000 21.57 8.25 0.00 2.50
2269 2337 8.352137 TGGTAACATAGCTAGTTACTGTAACA 57.648 34.615 27.12 19.73 46.49 2.41
2270 2338 8.974238 TGGTAACATAGCTAGTTACTGTAACAT 58.026 33.333 27.12 16.67 46.49 2.71
2271 2339 9.813446 GGTAACATAGCTAGTTACTGTAACATT 57.187 33.333 27.12 13.69 46.49 2.71
2275 2343 9.798994 ACATAGCTAGTTACTGTAACATTACAC 57.201 33.333 27.12 13.16 41.07 2.90
2276 2344 9.797556 CATAGCTAGTTACTGTAACATTACACA 57.202 33.333 27.12 10.36 41.07 3.72
2307 2375 7.886405 AAAAGATGAGTCTAAAACGTACTCC 57.114 36.000 11.81 0.00 39.10 3.85
2308 2376 5.579564 AGATGAGTCTAAAACGTACTCCC 57.420 43.478 11.81 5.30 39.10 4.30
2309 2377 5.262804 AGATGAGTCTAAAACGTACTCCCT 58.737 41.667 11.81 7.11 39.10 4.20
2310 2378 5.357596 AGATGAGTCTAAAACGTACTCCCTC 59.642 44.000 11.81 9.04 39.10 4.30
2311 2379 3.760684 TGAGTCTAAAACGTACTCCCTCC 59.239 47.826 11.81 0.00 39.10 4.30
2312 2380 3.760684 GAGTCTAAAACGTACTCCCTCCA 59.239 47.826 4.39 0.00 34.79 3.86
2313 2381 4.351127 AGTCTAAAACGTACTCCCTCCAT 58.649 43.478 0.00 0.00 0.00 3.41
2314 2382 4.776308 AGTCTAAAACGTACTCCCTCCATT 59.224 41.667 0.00 0.00 0.00 3.16
2315 2383 5.105432 AGTCTAAAACGTACTCCCTCCATTC 60.105 44.000 0.00 0.00 0.00 2.67
2316 2384 3.345508 AAAACGTACTCCCTCCATTCC 57.654 47.619 0.00 0.00 0.00 3.01
2317 2385 1.946984 AACGTACTCCCTCCATTCCA 58.053 50.000 0.00 0.00 0.00 3.53
2318 2386 1.946984 ACGTACTCCCTCCATTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
2319 2387 2.262637 ACGTACTCCCTCCATTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
2320 2388 2.640826 ACGTACTCCCTCCATTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2321 2389 3.265995 ACGTACTCCCTCCATTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2322 2390 4.472108 ACGTACTCCCTCCATTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
2323 2391 5.132144 ACGTACTCCCTCCATTCCAAAATAT 59.868 40.000 0.00 0.00 0.00 1.28
2324 2392 6.328148 ACGTACTCCCTCCATTCCAAAATATA 59.672 38.462 0.00 0.00 0.00 0.86
2325 2393 6.874134 CGTACTCCCTCCATTCCAAAATATAG 59.126 42.308 0.00 0.00 0.00 1.31
2326 2394 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
2327 2395 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
2328 2396 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
2329 2397 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
2330 2398 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
2331 2399 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
2332 2400 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
2333 2401 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
2334 2402 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
2335 2403 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
2350 2418 4.430765 GCGCTTCCCGAGGTCGAA 62.431 66.667 0.00 0.00 43.02 3.71
2351 2419 2.494918 CGCTTCCCGAGGTCGAAT 59.505 61.111 0.00 0.00 43.02 3.34
2352 2420 1.153628 CGCTTCCCGAGGTCGAATT 60.154 57.895 0.00 0.00 43.02 2.17
2353 2421 0.739813 CGCTTCCCGAGGTCGAATTT 60.740 55.000 0.00 0.00 43.02 1.82
2354 2422 1.450025 GCTTCCCGAGGTCGAATTTT 58.550 50.000 0.00 0.00 43.02 1.82
2355 2423 1.130561 GCTTCCCGAGGTCGAATTTTG 59.869 52.381 0.00 0.00 43.02 2.44
2356 2424 2.695359 CTTCCCGAGGTCGAATTTTGA 58.305 47.619 0.00 0.00 43.02 2.69
2357 2425 2.088950 TCCCGAGGTCGAATTTTGAC 57.911 50.000 8.09 8.09 43.02 3.18
2371 2439 9.332301 GTCGAATTTTGACCATAAATTTAACGA 57.668 29.630 1.21 0.00 35.83 3.85
2372 2440 9.894783 TCGAATTTTGACCATAAATTTAACGAA 57.105 25.926 1.21 0.00 35.83 3.85
2373 2441 9.931710 CGAATTTTGACCATAAATTTAACGAAC 57.068 29.630 1.21 0.00 35.83 3.95
2374 2442 9.931710 GAATTTTGACCATAAATTTAACGAACG 57.068 29.630 1.21 0.00 35.83 3.95
2375 2443 9.680315 AATTTTGACCATAAATTTAACGAACGA 57.320 25.926 1.21 0.00 32.75 3.85
2376 2444 8.716619 TTTTGACCATAAATTTAACGAACGAG 57.283 30.769 1.21 0.00 0.00 4.18
2377 2445 7.655236 TTGACCATAAATTTAACGAACGAGA 57.345 32.000 1.21 0.00 0.00 4.04
2378 2446 7.052565 TGACCATAAATTTAACGAACGAGAC 57.947 36.000 1.21 0.00 0.00 3.36
2379 2447 6.091169 TGACCATAAATTTAACGAACGAGACC 59.909 38.462 1.21 0.00 0.00 3.85
2380 2448 5.062558 ACCATAAATTTAACGAACGAGACCG 59.937 40.000 1.21 0.00 42.50 4.79
2381 2449 5.289193 CCATAAATTTAACGAACGAGACCGA 59.711 40.000 1.21 0.00 39.50 4.69
2382 2450 4.635961 AAATTTAACGAACGAGACCGAC 57.364 40.909 0.14 0.00 39.50 4.79
2383 2451 3.565905 ATTTAACGAACGAGACCGACT 57.434 42.857 0.14 0.00 39.50 4.18
2384 2452 2.320805 TTAACGAACGAGACCGACTG 57.679 50.000 0.14 0.00 39.50 3.51
2385 2453 0.110056 TAACGAACGAGACCGACTGC 60.110 55.000 0.14 0.00 39.50 4.40
2386 2454 2.870161 CGAACGAGACCGACTGCG 60.870 66.667 0.00 0.00 39.50 5.18
2397 2465 2.975799 GACTGCGGCGGGTGAAAA 60.976 61.111 14.26 0.00 0.00 2.29
2398 2466 2.517402 ACTGCGGCGGGTGAAAAA 60.517 55.556 14.26 0.00 0.00 1.94
2453 2521 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
2454 2522 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
2455 2523 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
2456 2524 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
2457 2525 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
2458 2526 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
2459 2527 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
2460 2528 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
2461 2529 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
2462 2530 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
2463 2531 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
2464 2532 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
2476 2544 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
2477 2545 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
2478 2546 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
2479 2547 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
2480 2548 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
2481 2549 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
2482 2550 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
2483 2551 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
2484 2552 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
2485 2553 7.695201 GCAATCGGTCTTGGTAGTTAAATTTAC 59.305 37.037 0.00 0.00 0.00 2.01
2486 2554 6.949578 TCGGTCTTGGTAGTTAAATTTACG 57.050 37.500 0.00 0.00 0.00 3.18
2487 2555 5.868801 TCGGTCTTGGTAGTTAAATTTACGG 59.131 40.000 0.00 0.00 0.00 4.02
2488 2556 5.639082 CGGTCTTGGTAGTTAAATTTACGGT 59.361 40.000 0.00 0.00 0.00 4.83
2489 2557 6.183360 CGGTCTTGGTAGTTAAATTTACGGTC 60.183 42.308 0.00 0.00 0.00 4.79
2490 2558 6.650390 GGTCTTGGTAGTTAAATTTACGGTCA 59.350 38.462 0.00 0.00 0.00 4.02
2491 2559 7.173047 GGTCTTGGTAGTTAAATTTACGGTCAA 59.827 37.037 0.00 0.00 0.00 3.18
2492 2560 8.558700 GTCTTGGTAGTTAAATTTACGGTCAAA 58.441 33.333 0.00 0.00 0.00 2.69
2493 2561 8.776470 TCTTGGTAGTTAAATTTACGGTCAAAG 58.224 33.333 0.00 0.00 0.00 2.77
2494 2562 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
2495 2563 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
2496 2564 8.344098 TGGTAGTTAAATTTACGGTCAAAGTTG 58.656 33.333 0.00 0.00 29.44 3.16
2497 2565 8.558700 GGTAGTTAAATTTACGGTCAAAGTTGA 58.441 33.333 0.00 0.00 34.20 3.18
2498 2566 9.934190 GTAGTTAAATTTACGGTCAAAGTTGAA 57.066 29.630 0.00 0.00 39.21 2.69
2500 2568 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
2501 2569 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
2502 2570 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
2503 2571 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
2504 2572 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.000 0.00 0.00 39.21 4.94
2505 2573 1.305201 GGTCAAAGTTGAAGCACGGA 58.695 50.000 0.00 0.00 39.21 4.69
2506 2574 1.264288 GGTCAAAGTTGAAGCACGGAG 59.736 52.381 0.00 0.00 39.21 4.63
2507 2575 2.210116 GTCAAAGTTGAAGCACGGAGA 58.790 47.619 0.00 0.00 39.21 3.71
2508 2576 2.808543 GTCAAAGTTGAAGCACGGAGAT 59.191 45.455 0.00 0.00 39.21 2.75
2509 2577 3.994392 GTCAAAGTTGAAGCACGGAGATA 59.006 43.478 0.00 0.00 39.21 1.98
2510 2578 4.092091 GTCAAAGTTGAAGCACGGAGATAG 59.908 45.833 0.00 0.00 39.21 2.08
2511 2579 4.021456 TCAAAGTTGAAGCACGGAGATAGA 60.021 41.667 0.00 0.00 33.55 1.98
2512 2580 3.791973 AGTTGAAGCACGGAGATAGAG 57.208 47.619 0.00 0.00 0.00 2.43
2513 2581 2.428890 AGTTGAAGCACGGAGATAGAGG 59.571 50.000 0.00 0.00 0.00 3.69
2514 2582 2.427453 GTTGAAGCACGGAGATAGAGGA 59.573 50.000 0.00 0.00 0.00 3.71
2515 2583 2.735151 TGAAGCACGGAGATAGAGGAA 58.265 47.619 0.00 0.00 0.00 3.36
2516 2584 2.690497 TGAAGCACGGAGATAGAGGAAG 59.310 50.000 0.00 0.00 0.00 3.46
2517 2585 1.036707 AGCACGGAGATAGAGGAAGC 58.963 55.000 0.00 0.00 0.00 3.86
2518 2586 0.747255 GCACGGAGATAGAGGAAGCA 59.253 55.000 0.00 0.00 0.00 3.91
2519 2587 1.537135 GCACGGAGATAGAGGAAGCAC 60.537 57.143 0.00 0.00 0.00 4.40
2520 2588 2.028130 CACGGAGATAGAGGAAGCACT 58.972 52.381 0.00 0.00 0.00 4.40
2521 2589 3.215151 CACGGAGATAGAGGAAGCACTA 58.785 50.000 0.00 0.00 0.00 2.74
2522 2590 3.003897 CACGGAGATAGAGGAAGCACTAC 59.996 52.174 0.00 0.00 0.00 2.73
2523 2591 3.215151 CGGAGATAGAGGAAGCACTACA 58.785 50.000 0.00 0.00 0.00 2.74
2524 2592 3.823873 CGGAGATAGAGGAAGCACTACAT 59.176 47.826 0.00 0.00 0.00 2.29
2525 2593 4.279671 CGGAGATAGAGGAAGCACTACATT 59.720 45.833 0.00 0.00 0.00 2.71
2526 2594 5.537188 GGAGATAGAGGAAGCACTACATTG 58.463 45.833 0.00 0.00 0.00 2.82
2527 2595 5.069781 GGAGATAGAGGAAGCACTACATTGT 59.930 44.000 0.00 0.00 0.00 2.71
2528 2596 5.911752 AGATAGAGGAAGCACTACATTGTG 58.088 41.667 0.00 0.00 40.62 3.33
2529 2597 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
2530 2598 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
2531 2599 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
2532 2600 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
2533 2601 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
2534 2602 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
2535 2603 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
2539 2607 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
2540 2608 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
2541 2609 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
2542 2610 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
2543 2611 3.591527 ACATTGTGGAATGGAGGGAGTAA 59.408 43.478 0.00 0.00 43.00 2.24
2544 2612 4.230502 ACATTGTGGAATGGAGGGAGTAAT 59.769 41.667 0.00 0.00 43.00 1.89
2545 2613 5.431731 ACATTGTGGAATGGAGGGAGTAATA 59.568 40.000 0.00 0.00 43.00 0.98
2546 2614 6.069088 ACATTGTGGAATGGAGGGAGTAATAA 60.069 38.462 0.00 0.00 43.00 1.40
2547 2615 6.395780 TTGTGGAATGGAGGGAGTAATAAA 57.604 37.500 0.00 0.00 0.00 1.40
2548 2616 6.590656 TGTGGAATGGAGGGAGTAATAAAT 57.409 37.500 0.00 0.00 0.00 1.40
2549 2617 6.364701 TGTGGAATGGAGGGAGTAATAAATG 58.635 40.000 0.00 0.00 0.00 2.32
2550 2618 6.159575 TGTGGAATGGAGGGAGTAATAAATGA 59.840 38.462 0.00 0.00 0.00 2.57
2551 2619 7.060421 GTGGAATGGAGGGAGTAATAAATGAA 58.940 38.462 0.00 0.00 0.00 2.57
2552 2620 7.229506 GTGGAATGGAGGGAGTAATAAATGAAG 59.770 40.741 0.00 0.00 0.00 3.02
2553 2621 7.091993 TGGAATGGAGGGAGTAATAAATGAAGT 60.092 37.037 0.00 0.00 0.00 3.01
2554 2622 7.229506 GGAATGGAGGGAGTAATAAATGAAGTG 59.770 40.741 0.00 0.00 0.00 3.16
2555 2623 6.884472 TGGAGGGAGTAATAAATGAAGTGA 57.116 37.500 0.00 0.00 0.00 3.41
2556 2624 7.451731 TGGAGGGAGTAATAAATGAAGTGAT 57.548 36.000 0.00 0.00 0.00 3.06
2557 2625 7.282585 TGGAGGGAGTAATAAATGAAGTGATG 58.717 38.462 0.00 0.00 0.00 3.07
2558 2626 6.205658 GGAGGGAGTAATAAATGAAGTGATGC 59.794 42.308 0.00 0.00 0.00 3.91
2559 2627 6.662755 AGGGAGTAATAAATGAAGTGATGCA 58.337 36.000 0.00 0.00 0.00 3.96
2560 2628 7.293073 AGGGAGTAATAAATGAAGTGATGCAT 58.707 34.615 0.00 0.00 0.00 3.96
2561 2629 7.230108 AGGGAGTAATAAATGAAGTGATGCATG 59.770 37.037 2.46 0.00 0.00 4.06
2562 2630 7.229306 GGGAGTAATAAATGAAGTGATGCATGA 59.771 37.037 2.46 0.00 0.00 3.07
2563 2631 8.072567 GGAGTAATAAATGAAGTGATGCATGAC 58.927 37.037 8.39 8.39 0.00 3.06
2564 2632 8.510243 AGTAATAAATGAAGTGATGCATGACA 57.490 30.769 18.76 1.11 0.00 3.58
2565 2633 9.128404 AGTAATAAATGAAGTGATGCATGACAT 57.872 29.630 18.76 6.38 43.54 3.06
2568 2636 9.740239 AATAAATGAAGTGATGCATGACATAAC 57.260 29.630 18.76 7.00 40.15 1.89
2569 2637 6.762702 AATGAAGTGATGCATGACATAACA 57.237 33.333 18.76 11.92 42.09 2.41
2570 2638 5.550232 TGAAGTGATGCATGACATAACAC 57.450 39.130 18.76 11.21 42.09 3.32
2571 2639 5.002516 TGAAGTGATGCATGACATAACACA 58.997 37.500 18.76 12.78 42.09 3.72
2572 2640 5.648960 TGAAGTGATGCATGACATAACACAT 59.351 36.000 18.76 4.58 42.09 3.21
2573 2641 6.822676 TGAAGTGATGCATGACATAACACATA 59.177 34.615 18.76 0.30 42.09 2.29
2574 2642 7.499895 TGAAGTGATGCATGACATAACACATAT 59.500 33.333 18.76 2.77 42.09 1.78
2575 2643 8.907222 AAGTGATGCATGACATAACACATATA 57.093 30.769 18.76 0.00 42.09 0.86
2576 2644 9.511272 AAGTGATGCATGACATAACACATATAT 57.489 29.630 18.76 0.00 42.09 0.86
2577 2645 9.511272 AGTGATGCATGACATAACACATATATT 57.489 29.630 18.76 0.00 42.09 1.28
2591 2659 7.907841 ACACATATATTACTACCCACTGTGA 57.092 36.000 9.86 0.00 36.03 3.58
2592 2660 8.313944 ACACATATATTACTACCCACTGTGAA 57.686 34.615 9.86 0.00 36.03 3.18
2593 2661 8.421784 ACACATATATTACTACCCACTGTGAAG 58.578 37.037 9.86 6.32 36.03 3.02
2594 2662 8.638873 CACATATATTACTACCCACTGTGAAGA 58.361 37.037 9.86 0.00 34.81 2.87
2595 2663 9.381038 ACATATATTACTACCCACTGTGAAGAT 57.619 33.333 9.86 0.02 0.00 2.40
2600 2668 8.834004 ATTACTACCCACTGTGAAGATAGTAA 57.166 34.615 21.50 21.50 37.78 2.24
2601 2669 6.527057 ACTACCCACTGTGAAGATAGTAAC 57.473 41.667 9.86 0.00 0.00 2.50
2602 2670 6.014647 ACTACCCACTGTGAAGATAGTAACA 58.985 40.000 9.86 0.00 0.00 2.41
2603 2671 6.668283 ACTACCCACTGTGAAGATAGTAACAT 59.332 38.462 9.86 0.00 0.00 2.71
2604 2672 7.837689 ACTACCCACTGTGAAGATAGTAACATA 59.162 37.037 9.86 0.00 0.00 2.29
2605 2673 7.113658 ACCCACTGTGAAGATAGTAACATAG 57.886 40.000 9.86 0.00 0.00 2.23
2606 2674 6.895756 ACCCACTGTGAAGATAGTAACATAGA 59.104 38.462 9.86 0.00 0.00 1.98
2607 2675 7.147880 ACCCACTGTGAAGATAGTAACATAGAC 60.148 40.741 9.86 0.00 0.00 2.59
2608 2676 7.068839 CCCACTGTGAAGATAGTAACATAGACT 59.931 40.741 9.86 0.00 0.00 3.24
2609 2677 9.121658 CCACTGTGAAGATAGTAACATAGACTA 57.878 37.037 9.86 0.00 34.01 2.59
2611 2679 9.908747 ACTGTGAAGATAGTAACATAGACTAGT 57.091 33.333 0.00 0.00 33.03 2.57
2650 2718 9.574516 AAGTTACTTTCCATTGTGATTAGTCTT 57.425 29.630 0.00 0.00 0.00 3.01
2655 2723 9.003658 ACTTTCCATTGTGATTAGTCTTAGTTG 57.996 33.333 0.00 0.00 0.00 3.16
2656 2724 9.219603 CTTTCCATTGTGATTAGTCTTAGTTGA 57.780 33.333 0.00 0.00 0.00 3.18
2657 2725 8.777865 TTCCATTGTGATTAGTCTTAGTTGAG 57.222 34.615 0.00 0.00 0.00 3.02
2658 2726 7.907389 TCCATTGTGATTAGTCTTAGTTGAGT 58.093 34.615 0.00 0.00 0.00 3.41
2659 2727 9.031537 TCCATTGTGATTAGTCTTAGTTGAGTA 57.968 33.333 0.00 0.00 0.00 2.59
2660 2728 9.088512 CCATTGTGATTAGTCTTAGTTGAGTAC 57.911 37.037 0.00 0.00 0.00 2.73
2661 2729 9.862371 CATTGTGATTAGTCTTAGTTGAGTACT 57.138 33.333 0.00 0.00 41.04 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 127 8.905103 ATGTAATAAATTTTGGTGCGAACTAC 57.095 30.769 0.00 0.00 0.00 2.73
151 154 5.761234 TGTACTACGTTCCTGCAAAATCTTT 59.239 36.000 0.00 0.00 0.00 2.52
156 159 3.794717 TGTGTACTACGTTCCTGCAAAA 58.205 40.909 0.00 0.00 0.00 2.44
373 389 3.394645 CTTAAGGGGTCTATTGGGTCCT 58.605 50.000 0.00 0.00 0.00 3.85
437 457 1.484653 GAGGGGGAAGCTCTTCTCTTC 59.515 57.143 9.16 4.66 39.92 2.87
579 602 5.609423 AGAAGCAAGTAGAGCATGAATAGG 58.391 41.667 0.00 0.00 0.00 2.57
850 915 0.319900 TGGAGAAGAAGCGTGTGAGC 60.320 55.000 0.00 0.00 37.41 4.26
938 1004 1.227999 TGGTTTTTCAGCTCGCTCGG 61.228 55.000 0.00 0.00 0.00 4.63
949 1015 3.005472 GGAGCTTTGTAGGGTGGTTTTTC 59.995 47.826 0.00 0.00 0.00 2.29
951 1017 2.594131 GGAGCTTTGTAGGGTGGTTTT 58.406 47.619 0.00 0.00 0.00 2.43
1501 1569 2.483538 GCTTCTCTGCTGAATCCTCCTC 60.484 54.545 0.00 0.00 0.00 3.71
1510 1578 0.900182 TCCTTCGGCTTCTCTGCTGA 60.900 55.000 0.00 0.00 45.46 4.26
1587 1655 4.222810 TCCTTCATTTTCTGACCGATCTCA 59.777 41.667 0.00 0.00 32.17 3.27
1783 1851 4.032355 GTCGAACTGAACTCTCATCGATC 58.968 47.826 0.00 0.00 42.19 3.69
1947 2015 4.298626 TCCTGCCACCTCAGATAAAGTAT 58.701 43.478 0.00 0.00 36.19 2.12
2037 2105 1.335810 CATGGGATTCAATGCTCACCG 59.664 52.381 0.00 0.00 0.00 4.94
2088 2156 4.340381 TGGAAGGTAAGTAGCGGAATCTAC 59.660 45.833 0.00 0.00 39.28 2.59
2102 2170 2.027192 AGCGAAGAATGCTGGAAGGTAA 60.027 45.455 0.00 0.00 42.14 2.85
2104 2172 0.326264 AGCGAAGAATGCTGGAAGGT 59.674 50.000 0.00 0.00 42.14 3.50
2123 2191 1.404181 CGCAGGTAGTCTAAGCAAGCA 60.404 52.381 0.00 0.00 0.00 3.91
2134 2202 2.022934 GGTAGTCTAAGCGCAGGTAGT 58.977 52.381 11.47 0.00 37.06 2.73
2135 2203 1.337387 GGGTAGTCTAAGCGCAGGTAG 59.663 57.143 11.47 8.36 37.06 3.18
2136 2204 1.341285 TGGGTAGTCTAAGCGCAGGTA 60.341 52.381 11.47 0.00 37.06 3.08
2137 2205 0.613853 TGGGTAGTCTAAGCGCAGGT 60.614 55.000 11.47 0.00 44.60 4.00
2138 2206 0.179108 GTGGGTAGTCTAAGCGCAGG 60.179 60.000 11.47 0.00 0.00 4.85
2139 2207 0.530744 TGTGGGTAGTCTAAGCGCAG 59.469 55.000 11.47 0.00 0.00 5.18
2140 2208 0.530744 CTGTGGGTAGTCTAAGCGCA 59.469 55.000 11.47 0.00 0.00 6.09
2141 2209 0.531200 ACTGTGGGTAGTCTAAGCGC 59.469 55.000 0.00 0.00 0.00 5.92
2142 2210 1.816835 TCACTGTGGGTAGTCTAAGCG 59.183 52.381 8.11 0.00 0.00 4.68
2143 2211 3.090037 TCTCACTGTGGGTAGTCTAAGC 58.910 50.000 7.67 0.00 0.00 3.09
2144 2212 4.337145 ACTCTCACTGTGGGTAGTCTAAG 58.663 47.826 7.67 0.00 0.00 2.18
2145 2213 4.383931 ACTCTCACTGTGGGTAGTCTAA 57.616 45.455 7.67 0.00 0.00 2.10
2146 2214 5.221986 TGTTACTCTCACTGTGGGTAGTCTA 60.222 44.000 7.67 0.57 0.00 2.59
2147 2215 2.982339 ACTCTCACTGTGGGTAGTCT 57.018 50.000 7.67 0.00 0.00 3.24
2148 2216 3.825014 TGTTACTCTCACTGTGGGTAGTC 59.175 47.826 7.67 0.96 0.00 2.59
2149 2217 3.840991 TGTTACTCTCACTGTGGGTAGT 58.159 45.455 7.67 11.79 0.00 2.73
2150 2218 5.886474 TCTATGTTACTCTCACTGTGGGTAG 59.114 44.000 7.67 6.58 0.00 3.18
2151 2219 5.823312 TCTATGTTACTCTCACTGTGGGTA 58.177 41.667 7.67 6.37 0.00 3.69
2152 2220 4.673968 TCTATGTTACTCTCACTGTGGGT 58.326 43.478 7.67 7.28 0.00 4.51
2153 2221 5.452496 CCATCTATGTTACTCTCACTGTGGG 60.452 48.000 8.11 4.27 0.00 4.61
2154 2222 5.127845 ACCATCTATGTTACTCTCACTGTGG 59.872 44.000 8.11 0.00 0.00 4.17
2155 2223 6.214191 ACCATCTATGTTACTCTCACTGTG 57.786 41.667 0.17 0.17 0.00 3.66
2156 2224 7.956328 TTACCATCTATGTTACTCTCACTGT 57.044 36.000 0.00 0.00 0.00 3.55
2192 2260 9.662947 CATGCCACATCATCTATTTTATCTAGA 57.337 33.333 0.00 0.00 0.00 2.43
2193 2261 9.445878 ACATGCCACATCATCTATTTTATCTAG 57.554 33.333 0.00 0.00 0.00 2.43
2195 2263 9.797642 TTACATGCCACATCATCTATTTTATCT 57.202 29.630 0.00 0.00 0.00 1.98
2202 2270 9.743581 TCATTAATTACATGCCACATCATCTAT 57.256 29.630 0.00 0.00 0.00 1.98
2203 2271 9.571816 TTCATTAATTACATGCCACATCATCTA 57.428 29.630 0.00 0.00 0.00 1.98
2204 2272 8.467963 TTCATTAATTACATGCCACATCATCT 57.532 30.769 0.00 0.00 0.00 2.90
2205 2273 8.570488 TCTTCATTAATTACATGCCACATCATC 58.430 33.333 0.00 0.00 0.00 2.92
2206 2274 8.467963 TCTTCATTAATTACATGCCACATCAT 57.532 30.769 0.00 0.00 0.00 2.45
2207 2275 7.878547 TCTTCATTAATTACATGCCACATCA 57.121 32.000 0.00 0.00 0.00 3.07
2208 2276 9.585099 TTTTCTTCATTAATTACATGCCACATC 57.415 29.630 0.00 0.00 0.00 3.06
2209 2277 9.941325 TTTTTCTTCATTAATTACATGCCACAT 57.059 25.926 0.00 0.00 0.00 3.21
2210 2278 9.421806 CTTTTTCTTCATTAATTACATGCCACA 57.578 29.630 0.00 0.00 0.00 4.17
2211 2279 9.638239 TCTTTTTCTTCATTAATTACATGCCAC 57.362 29.630 0.00 0.00 0.00 5.01
2212 2280 9.859427 CTCTTTTTCTTCATTAATTACATGCCA 57.141 29.630 0.00 0.00 0.00 4.92
2220 2288 8.076178 CCACGTGTCTCTTTTTCTTCATTAATT 58.924 33.333 15.65 0.00 0.00 1.40
2221 2289 7.228706 ACCACGTGTCTCTTTTTCTTCATTAAT 59.771 33.333 15.65 0.00 0.00 1.40
2222 2290 6.540914 ACCACGTGTCTCTTTTTCTTCATTAA 59.459 34.615 15.65 0.00 0.00 1.40
2223 2291 6.053005 ACCACGTGTCTCTTTTTCTTCATTA 58.947 36.000 15.65 0.00 0.00 1.90
2224 2292 4.881850 ACCACGTGTCTCTTTTTCTTCATT 59.118 37.500 15.65 0.00 0.00 2.57
2225 2293 4.451900 ACCACGTGTCTCTTTTTCTTCAT 58.548 39.130 15.65 0.00 0.00 2.57
2226 2294 3.869065 ACCACGTGTCTCTTTTTCTTCA 58.131 40.909 15.65 0.00 0.00 3.02
2227 2295 5.292589 TGTTACCACGTGTCTCTTTTTCTTC 59.707 40.000 15.65 0.00 0.00 2.87
2228 2296 5.180271 TGTTACCACGTGTCTCTTTTTCTT 58.820 37.500 15.65 0.00 0.00 2.52
2229 2297 4.761975 TGTTACCACGTGTCTCTTTTTCT 58.238 39.130 15.65 0.00 0.00 2.52
2230 2298 5.668558 ATGTTACCACGTGTCTCTTTTTC 57.331 39.130 15.65 0.00 0.00 2.29
2231 2299 5.178809 GCTATGTTACCACGTGTCTCTTTTT 59.821 40.000 15.65 0.00 0.00 1.94
2232 2300 4.689345 GCTATGTTACCACGTGTCTCTTTT 59.311 41.667 15.65 0.00 0.00 2.27
2233 2301 4.021368 AGCTATGTTACCACGTGTCTCTTT 60.021 41.667 15.65 0.00 0.00 2.52
2234 2302 3.510360 AGCTATGTTACCACGTGTCTCTT 59.490 43.478 15.65 3.37 0.00 2.85
2235 2303 3.090037 AGCTATGTTACCACGTGTCTCT 58.910 45.455 15.65 0.00 0.00 3.10
2236 2304 3.505464 AGCTATGTTACCACGTGTCTC 57.495 47.619 15.65 2.75 0.00 3.36
2237 2305 4.015084 ACTAGCTATGTTACCACGTGTCT 58.985 43.478 15.65 1.18 0.00 3.41
2238 2306 4.367386 ACTAGCTATGTTACCACGTGTC 57.633 45.455 15.65 2.76 0.00 3.67
2239 2307 4.796038 AACTAGCTATGTTACCACGTGT 57.204 40.909 15.65 5.35 0.00 4.49
2240 2308 5.742453 CAGTAACTAGCTATGTTACCACGTG 59.258 44.000 25.92 9.08 46.31 4.49
2241 2309 5.416952 ACAGTAACTAGCTATGTTACCACGT 59.583 40.000 25.92 21.11 46.31 4.49
2242 2310 5.888105 ACAGTAACTAGCTATGTTACCACG 58.112 41.667 25.92 20.74 46.31 4.94
2243 2311 8.246180 TGTTACAGTAACTAGCTATGTTACCAC 58.754 37.037 25.92 20.75 46.31 4.16
2244 2312 8.352137 TGTTACAGTAACTAGCTATGTTACCA 57.648 34.615 25.92 19.04 46.31 3.25
2245 2313 9.813446 AATGTTACAGTAACTAGCTATGTTACC 57.187 33.333 25.92 17.65 46.31 2.85
2249 2317 9.798994 GTGTAATGTTACAGTAACTAGCTATGT 57.201 33.333 21.56 0.00 43.67 2.29
2250 2318 9.797556 TGTGTAATGTTACAGTAACTAGCTATG 57.202 33.333 21.56 0.00 43.67 2.23
2282 2350 7.387122 GGGAGTACGTTTTAGACTCATCTTTTT 59.613 37.037 15.35 0.00 41.18 1.94
2283 2351 6.872547 GGGAGTACGTTTTAGACTCATCTTTT 59.127 38.462 15.35 0.00 41.18 2.27
2284 2352 6.210984 AGGGAGTACGTTTTAGACTCATCTTT 59.789 38.462 15.35 0.00 41.18 2.52
2285 2353 5.715753 AGGGAGTACGTTTTAGACTCATCTT 59.284 40.000 15.35 0.00 41.18 2.40
2286 2354 5.262804 AGGGAGTACGTTTTAGACTCATCT 58.737 41.667 15.35 9.96 41.18 2.90
2287 2355 5.450274 GGAGGGAGTACGTTTTAGACTCATC 60.450 48.000 15.35 12.20 41.18 2.92
2288 2356 4.401837 GGAGGGAGTACGTTTTAGACTCAT 59.598 45.833 15.35 5.26 41.18 2.90
2289 2357 3.760684 GGAGGGAGTACGTTTTAGACTCA 59.239 47.826 15.35 0.00 41.18 3.41
2290 2358 3.760684 TGGAGGGAGTACGTTTTAGACTC 59.239 47.826 6.84 6.84 39.12 3.36
2291 2359 3.771216 TGGAGGGAGTACGTTTTAGACT 58.229 45.455 0.00 0.00 0.00 3.24
2292 2360 4.732672 ATGGAGGGAGTACGTTTTAGAC 57.267 45.455 0.00 0.00 0.00 2.59
2293 2361 4.161001 GGAATGGAGGGAGTACGTTTTAGA 59.839 45.833 0.00 0.00 0.00 2.10
2294 2362 4.081309 TGGAATGGAGGGAGTACGTTTTAG 60.081 45.833 0.00 0.00 0.00 1.85
2295 2363 3.839490 TGGAATGGAGGGAGTACGTTTTA 59.161 43.478 0.00 0.00 0.00 1.52
2296 2364 2.640826 TGGAATGGAGGGAGTACGTTTT 59.359 45.455 0.00 0.00 0.00 2.43
2297 2365 2.262637 TGGAATGGAGGGAGTACGTTT 58.737 47.619 0.00 0.00 0.00 3.60
2298 2366 1.946984 TGGAATGGAGGGAGTACGTT 58.053 50.000 0.00 0.00 0.00 3.99
2299 2367 1.946984 TTGGAATGGAGGGAGTACGT 58.053 50.000 0.00 0.00 0.00 3.57
2300 2368 3.343941 TTTTGGAATGGAGGGAGTACG 57.656 47.619 0.00 0.00 0.00 3.67
2301 2369 7.661847 CACTATATTTTGGAATGGAGGGAGTAC 59.338 40.741 0.00 0.00 0.00 2.73
2302 2370 7.691791 GCACTATATTTTGGAATGGAGGGAGTA 60.692 40.741 0.00 0.00 0.00 2.59
2303 2371 6.605119 CACTATATTTTGGAATGGAGGGAGT 58.395 40.000 0.00 0.00 0.00 3.85
2304 2372 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
2305 2373 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
2306 2374 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
2307 2375 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
2308 2376 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
2309 2377 3.568007 GGCGCACTATATTTTGGAATGGA 59.432 43.478 10.83 0.00 0.00 3.41
2310 2378 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
2311 2379 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
2312 2380 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
2313 2381 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
2314 2382 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
2315 2383 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
2316 2384 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
2317 2385 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
2318 2386 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
2333 2401 3.718210 ATTCGACCTCGGGAAGCGC 62.718 63.158 0.00 0.00 40.29 5.92
2334 2402 0.739813 AAATTCGACCTCGGGAAGCG 60.740 55.000 0.00 0.00 40.29 4.68
2335 2403 1.130561 CAAAATTCGACCTCGGGAAGC 59.869 52.381 0.00 0.00 40.29 3.86
2336 2404 2.415512 GTCAAAATTCGACCTCGGGAAG 59.584 50.000 0.00 0.00 40.29 3.46
2337 2405 2.419667 GTCAAAATTCGACCTCGGGAA 58.580 47.619 0.00 0.00 40.29 3.97
2338 2406 2.088950 GTCAAAATTCGACCTCGGGA 57.911 50.000 0.00 0.00 40.29 5.14
2345 2413 9.332301 TCGTTAAATTTATGGTCAAAATTCGAC 57.668 29.630 0.00 0.37 35.91 4.20
2346 2414 9.894783 TTCGTTAAATTTATGGTCAAAATTCGA 57.105 25.926 0.00 0.00 35.91 3.71
2347 2415 9.931710 GTTCGTTAAATTTATGGTCAAAATTCG 57.068 29.630 0.00 0.00 35.91 3.34
2348 2416 9.931710 CGTTCGTTAAATTTATGGTCAAAATTC 57.068 29.630 0.00 0.00 35.91 2.17
2349 2417 9.680315 TCGTTCGTTAAATTTATGGTCAAAATT 57.320 25.926 0.00 0.00 37.98 1.82
2350 2418 9.337091 CTCGTTCGTTAAATTTATGGTCAAAAT 57.663 29.630 0.00 0.00 0.00 1.82
2351 2419 8.557864 TCTCGTTCGTTAAATTTATGGTCAAAA 58.442 29.630 0.00 0.00 0.00 2.44
2352 2420 8.011106 GTCTCGTTCGTTAAATTTATGGTCAAA 58.989 33.333 0.00 0.00 0.00 2.69
2353 2421 7.360269 GGTCTCGTTCGTTAAATTTATGGTCAA 60.360 37.037 0.00 0.00 0.00 3.18
2354 2422 6.091169 GGTCTCGTTCGTTAAATTTATGGTCA 59.909 38.462 0.00 0.00 0.00 4.02
2355 2423 6.472680 GGTCTCGTTCGTTAAATTTATGGTC 58.527 40.000 0.00 0.00 0.00 4.02
2356 2424 5.062558 CGGTCTCGTTCGTTAAATTTATGGT 59.937 40.000 0.00 0.00 0.00 3.55
2357 2425 5.289193 TCGGTCTCGTTCGTTAAATTTATGG 59.711 40.000 0.00 0.00 37.69 2.74
2358 2426 6.034256 AGTCGGTCTCGTTCGTTAAATTTATG 59.966 38.462 0.00 0.00 37.69 1.90
2359 2427 6.034256 CAGTCGGTCTCGTTCGTTAAATTTAT 59.966 38.462 0.00 0.00 37.69 1.40
2360 2428 5.343058 CAGTCGGTCTCGTTCGTTAAATTTA 59.657 40.000 0.00 0.00 37.69 1.40
2361 2429 4.149396 CAGTCGGTCTCGTTCGTTAAATTT 59.851 41.667 0.00 0.00 37.69 1.82
2362 2430 3.671928 CAGTCGGTCTCGTTCGTTAAATT 59.328 43.478 0.00 0.00 37.69 1.82
2363 2431 3.240069 CAGTCGGTCTCGTTCGTTAAAT 58.760 45.455 0.00 0.00 37.69 1.40
2364 2432 2.653890 CAGTCGGTCTCGTTCGTTAAA 58.346 47.619 0.00 0.00 37.69 1.52
2365 2433 1.664016 GCAGTCGGTCTCGTTCGTTAA 60.664 52.381 0.00 0.00 37.69 2.01
2366 2434 0.110056 GCAGTCGGTCTCGTTCGTTA 60.110 55.000 0.00 0.00 37.69 3.18
2367 2435 1.371389 GCAGTCGGTCTCGTTCGTT 60.371 57.895 0.00 0.00 37.69 3.85
2368 2436 2.254651 GCAGTCGGTCTCGTTCGT 59.745 61.111 0.00 0.00 37.69 3.85
2369 2437 2.870161 CGCAGTCGGTCTCGTTCG 60.870 66.667 0.00 0.00 37.69 3.95
2380 2448 2.548295 TTTTTCACCCGCCGCAGTC 61.548 57.895 0.00 0.00 0.00 3.51
2381 2449 2.517402 TTTTTCACCCGCCGCAGT 60.517 55.556 0.00 0.00 0.00 4.40
2427 2495 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
2428 2496 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
2429 2497 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
2430 2498 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
2431 2499 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
2432 2500 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
2433 2501 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
2458 2526 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
2459 2527 5.813080 ATTTAACTACCAAGACCGATTGC 57.187 39.130 0.00 0.00 0.00 3.56
2460 2528 7.901377 CGTAAATTTAACTACCAAGACCGATTG 59.099 37.037 0.00 0.00 0.00 2.67
2461 2529 7.064966 CCGTAAATTTAACTACCAAGACCGATT 59.935 37.037 0.00 0.00 0.00 3.34
2462 2530 6.536224 CCGTAAATTTAACTACCAAGACCGAT 59.464 38.462 0.00 0.00 0.00 4.18
2463 2531 5.868801 CCGTAAATTTAACTACCAAGACCGA 59.131 40.000 0.00 0.00 0.00 4.69
2464 2532 5.639082 ACCGTAAATTTAACTACCAAGACCG 59.361 40.000 0.00 0.00 0.00 4.79
2465 2533 6.650390 TGACCGTAAATTTAACTACCAAGACC 59.350 38.462 0.00 0.00 0.00 3.85
2466 2534 7.656707 TGACCGTAAATTTAACTACCAAGAC 57.343 36.000 0.00 0.00 0.00 3.01
2467 2535 8.674263 TTTGACCGTAAATTTAACTACCAAGA 57.326 30.769 0.00 0.00 0.00 3.02
2468 2536 8.562052 ACTTTGACCGTAAATTTAACTACCAAG 58.438 33.333 0.00 2.45 0.00 3.61
2469 2537 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
2470 2538 8.344098 CAACTTTGACCGTAAATTTAACTACCA 58.656 33.333 0.00 0.00 0.00 3.25
2471 2539 8.558700 TCAACTTTGACCGTAAATTTAACTACC 58.441 33.333 0.00 0.00 31.01 3.18
2472 2540 9.934190 TTCAACTTTGACCGTAAATTTAACTAC 57.066 29.630 0.00 0.00 36.83 2.73
2474 2542 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
2475 2543 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
2476 2544 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
2477 2545 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
2478 2546 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
2479 2547 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
2480 2548 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
2481 2549 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
2482 2550 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
2483 2551 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
2484 2552 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
2485 2553 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.000 0.00 0.00 36.83 4.79
2486 2554 1.264288 CTCCGTGCTTCAACTTTGACC 59.736 52.381 0.00 0.00 36.83 4.02
2487 2555 2.210116 TCTCCGTGCTTCAACTTTGAC 58.790 47.619 0.00 0.00 36.83 3.18
2488 2556 2.613026 TCTCCGTGCTTCAACTTTGA 57.387 45.000 0.00 0.00 34.92 2.69
2489 2557 4.245660 TCTATCTCCGTGCTTCAACTTTG 58.754 43.478 0.00 0.00 0.00 2.77
2490 2558 4.499183 CTCTATCTCCGTGCTTCAACTTT 58.501 43.478 0.00 0.00 0.00 2.66
2491 2559 3.118956 CCTCTATCTCCGTGCTTCAACTT 60.119 47.826 0.00 0.00 0.00 2.66
2492 2560 2.428890 CCTCTATCTCCGTGCTTCAACT 59.571 50.000 0.00 0.00 0.00 3.16
2493 2561 2.427453 TCCTCTATCTCCGTGCTTCAAC 59.573 50.000 0.00 0.00 0.00 3.18
2494 2562 2.735151 TCCTCTATCTCCGTGCTTCAA 58.265 47.619 0.00 0.00 0.00 2.69
2495 2563 2.437085 TCCTCTATCTCCGTGCTTCA 57.563 50.000 0.00 0.00 0.00 3.02
2496 2564 2.544903 GCTTCCTCTATCTCCGTGCTTC 60.545 54.545 0.00 0.00 0.00 3.86
2497 2565 1.410882 GCTTCCTCTATCTCCGTGCTT 59.589 52.381 0.00 0.00 0.00 3.91
2498 2566 1.036707 GCTTCCTCTATCTCCGTGCT 58.963 55.000 0.00 0.00 0.00 4.40
2499 2567 0.747255 TGCTTCCTCTATCTCCGTGC 59.253 55.000 0.00 0.00 0.00 5.34
2500 2568 2.028130 AGTGCTTCCTCTATCTCCGTG 58.972 52.381 0.00 0.00 0.00 4.94
2501 2569 2.445682 AGTGCTTCCTCTATCTCCGT 57.554 50.000 0.00 0.00 0.00 4.69
2502 2570 3.215151 TGTAGTGCTTCCTCTATCTCCG 58.785 50.000 0.00 0.00 0.00 4.63
2503 2571 5.069781 ACAATGTAGTGCTTCCTCTATCTCC 59.930 44.000 0.00 0.00 0.00 3.71
2504 2572 5.982516 CACAATGTAGTGCTTCCTCTATCTC 59.017 44.000 0.00 0.00 32.04 2.75
2505 2573 5.163364 CCACAATGTAGTGCTTCCTCTATCT 60.163 44.000 0.00 0.00 38.18 1.98
2506 2574 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
2507 2575 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
2508 2576 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
2509 2577 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
2510 2578 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
2511 2579 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
2512 2580 3.129287 CCATTCCACAATGTAGTGCTTCC 59.871 47.826 0.00 0.00 38.22 3.46
2513 2581 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
2514 2582 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
2515 2583 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
2516 2584 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
2517 2585 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
2518 2586 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
2519 2587 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
2520 2588 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
2521 2589 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
2522 2590 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
2523 2591 6.590656 TTATTACTCCCTCCATTCCACAAT 57.409 37.500 0.00 0.00 0.00 2.71
2524 2592 6.395780 TTTATTACTCCCTCCATTCCACAA 57.604 37.500 0.00 0.00 0.00 3.33
2525 2593 6.159575 TCATTTATTACTCCCTCCATTCCACA 59.840 38.462 0.00 0.00 0.00 4.17
2526 2594 6.601332 TCATTTATTACTCCCTCCATTCCAC 58.399 40.000 0.00 0.00 0.00 4.02
2527 2595 6.840090 TCATTTATTACTCCCTCCATTCCA 57.160 37.500 0.00 0.00 0.00 3.53
2528 2596 7.229506 CACTTCATTTATTACTCCCTCCATTCC 59.770 40.741 0.00 0.00 0.00 3.01
2529 2597 7.993183 TCACTTCATTTATTACTCCCTCCATTC 59.007 37.037 0.00 0.00 0.00 2.67
2530 2598 7.872138 TCACTTCATTTATTACTCCCTCCATT 58.128 34.615 0.00 0.00 0.00 3.16
2531 2599 7.451731 TCACTTCATTTATTACTCCCTCCAT 57.548 36.000 0.00 0.00 0.00 3.41
2532 2600 6.884472 TCACTTCATTTATTACTCCCTCCA 57.116 37.500 0.00 0.00 0.00 3.86
2533 2601 6.205658 GCATCACTTCATTTATTACTCCCTCC 59.794 42.308 0.00 0.00 0.00 4.30
2534 2602 6.767902 TGCATCACTTCATTTATTACTCCCTC 59.232 38.462 0.00 0.00 0.00 4.30
2535 2603 6.662755 TGCATCACTTCATTTATTACTCCCT 58.337 36.000 0.00 0.00 0.00 4.20
2536 2604 6.942532 TGCATCACTTCATTTATTACTCCC 57.057 37.500 0.00 0.00 0.00 4.30
2537 2605 8.072567 GTCATGCATCACTTCATTTATTACTCC 58.927 37.037 0.00 0.00 0.00 3.85
2538 2606 8.615211 TGTCATGCATCACTTCATTTATTACTC 58.385 33.333 1.37 0.00 0.00 2.59
2539 2607 8.510243 TGTCATGCATCACTTCATTTATTACT 57.490 30.769 1.37 0.00 0.00 2.24
2542 2610 9.740239 GTTATGTCATGCATCACTTCATTTATT 57.260 29.630 1.37 0.00 38.94 1.40
2543 2611 8.905850 TGTTATGTCATGCATCACTTCATTTAT 58.094 29.630 1.37 0.00 38.94 1.40
2544 2612 8.183536 GTGTTATGTCATGCATCACTTCATTTA 58.816 33.333 1.37 0.00 38.94 1.40
2545 2613 7.031372 GTGTTATGTCATGCATCACTTCATTT 58.969 34.615 1.37 0.00 38.94 2.32
2546 2614 6.151480 TGTGTTATGTCATGCATCACTTCATT 59.849 34.615 1.37 0.00 38.94 2.57
2547 2615 5.648960 TGTGTTATGTCATGCATCACTTCAT 59.351 36.000 1.37 3.54 38.94 2.57
2548 2616 5.002516 TGTGTTATGTCATGCATCACTTCA 58.997 37.500 1.37 11.71 38.94 3.02
2549 2617 5.550232 TGTGTTATGTCATGCATCACTTC 57.450 39.130 1.37 10.25 38.94 3.01
2550 2618 7.812690 ATATGTGTTATGTCATGCATCACTT 57.187 32.000 1.37 0.00 38.94 3.16
2551 2619 9.511272 AATATATGTGTTATGTCATGCATCACT 57.489 29.630 1.37 0.00 38.94 3.41
2565 2633 9.423964 TCACAGTGGGTAGTAATATATGTGTTA 57.576 33.333 0.00 0.00 37.41 2.41
2566 2634 8.313944 TCACAGTGGGTAGTAATATATGTGTT 57.686 34.615 0.00 0.00 37.41 3.32
2567 2635 7.907841 TCACAGTGGGTAGTAATATATGTGT 57.092 36.000 0.00 0.00 37.41 3.72
2568 2636 8.638873 TCTTCACAGTGGGTAGTAATATATGTG 58.361 37.037 0.00 0.00 37.46 3.21
2569 2637 8.777578 TCTTCACAGTGGGTAGTAATATATGT 57.222 34.615 0.00 0.00 0.00 2.29
2574 2642 9.925545 TTACTATCTTCACAGTGGGTAGTAATA 57.074 33.333 14.25 0.75 31.76 0.98
2575 2643 8.693625 GTTACTATCTTCACAGTGGGTAGTAAT 58.306 37.037 18.36 0.00 36.29 1.89
2576 2644 7.670979 TGTTACTATCTTCACAGTGGGTAGTAA 59.329 37.037 14.25 14.25 33.33 2.24
2577 2645 7.177184 TGTTACTATCTTCACAGTGGGTAGTA 58.823 38.462 0.00 3.55 0.00 1.82
2578 2646 6.014647 TGTTACTATCTTCACAGTGGGTAGT 58.985 40.000 0.00 4.51 0.00 2.73
2579 2647 6.525578 TGTTACTATCTTCACAGTGGGTAG 57.474 41.667 0.00 0.00 0.00 3.18
2580 2648 8.057011 TCTATGTTACTATCTTCACAGTGGGTA 58.943 37.037 0.00 0.00 0.00 3.69
2581 2649 6.895756 TCTATGTTACTATCTTCACAGTGGGT 59.104 38.462 0.00 0.00 0.00 4.51
2582 2650 7.068839 AGTCTATGTTACTATCTTCACAGTGGG 59.931 40.741 0.00 0.00 0.00 4.61
2583 2651 8.001881 AGTCTATGTTACTATCTTCACAGTGG 57.998 38.462 0.00 0.00 0.00 4.00
2585 2653 9.908747 ACTAGTCTATGTTACTATCTTCACAGT 57.091 33.333 0.00 0.00 0.00 3.55
2624 2692 9.574516 AAGACTAATCACAATGGAAAGTAACTT 57.425 29.630 0.00 0.00 0.00 2.66
2629 2697 9.003658 CAACTAAGACTAATCACAATGGAAAGT 57.996 33.333 0.00 0.00 0.00 2.66
2630 2698 9.219603 TCAACTAAGACTAATCACAATGGAAAG 57.780 33.333 0.00 0.00 0.00 2.62
2631 2699 9.219603 CTCAACTAAGACTAATCACAATGGAAA 57.780 33.333 0.00 0.00 0.00 3.13
2632 2700 8.375506 ACTCAACTAAGACTAATCACAATGGAA 58.624 33.333 0.00 0.00 0.00 3.53
2633 2701 7.907389 ACTCAACTAAGACTAATCACAATGGA 58.093 34.615 0.00 0.00 0.00 3.41
2634 2702 9.088512 GTACTCAACTAAGACTAATCACAATGG 57.911 37.037 0.00 0.00 0.00 3.16
2635 2703 9.862371 AGTACTCAACTAAGACTAATCACAATG 57.138 33.333 0.00 0.00 36.36 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.