Multiple sequence alignment - TraesCS5D01G099800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G099800 chr5D 100.000 3367 0 0 2748 6114 112047560 112044194 0.000000e+00 6218.0
1 TraesCS5D01G099800 chr5D 100.000 2497 0 0 1 2497 112050307 112047811 0.000000e+00 4612.0
2 TraesCS5D01G099800 chr5D 100.000 67 0 0 5914 5980 112044343 112044277 2.310000e-24 124.0
3 TraesCS5D01G099800 chr5D 100.000 67 0 0 5965 6031 112044394 112044328 2.310000e-24 124.0
4 TraesCS5D01G099800 chr5D 100.000 57 0 0 2950 3006 112047298 112047242 8.380000e-19 106.0
5 TraesCS5D01G099800 chr5D 100.000 57 0 0 3010 3066 112047358 112047302 8.380000e-19 106.0
6 TraesCS5D01G099800 chr5A 95.656 2486 76 12 3047 5523 115021213 115018751 0.000000e+00 3964.0
7 TraesCS5D01G099800 chr5A 94.395 1463 57 7 1 1458 115026466 115025024 0.000000e+00 2224.0
8 TraesCS5D01G099800 chr5A 98.033 305 5 1 2748 3051 115024135 115023831 4.200000e-146 529.0
9 TraesCS5D01G099800 chr5A 85.957 470 49 8 5521 5980 115018639 115018177 2.560000e-133 486.0
10 TraesCS5D01G099800 chr5A 90.119 253 8 2 1451 1702 115024990 115024754 4.600000e-81 313.0
11 TraesCS5D01G099800 chr5A 92.715 151 10 1 5965 6114 115018244 115018094 3.710000e-52 217.0
12 TraesCS5D01G099800 chr5A 100.000 59 0 0 3008 3066 115023934 115023876 6.480000e-20 110.0
13 TraesCS5D01G099800 chr5A 100.000 42 0 0 2950 2991 115023872 115023831 1.830000e-10 78.7
14 TraesCS5D01G099800 chr5B 95.274 1608 59 8 3008 4599 121204099 121202493 0.000000e+00 2532.0
15 TraesCS5D01G099800 chr5B 94.418 1451 64 13 8 1458 121206307 121204874 0.000000e+00 2215.0
16 TraesCS5D01G099800 chr5B 94.941 929 32 5 4596 5523 121202257 121201343 0.000000e+00 1441.0
17 TraesCS5D01G099800 chr5B 93.696 460 28 1 5521 5980 121201262 121200804 0.000000e+00 688.0
18 TraesCS5D01G099800 chr5B 87.780 581 58 5 1519 2088 121204747 121204169 0.000000e+00 667.0
19 TraesCS5D01G099800 chr5B 91.447 152 3 2 5965 6114 121200870 121200727 3.740000e-47 200.0
20 TraesCS5D01G099800 chr7A 78.151 357 68 9 2096 2448 443177639 443177989 1.030000e-52 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G099800 chr5D 112044194 112050307 6113 True 1881.666667 6218 100.000000 1 6114 6 chr5D.!!$R1 6113
1 TraesCS5D01G099800 chr5A 115018094 115026466 8372 True 990.212500 3964 94.609375 1 6114 8 chr5A.!!$R1 6113
2 TraesCS5D01G099800 chr5B 121200727 121206307 5580 True 1290.500000 2532 92.926000 8 6114 6 chr5B.!!$R1 6106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
775 776 0.109735 GCAAAACCCTAAGCGACTGC 60.110 55.000 0.00 0.00 43.24 4.40 F
1666 1762 0.542805 TGGTAACGGTCCCTTATGCC 59.457 55.000 0.00 0.00 42.51 4.40 F
1858 1954 0.035152 CAACCTACATCCAGCCTGCA 60.035 55.000 0.00 0.00 0.00 4.41 F
2471 2578 0.041238 CCTCCACCAGTCTAGTCCCA 59.959 60.000 0.00 0.00 0.00 4.37 F
2474 2581 0.250513 CCACCAGTCTAGTCCCAAGC 59.749 60.000 0.00 0.00 0.00 4.01 F
2475 2582 0.976641 CACCAGTCTAGTCCCAAGCA 59.023 55.000 0.00 0.00 0.00 3.91 F
2812 2919 1.200484 TGTAAGTACGTCGCAGCATGA 59.800 47.619 0.00 0.00 39.69 3.07 F
4411 7155 1.292223 CCTGTACCGGTGACCACTG 59.708 63.158 19.93 11.19 37.44 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 1940 0.038021 TTTGCTGCAGGCTGGATGTA 59.962 50.000 17.12 4.47 42.39 2.29 R
2467 2574 2.091885 ACTTTTGGTCTCTTGCTTGGGA 60.092 45.455 0.00 0.00 0.00 4.37 R
3231 5961 3.243301 GGGTTAGACAGATCGCGTATTGA 60.243 47.826 5.77 0.00 0.00 2.57 R
3777 6521 3.265791 CTTAGAGCAGCAAAATCCTCGT 58.734 45.455 0.00 0.00 0.00 4.18 R
4433 7177 4.545610 GAGAAGACCTGATGAGCTTATCG 58.454 47.826 13.27 8.28 0.00 2.92 R
4650 7635 8.956533 ACAAACTTTGGCAATTAGTTTTACAT 57.043 26.923 21.48 9.53 39.40 2.29 R
4808 7794 2.405892 AGCAAACTGAACGCATCAAC 57.594 45.000 0.00 0.00 37.67 3.18 R
5979 9091 0.036388 GGGACCACGAGAAGCAATCA 60.036 55.000 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
264 265 4.117661 ACGAGCCGAACGGAGAGC 62.118 66.667 17.63 1.32 37.50 4.09
306 307 3.053849 GACCCTCTCGTCGACAGGC 62.054 68.421 17.16 0.00 0.00 4.85
336 337 1.600916 GGCCAGCTTGAAGTCGGTT 60.601 57.895 0.00 0.00 0.00 4.44
366 367 3.729356 GCTGTTCGAGCTCATCTCA 57.271 52.632 15.40 6.16 45.21 3.27
676 677 1.592400 CGTCTCCACCGCCTACTTCA 61.592 60.000 0.00 0.00 0.00 3.02
767 768 1.071814 ACGAGCCGCAAAACCCTAA 59.928 52.632 0.00 0.00 0.00 2.69
775 776 0.109735 GCAAAACCCTAAGCGACTGC 60.110 55.000 0.00 0.00 43.24 4.40
807 808 0.818938 GGAGGAGGAAGAAGACGGAC 59.181 60.000 0.00 0.00 0.00 4.79
864 865 3.188786 GCGCGGCCTCTACACAAG 61.189 66.667 8.83 0.00 0.00 3.16
865 866 2.571757 CGCGGCCTCTACACAAGA 59.428 61.111 0.00 0.00 0.00 3.02
866 867 1.805945 CGCGGCCTCTACACAAGAC 60.806 63.158 0.00 0.00 0.00 3.01
867 868 1.292223 GCGGCCTCTACACAAGACA 59.708 57.895 0.00 0.00 0.00 3.41
973 974 3.702048 CCCCGCGAGAACCTTCCA 61.702 66.667 8.23 0.00 0.00 3.53
1038 1044 2.997897 ACGCGGCCTCTCTTCCTT 60.998 61.111 12.47 0.00 0.00 3.36
1262 1268 0.869068 CGTGTGCCCGTAATTTGTGA 59.131 50.000 0.00 0.00 0.00 3.58
1269 1275 1.374560 CCGTAATTTGTGATGCGGGA 58.625 50.000 0.00 0.00 36.05 5.14
1305 1311 1.312371 TAGAGCGTTGGCATTTGGGC 61.312 55.000 0.00 0.00 43.41 5.36
1366 1372 3.557595 CCCTGAGCTTTGACGAATATCAC 59.442 47.826 0.00 0.00 0.00 3.06
1551 1647 3.873801 GCATGGGTAGATCCACAAGTGTT 60.874 47.826 0.00 0.00 39.97 3.32
1563 1659 3.737266 CCACAAGTGTTGTTTCATGATGC 59.263 43.478 0.00 0.00 43.23 3.91
1591 1687 1.140312 GGGCTGGATGGGATTCACTA 58.860 55.000 0.00 0.00 0.00 2.74
1654 1750 7.247728 TCTATTTTGCTAAAATGCTGGTAACG 58.752 34.615 13.65 0.00 41.01 3.18
1666 1762 0.542805 TGGTAACGGTCCCTTATGCC 59.457 55.000 0.00 0.00 42.51 4.40
1712 1808 6.989659 TCGTTTGGAAGAAAGACTACATAGT 58.010 36.000 0.00 0.00 39.71 2.12
1713 1809 8.114331 TCGTTTGGAAGAAAGACTACATAGTA 57.886 34.615 0.00 0.00 36.50 1.82
1724 1820 9.099454 GAAAGACTACATAGTATCCCAGTTTTG 57.901 37.037 0.00 0.00 36.50 2.44
1726 1822 8.147244 AGACTACATAGTATCCCAGTTTTGTT 57.853 34.615 0.00 0.00 36.50 2.83
1745 1841 4.783242 TGTTTGAAAGCGATGAAAGTAGC 58.217 39.130 0.00 0.00 0.00 3.58
1791 1887 1.633945 AGTAGGGCCCACGAAAAGAAT 59.366 47.619 27.56 0.25 0.00 2.40
1792 1888 2.841881 AGTAGGGCCCACGAAAAGAATA 59.158 45.455 27.56 0.00 0.00 1.75
1798 1894 2.711542 CCCACGAAAAGAATAGGCTGT 58.288 47.619 0.00 0.00 0.00 4.40
1813 1909 4.112634 AGGCTGTAAACCCTGAATTGAA 57.887 40.909 0.00 0.00 0.00 2.69
1825 1921 5.535030 ACCCTGAATTGAACAACTAGGAAAC 59.465 40.000 12.10 0.00 0.00 2.78
1830 1926 3.502123 TGAACAACTAGGAAACCAGGG 57.498 47.619 0.00 0.00 0.00 4.45
1832 1928 2.951229 ACAACTAGGAAACCAGGGTG 57.049 50.000 0.00 0.00 0.00 4.61
1850 1946 1.539827 GTGCAACACCAACCTACATCC 59.460 52.381 0.00 0.00 36.32 3.51
1858 1954 0.035152 CAACCTACATCCAGCCTGCA 60.035 55.000 0.00 0.00 0.00 4.41
1873 1969 1.662629 CCTGCAGCAAATAGACTGACG 59.337 52.381 8.66 0.00 35.90 4.35
1939 2046 3.888930 ACAGACCCATAAACAACTGTTGG 59.111 43.478 23.15 6.25 38.44 3.77
2018 2125 1.667830 CTCCTTCGGTTGCTTGCGA 60.668 57.895 0.00 0.00 0.00 5.10
2044 2151 3.873805 GCAGGAAGCAACAAACTCC 57.126 52.632 0.00 0.00 44.79 3.85
2045 2152 1.032014 GCAGGAAGCAACAAACTCCA 58.968 50.000 0.00 0.00 44.79 3.86
2060 2167 1.617322 CTCCATTGATGCATGGGAGG 58.383 55.000 18.73 10.53 41.12 4.30
2063 2170 1.133575 CCATTGATGCATGGGAGGAGT 60.134 52.381 2.46 0.00 34.39 3.85
2065 2172 3.144506 CATTGATGCATGGGAGGAGTAC 58.855 50.000 2.46 0.00 0.00 2.73
2074 2181 5.073554 TGCATGGGAGGAGTACAATATCAAT 59.926 40.000 0.00 0.00 0.00 2.57
2075 2182 5.645497 GCATGGGAGGAGTACAATATCAATC 59.355 44.000 0.00 0.00 0.00 2.67
2076 2183 6.521427 GCATGGGAGGAGTACAATATCAATCT 60.521 42.308 0.00 0.00 0.00 2.40
2079 2186 6.268617 TGGGAGGAGTACAATATCAATCTCTG 59.731 42.308 0.00 0.00 0.00 3.35
2080 2187 6.495181 GGGAGGAGTACAATATCAATCTCTGA 59.505 42.308 0.00 0.00 38.81 3.27
2081 2188 7.309744 GGGAGGAGTACAATATCAATCTCTGAG 60.310 44.444 0.00 0.00 37.52 3.35
2082 2189 6.991938 AGGAGTACAATATCAATCTCTGAGC 58.008 40.000 0.00 0.00 37.52 4.26
2083 2190 6.552725 AGGAGTACAATATCAATCTCTGAGCA 59.447 38.462 0.00 0.00 37.52 4.26
2084 2191 6.644592 GGAGTACAATATCAATCTCTGAGCAC 59.355 42.308 0.00 0.00 37.52 4.40
2085 2192 6.520272 AGTACAATATCAATCTCTGAGCACC 58.480 40.000 0.00 0.00 37.52 5.01
2088 2195 6.363065 ACAATATCAATCTCTGAGCACCATT 58.637 36.000 0.00 0.00 37.52 3.16
2089 2196 6.832384 ACAATATCAATCTCTGAGCACCATTT 59.168 34.615 0.00 0.00 37.52 2.32
2090 2197 7.341256 ACAATATCAATCTCTGAGCACCATTTT 59.659 33.333 0.00 0.00 37.52 1.82
2091 2198 7.893124 ATATCAATCTCTGAGCACCATTTTT 57.107 32.000 0.00 0.00 37.52 1.94
2122 2229 9.905713 ACATAAAGATTTATTCAACTAGGAGCA 57.094 29.630 0.00 0.00 31.28 4.26
2131 2238 9.733556 TTTATTCAACTAGGAGCATTTTACAGA 57.266 29.630 0.00 0.00 0.00 3.41
2133 2240 8.635765 ATTCAACTAGGAGCATTTTACAGAAA 57.364 30.769 0.00 0.00 0.00 2.52
2134 2241 7.672983 TCAACTAGGAGCATTTTACAGAAAG 57.327 36.000 0.00 0.00 0.00 2.62
2135 2242 7.450074 TCAACTAGGAGCATTTTACAGAAAGA 58.550 34.615 0.00 0.00 0.00 2.52
2139 2246 5.072741 AGGAGCATTTTACAGAAAGAAGCA 58.927 37.500 0.00 0.00 0.00 3.91
2140 2247 5.713861 AGGAGCATTTTACAGAAAGAAGCAT 59.286 36.000 0.00 0.00 0.00 3.79
2142 2249 6.349611 GGAGCATTTTACAGAAAGAAGCATGA 60.350 38.462 0.00 0.00 0.00 3.07
2143 2250 6.985117 AGCATTTTACAGAAAGAAGCATGAA 58.015 32.000 0.00 0.00 0.00 2.57
2144 2251 7.436118 AGCATTTTACAGAAAGAAGCATGAAA 58.564 30.769 0.00 0.00 0.00 2.69
2146 2253 7.148689 GCATTTTACAGAAAGAAGCATGAAAGG 60.149 37.037 0.00 0.00 0.00 3.11
2147 2254 6.959639 TTTACAGAAAGAAGCATGAAAGGT 57.040 33.333 0.00 0.00 0.00 3.50
2148 2255 8.458573 TTTTACAGAAAGAAGCATGAAAGGTA 57.541 30.769 0.00 0.00 0.00 3.08
2149 2256 8.458573 TTTACAGAAAGAAGCATGAAAGGTAA 57.541 30.769 0.00 0.00 0.00 2.85
2150 2257 6.319141 ACAGAAAGAAGCATGAAAGGTAAC 57.681 37.500 0.00 0.00 0.00 2.50
2151 2258 5.827797 ACAGAAAGAAGCATGAAAGGTAACA 59.172 36.000 0.00 0.00 41.41 2.41
2153 2260 5.827797 AGAAAGAAGCATGAAAGGTAACACA 59.172 36.000 0.00 0.00 41.41 3.72
2154 2261 5.438761 AAGAAGCATGAAAGGTAACACAC 57.561 39.130 0.00 0.00 41.41 3.82
2155 2262 4.718961 AGAAGCATGAAAGGTAACACACT 58.281 39.130 0.00 0.00 41.41 3.55
2156 2263 4.516698 AGAAGCATGAAAGGTAACACACTG 59.483 41.667 0.00 0.00 41.41 3.66
2157 2264 3.149196 AGCATGAAAGGTAACACACTGG 58.851 45.455 0.00 0.00 41.41 4.00
2159 2266 3.758554 GCATGAAAGGTAACACACTGGAT 59.241 43.478 0.00 0.00 41.41 3.41
2160 2267 4.941263 GCATGAAAGGTAACACACTGGATA 59.059 41.667 0.00 0.00 41.41 2.59
2161 2268 5.163754 GCATGAAAGGTAACACACTGGATAC 60.164 44.000 0.00 0.00 41.41 2.24
2179 2286 5.429762 TGGATACAGTGAGAATTTCCCTGAT 59.570 40.000 12.60 5.06 46.17 2.90
2180 2287 6.069440 TGGATACAGTGAGAATTTCCCTGATT 60.069 38.462 12.60 3.19 46.17 2.57
2181 2288 6.261826 GGATACAGTGAGAATTTCCCTGATTG 59.738 42.308 12.60 0.69 0.00 2.67
2182 2289 4.338879 ACAGTGAGAATTTCCCTGATTGG 58.661 43.478 12.60 0.00 0.00 3.16
2183 2290 4.043310 ACAGTGAGAATTTCCCTGATTGGA 59.957 41.667 12.60 0.00 38.35 3.53
2185 2292 4.043310 AGTGAGAATTTCCCTGATTGGACA 59.957 41.667 0.00 0.00 38.35 4.02
2186 2293 4.766891 GTGAGAATTTCCCTGATTGGACAA 59.233 41.667 0.00 0.00 38.35 3.18
2189 2296 5.397360 AGAATTTCCCTGATTGGACAAAGT 58.603 37.500 0.00 0.00 38.35 2.66
2190 2297 5.478332 AGAATTTCCCTGATTGGACAAAGTC 59.522 40.000 0.00 0.00 38.35 3.01
2208 2315 8.950208 ACAAAGTCCTATATCTGAGCTTAAAC 57.050 34.615 0.00 0.00 0.00 2.01
2209 2316 8.540388 ACAAAGTCCTATATCTGAGCTTAAACA 58.460 33.333 0.00 0.00 0.00 2.83
2210 2317 9.383519 CAAAGTCCTATATCTGAGCTTAAACAA 57.616 33.333 0.00 0.00 0.00 2.83
2212 2319 9.553064 AAGTCCTATATCTGAGCTTAAACAATG 57.447 33.333 0.00 0.00 0.00 2.82
2213 2320 8.928448 AGTCCTATATCTGAGCTTAAACAATGA 58.072 33.333 0.00 0.00 0.00 2.57
2214 2321 9.547753 GTCCTATATCTGAGCTTAAACAATGAA 57.452 33.333 0.00 0.00 0.00 2.57
2224 2331 9.474920 TGAGCTTAAACAATGAAACATTAAAGG 57.525 29.630 0.00 0.00 0.00 3.11
2226 2333 9.476202 AGCTTAAACAATGAAACATTAAAGGTC 57.524 29.630 0.00 0.00 0.00 3.85
2227 2334 9.476202 GCTTAAACAATGAAACATTAAAGGTCT 57.524 29.630 0.00 0.00 0.00 3.85
2234 2341 9.294030 CAATGAAACATTAAAGGTCTATTCTGC 57.706 33.333 0.00 0.00 0.00 4.26
2237 2344 7.669722 TGAAACATTAAAGGTCTATTCTGCCTT 59.330 33.333 0.00 0.00 43.75 4.35
2239 2346 8.422577 AACATTAAAGGTCTATTCTGCCTTTT 57.577 30.769 12.20 0.00 46.81 2.27
2240 2347 8.422577 ACATTAAAGGTCTATTCTGCCTTTTT 57.577 30.769 12.20 0.36 46.81 1.94
2241 2348 9.528489 ACATTAAAGGTCTATTCTGCCTTTTTA 57.472 29.630 12.20 3.55 46.81 1.52
2245 2352 6.516739 AGGTCTATTCTGCCTTTTTAAAGC 57.483 37.500 0.00 0.00 34.69 3.51
2246 2353 6.249192 AGGTCTATTCTGCCTTTTTAAAGCT 58.751 36.000 0.00 0.00 34.69 3.74
2247 2354 7.402862 AGGTCTATTCTGCCTTTTTAAAGCTA 58.597 34.615 0.00 0.00 34.69 3.32
2248 2355 7.554476 AGGTCTATTCTGCCTTTTTAAAGCTAG 59.446 37.037 0.00 0.00 34.69 3.42
2249 2356 7.190191 GTCTATTCTGCCTTTTTAAAGCTAGC 58.810 38.462 6.62 6.62 34.69 3.42
2250 2357 4.783764 TTCTGCCTTTTTAAAGCTAGCC 57.216 40.909 12.13 0.00 34.69 3.93
2251 2358 4.034285 TCTGCCTTTTTAAAGCTAGCCT 57.966 40.909 12.13 1.01 34.69 4.58
2252 2359 4.407365 TCTGCCTTTTTAAAGCTAGCCTT 58.593 39.130 12.13 7.57 34.69 4.35
2253 2360 4.218417 TCTGCCTTTTTAAAGCTAGCCTTG 59.782 41.667 12.13 0.00 34.69 3.61
2254 2361 4.148838 TGCCTTTTTAAAGCTAGCCTTGA 58.851 39.130 12.13 0.00 34.69 3.02
2255 2362 4.586841 TGCCTTTTTAAAGCTAGCCTTGAA 59.413 37.500 12.13 5.02 34.69 2.69
2256 2363 5.069781 TGCCTTTTTAAAGCTAGCCTTGAAA 59.930 36.000 12.13 11.41 33.03 2.69
2257 2364 5.635280 GCCTTTTTAAAGCTAGCCTTGAAAG 59.365 40.000 12.13 17.26 35.72 2.62
2258 2365 6.516693 GCCTTTTTAAAGCTAGCCTTGAAAGA 60.517 38.462 24.07 13.96 35.72 2.52
2259 2366 7.606349 CCTTTTTAAAGCTAGCCTTGAAAGAT 58.394 34.615 24.07 1.22 35.72 2.40
2260 2367 7.543520 CCTTTTTAAAGCTAGCCTTGAAAGATG 59.456 37.037 24.07 15.41 35.72 2.90
2261 2368 7.759489 TTTTAAAGCTAGCCTTGAAAGATGA 57.241 32.000 12.13 0.00 35.72 2.92
2262 2369 7.944729 TTTAAAGCTAGCCTTGAAAGATGAT 57.055 32.000 12.13 0.00 30.45 2.45
2263 2370 5.831702 AAAGCTAGCCTTGAAAGATGATG 57.168 39.130 12.13 0.00 33.01 3.07
2264 2371 4.767578 AGCTAGCCTTGAAAGATGATGA 57.232 40.909 12.13 0.00 0.00 2.92
2265 2372 4.706035 AGCTAGCCTTGAAAGATGATGAG 58.294 43.478 12.13 0.00 0.00 2.90
2266 2373 3.250521 GCTAGCCTTGAAAGATGATGAGC 59.749 47.826 2.29 0.00 0.00 4.26
2267 2374 2.652590 AGCCTTGAAAGATGATGAGCC 58.347 47.619 0.00 0.00 0.00 4.70
2268 2375 2.241685 AGCCTTGAAAGATGATGAGCCT 59.758 45.455 0.00 0.00 0.00 4.58
2269 2376 3.022406 GCCTTGAAAGATGATGAGCCTT 58.978 45.455 0.00 0.00 0.00 4.35
2270 2377 3.181489 GCCTTGAAAGATGATGAGCCTTG 60.181 47.826 0.00 0.00 0.00 3.61
2271 2378 4.267536 CCTTGAAAGATGATGAGCCTTGA 58.732 43.478 0.00 0.00 0.00 3.02
2272 2379 4.096081 CCTTGAAAGATGATGAGCCTTGAC 59.904 45.833 0.00 0.00 0.00 3.18
2273 2380 3.264947 TGAAAGATGATGAGCCTTGACG 58.735 45.455 0.00 0.00 0.00 4.35
2274 2381 3.265791 GAAAGATGATGAGCCTTGACGT 58.734 45.455 0.00 0.00 0.00 4.34
2275 2382 3.340814 AAGATGATGAGCCTTGACGTT 57.659 42.857 0.00 0.00 0.00 3.99
2276 2383 2.625737 AGATGATGAGCCTTGACGTTG 58.374 47.619 0.00 0.00 0.00 4.10
2277 2384 2.234661 AGATGATGAGCCTTGACGTTGA 59.765 45.455 0.00 0.00 0.00 3.18
2278 2385 2.768253 TGATGAGCCTTGACGTTGAT 57.232 45.000 0.00 0.00 0.00 2.57
2279 2386 3.057969 TGATGAGCCTTGACGTTGATT 57.942 42.857 0.00 0.00 0.00 2.57
2280 2387 3.002791 TGATGAGCCTTGACGTTGATTC 58.997 45.455 0.00 0.00 0.00 2.52
2281 2388 1.808411 TGAGCCTTGACGTTGATTCC 58.192 50.000 0.00 0.00 0.00 3.01
2282 2389 1.347707 TGAGCCTTGACGTTGATTCCT 59.652 47.619 0.00 0.00 0.00 3.36
2283 2390 2.003301 GAGCCTTGACGTTGATTCCTC 58.997 52.381 0.00 0.00 0.00 3.71
2284 2391 1.625818 AGCCTTGACGTTGATTCCTCT 59.374 47.619 0.00 0.00 0.00 3.69
2285 2392 1.734465 GCCTTGACGTTGATTCCTCTG 59.266 52.381 0.00 0.00 0.00 3.35
2286 2393 2.872038 GCCTTGACGTTGATTCCTCTGT 60.872 50.000 0.00 0.00 0.00 3.41
2287 2394 3.403038 CCTTGACGTTGATTCCTCTGTT 58.597 45.455 0.00 0.00 0.00 3.16
2288 2395 4.566004 CCTTGACGTTGATTCCTCTGTTA 58.434 43.478 0.00 0.00 0.00 2.41
2289 2396 4.994852 CCTTGACGTTGATTCCTCTGTTAA 59.005 41.667 0.00 0.00 0.00 2.01
2290 2397 5.643777 CCTTGACGTTGATTCCTCTGTTAAT 59.356 40.000 0.00 0.00 0.00 1.40
2291 2398 6.402550 CCTTGACGTTGATTCCTCTGTTAATG 60.403 42.308 0.00 0.00 0.00 1.90
2292 2399 5.547465 TGACGTTGATTCCTCTGTTAATGT 58.453 37.500 0.00 0.00 0.00 2.71
2293 2400 5.408299 TGACGTTGATTCCTCTGTTAATGTG 59.592 40.000 0.00 0.00 0.00 3.21
2294 2401 5.547465 ACGTTGATTCCTCTGTTAATGTGA 58.453 37.500 0.00 0.00 0.00 3.58
2295 2402 5.639506 ACGTTGATTCCTCTGTTAATGTGAG 59.360 40.000 0.00 0.00 0.00 3.51
2296 2403 5.869344 CGTTGATTCCTCTGTTAATGTGAGA 59.131 40.000 0.00 0.00 0.00 3.27
2297 2404 6.368791 CGTTGATTCCTCTGTTAATGTGAGAA 59.631 38.462 0.00 0.00 0.00 2.87
2298 2405 7.095229 CGTTGATTCCTCTGTTAATGTGAGAAA 60.095 37.037 0.00 0.00 0.00 2.52
2299 2406 7.672983 TGATTCCTCTGTTAATGTGAGAAAC 57.327 36.000 0.00 0.00 0.00 2.78
2300 2407 6.655003 TGATTCCTCTGTTAATGTGAGAAACC 59.345 38.462 0.00 0.00 0.00 3.27
2301 2408 4.906618 TCCTCTGTTAATGTGAGAAACCC 58.093 43.478 0.00 0.00 0.00 4.11
2302 2409 4.597507 TCCTCTGTTAATGTGAGAAACCCT 59.402 41.667 0.00 0.00 0.00 4.34
2303 2410 4.697352 CCTCTGTTAATGTGAGAAACCCTG 59.303 45.833 0.00 0.00 0.00 4.45
2304 2411 4.072131 TCTGTTAATGTGAGAAACCCTGC 58.928 43.478 0.00 0.00 0.00 4.85
2305 2412 4.074970 CTGTTAATGTGAGAAACCCTGCT 58.925 43.478 0.00 0.00 0.00 4.24
2306 2413 4.469657 TGTTAATGTGAGAAACCCTGCTT 58.530 39.130 0.00 0.00 0.00 3.91
2307 2414 4.518970 TGTTAATGTGAGAAACCCTGCTTC 59.481 41.667 0.00 0.00 0.00 3.86
2308 2415 3.515602 AATGTGAGAAACCCTGCTTCT 57.484 42.857 0.00 0.00 35.82 2.85
2309 2416 2.550830 TGTGAGAAACCCTGCTTCTC 57.449 50.000 5.86 5.86 46.02 2.87
2310 2417 2.050144 TGTGAGAAACCCTGCTTCTCT 58.950 47.619 12.32 0.00 46.01 3.10
2311 2418 2.224378 TGTGAGAAACCCTGCTTCTCTG 60.224 50.000 12.32 0.00 46.01 3.35
2312 2419 2.037772 GTGAGAAACCCTGCTTCTCTGA 59.962 50.000 12.32 0.00 46.01 3.27
2313 2420 2.705658 TGAGAAACCCTGCTTCTCTGAA 59.294 45.455 12.32 0.00 46.01 3.02
2314 2421 3.136443 TGAGAAACCCTGCTTCTCTGAAA 59.864 43.478 12.32 0.00 46.01 2.69
2315 2422 4.137543 GAGAAACCCTGCTTCTCTGAAAA 58.862 43.478 5.61 0.00 43.62 2.29
2316 2423 4.140536 AGAAACCCTGCTTCTCTGAAAAG 58.859 43.478 0.00 0.00 0.00 2.27
2317 2424 3.864789 AACCCTGCTTCTCTGAAAAGA 57.135 42.857 0.00 0.00 0.00 2.52
2318 2425 3.864789 ACCCTGCTTCTCTGAAAAGAA 57.135 42.857 0.00 0.00 34.22 2.52
2327 2434 6.538189 CTTCTCTGAAAAGAAGGACTGTTC 57.462 41.667 5.87 0.00 45.61 3.18
2328 2435 5.878406 TCTCTGAAAAGAAGGACTGTTCT 57.122 39.130 0.00 0.00 41.89 3.01
2329 2436 5.605534 TCTCTGAAAAGAAGGACTGTTCTG 58.394 41.667 0.00 0.00 41.89 3.02
2330 2437 5.129485 TCTCTGAAAAGAAGGACTGTTCTGT 59.871 40.000 0.00 0.00 41.89 3.41
2331 2438 6.323996 TCTCTGAAAAGAAGGACTGTTCTGTA 59.676 38.462 0.00 0.00 41.89 2.74
2332 2439 7.015682 TCTCTGAAAAGAAGGACTGTTCTGTAT 59.984 37.037 0.00 0.00 41.89 2.29
2333 2440 7.155328 TCTGAAAAGAAGGACTGTTCTGTATC 58.845 38.462 0.00 0.00 41.89 2.24
2334 2441 7.015682 TCTGAAAAGAAGGACTGTTCTGTATCT 59.984 37.037 0.00 0.00 41.89 1.98
2335 2442 6.931281 TGAAAAGAAGGACTGTTCTGTATCTG 59.069 38.462 0.00 0.00 41.89 2.90
2336 2443 6.672266 AAAGAAGGACTGTTCTGTATCTGA 57.328 37.500 0.00 0.00 36.86 3.27
2337 2444 5.913137 AGAAGGACTGTTCTGTATCTGAG 57.087 43.478 0.00 0.00 35.37 3.35
2338 2445 4.159506 AGAAGGACTGTTCTGTATCTGAGC 59.840 45.833 0.00 0.00 35.37 4.26
2339 2446 3.707316 AGGACTGTTCTGTATCTGAGCT 58.293 45.455 0.00 0.00 0.00 4.09
2340 2447 4.861196 AGGACTGTTCTGTATCTGAGCTA 58.139 43.478 0.00 0.00 0.00 3.32
2341 2448 5.454062 AGGACTGTTCTGTATCTGAGCTAT 58.546 41.667 0.00 0.00 0.00 2.97
2342 2449 5.534654 AGGACTGTTCTGTATCTGAGCTATC 59.465 44.000 0.00 0.00 0.00 2.08
2343 2450 5.300539 GGACTGTTCTGTATCTGAGCTATCA 59.699 44.000 0.00 0.00 0.00 2.15
2344 2451 6.183360 GGACTGTTCTGTATCTGAGCTATCAA 60.183 42.308 0.00 0.00 34.23 2.57
2345 2452 7.175347 ACTGTTCTGTATCTGAGCTATCAAA 57.825 36.000 0.00 0.00 34.23 2.69
2346 2453 7.264221 ACTGTTCTGTATCTGAGCTATCAAAG 58.736 38.462 0.00 0.00 34.23 2.77
2347 2454 6.577103 TGTTCTGTATCTGAGCTATCAAAGG 58.423 40.000 0.00 0.00 34.23 3.11
2348 2455 5.207110 TCTGTATCTGAGCTATCAAAGGC 57.793 43.478 0.00 0.00 34.23 4.35
2349 2456 4.039730 TCTGTATCTGAGCTATCAAAGGCC 59.960 45.833 0.00 0.00 34.23 5.19
2350 2457 3.969976 TGTATCTGAGCTATCAAAGGCCT 59.030 43.478 0.00 0.00 34.23 5.19
2351 2458 2.996249 TCTGAGCTATCAAAGGCCTG 57.004 50.000 5.69 0.00 34.23 4.85
2352 2459 2.191400 TCTGAGCTATCAAAGGCCTGT 58.809 47.619 5.69 0.00 34.23 4.00
2353 2460 2.573462 TCTGAGCTATCAAAGGCCTGTT 59.427 45.455 5.69 0.00 34.23 3.16
2354 2461 3.009473 TCTGAGCTATCAAAGGCCTGTTT 59.991 43.478 5.69 0.00 34.23 2.83
2355 2462 3.760684 CTGAGCTATCAAAGGCCTGTTTT 59.239 43.478 5.69 0.00 34.23 2.43
2356 2463 3.758554 TGAGCTATCAAAGGCCTGTTTTC 59.241 43.478 5.69 0.00 30.61 2.29
2357 2464 3.092301 AGCTATCAAAGGCCTGTTTTCC 58.908 45.455 5.69 0.00 0.00 3.13
2358 2465 2.166459 GCTATCAAAGGCCTGTTTTCCC 59.834 50.000 5.69 0.00 0.00 3.97
2359 2466 2.397044 ATCAAAGGCCTGTTTTCCCA 57.603 45.000 5.69 0.00 0.00 4.37
2360 2467 1.703411 TCAAAGGCCTGTTTTCCCAG 58.297 50.000 5.69 0.00 0.00 4.45
2361 2468 1.063266 TCAAAGGCCTGTTTTCCCAGT 60.063 47.619 5.69 0.00 0.00 4.00
2362 2469 1.069049 CAAAGGCCTGTTTTCCCAGTG 59.931 52.381 5.69 0.00 0.00 3.66
2363 2470 0.261696 AAGGCCTGTTTTCCCAGTGT 59.738 50.000 5.69 0.00 0.00 3.55
2364 2471 0.178990 AGGCCTGTTTTCCCAGTGTC 60.179 55.000 3.11 0.00 0.00 3.67
2365 2472 1.179174 GGCCTGTTTTCCCAGTGTCC 61.179 60.000 0.00 0.00 0.00 4.02
2366 2473 0.178990 GCCTGTTTTCCCAGTGTCCT 60.179 55.000 0.00 0.00 0.00 3.85
2367 2474 1.609208 CCTGTTTTCCCAGTGTCCTG 58.391 55.000 0.00 0.00 38.50 3.86
2375 2482 2.575993 CAGTGTCCTGGAGCGGAG 59.424 66.667 0.00 0.00 34.90 4.63
2376 2483 1.979155 CAGTGTCCTGGAGCGGAGA 60.979 63.158 0.00 0.00 34.90 3.71
2377 2484 1.680651 AGTGTCCTGGAGCGGAGAG 60.681 63.158 0.00 0.00 32.70 3.20
2378 2485 1.679305 GTGTCCTGGAGCGGAGAGA 60.679 63.158 0.00 0.00 32.70 3.10
2379 2486 1.076727 TGTCCTGGAGCGGAGAGAA 59.923 57.895 0.00 0.00 32.70 2.87
2380 2487 0.324738 TGTCCTGGAGCGGAGAGAAT 60.325 55.000 0.00 0.00 32.70 2.40
2381 2488 0.103937 GTCCTGGAGCGGAGAGAATG 59.896 60.000 0.00 0.00 32.70 2.67
2382 2489 0.324738 TCCTGGAGCGGAGAGAATGT 60.325 55.000 0.00 0.00 0.00 2.71
2383 2490 0.539051 CCTGGAGCGGAGAGAATGTT 59.461 55.000 0.00 0.00 0.00 2.71
2384 2491 1.065854 CCTGGAGCGGAGAGAATGTTT 60.066 52.381 0.00 0.00 0.00 2.83
2385 2492 2.005451 CTGGAGCGGAGAGAATGTTTG 58.995 52.381 0.00 0.00 0.00 2.93
2386 2493 1.347707 TGGAGCGGAGAGAATGTTTGT 59.652 47.619 0.00 0.00 0.00 2.83
2387 2494 2.003301 GGAGCGGAGAGAATGTTTGTC 58.997 52.381 0.00 0.00 0.00 3.18
2388 2495 1.656095 GAGCGGAGAGAATGTTTGTCG 59.344 52.381 0.00 0.00 0.00 4.35
2389 2496 0.095417 GCGGAGAGAATGTTTGTCGC 59.905 55.000 0.00 0.00 35.34 5.19
2390 2497 1.714794 CGGAGAGAATGTTTGTCGCT 58.285 50.000 0.00 0.00 0.00 4.93
2391 2498 2.069273 CGGAGAGAATGTTTGTCGCTT 58.931 47.619 0.00 0.00 0.00 4.68
2392 2499 2.480419 CGGAGAGAATGTTTGTCGCTTT 59.520 45.455 0.00 0.00 0.00 3.51
2393 2500 3.058914 CGGAGAGAATGTTTGTCGCTTTT 60.059 43.478 0.00 0.00 0.00 2.27
2394 2501 4.222114 GGAGAGAATGTTTGTCGCTTTTG 58.778 43.478 0.00 0.00 0.00 2.44
2395 2502 4.261197 GGAGAGAATGTTTGTCGCTTTTGT 60.261 41.667 0.00 0.00 0.00 2.83
2396 2503 5.248870 AGAGAATGTTTGTCGCTTTTGTT 57.751 34.783 0.00 0.00 0.00 2.83
2397 2504 5.036737 AGAGAATGTTTGTCGCTTTTGTTG 58.963 37.500 0.00 0.00 0.00 3.33
2398 2505 3.551485 AGAATGTTTGTCGCTTTTGTTGC 59.449 39.130 0.00 0.00 0.00 4.17
2399 2506 2.645730 TGTTTGTCGCTTTTGTTGCT 57.354 40.000 0.00 0.00 0.00 3.91
2400 2507 2.257894 TGTTTGTCGCTTTTGTTGCTG 58.742 42.857 0.00 0.00 0.00 4.41
2401 2508 2.095008 TGTTTGTCGCTTTTGTTGCTGA 60.095 40.909 0.00 0.00 0.00 4.26
2402 2509 2.920490 GTTTGTCGCTTTTGTTGCTGAA 59.080 40.909 0.00 0.00 0.00 3.02
2403 2510 2.473530 TGTCGCTTTTGTTGCTGAAG 57.526 45.000 0.00 0.00 0.00 3.02
2404 2511 1.065401 TGTCGCTTTTGTTGCTGAAGG 59.935 47.619 0.00 0.00 0.00 3.46
2405 2512 1.333619 GTCGCTTTTGTTGCTGAAGGA 59.666 47.619 0.00 0.00 0.00 3.36
2406 2513 2.020720 TCGCTTTTGTTGCTGAAGGAA 58.979 42.857 0.00 0.00 0.00 3.36
2407 2514 2.033299 TCGCTTTTGTTGCTGAAGGAAG 59.967 45.455 0.00 0.00 0.00 3.46
2408 2515 2.130395 GCTTTTGTTGCTGAAGGAAGC 58.870 47.619 0.00 0.00 43.82 3.86
2416 2523 1.597742 GCTGAAGGAAGCACTGAACA 58.402 50.000 0.00 0.00 43.01 3.18
2417 2524 1.949525 GCTGAAGGAAGCACTGAACAA 59.050 47.619 0.00 0.00 43.01 2.83
2418 2525 2.555757 GCTGAAGGAAGCACTGAACAAT 59.444 45.455 0.00 0.00 43.01 2.71
2419 2526 3.365767 GCTGAAGGAAGCACTGAACAATC 60.366 47.826 0.00 0.00 43.01 2.67
2420 2527 4.070716 CTGAAGGAAGCACTGAACAATCT 58.929 43.478 0.00 0.00 0.00 2.40
2421 2528 3.817084 TGAAGGAAGCACTGAACAATCTG 59.183 43.478 0.00 0.00 0.00 2.90
2422 2529 3.498774 AGGAAGCACTGAACAATCTGT 57.501 42.857 0.00 0.00 38.15 3.41
2433 2540 7.199541 ACTGAACAATCTGTGAGAAATTGAG 57.800 36.000 1.65 0.00 36.50 3.02
2434 2541 6.206243 ACTGAACAATCTGTGAGAAATTGAGG 59.794 38.462 1.65 0.00 36.50 3.86
2435 2542 6.298361 TGAACAATCTGTGAGAAATTGAGGA 58.702 36.000 1.65 0.00 35.03 3.71
2441 2548 4.080695 TCTGTGAGAAATTGAGGATCCTGG 60.081 45.833 22.02 0.00 0.00 4.45
2444 2551 5.667172 TGTGAGAAATTGAGGATCCTGGATA 59.333 40.000 22.02 1.22 0.00 2.59
2447 2554 7.174599 GTGAGAAATTGAGGATCCTGGATATTG 59.825 40.741 22.02 0.00 0.00 1.90
2454 2561 5.162826 TGAGGATCCTGGATATTGAGTACCT 60.163 44.000 22.02 9.01 0.00 3.08
2455 2562 5.337788 AGGATCCTGGATATTGAGTACCTC 58.662 45.833 15.29 0.00 0.00 3.85
2458 2565 4.223953 TCCTGGATATTGAGTACCTCCAC 58.776 47.826 0.00 0.00 32.71 4.02
2460 2567 3.967326 CTGGATATTGAGTACCTCCACCA 59.033 47.826 0.00 0.00 32.71 4.17
2462 2569 3.967987 GGATATTGAGTACCTCCACCAGT 59.032 47.826 0.00 0.00 0.00 4.00
2463 2570 4.039366 GGATATTGAGTACCTCCACCAGTC 59.961 50.000 0.00 0.00 0.00 3.51
2465 2572 3.820195 TTGAGTACCTCCACCAGTCTA 57.180 47.619 0.00 0.00 0.00 2.59
2466 2573 3.367646 TGAGTACCTCCACCAGTCTAG 57.632 52.381 0.00 0.00 0.00 2.43
2467 2574 2.648304 TGAGTACCTCCACCAGTCTAGT 59.352 50.000 0.00 0.00 0.00 2.57
2468 2575 3.281158 GAGTACCTCCACCAGTCTAGTC 58.719 54.545 0.00 0.00 0.00 2.59
2469 2576 2.025131 AGTACCTCCACCAGTCTAGTCC 60.025 54.545 0.00 0.00 0.00 3.85
2471 2578 0.041238 CCTCCACCAGTCTAGTCCCA 59.959 60.000 0.00 0.00 0.00 4.37
2472 2579 1.552486 CCTCCACCAGTCTAGTCCCAA 60.552 57.143 0.00 0.00 0.00 4.12
2473 2580 1.827969 CTCCACCAGTCTAGTCCCAAG 59.172 57.143 0.00 0.00 0.00 3.61
2474 2581 0.250513 CCACCAGTCTAGTCCCAAGC 59.749 60.000 0.00 0.00 0.00 4.01
2475 2582 0.976641 CACCAGTCTAGTCCCAAGCA 59.023 55.000 0.00 0.00 0.00 3.91
2476 2583 1.347707 CACCAGTCTAGTCCCAAGCAA 59.652 52.381 0.00 0.00 0.00 3.91
2477 2584 1.625818 ACCAGTCTAGTCCCAAGCAAG 59.374 52.381 0.00 0.00 0.00 4.01
2480 2587 2.828520 CAGTCTAGTCCCAAGCAAGAGA 59.171 50.000 0.00 0.00 0.00 3.10
2481 2588 2.829120 AGTCTAGTCCCAAGCAAGAGAC 59.171 50.000 0.00 0.00 33.58 3.36
2482 2589 2.093921 GTCTAGTCCCAAGCAAGAGACC 60.094 54.545 0.00 0.00 0.00 3.85
2483 2590 1.902508 CTAGTCCCAAGCAAGAGACCA 59.097 52.381 0.00 0.00 0.00 4.02
2485 2592 1.494721 AGTCCCAAGCAAGAGACCAAA 59.505 47.619 0.00 0.00 0.00 3.28
2488 2595 2.091885 TCCCAAGCAAGAGACCAAAAGT 60.092 45.455 0.00 0.00 0.00 2.66
2489 2596 2.294512 CCCAAGCAAGAGACCAAAAGTC 59.705 50.000 0.00 0.00 46.71 3.01
2812 2919 1.200484 TGTAAGTACGTCGCAGCATGA 59.800 47.619 0.00 0.00 39.69 3.07
2850 2957 6.134535 TGCTCCTTCTAATTTGGTTCCTTA 57.865 37.500 0.00 0.00 0.00 2.69
2883 2990 7.120579 TGCGTTAATCTCTGAACACCATAAATT 59.879 33.333 0.00 0.00 0.00 1.82
2884 2991 8.609176 GCGTTAATCTCTGAACACCATAAATTA 58.391 33.333 0.00 0.00 0.00 1.40
3095 5825 9.271738 GAGAAGAAAGCGAAAAATGAGATTTAG 57.728 33.333 0.00 0.00 0.00 1.85
3197 5927 2.416836 CGCCGAAGAAGGTGATAGTCAA 60.417 50.000 0.00 0.00 44.18 3.18
3202 5932 5.643777 CCGAAGAAGGTGATAGTCAATTTGT 59.356 40.000 0.00 0.00 0.00 2.83
3231 5961 3.030291 TGGTCCTTTTTGTGCTTGATGT 58.970 40.909 0.00 0.00 0.00 3.06
3403 6142 2.518949 CATCATTGCACGCCTGTTTAC 58.481 47.619 0.00 0.00 0.00 2.01
3794 6538 3.262420 TCTAACGAGGATTTTGCTGCTC 58.738 45.455 0.00 0.00 0.00 4.26
4101 6845 1.667724 GCGATCTCAACAGTTGGATGG 59.332 52.381 13.52 15.08 0.00 3.51
4332 7076 3.004839 AGGTAGCATGCGTATCTACTGTG 59.995 47.826 13.01 0.00 34.62 3.66
4411 7155 1.292223 CCTGTACCGGTGACCACTG 59.708 63.158 19.93 11.19 37.44 3.66
4433 7177 6.976925 ACTGTTACGATGGTAGTAATTAGTGC 59.023 38.462 2.90 1.42 36.59 4.40
4736 7722 9.944376 TTTCATTTTAGCAGTACATAGAAGAGT 57.056 29.630 0.00 0.00 0.00 3.24
4765 7751 7.743838 GTCTATAATTTGATCAAGATGCGCTTC 59.256 37.037 15.04 15.04 33.60 3.86
4808 7794 8.433421 TCCTTGTTTGAGTAGACTAAGTTTTG 57.567 34.615 0.00 0.00 0.00 2.44
4810 7796 8.674607 CCTTGTTTGAGTAGACTAAGTTTTGTT 58.325 33.333 0.00 0.00 0.00 2.83
4816 7802 6.145534 TGAGTAGACTAAGTTTTGTTGATGCG 59.854 38.462 0.00 0.00 0.00 4.73
4838 7824 3.552132 TCAGTTTGCTGTTGACCTGTA 57.448 42.857 0.00 0.00 43.05 2.74
4848 7834 3.799366 TGTTGACCTGTACGTGACAAAT 58.201 40.909 0.00 0.00 37.70 2.32
4936 7922 2.027192 GGTCCTCATGTTTGCTGGACTA 60.027 50.000 9.81 0.00 41.64 2.59
4946 7932 7.710907 TCATGTTTGCTGGACTATATCAGTTAC 59.289 37.037 0.00 0.00 37.72 2.50
5040 8026 9.152327 TCATCATTTATCCAGACACTCTTAGAT 57.848 33.333 0.00 0.00 0.00 1.98
5138 8124 8.261492 ACTTGTTAAACTCATGACATGATCTC 57.739 34.615 18.28 7.24 38.85 2.75
5184 8170 1.753073 GTGGAAGATGATTGGCTTGGG 59.247 52.381 0.00 0.00 0.00 4.12
5501 8490 7.626664 GCATCTCTCTGAATTTGGCATATCATC 60.627 40.741 0.00 0.00 0.00 2.92
5538 8641 6.892658 ACTTTGTATGTTGCATTTAGGACA 57.107 33.333 0.00 0.00 0.00 4.02
5545 8648 2.493278 GTTGCATTTAGGACATGTGGCT 59.507 45.455 1.15 0.00 0.00 4.75
5558 8661 2.708216 TGTGGCTTGAGTTTCAGACA 57.292 45.000 0.00 0.00 0.00 3.41
5578 8689 4.137543 ACAATCAAGACTTGGAACTGGTC 58.862 43.478 15.13 0.00 0.00 4.02
5590 8701 4.340617 TGGAACTGGTCATGGGTAAATTC 58.659 43.478 0.00 0.00 0.00 2.17
5599 8710 8.893563 TGGTCATGGGTAAATTCTCTTAAATT 57.106 30.769 0.00 0.00 0.00 1.82
5600 8711 8.748412 TGGTCATGGGTAAATTCTCTTAAATTG 58.252 33.333 0.00 0.00 0.00 2.32
5606 8718 9.487442 TGGGTAAATTCTCTTAAATTGCCTTAT 57.513 29.630 0.00 0.00 30.99 1.73
5664 8776 5.079643 ACCTTGTTGATTCACCAGCTTATT 58.920 37.500 0.00 0.00 0.00 1.40
5673 8785 5.581126 TTCACCAGCTTATTTTGCCATAG 57.419 39.130 0.00 0.00 0.00 2.23
5682 8794 6.042777 GCTTATTTTGCCATAGTTTTCTCCC 58.957 40.000 0.00 0.00 0.00 4.30
5683 8795 6.350949 GCTTATTTTGCCATAGTTTTCTCCCA 60.351 38.462 0.00 0.00 0.00 4.37
5684 8796 7.633553 GCTTATTTTGCCATAGTTTTCTCCCAT 60.634 37.037 0.00 0.00 0.00 4.00
5687 8799 2.091885 TGCCATAGTTTTCTCCCATCCC 60.092 50.000 0.00 0.00 0.00 3.85
5688 8800 2.851195 CCATAGTTTTCTCCCATCCCG 58.149 52.381 0.00 0.00 0.00 5.14
5740 8852 5.423290 TCTGCTGACAGGAGAATTCTCAATA 59.577 40.000 31.29 14.67 39.82 1.90
5743 8855 5.396213 GCTGACAGGAGAATTCTCAATAGGT 60.396 44.000 31.29 21.44 44.60 3.08
5769 8881 7.766219 ATAACAAAATCATTCTGCATTGCTC 57.234 32.000 10.49 0.00 0.00 4.26
5779 8891 7.200455 TCATTCTGCATTGCTCAGATAATTTG 58.800 34.615 10.49 0.40 39.96 2.32
5792 8904 2.892373 TAATTTGGCGAGTTGCTTCG 57.108 45.000 1.51 2.22 45.43 3.79
5853 8965 2.503943 CGAAATCGGTGTACAACTGC 57.496 50.000 9.68 0.00 34.87 4.40
5932 9044 9.265901 CGTATCTATGATCTGGAAACTTTGATT 57.734 33.333 0.00 0.00 0.00 2.57
5966 9078 3.848377 TCCCCTGGATCCATCTGATAATG 59.152 47.826 16.63 0.00 32.41 1.90
5967 9079 3.848377 CCCCTGGATCCATCTGATAATGA 59.152 47.826 16.63 0.00 32.41 2.57
5968 9080 4.477581 CCCCTGGATCCATCTGATAATGAT 59.522 45.833 16.63 0.00 32.41 2.45
5969 9081 5.397672 CCCCTGGATCCATCTGATAATGATC 60.398 48.000 16.63 12.19 32.41 2.92
5970 9082 5.429109 CCCTGGATCCATCTGATAATGATCT 59.571 44.000 16.63 0.00 32.41 2.75
5971 9083 6.350103 CCTGGATCCATCTGATAATGATCTG 58.650 44.000 16.63 0.00 32.41 2.90
5972 9084 6.309389 TGGATCCATCTGATAATGATCTGG 57.691 41.667 11.44 4.39 32.41 3.86
5973 9085 6.027482 TGGATCCATCTGATAATGATCTGGA 58.973 40.000 11.44 2.69 37.97 3.86
5974 9086 6.502863 TGGATCCATCTGATAATGATCTGGAA 59.497 38.462 11.44 0.00 37.44 3.53
5975 9087 7.017850 TGGATCCATCTGATAATGATCTGGAAA 59.982 37.037 11.44 0.00 37.44 3.13
5976 9088 7.336427 GGATCCATCTGATAATGATCTGGAAAC 59.664 40.741 6.95 2.78 37.44 2.78
5977 9089 7.384524 TCCATCTGATAATGATCTGGAAACT 57.615 36.000 0.00 0.00 33.27 2.66
5978 9090 7.809238 TCCATCTGATAATGATCTGGAAACTT 58.191 34.615 0.00 0.00 33.27 2.66
5979 9091 8.277197 TCCATCTGATAATGATCTGGAAACTTT 58.723 33.333 0.00 0.00 33.27 2.66
5980 9092 8.350722 CCATCTGATAATGATCTGGAAACTTTG 58.649 37.037 0.00 0.00 29.99 2.77
5981 9093 9.117183 CATCTGATAATGATCTGGAAACTTTGA 57.883 33.333 0.00 0.00 33.11 2.69
5982 9094 9.863650 ATCTGATAATGATCTGGAAACTTTGAT 57.136 29.630 0.00 0.00 33.11 2.57
5983 9095 9.690913 TCTGATAATGATCTGGAAACTTTGATT 57.309 29.630 0.00 0.00 33.11 2.57
5984 9096 9.731819 CTGATAATGATCTGGAAACTTTGATTG 57.268 33.333 0.00 0.00 32.79 2.67
5985 9097 8.192774 TGATAATGATCTGGAAACTTTGATTGC 58.807 33.333 0.00 0.00 32.79 3.56
5986 9098 6.600882 AATGATCTGGAAACTTTGATTGCT 57.399 33.333 0.00 0.00 0.00 3.91
5987 9099 6.600882 ATGATCTGGAAACTTTGATTGCTT 57.399 33.333 0.00 0.00 0.00 3.91
5988 9100 6.017400 TGATCTGGAAACTTTGATTGCTTC 57.983 37.500 0.00 0.00 0.00 3.86
5989 9101 5.771666 TGATCTGGAAACTTTGATTGCTTCT 59.228 36.000 0.00 0.00 0.00 2.85
5990 9102 5.695851 TCTGGAAACTTTGATTGCTTCTC 57.304 39.130 0.00 0.00 0.00 2.87
5991 9103 4.214119 TCTGGAAACTTTGATTGCTTCTCG 59.786 41.667 0.00 0.00 0.00 4.04
5992 9104 3.882888 TGGAAACTTTGATTGCTTCTCGT 59.117 39.130 0.00 0.00 0.00 4.18
5993 9105 4.222114 GGAAACTTTGATTGCTTCTCGTG 58.778 43.478 0.00 0.00 0.00 4.35
5994 9106 3.904136 AACTTTGATTGCTTCTCGTGG 57.096 42.857 0.00 0.00 0.00 4.94
5995 9107 2.851195 ACTTTGATTGCTTCTCGTGGT 58.149 42.857 0.00 0.00 0.00 4.16
5996 9108 2.808543 ACTTTGATTGCTTCTCGTGGTC 59.191 45.455 0.00 0.00 0.00 4.02
5997 9109 1.808411 TTGATTGCTTCTCGTGGTCC 58.192 50.000 0.00 0.00 0.00 4.46
5998 9110 0.036388 TGATTGCTTCTCGTGGTCCC 60.036 55.000 0.00 0.00 0.00 4.46
5999 9111 0.744771 GATTGCTTCTCGTGGTCCCC 60.745 60.000 0.00 0.00 0.00 4.81
6000 9112 1.201429 ATTGCTTCTCGTGGTCCCCT 61.201 55.000 0.00 0.00 0.00 4.79
6001 9113 2.111999 TTGCTTCTCGTGGTCCCCTG 62.112 60.000 0.00 0.00 0.00 4.45
6006 9118 2.365105 TCGTGGTCCCCTGGATCC 60.365 66.667 4.20 4.20 30.39 3.36
6014 9126 2.495383 GGTCCCCTGGATCCATCTGATA 60.495 54.545 16.63 0.00 32.73 2.15
6016 9128 3.848975 GTCCCCTGGATCCATCTGATAAT 59.151 47.826 16.63 0.00 32.73 1.28
6042 9154 6.121776 TCTGGAAACTTTCAATACCTGCTA 57.878 37.500 3.93 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.057245 GGGTTGATTCTCAAACTGAAGCC 60.057 47.826 5.02 0.00 43.35 4.35
10 11 3.593442 TGGTGGGTTGATTCTCAAACT 57.407 42.857 5.02 0.00 43.35 2.66
30 31 0.753262 ACTCGGTGCTTCAGAGTGTT 59.247 50.000 12.27 0.00 46.52 3.32
264 265 3.470567 GAGTGCGGCTTCACGTCG 61.471 66.667 0.00 0.00 45.28 5.12
336 337 1.006571 GAACAGCCTGTTCGACGGA 60.007 57.895 20.85 0.00 45.88 4.69
392 393 1.381327 TGGTAGCTCGGGGGAAGAG 60.381 63.158 0.00 0.00 38.68 2.85
671 672 1.949547 GCAGCAGAAGCAGGATGAAGT 60.950 52.381 0.00 0.00 45.49 3.01
676 677 1.224039 GGAGCAGCAGAAGCAGGAT 59.776 57.895 0.00 0.00 45.49 3.24
807 808 3.567579 TTCTGGGAAAGCCGGCCTG 62.568 63.158 26.15 11.57 33.83 4.85
973 974 2.282958 TCGCGGGTGAGAAGAGGT 60.283 61.111 6.13 0.00 0.00 3.85
994 1000 4.864334 GGTGGCCTCCATGAGCGG 62.864 72.222 19.19 0.00 35.28 5.52
1305 1311 6.111768 AGCTAACATCAAAATTCTACGCAG 57.888 37.500 0.00 0.00 0.00 5.18
1523 1619 1.764723 TGGATCTACCCATGCTCACTG 59.235 52.381 0.00 0.00 38.00 3.66
1551 1647 4.262121 CCCAAGAAACAGCATCATGAAACA 60.262 41.667 0.00 0.00 0.00 2.83
1563 1659 1.180029 CCATCCAGCCCAAGAAACAG 58.820 55.000 0.00 0.00 0.00 3.16
1591 1687 9.599866 TTGTATCAGTAGAATTCGATCATTGTT 57.400 29.630 0.00 0.00 0.00 2.83
1654 1750 3.006677 TGCCAGGCATAAGGGACC 58.993 61.111 11.22 0.00 31.71 4.46
1666 1762 1.064166 AGATGAGGGGACAAATGCCAG 60.064 52.381 0.00 0.00 38.32 4.85
1676 1772 1.982226 TCCAAACGAAAGATGAGGGGA 59.018 47.619 0.00 0.00 0.00 4.81
1705 1801 9.575868 TTTCAAACAAAACTGGGATACTATGTA 57.424 29.630 0.00 0.00 0.00 2.29
1707 1803 7.542130 GCTTTCAAACAAAACTGGGATACTATG 59.458 37.037 0.00 0.00 0.00 2.23
1709 1805 6.293735 CGCTTTCAAACAAAACTGGGATACTA 60.294 38.462 0.00 0.00 0.00 1.82
1712 1808 4.580995 TCGCTTTCAAACAAAACTGGGATA 59.419 37.500 0.00 0.00 0.00 2.59
1713 1809 3.383185 TCGCTTTCAAACAAAACTGGGAT 59.617 39.130 0.00 0.00 0.00 3.85
1724 1820 4.083271 AGGCTACTTTCATCGCTTTCAAAC 60.083 41.667 0.00 0.00 0.00 2.93
1726 1822 3.674997 AGGCTACTTTCATCGCTTTCAA 58.325 40.909 0.00 0.00 0.00 2.69
1745 1841 3.575506 TGGTATGCCAGCAGAAAGG 57.424 52.632 0.00 0.00 40.46 3.11
1798 1894 6.843752 TCCTAGTTGTTCAATTCAGGGTTTA 58.156 36.000 8.85 0.00 0.00 2.01
1813 1909 1.202891 GCACCCTGGTTTCCTAGTTGT 60.203 52.381 0.00 0.00 0.00 3.32
1830 1926 1.539827 GGATGTAGGTTGGTGTTGCAC 59.460 52.381 0.00 0.00 0.00 4.57
1832 1928 1.812571 CTGGATGTAGGTTGGTGTTGC 59.187 52.381 0.00 0.00 0.00 4.17
1844 1940 0.038021 TTTGCTGCAGGCTGGATGTA 59.962 50.000 17.12 4.47 42.39 2.29
1850 1946 1.400846 CAGTCTATTTGCTGCAGGCTG 59.599 52.381 17.12 10.94 42.39 4.85
1858 1954 4.413087 CGTTACTCGTCAGTCTATTTGCT 58.587 43.478 0.00 0.00 33.62 3.91
1864 1960 2.768253 TCCCGTTACTCGTCAGTCTA 57.232 50.000 0.00 0.00 37.94 2.59
1866 1962 2.935481 ATTCCCGTTACTCGTCAGTC 57.065 50.000 0.00 0.00 37.94 3.51
1869 1965 1.406539 GCCTATTCCCGTTACTCGTCA 59.593 52.381 0.00 0.00 37.94 4.35
1873 1969 2.037144 TCCAGCCTATTCCCGTTACTC 58.963 52.381 0.00 0.00 0.00 2.59
1913 2009 4.338118 ACAGTTGTTTATGGGTCTGTTGTG 59.662 41.667 0.00 0.00 33.26 3.33
1914 2010 4.532834 ACAGTTGTTTATGGGTCTGTTGT 58.467 39.130 0.00 0.00 33.26 3.32
1915 2011 5.514274 AACAGTTGTTTATGGGTCTGTTG 57.486 39.130 7.41 0.00 42.09 3.33
1939 2046 1.892468 CTAGACACGGCGTTGAGTAC 58.108 55.000 11.19 0.25 0.00 2.73
1950 2057 4.778415 AGGCGCACGCTAGACACG 62.778 66.667 15.36 0.00 41.60 4.49
1965 2072 0.040204 AATTGCTGTTGGAGGGGAGG 59.960 55.000 0.00 0.00 0.00 4.30
2044 2151 2.359981 ACTCCTCCCATGCATCAATG 57.640 50.000 0.00 0.00 0.00 2.82
2045 2152 2.779430 TGTACTCCTCCCATGCATCAAT 59.221 45.455 0.00 0.00 0.00 2.57
2060 2167 6.644592 GGTGCTCAGAGATTGATATTGTACTC 59.355 42.308 0.00 0.00 34.68 2.59
2063 2170 6.484364 TGGTGCTCAGAGATTGATATTGTA 57.516 37.500 0.00 0.00 34.68 2.41
2065 2172 6.879276 AATGGTGCTCAGAGATTGATATTG 57.121 37.500 0.00 0.00 34.68 1.90
2105 2212 9.733556 TCTGTAAAATGCTCCTAGTTGAATAAA 57.266 29.630 0.00 0.00 0.00 1.40
2107 2214 9.733556 TTTCTGTAAAATGCTCCTAGTTGAATA 57.266 29.630 0.00 0.00 0.00 1.75
2108 2215 8.635765 TTTCTGTAAAATGCTCCTAGTTGAAT 57.364 30.769 0.00 0.00 0.00 2.57
2109 2216 7.936847 TCTTTCTGTAAAATGCTCCTAGTTGAA 59.063 33.333 0.00 0.00 0.00 2.69
2110 2217 7.450074 TCTTTCTGTAAAATGCTCCTAGTTGA 58.550 34.615 0.00 0.00 0.00 3.18
2111 2218 7.672983 TCTTTCTGTAAAATGCTCCTAGTTG 57.327 36.000 0.00 0.00 0.00 3.16
2112 2219 7.094592 GCTTCTTTCTGTAAAATGCTCCTAGTT 60.095 37.037 0.00 0.00 0.00 2.24
2113 2220 6.372937 GCTTCTTTCTGTAAAATGCTCCTAGT 59.627 38.462 0.00 0.00 0.00 2.57
2114 2221 6.372659 TGCTTCTTTCTGTAAAATGCTCCTAG 59.627 38.462 0.00 0.00 0.00 3.02
2115 2222 6.237901 TGCTTCTTTCTGTAAAATGCTCCTA 58.762 36.000 0.00 0.00 0.00 2.94
2116 2223 5.072741 TGCTTCTTTCTGTAAAATGCTCCT 58.927 37.500 0.00 0.00 0.00 3.69
2117 2224 5.376854 TGCTTCTTTCTGTAAAATGCTCC 57.623 39.130 0.00 0.00 0.00 4.70
2119 2226 6.579666 TCATGCTTCTTTCTGTAAAATGCT 57.420 33.333 0.00 0.00 0.00 3.79
2121 2228 7.869429 ACCTTTCATGCTTCTTTCTGTAAAATG 59.131 33.333 0.00 0.00 0.00 2.32
2122 2229 7.955918 ACCTTTCATGCTTCTTTCTGTAAAAT 58.044 30.769 0.00 0.00 0.00 1.82
2123 2230 7.346751 ACCTTTCATGCTTCTTTCTGTAAAA 57.653 32.000 0.00 0.00 0.00 1.52
2125 2232 7.500892 TGTTACCTTTCATGCTTCTTTCTGTAA 59.499 33.333 0.00 0.00 0.00 2.41
2126 2233 6.995686 TGTTACCTTTCATGCTTCTTTCTGTA 59.004 34.615 0.00 0.00 0.00 2.74
2128 2235 6.145535 GTGTTACCTTTCATGCTTCTTTCTG 58.854 40.000 0.00 0.00 0.00 3.02
2129 2236 5.827797 TGTGTTACCTTTCATGCTTCTTTCT 59.172 36.000 0.00 0.00 0.00 2.52
2130 2237 5.915196 GTGTGTTACCTTTCATGCTTCTTTC 59.085 40.000 0.00 0.00 0.00 2.62
2131 2238 5.594317 AGTGTGTTACCTTTCATGCTTCTTT 59.406 36.000 0.00 0.00 0.00 2.52
2133 2240 4.516698 CAGTGTGTTACCTTTCATGCTTCT 59.483 41.667 0.00 0.00 0.00 2.85
2134 2241 4.320494 CCAGTGTGTTACCTTTCATGCTTC 60.320 45.833 0.00 0.00 0.00 3.86
2135 2242 3.569701 CCAGTGTGTTACCTTTCATGCTT 59.430 43.478 0.00 0.00 0.00 3.91
2139 2246 6.121776 TGTATCCAGTGTGTTACCTTTCAT 57.878 37.500 0.00 0.00 0.00 2.57
2140 2247 5.547465 CTGTATCCAGTGTGTTACCTTTCA 58.453 41.667 0.00 0.00 33.80 2.69
2154 2261 5.365021 AGGGAAATTCTCACTGTATCCAG 57.635 43.478 0.00 0.00 36.00 3.86
2164 2271 4.656100 TGTCCAATCAGGGAAATTCTCA 57.344 40.909 0.00 0.00 39.05 3.27
2165 2272 5.478332 ACTTTGTCCAATCAGGGAAATTCTC 59.522 40.000 0.00 0.00 39.05 2.87
2166 2273 5.397360 ACTTTGTCCAATCAGGGAAATTCT 58.603 37.500 0.00 0.00 39.05 2.40
2167 2274 5.714047 GACTTTGTCCAATCAGGGAAATTC 58.286 41.667 0.00 0.00 39.05 2.17
2182 2289 9.036671 GTTTAAGCTCAGATATAGGACTTTGTC 57.963 37.037 0.00 0.00 0.00 3.18
2183 2290 8.540388 TGTTTAAGCTCAGATATAGGACTTTGT 58.460 33.333 0.00 0.00 0.00 2.83
2186 2293 9.553064 CATTGTTTAAGCTCAGATATAGGACTT 57.447 33.333 0.00 0.00 0.00 3.01
2200 2307 9.476202 GACCTTTAATGTTTCATTGTTTAAGCT 57.524 29.630 5.40 0.00 0.00 3.74
2201 2308 9.476202 AGACCTTTAATGTTTCATTGTTTAAGC 57.524 29.630 5.40 0.00 0.00 3.09
2208 2315 9.294030 GCAGAATAGACCTTTAATGTTTCATTG 57.706 33.333 5.40 0.00 0.00 2.82
2209 2316 8.470002 GGCAGAATAGACCTTTAATGTTTCATT 58.530 33.333 0.80 0.80 0.00 2.57
2210 2317 7.836183 AGGCAGAATAGACCTTTAATGTTTCAT 59.164 33.333 0.00 0.00 0.00 2.57
2211 2318 7.175104 AGGCAGAATAGACCTTTAATGTTTCA 58.825 34.615 0.00 0.00 0.00 2.69
2212 2319 7.631717 AGGCAGAATAGACCTTTAATGTTTC 57.368 36.000 0.00 0.00 0.00 2.78
2223 2330 6.516739 AGCTTTAAAAAGGCAGAATAGACC 57.483 37.500 4.71 0.00 36.53 3.85
2224 2331 7.190191 GCTAGCTTTAAAAAGGCAGAATAGAC 58.810 38.462 7.70 0.00 36.53 2.59
2226 2333 6.319911 AGGCTAGCTTTAAAAAGGCAGAATAG 59.680 38.462 15.72 5.11 37.01 1.73
2227 2334 6.187682 AGGCTAGCTTTAAAAAGGCAGAATA 58.812 36.000 15.72 0.00 37.01 1.75
2230 2337 4.034285 AGGCTAGCTTTAAAAAGGCAGA 57.966 40.909 15.72 0.00 37.01 4.26
2231 2338 4.218417 TCAAGGCTAGCTTTAAAAAGGCAG 59.782 41.667 15.72 0.00 37.01 4.85
2232 2339 4.148838 TCAAGGCTAGCTTTAAAAAGGCA 58.851 39.130 15.72 0.00 37.01 4.75
2234 2341 6.981722 TCTTTCAAGGCTAGCTTTAAAAAGG 58.018 36.000 27.81 17.74 36.53 3.11
2237 2344 7.759489 TCATCTTTCAAGGCTAGCTTTAAAA 57.241 32.000 15.72 11.16 0.00 1.52
2238 2345 7.611467 TCATCATCTTTCAAGGCTAGCTTTAAA 59.389 33.333 15.72 2.25 0.00 1.52
2239 2346 7.112122 TCATCATCTTTCAAGGCTAGCTTTAA 58.888 34.615 15.72 4.67 0.00 1.52
2240 2347 6.653020 TCATCATCTTTCAAGGCTAGCTTTA 58.347 36.000 15.72 0.00 0.00 1.85
2241 2348 5.503927 TCATCATCTTTCAAGGCTAGCTTT 58.496 37.500 15.72 11.02 0.00 3.51
2242 2349 5.108187 TCATCATCTTTCAAGGCTAGCTT 57.892 39.130 15.72 3.40 0.00 3.74
2243 2350 4.706035 CTCATCATCTTTCAAGGCTAGCT 58.294 43.478 15.72 0.00 0.00 3.32
2244 2351 3.250521 GCTCATCATCTTTCAAGGCTAGC 59.749 47.826 6.04 6.04 0.00 3.42
2245 2352 3.814283 GGCTCATCATCTTTCAAGGCTAG 59.186 47.826 0.00 0.00 0.00 3.42
2246 2353 3.457380 AGGCTCATCATCTTTCAAGGCTA 59.543 43.478 0.00 0.00 37.81 3.93
2247 2354 2.241685 AGGCTCATCATCTTTCAAGGCT 59.758 45.455 0.00 0.00 35.13 4.58
2248 2355 2.652590 AGGCTCATCATCTTTCAAGGC 58.347 47.619 0.00 0.00 0.00 4.35
2249 2356 4.096081 GTCAAGGCTCATCATCTTTCAAGG 59.904 45.833 0.00 0.00 0.00 3.61
2250 2357 4.201792 CGTCAAGGCTCATCATCTTTCAAG 60.202 45.833 0.00 0.00 0.00 3.02
2251 2358 3.686241 CGTCAAGGCTCATCATCTTTCAA 59.314 43.478 0.00 0.00 0.00 2.69
2252 2359 3.264947 CGTCAAGGCTCATCATCTTTCA 58.735 45.455 0.00 0.00 0.00 2.69
2253 2360 3.265791 ACGTCAAGGCTCATCATCTTTC 58.734 45.455 0.00 0.00 0.00 2.62
2254 2361 3.340814 ACGTCAAGGCTCATCATCTTT 57.659 42.857 0.00 0.00 0.00 2.52
2255 2362 3.005554 CAACGTCAAGGCTCATCATCTT 58.994 45.455 0.00 0.00 0.00 2.40
2256 2363 2.234661 TCAACGTCAAGGCTCATCATCT 59.765 45.455 0.00 0.00 0.00 2.90
2257 2364 2.621338 TCAACGTCAAGGCTCATCATC 58.379 47.619 0.00 0.00 0.00 2.92
2258 2365 2.768253 TCAACGTCAAGGCTCATCAT 57.232 45.000 0.00 0.00 0.00 2.45
2259 2366 2.768253 ATCAACGTCAAGGCTCATCA 57.232 45.000 0.00 0.00 0.00 3.07
2260 2367 2.352960 GGAATCAACGTCAAGGCTCATC 59.647 50.000 0.00 0.00 0.00 2.92
2261 2368 2.026822 AGGAATCAACGTCAAGGCTCAT 60.027 45.455 0.00 0.00 0.00 2.90
2262 2369 1.347707 AGGAATCAACGTCAAGGCTCA 59.652 47.619 0.00 0.00 0.00 4.26
2263 2370 2.003301 GAGGAATCAACGTCAAGGCTC 58.997 52.381 0.00 0.00 0.00 4.70
2264 2371 1.625818 AGAGGAATCAACGTCAAGGCT 59.374 47.619 0.00 0.00 0.00 4.58
2265 2372 1.734465 CAGAGGAATCAACGTCAAGGC 59.266 52.381 0.00 0.00 0.00 4.35
2266 2373 3.045601 ACAGAGGAATCAACGTCAAGG 57.954 47.619 0.00 0.00 0.00 3.61
2267 2374 6.147821 ACATTAACAGAGGAATCAACGTCAAG 59.852 38.462 0.00 0.00 0.00 3.02
2268 2375 5.995282 ACATTAACAGAGGAATCAACGTCAA 59.005 36.000 0.00 0.00 0.00 3.18
2269 2376 5.408299 CACATTAACAGAGGAATCAACGTCA 59.592 40.000 0.00 0.00 0.00 4.35
2270 2377 5.637810 TCACATTAACAGAGGAATCAACGTC 59.362 40.000 0.00 0.00 0.00 4.34
2271 2378 5.547465 TCACATTAACAGAGGAATCAACGT 58.453 37.500 0.00 0.00 0.00 3.99
2272 2379 5.869344 TCTCACATTAACAGAGGAATCAACG 59.131 40.000 0.00 0.00 0.00 4.10
2273 2380 7.672983 TTCTCACATTAACAGAGGAATCAAC 57.327 36.000 0.00 0.00 0.00 3.18
2274 2381 7.174946 GGTTTCTCACATTAACAGAGGAATCAA 59.825 37.037 0.00 0.00 30.06 2.57
2275 2382 6.655003 GGTTTCTCACATTAACAGAGGAATCA 59.345 38.462 0.00 0.00 30.06 2.57
2276 2383 6.094186 GGGTTTCTCACATTAACAGAGGAATC 59.906 42.308 0.00 0.00 30.17 2.52
2277 2384 5.946377 GGGTTTCTCACATTAACAGAGGAAT 59.054 40.000 0.00 0.00 30.17 3.01
2278 2385 5.073144 AGGGTTTCTCACATTAACAGAGGAA 59.927 40.000 0.00 0.00 0.00 3.36
2279 2386 4.597507 AGGGTTTCTCACATTAACAGAGGA 59.402 41.667 0.00 0.00 0.00 3.71
2280 2387 4.697352 CAGGGTTTCTCACATTAACAGAGG 59.303 45.833 0.00 0.00 0.00 3.69
2281 2388 4.154918 GCAGGGTTTCTCACATTAACAGAG 59.845 45.833 0.00 0.00 0.00 3.35
2282 2389 4.072131 GCAGGGTTTCTCACATTAACAGA 58.928 43.478 0.00 0.00 0.00 3.41
2283 2390 4.074970 AGCAGGGTTTCTCACATTAACAG 58.925 43.478 0.00 0.00 0.00 3.16
2284 2391 4.098914 AGCAGGGTTTCTCACATTAACA 57.901 40.909 0.00 0.00 0.00 2.41
2285 2392 4.762251 AGAAGCAGGGTTTCTCACATTAAC 59.238 41.667 0.00 0.00 29.05 2.01
2286 2393 4.985538 AGAAGCAGGGTTTCTCACATTAA 58.014 39.130 0.00 0.00 29.05 1.40
2287 2394 4.579869 GAGAAGCAGGGTTTCTCACATTA 58.420 43.478 15.15 0.00 46.22 1.90
2288 2395 3.416156 GAGAAGCAGGGTTTCTCACATT 58.584 45.455 15.15 0.00 46.22 2.71
2289 2396 3.064900 GAGAAGCAGGGTTTCTCACAT 57.935 47.619 15.15 0.00 46.22 3.21
2290 2397 2.550830 GAGAAGCAGGGTTTCTCACA 57.449 50.000 15.15 0.00 46.22 3.58
2293 2400 3.409026 TTCAGAGAAGCAGGGTTTCTC 57.591 47.619 12.98 12.98 46.95 2.87
2294 2401 3.864789 TTTCAGAGAAGCAGGGTTTCT 57.135 42.857 0.00 0.00 37.59 2.52
2295 2402 4.137543 TCTTTTCAGAGAAGCAGGGTTTC 58.862 43.478 0.00 0.00 0.00 2.78
2296 2403 4.170468 TCTTTTCAGAGAAGCAGGGTTT 57.830 40.909 0.00 0.00 0.00 3.27
2297 2404 3.864789 TCTTTTCAGAGAAGCAGGGTT 57.135 42.857 0.00 0.00 0.00 4.11
2298 2405 3.749226 CTTCTTTTCAGAGAAGCAGGGT 58.251 45.455 2.11 0.00 44.23 4.34
2305 2412 6.051717 CAGAACAGTCCTTCTTTTCAGAGAA 58.948 40.000 0.00 0.00 35.87 2.87
2306 2413 5.129485 ACAGAACAGTCCTTCTTTTCAGAGA 59.871 40.000 0.00 0.00 35.87 3.10
2307 2414 5.363939 ACAGAACAGTCCTTCTTTTCAGAG 58.636 41.667 0.00 0.00 35.87 3.35
2308 2415 5.359194 ACAGAACAGTCCTTCTTTTCAGA 57.641 39.130 0.00 0.00 35.87 3.27
2309 2416 7.117523 CAGATACAGAACAGTCCTTCTTTTCAG 59.882 40.741 0.00 0.00 35.87 3.02
2310 2417 6.931281 CAGATACAGAACAGTCCTTCTTTTCA 59.069 38.462 0.00 0.00 35.87 2.69
2311 2418 7.155328 TCAGATACAGAACAGTCCTTCTTTTC 58.845 38.462 0.00 0.00 34.22 2.29
2312 2419 7.067496 TCAGATACAGAACAGTCCTTCTTTT 57.933 36.000 0.00 0.00 0.00 2.27
2313 2420 6.672266 TCAGATACAGAACAGTCCTTCTTT 57.328 37.500 0.00 0.00 0.00 2.52
2314 2421 5.337169 GCTCAGATACAGAACAGTCCTTCTT 60.337 44.000 0.00 0.00 0.00 2.52
2315 2422 4.159506 GCTCAGATACAGAACAGTCCTTCT 59.840 45.833 0.00 0.00 0.00 2.85
2316 2423 4.159506 AGCTCAGATACAGAACAGTCCTTC 59.840 45.833 0.00 0.00 0.00 3.46
2317 2424 4.093011 AGCTCAGATACAGAACAGTCCTT 58.907 43.478 0.00 0.00 0.00 3.36
2318 2425 3.707316 AGCTCAGATACAGAACAGTCCT 58.293 45.455 0.00 0.00 0.00 3.85
2319 2426 5.300539 TGATAGCTCAGATACAGAACAGTCC 59.699 44.000 0.00 0.00 0.00 3.85
2320 2427 6.384258 TGATAGCTCAGATACAGAACAGTC 57.616 41.667 0.00 0.00 0.00 3.51
2321 2428 6.782082 TTGATAGCTCAGATACAGAACAGT 57.218 37.500 0.00 0.00 31.68 3.55
2322 2429 6.700960 CCTTTGATAGCTCAGATACAGAACAG 59.299 42.308 0.00 0.00 31.68 3.16
2323 2430 6.577103 CCTTTGATAGCTCAGATACAGAACA 58.423 40.000 0.00 0.00 31.68 3.18
2324 2431 5.465056 GCCTTTGATAGCTCAGATACAGAAC 59.535 44.000 0.00 0.00 31.68 3.01
2325 2432 5.453903 GGCCTTTGATAGCTCAGATACAGAA 60.454 44.000 0.00 0.00 31.68 3.02
2326 2433 4.039730 GGCCTTTGATAGCTCAGATACAGA 59.960 45.833 0.00 0.00 31.68 3.41
2327 2434 4.040217 AGGCCTTTGATAGCTCAGATACAG 59.960 45.833 0.00 0.00 31.68 2.74
2328 2435 3.969976 AGGCCTTTGATAGCTCAGATACA 59.030 43.478 0.00 0.00 31.68 2.29
2329 2436 4.202305 ACAGGCCTTTGATAGCTCAGATAC 60.202 45.833 0.00 0.00 31.68 2.24
2330 2437 3.969976 ACAGGCCTTTGATAGCTCAGATA 59.030 43.478 0.00 0.00 31.68 1.98
2331 2438 2.776536 ACAGGCCTTTGATAGCTCAGAT 59.223 45.455 0.00 0.00 31.68 2.90
2332 2439 2.191400 ACAGGCCTTTGATAGCTCAGA 58.809 47.619 0.00 0.00 31.68 3.27
2333 2440 2.706339 ACAGGCCTTTGATAGCTCAG 57.294 50.000 0.00 0.00 31.68 3.35
2334 2441 3.439857 AAACAGGCCTTTGATAGCTCA 57.560 42.857 0.00 0.00 0.00 4.26
2335 2442 3.129462 GGAAAACAGGCCTTTGATAGCTC 59.871 47.826 0.00 0.00 0.00 4.09
2336 2443 3.092301 GGAAAACAGGCCTTTGATAGCT 58.908 45.455 0.00 0.00 0.00 3.32
2337 2444 2.166459 GGGAAAACAGGCCTTTGATAGC 59.834 50.000 0.00 0.00 0.00 2.97
2338 2445 3.430453 TGGGAAAACAGGCCTTTGATAG 58.570 45.455 0.00 0.00 0.00 2.08
2339 2446 3.181423 ACTGGGAAAACAGGCCTTTGATA 60.181 43.478 0.00 0.00 42.75 2.15
2340 2447 2.250924 CTGGGAAAACAGGCCTTTGAT 58.749 47.619 0.00 0.00 34.84 2.57
2341 2448 1.063266 ACTGGGAAAACAGGCCTTTGA 60.063 47.619 0.00 0.00 42.75 2.69
2342 2449 1.069049 CACTGGGAAAACAGGCCTTTG 59.931 52.381 0.00 0.00 42.75 2.77
2343 2450 1.342975 ACACTGGGAAAACAGGCCTTT 60.343 47.619 0.00 0.00 42.75 3.11
2344 2451 0.261696 ACACTGGGAAAACAGGCCTT 59.738 50.000 0.00 0.00 42.75 4.35
2345 2452 0.178990 GACACTGGGAAAACAGGCCT 60.179 55.000 0.00 0.00 42.75 5.19
2346 2453 1.179174 GGACACTGGGAAAACAGGCC 61.179 60.000 0.00 0.00 42.75 5.19
2347 2454 0.178990 AGGACACTGGGAAAACAGGC 60.179 55.000 0.00 0.00 42.75 4.85
2348 2455 1.609208 CAGGACACTGGGAAAACAGG 58.391 55.000 0.00 0.00 42.75 4.00
2358 2465 1.943116 CTCTCCGCTCCAGGACACTG 61.943 65.000 0.00 0.00 44.51 3.66
2359 2466 1.680651 CTCTCCGCTCCAGGACACT 60.681 63.158 0.00 0.00 36.14 3.55
2360 2467 1.251527 TTCTCTCCGCTCCAGGACAC 61.252 60.000 0.00 0.00 36.14 3.67
2361 2468 0.324738 ATTCTCTCCGCTCCAGGACA 60.325 55.000 0.00 0.00 36.14 4.02
2362 2469 0.103937 CATTCTCTCCGCTCCAGGAC 59.896 60.000 0.00 0.00 36.14 3.85
2363 2470 0.324738 ACATTCTCTCCGCTCCAGGA 60.325 55.000 0.00 0.00 38.80 3.86
2364 2471 0.539051 AACATTCTCTCCGCTCCAGG 59.461 55.000 0.00 0.00 0.00 4.45
2365 2472 2.005451 CAAACATTCTCTCCGCTCCAG 58.995 52.381 0.00 0.00 0.00 3.86
2366 2473 1.347707 ACAAACATTCTCTCCGCTCCA 59.652 47.619 0.00 0.00 0.00 3.86
2367 2474 2.003301 GACAAACATTCTCTCCGCTCC 58.997 52.381 0.00 0.00 0.00 4.70
2368 2475 1.656095 CGACAAACATTCTCTCCGCTC 59.344 52.381 0.00 0.00 0.00 5.03
2369 2476 1.714794 CGACAAACATTCTCTCCGCT 58.285 50.000 0.00 0.00 0.00 5.52
2370 2477 0.095417 GCGACAAACATTCTCTCCGC 59.905 55.000 0.00 0.00 34.71 5.54
2371 2478 1.714794 AGCGACAAACATTCTCTCCG 58.285 50.000 0.00 0.00 0.00 4.63
2372 2479 4.222114 CAAAAGCGACAAACATTCTCTCC 58.778 43.478 0.00 0.00 0.00 3.71
2373 2480 4.848757 ACAAAAGCGACAAACATTCTCTC 58.151 39.130 0.00 0.00 0.00 3.20
2374 2481 4.900635 ACAAAAGCGACAAACATTCTCT 57.099 36.364 0.00 0.00 0.00 3.10
2375 2482 4.317348 GCAACAAAAGCGACAAACATTCTC 60.317 41.667 0.00 0.00 0.00 2.87
2376 2483 3.551485 GCAACAAAAGCGACAAACATTCT 59.449 39.130 0.00 0.00 0.00 2.40
2377 2484 3.551485 AGCAACAAAAGCGACAAACATTC 59.449 39.130 0.00 0.00 37.01 2.67
2378 2485 3.306703 CAGCAACAAAAGCGACAAACATT 59.693 39.130 0.00 0.00 37.01 2.71
2379 2486 2.859538 CAGCAACAAAAGCGACAAACAT 59.140 40.909 0.00 0.00 37.01 2.71
2380 2487 2.095008 TCAGCAACAAAAGCGACAAACA 60.095 40.909 0.00 0.00 37.01 2.83
2381 2488 2.525055 TCAGCAACAAAAGCGACAAAC 58.475 42.857 0.00 0.00 37.01 2.93
2382 2489 2.929531 TCAGCAACAAAAGCGACAAA 57.070 40.000 0.00 0.00 37.01 2.83
2383 2490 2.479389 CCTTCAGCAACAAAAGCGACAA 60.479 45.455 0.00 0.00 37.01 3.18
2384 2491 1.065401 CCTTCAGCAACAAAAGCGACA 59.935 47.619 0.00 0.00 37.01 4.35
2385 2492 1.333619 TCCTTCAGCAACAAAAGCGAC 59.666 47.619 0.00 0.00 37.01 5.19
2386 2493 1.674359 TCCTTCAGCAACAAAAGCGA 58.326 45.000 0.00 0.00 37.01 4.93
2387 2494 2.388121 CTTCCTTCAGCAACAAAAGCG 58.612 47.619 0.00 0.00 37.01 4.68
2388 2495 2.130395 GCTTCCTTCAGCAACAAAAGC 58.870 47.619 0.00 0.00 39.83 3.51
2397 2504 1.597742 TGTTCAGTGCTTCCTTCAGC 58.402 50.000 0.00 0.00 40.55 4.26
2398 2505 4.070716 AGATTGTTCAGTGCTTCCTTCAG 58.929 43.478 0.00 0.00 0.00 3.02
2399 2506 3.817084 CAGATTGTTCAGTGCTTCCTTCA 59.183 43.478 0.00 0.00 0.00 3.02
2400 2507 3.817647 ACAGATTGTTCAGTGCTTCCTTC 59.182 43.478 0.00 0.00 0.00 3.46
2401 2508 3.567164 CACAGATTGTTCAGTGCTTCCTT 59.433 43.478 0.00 0.00 33.37 3.36
2402 2509 3.144506 CACAGATTGTTCAGTGCTTCCT 58.855 45.455 0.00 0.00 33.37 3.36
2403 2510 3.141398 TCACAGATTGTTCAGTGCTTCC 58.859 45.455 0.00 0.00 38.77 3.46
2404 2511 4.060900 TCTCACAGATTGTTCAGTGCTTC 58.939 43.478 0.00 0.00 38.77 3.86
2405 2512 4.077300 TCTCACAGATTGTTCAGTGCTT 57.923 40.909 0.00 0.00 38.77 3.91
2406 2513 3.758755 TCTCACAGATTGTTCAGTGCT 57.241 42.857 0.00 0.00 38.77 4.40
2407 2514 4.818534 TTTCTCACAGATTGTTCAGTGC 57.181 40.909 0.00 0.00 38.77 4.40
2408 2515 6.962686 TCAATTTCTCACAGATTGTTCAGTG 58.037 36.000 0.00 0.00 39.89 3.66
2409 2516 6.206243 CCTCAATTTCTCACAGATTGTTCAGT 59.794 38.462 0.00 0.00 33.60 3.41
2410 2517 6.429078 TCCTCAATTTCTCACAGATTGTTCAG 59.571 38.462 0.00 0.00 33.60 3.02
2411 2518 6.298361 TCCTCAATTTCTCACAGATTGTTCA 58.702 36.000 0.00 0.00 33.60 3.18
2412 2519 6.808008 TCCTCAATTTCTCACAGATTGTTC 57.192 37.500 0.00 0.00 33.60 3.18
2413 2520 6.376581 GGATCCTCAATTTCTCACAGATTGTT 59.623 38.462 3.84 0.00 33.60 2.83
2414 2521 5.884792 GGATCCTCAATTTCTCACAGATTGT 59.115 40.000 3.84 0.00 33.60 2.71
2415 2522 6.038382 CAGGATCCTCAATTTCTCACAGATTG 59.962 42.308 12.69 0.00 33.24 2.67
2416 2523 6.120905 CAGGATCCTCAATTTCTCACAGATT 58.879 40.000 12.69 0.00 0.00 2.40
2417 2524 5.397672 CCAGGATCCTCAATTTCTCACAGAT 60.398 44.000 12.69 0.00 0.00 2.90
2418 2525 4.080695 CCAGGATCCTCAATTTCTCACAGA 60.081 45.833 12.69 0.00 0.00 3.41
2419 2526 4.080695 TCCAGGATCCTCAATTTCTCACAG 60.081 45.833 12.69 0.00 0.00 3.66
2420 2527 3.845992 TCCAGGATCCTCAATTTCTCACA 59.154 43.478 12.69 0.00 0.00 3.58
2421 2528 4.494091 TCCAGGATCCTCAATTTCTCAC 57.506 45.455 12.69 0.00 0.00 3.51
2422 2529 7.072834 TCAATATCCAGGATCCTCAATTTCTCA 59.927 37.037 12.69 0.00 0.00 3.27
2423 2530 7.456725 TCAATATCCAGGATCCTCAATTTCTC 58.543 38.462 12.69 0.00 0.00 2.87
2424 2531 7.073470 ACTCAATATCCAGGATCCTCAATTTCT 59.927 37.037 12.69 0.00 0.00 2.52
2425 2532 7.230027 ACTCAATATCCAGGATCCTCAATTTC 58.770 38.462 12.69 0.00 0.00 2.17
2426 2533 7.159201 ACTCAATATCCAGGATCCTCAATTT 57.841 36.000 12.69 0.64 0.00 1.82
2427 2534 6.776887 ACTCAATATCCAGGATCCTCAATT 57.223 37.500 12.69 6.44 0.00 2.32
2428 2535 6.214412 GGTACTCAATATCCAGGATCCTCAAT 59.786 42.308 12.69 10.85 0.00 2.57
2429 2536 5.544176 GGTACTCAATATCCAGGATCCTCAA 59.456 44.000 12.69 2.73 0.00 3.02
2430 2537 5.087323 GGTACTCAATATCCAGGATCCTCA 58.913 45.833 12.69 1.06 0.00 3.86
2431 2538 5.337788 AGGTACTCAATATCCAGGATCCTC 58.662 45.833 12.69 0.00 0.00 3.71
2432 2539 5.361630 AGGTACTCAATATCCAGGATCCT 57.638 43.478 9.02 9.02 0.00 3.24
2454 2561 1.938585 CTTGGGACTAGACTGGTGGA 58.061 55.000 0.00 0.00 0.00 4.02
2455 2562 0.250513 GCTTGGGACTAGACTGGTGG 59.749 60.000 0.00 0.00 0.00 4.61
2458 2565 1.902508 TCTTGCTTGGGACTAGACTGG 59.097 52.381 0.00 0.00 0.00 4.00
2460 2567 2.829120 GTCTCTTGCTTGGGACTAGACT 59.171 50.000 0.00 0.00 31.41 3.24
2462 2569 2.180276 GGTCTCTTGCTTGGGACTAGA 58.820 52.381 0.00 0.00 0.00 2.43
2463 2570 1.902508 TGGTCTCTTGCTTGGGACTAG 59.097 52.381 8.89 0.00 0.00 2.57
2465 2572 1.140312 TTGGTCTCTTGCTTGGGACT 58.860 50.000 8.89 0.00 0.00 3.85
2466 2573 1.981256 TTTGGTCTCTTGCTTGGGAC 58.019 50.000 1.68 1.68 0.00 4.46
2467 2574 2.091885 ACTTTTGGTCTCTTGCTTGGGA 60.092 45.455 0.00 0.00 0.00 4.37
2468 2575 2.294512 GACTTTTGGTCTCTTGCTTGGG 59.705 50.000 0.00 0.00 41.46 4.12
2469 2576 3.632855 GACTTTTGGTCTCTTGCTTGG 57.367 47.619 0.00 0.00 41.46 3.61
2850 2957 5.643348 TGTTCAGAGATTAACGCAATCATGT 59.357 36.000 11.62 0.00 44.81 3.21
2883 2990 5.317600 TGGTCCATTGGCTAATAGCAATA 57.682 39.130 14.76 0.00 44.75 1.90
2884 2991 4.183223 TGGTCCATTGGCTAATAGCAAT 57.817 40.909 14.76 8.95 44.75 3.56
3197 5927 6.379988 ACAAAAAGGACCAACTGAGTACAAAT 59.620 34.615 0.00 0.00 0.00 2.32
3202 5932 3.630312 GCACAAAAAGGACCAACTGAGTA 59.370 43.478 0.00 0.00 0.00 2.59
3231 5961 3.243301 GGGTTAGACAGATCGCGTATTGA 60.243 47.826 5.77 0.00 0.00 2.57
3403 6142 5.541953 TCCTGATCTTAGATCACCACATG 57.458 43.478 19.74 9.78 0.00 3.21
3777 6521 3.265791 CTTAGAGCAGCAAAATCCTCGT 58.734 45.455 0.00 0.00 0.00 4.18
4101 6845 6.703607 CCCATATTCCTCATCAATATACTCGC 59.296 42.308 0.00 0.00 0.00 5.03
4332 7076 9.059260 TGTTCCTTTGTATAAGAACTAAACCAC 57.941 33.333 0.00 0.00 39.45 4.16
4411 7155 6.201517 TCGCACTAATTACTACCATCGTAAC 58.798 40.000 0.00 0.00 30.44 2.50
4433 7177 4.545610 GAGAAGACCTGATGAGCTTATCG 58.454 47.826 13.27 8.28 0.00 2.92
4650 7635 8.956533 ACAAACTTTGGCAATTAGTTTTACAT 57.043 26.923 21.48 9.53 39.40 2.29
4736 7722 7.520453 GCGCATCTTGATCAAATTATAGACCAA 60.520 37.037 9.88 0.00 0.00 3.67
4765 7751 6.226787 ACAAGGAGAACATCAGAAGTAACAG 58.773 40.000 0.00 0.00 0.00 3.16
4808 7794 2.405892 AGCAAACTGAACGCATCAAC 57.594 45.000 0.00 0.00 37.67 3.18
4838 7824 4.024893 CAGTCACTAAGCAATTTGTCACGT 60.025 41.667 0.00 0.00 0.00 4.49
4848 7834 4.072131 GGAATTCACCAGTCACTAAGCAA 58.928 43.478 7.93 0.00 0.00 3.91
4936 7922 7.924947 GGCTACGAAGGTTTAAGTAACTGATAT 59.075 37.037 0.00 0.00 36.93 1.63
4946 7932 8.033038 TGCATATATAGGCTACGAAGGTTTAAG 58.967 37.037 19.22 0.00 33.54 1.85
4956 7942 3.777465 ACGGTGCATATATAGGCTACG 57.223 47.619 24.01 24.01 38.20 3.51
5062 8048 5.001232 TGCAGTTGGAAATGTTAGTACCTC 58.999 41.667 0.00 0.00 0.00 3.85
5184 8170 4.973396 TGATCATTCGTGAAGTTTGCATC 58.027 39.130 0.00 0.00 0.00 3.91
5228 8214 2.028130 CACCTACCAACAAGGCAACAA 58.972 47.619 0.00 0.00 43.14 2.83
5229 8215 1.064314 ACACCTACCAACAAGGCAACA 60.064 47.619 0.00 0.00 43.14 3.33
5230 8216 1.607148 GACACCTACCAACAAGGCAAC 59.393 52.381 0.00 0.00 43.14 4.17
5231 8217 1.477923 GGACACCTACCAACAAGGCAA 60.478 52.381 0.00 0.00 43.14 4.52
5232 8218 0.109723 GGACACCTACCAACAAGGCA 59.890 55.000 0.00 0.00 43.14 4.75
5233 8219 0.400594 AGGACACCTACCAACAAGGC 59.599 55.000 0.00 0.00 43.14 4.35
5234 8220 1.003233 GGAGGACACCTACCAACAAGG 59.997 57.143 0.00 0.00 37.44 3.61
5235 8221 1.697432 TGGAGGACACCTACCAACAAG 59.303 52.381 0.00 0.00 32.29 3.16
5319 8306 4.943705 GGGCATGAACAAGAATTCTCTACA 59.056 41.667 8.78 7.60 0.00 2.74
5467 8456 8.521176 GCCAAATTCAGAGAGATGCATTATAAT 58.479 33.333 0.00 0.00 0.00 1.28
5501 8490 7.715265 ACATACAAAGTAGTGACAGAACAAG 57.285 36.000 0.00 0.00 0.00 3.16
5538 8641 3.213206 TGTCTGAAACTCAAGCCACAT 57.787 42.857 0.00 0.00 0.00 3.21
5545 8648 6.038603 CCAAGTCTTGATTGTCTGAAACTCAA 59.961 38.462 14.42 1.32 0.00 3.02
5558 8661 4.437682 TGACCAGTTCCAAGTCTTGATT 57.562 40.909 14.42 0.00 0.00 2.57
5578 8689 7.785033 AGGCAATTTAAGAGAATTTACCCATG 58.215 34.615 0.00 0.00 0.00 3.66
5626 8738 1.962807 CAAGGTCCCAGCAATCAACAA 59.037 47.619 0.00 0.00 0.00 2.83
5664 8776 4.023291 GGATGGGAGAAAACTATGGCAAA 58.977 43.478 0.00 0.00 0.00 3.68
5673 8785 1.134946 CATTGCGGGATGGGAGAAAAC 59.865 52.381 0.00 0.00 0.00 2.43
5682 8794 2.105528 GCTTGGCATTGCGGGATG 59.894 61.111 1.91 0.00 0.00 3.51
5683 8795 2.362760 TGCTTGGCATTGCGGGAT 60.363 55.556 1.91 0.00 31.71 3.85
5684 8796 3.063704 CTGCTTGGCATTGCGGGA 61.064 61.111 12.28 0.00 38.13 5.14
5687 8799 2.506217 CAGCTGCTTGGCATTGCG 60.506 61.111 0.00 5.05 38.13 4.85
5688 8800 2.125673 CCAGCTGCTTGGCATTGC 60.126 61.111 8.66 0.00 38.13 3.56
5740 8852 9.590451 CAATGCAGAATGATTTTGTTATTACCT 57.410 29.630 0.00 0.00 39.69 3.08
5743 8855 9.304731 GAGCAATGCAGAATGATTTTGTTATTA 57.695 29.630 8.35 0.00 39.69 0.98
5749 8861 5.407502 TCTGAGCAATGCAGAATGATTTTG 58.592 37.500 8.35 0.00 39.29 2.44
5769 8881 4.346129 GAAGCAACTCGCCAAATTATCTG 58.654 43.478 0.00 0.00 44.04 2.90
5848 8960 4.101856 ACAGTACCAGTATAAGGGCAGTT 58.898 43.478 0.00 0.00 0.00 3.16
5853 8965 4.442706 CAGCAACAGTACCAGTATAAGGG 58.557 47.826 0.00 0.00 0.00 3.95
5966 9078 6.264841 AGAAGCAATCAAAGTTTCCAGATC 57.735 37.500 0.00 0.00 0.00 2.75
5967 9079 5.106396 CGAGAAGCAATCAAAGTTTCCAGAT 60.106 40.000 0.00 0.00 0.00 2.90
5968 9080 4.214119 CGAGAAGCAATCAAAGTTTCCAGA 59.786 41.667 0.00 0.00 0.00 3.86
5969 9081 4.023707 ACGAGAAGCAATCAAAGTTTCCAG 60.024 41.667 0.00 0.00 0.00 3.86
5970 9082 3.882888 ACGAGAAGCAATCAAAGTTTCCA 59.117 39.130 0.00 0.00 0.00 3.53
5971 9083 4.222114 CACGAGAAGCAATCAAAGTTTCC 58.778 43.478 0.00 0.00 0.00 3.13
5972 9084 4.222114 CCACGAGAAGCAATCAAAGTTTC 58.778 43.478 0.00 0.00 0.00 2.78
5973 9085 3.632145 ACCACGAGAAGCAATCAAAGTTT 59.368 39.130 0.00 0.00 0.00 2.66
5974 9086 3.214328 ACCACGAGAAGCAATCAAAGTT 58.786 40.909 0.00 0.00 0.00 2.66
5975 9087 2.808543 GACCACGAGAAGCAATCAAAGT 59.191 45.455 0.00 0.00 0.00 2.66
5976 9088 2.160417 GGACCACGAGAAGCAATCAAAG 59.840 50.000 0.00 0.00 0.00 2.77
5977 9089 2.151202 GGACCACGAGAAGCAATCAAA 58.849 47.619 0.00 0.00 0.00 2.69
5978 9090 1.610624 GGGACCACGAGAAGCAATCAA 60.611 52.381 0.00 0.00 0.00 2.57
5979 9091 0.036388 GGGACCACGAGAAGCAATCA 60.036 55.000 0.00 0.00 0.00 2.57
5980 9092 2.768834 GGGACCACGAGAAGCAATC 58.231 57.895 0.00 0.00 0.00 2.67
5992 9104 5.074205 TATCAGATGGATCCAGGGGACCA 62.074 52.174 21.33 6.07 44.74 4.02
5993 9105 2.495383 TATCAGATGGATCCAGGGGACC 60.495 54.545 21.33 4.93 43.35 4.46
5994 9106 1.739750 ATCAGATGGATCCAGGGGAC 58.260 55.000 21.33 8.79 32.98 4.46
5995 9107 3.654146 TTATCAGATGGATCCAGGGGA 57.346 47.619 21.33 16.37 37.44 4.81
5996 9108 3.848377 TCATTATCAGATGGATCCAGGGG 59.152 47.826 21.33 11.47 37.44 4.79
5997 9109 5.429109 AGATCATTATCAGATGGATCCAGGG 59.571 44.000 21.33 11.83 37.44 4.45
5998 9110 6.350103 CAGATCATTATCAGATGGATCCAGG 58.650 44.000 21.33 12.20 37.44 4.45
5999 9111 6.156429 TCCAGATCATTATCAGATGGATCCAG 59.844 42.308 21.33 6.88 37.44 3.86
6000 9112 6.027482 TCCAGATCATTATCAGATGGATCCA 58.973 40.000 18.88 18.88 37.44 3.41
6001 9113 6.556974 TCCAGATCATTATCAGATGGATCC 57.443 41.667 4.20 4.20 37.44 3.36
6006 9118 9.117183 TGAAAGTTTCCAGATCATTATCAGATG 57.883 33.333 13.01 0.00 34.28 2.90
6014 9126 7.363268 GCAGGTATTGAAAGTTTCCAGATCATT 60.363 37.037 13.01 0.00 0.00 2.57
6016 9128 5.415701 GCAGGTATTGAAAGTTTCCAGATCA 59.584 40.000 13.01 0.00 0.00 2.92
6042 9154 3.689347 TGACAAGATGGCATTGCTTACT 58.311 40.909 8.82 2.75 24.43 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.