AutoCloner

Multiple sequence alignment - TraesCS5D01G099700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G099700	chr5D	100.000	3611	0	0	1	3611	111993382	111996992	0.000000e+00	6669
1	TraesCS5D01G099700	chr5B	94.782	2204	79	11	45	2242	121181312	121183485	0.000000e+00	3400
2	TraesCS5D01G099700	chr5B	96.027	881	17	6	2236	3116	121197847	121198709	0.000000e+00	1417
3	TraesCS5D01G099700	chr5A	96.084	1864	58	8	875	2725	115013496	115015357	0.000000e+00	3024
4	TraesCS5D01G099700	chr5A	90.745	886	66	10	1	878	115012337	115013214	0.000000e+00	1168
5	TraesCS5D01G099700	chr2D	97.586	497	12	0	3115	3611	189382891	189383387	0.000000e+00	852
6	TraesCS5D01G099700	chr2D	96.579	497	17	0	3115	3611	189382753	189382257	0.000000e+00	824
7	TraesCS5D01G099700	chr1D	97.384	497	13	0	3115	3611	10350733	10351229	0.000000e+00	846
8	TraesCS5D01G099700	chr6D	96.386	498	17	1	3115	3611	248263413	248263910	0.000000e+00	819
9	TraesCS5D01G099700	chr3B	94.589	499	25	2	3114	3611	401237574	401237077	0.000000e+00	771
10	TraesCS5D01G099700	chr3B	78.589	822	139	31	1788	2586	583825491	583824684	3.220000e-140	508
11	TraesCS5D01G099700	chr2B	87.549	506	48	12	3115	3611	178770832	178771331	4.040000e-159	571
12	TraesCS5D01G099700	chr3A	79.562	822	131	33	1788	2586	586792331	586791524	1.470000e-153	553
13	TraesCS5D01G099700	chr3D	79.197	822	134	32	1788	2586	445105922	445105115	1.480000e-148	536
14	TraesCS5D01G099700	chr7B	85.632	522	47	14	3115	3611	352536545	352536027	1.150000e-144	523
15	TraesCS5D01G099700	chr7B	85.057	522	48	12	3115	3611	374718876	374718360	4.160000e-139	505
16	TraesCS5D01G099700	chr7B	84.644	267	29	9	3115	3373	244643075	244642813	4.630000e-64	255
17	TraesCS5D01G099700	chr6B	85.277	523	50	13	3114	3611	666787534	666787014	6.910000e-142	514
18	TraesCS5D01G099700	chr4D	81.271	598	87	22	2008	2595	131041707	131041125	9.140000e-126	460
19	TraesCS5D01G099700	chr4A	81.104	598	88	22	2008	2595	435442544	435443126	4.250000e-124	455
20	TraesCS5D01G099700	chrUn	80.667	600	88	23	2008	2595	59600444	59599861	1.190000e-119	440
21	TraesCS5D01G099700	chrUn	80.978	552	78	23	2054	2594	383555394	383554859	2.590000e-111	412

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G099700	chr5D	111993382	111996992	3610	False	6669	6669	100.0000	1	3611	1	chr5D.!!$F1	3610
1	TraesCS5D01G099700	chr5B	121181312	121183485	2173	False	3400	3400	94.7820	45	2242	1	chr5B.!!$F1	2197
2	TraesCS5D01G099700	chr5B	121197847	121198709	862	False	1417	1417	96.0270	2236	3116	1	chr5B.!!$F2	880
3	TraesCS5D01G099700	chr5A	115012337	115015357	3020	False	2096	3024	93.4145	1	2725	2	chr5A.!!$F1	2724
4	TraesCS5D01G099700	chr3B	583824684	583825491	807	True	508	508	78.5890	1788	2586	1	chr3B.!!$R2	798
5	TraesCS5D01G099700	chr3A	586791524	586792331	807	True	553	553	79.5620	1788	2586	1	chr3A.!!$R1	798
6	TraesCS5D01G099700	chr3D	445105115	445105922	807	True	536	536	79.1970	1788	2586	1	chr3D.!!$R1	798
7	TraesCS5D01G099700	chr7B	352536027	352536545	518	True	523	523	85.6320	3115	3611	1	chr7B.!!$R2	496
8	TraesCS5D01G099700	chr7B	374718360	374718876	516	True	505	505	85.0570	3115	3611	1	chr7B.!!$R3	496
9	TraesCS5D01G099700	chr6B	666787014	666787534	520	True	514	514	85.2770	3114	3611	1	chr6B.!!$R1	497
10	TraesCS5D01G099700	chr4D	131041125	131041707	582	True	460	460	81.2710	2008	2595	1	chr4D.!!$R1	587
11	TraesCS5D01G099700	chr4A	435442544	435443126	582	False	455	455	81.1040	2008	2595	1	chr4A.!!$F1	587
12	TraesCS5D01G099700	chrUn	59599861	59600444	583	True	440	440	80.6670	2008	2595	1	chrUn.!!$R1	587
13	TraesCS5D01G099700	chrUn	383554859	383555394	535	True	412	412	80.9780	2054	2594	1	chrUn.!!$R2	540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
337	339	0.104120	CATCATACCCGAAGCCGACA	59.896	55.000	0.0	0.0	38.22	4.35	F
498	501	1.133025	CATGGGGAGCACATTTTCGAC	59.867	52.381	0.0	0.0	0.00	4.20	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1584	1885	1.348775	CCCCTTCCTCCATGAGTCCC	61.349	65.00	0.0	0.0	0.0	4.46	R
2661	2996	9.579932	AAATTTGTCCTGTCTCTCTCTATTTTT	57.420	29.63	0.0	0.0	0.0	1.94	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	40	0.554305	TCAGAAGCCATGGCCATCAT	59.446	50.000	33.14	11.80	43.17	2.45
74	75	2.032808	TCAGTCGCTCGAGTATGAATCG	60.033	50.000	15.13	7.15	41.50	3.34
110	111	1.300233	CTCTCCGCGATAACAGCCC	60.300	63.158	8.23	0.00	0.00	5.19
153	154	2.175715	AGCTTTCCAACCTCTCCAAAGT	59.824	45.455	0.00	0.00	0.00	2.66
188	189	5.696724	CGGGACTCCAAATAACATGACTATC	59.303	44.000	0.00	0.00	0.00	2.08
263	264	2.766313	TGGCATAGATCACGTAATGGC	58.234	47.619	0.00	11.22	43.18	4.40
331	333	1.620819	CCCTCTCCATCATACCCGAAG	59.379	57.143	0.00	0.00	0.00	3.79
337	339	0.104120	CATCATACCCGAAGCCGACA	59.896	55.000	0.00	0.00	38.22	4.35
430	432	1.134551	GCCGCCTTCTCATTCTTCTCT	60.135	52.381	0.00	0.00	0.00	3.10
498	501	1.133025	CATGGGGAGCACATTTTCGAC	59.867	52.381	0.00	0.00	0.00	4.20
508	511	3.318017	CACATTTTCGACGAAGGTCTCT	58.682	45.455	10.61	0.00	41.16	3.10
523	526	3.201266	AGGTCTCTCCATCGAACTAGTCT	59.799	47.826	0.00	0.00	39.02	3.24
694	697	3.364366	GGAGTTTGATCTTTGAGCACGTG	60.364	47.826	12.28	12.28	0.00	4.49
720	725	8.999431	GGTAACAAATATTTCTTCTCAGTGTCA	58.001	33.333	0.00	0.00	0.00	3.58
769	774	2.846193	TGGCCTCAAAGTGACACTTAC	58.154	47.619	20.85	8.56	37.47	2.34
788	793	6.307800	CACTTACTGCCAAAATGGAATTAACG	59.692	38.462	0.00	0.00	40.96	3.18
795	800	5.694458	GCCAAAATGGAATTAACGAACAGTT	59.306	36.000	0.00	0.00	40.96	3.16
1584	1885	1.367840	GCTGTGGGGGCTCTATACG	59.632	63.158	0.00	0.00	0.00	3.06
1651	1952	2.329539	GAAGATCATGGAGGGCGCCA	62.330	60.000	30.85	7.96	43.23	5.69
1716	2017	2.351418	TCTTTGCAACAACACTCTGTCG	59.649	45.455	0.00	0.00	0.00	4.35
2559	2890	3.515502	TCACCAGGAAGGACAAGTATCTG	59.484	47.826	0.00	0.00	41.22	2.90
2647	2982	3.165058	AGAATTAGATGCAAGCGTCGA	57.835	42.857	8.48	0.88	37.08	4.20
2699	3039	3.748568	AGGACAAATTTGAGAACGAGAGC	59.251	43.478	24.64	1.27	0.00	4.09
2756	3096	4.748701	ACTACCAGTCCCTCTGTTAAAGA	58.251	43.478	0.00	0.00	42.19	2.52
2757	3097	5.342866	ACTACCAGTCCCTCTGTTAAAGAT	58.657	41.667	0.00	0.00	42.19	2.40
2878	3218	9.683069	AGTGAAAGAAATGACACAAATAATGTC	57.317	29.630	0.00	0.00	45.58	3.06
2900	3240	8.245195	TGTCTGCATATAATGTTCAGTAGGTA	57.755	34.615	0.00	0.00	0.00	3.08
2903	3243	8.577296	TCTGCATATAATGTTCAGTAGGTAGTC	58.423	37.037	0.00	0.00	0.00	2.59
2917	3257	5.942872	GTAGGTAGTCTTACGTACTGCAAA	58.057	41.667	7.25	0.00	43.11	3.68
2918	3258	5.056894	AGGTAGTCTTACGTACTGCAAAG	57.943	43.478	7.25	0.00	31.90	2.77
2919	3259	4.082354	AGGTAGTCTTACGTACTGCAAAGG	60.082	45.833	7.25	0.00	31.90	3.11
2920	3260	3.314541	AGTCTTACGTACTGCAAAGGG	57.685	47.619	0.00	0.00	0.00	3.95
2921	3261	1.730612	GTCTTACGTACTGCAAAGGGC	59.269	52.381	0.00	0.00	45.13	5.19
2943	3283	3.685550	CGCCTCCAATTGTTCTCCCTAAT	60.686	47.826	4.43	0.00	0.00	1.73
3062	3402	1.760192	AGAGCTGCCAATTCATCACC	58.240	50.000	0.00	0.00	0.00	4.02
3123	3463	3.707102	GCTACCAGACAAATACTCCCTCT	59.293	47.826	0.00	0.00	0.00	3.69
3131	3471	3.775316	ACAAATACTCCCTCTGTTCCGAT	59.225	43.478	0.00	0.00	0.00	4.18
3132	3472	4.225267	ACAAATACTCCCTCTGTTCCGATT	59.775	41.667	0.00	0.00	0.00	3.34
3135	3475	6.749036	AATACTCCCTCTGTTCCGATTTAT	57.251	37.500	0.00	0.00	0.00	1.40
3138	3478	6.555463	ACTCCCTCTGTTCCGATTTATTTA	57.445	37.500	0.00	0.00	0.00	1.40
3140	3480	7.574607	ACTCCCTCTGTTCCGATTTATTTATT	58.425	34.615	0.00	0.00	0.00	1.40
3142	3482	7.343357	TCCCTCTGTTCCGATTTATTTATTGT	58.657	34.615	0.00	0.00	0.00	2.71
3149	3489	5.520751	TCCGATTTATTTATTGTTGGGGGT	58.479	37.500	0.00	0.00	0.00	4.95
3150	3490	5.958987	TCCGATTTATTTATTGTTGGGGGTT	59.041	36.000	0.00	0.00	0.00	4.11
3153	3493	6.474102	CGATTTATTTATTGTTGGGGGTTTCG	59.526	38.462	0.00	0.00	0.00	3.46
3164	3504	1.368579	GGGTTTCGTTCCGACCAGA	59.631	57.895	0.00	0.00	34.89	3.86
3171	3511	2.616960	TCGTTCCGACCAGATGAAATG	58.383	47.619	0.00	0.00	0.00	2.32
3173	3513	1.401905	GTTCCGACCAGATGAAATGGC	59.598	52.381	0.00	0.00	41.87	4.40
3184	3524	3.370978	AGATGAAATGGCGTGAAAGTACG	59.629	43.478	0.00	0.00	46.28	3.67
3185	3525	1.801771	TGAAATGGCGTGAAAGTACGG	59.198	47.619	0.00	0.00	43.87	4.02
3186	3526	2.070783	GAAATGGCGTGAAAGTACGGA	58.929	47.619	0.00	0.00	43.87	4.69
3188	3528	2.172851	ATGGCGTGAAAGTACGGAAA	57.827	45.000	0.00	0.00	43.87	3.13
3195	3535	3.368739	CGTGAAAGTACGGAAATACCCCT	60.369	47.826	0.00	0.00	40.22	4.79
3202	3542	4.472108	AGTACGGAAATACCCCTGATTTGA	59.528	41.667	0.00	0.00	34.64	2.69
3206	3546	5.719563	ACGGAAATACCCCTGATTTGAAATT	59.280	36.000	0.00	0.00	34.64	1.82
3207	3547	6.042143	CGGAAATACCCCTGATTTGAAATTG	58.958	40.000	0.00	0.00	34.64	2.32
3211	3551	7.976414	AATACCCCTGATTTGAAATTGATCA	57.024	32.000	0.00	0.00	0.00	2.92
3233	3573	4.415332	GCGTCTTCCTCCGTCGCA	62.415	66.667	0.00	0.00	45.01	5.10
3439	3802	3.889134	CTGCTCCGCCACAGCTTCA	62.889	63.158	0.00	0.00	37.79	3.02
3448	3811	2.016096	GCCACAGCTTCAGATCCTTCC	61.016	57.143	0.00	0.00	35.50	3.46
3457	3820	1.307691	AGATCCTTCCCTGCTGGCT	60.308	57.895	3.63	0.00	0.00	4.75
3475	3838	3.733507	TACAGATCCCTCGCCGGCT	62.734	63.158	26.68	3.45	0.00	5.52
3555	3919	1.101049	CCTCTCGTCTCTGCTCCTCC	61.101	65.000	0.00	0.00	0.00	4.30

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	2.719979	GCCATGGCTTCTGATGCG	59.280	61.111	29.98	0.00	38.26	4.73
57	58	0.591659	CCCGATTCATACTCGAGCGA	59.408	55.000	13.61	3.82	38.38	4.93
74	75	4.452733	CGTGACGAAGAGGGGCCC	62.453	72.222	17.12	17.12	0.00	5.80
102	103	1.675219	GAGTTGGACCGGGCTGTTA	59.325	57.895	7.57	0.00	0.00	2.41
110	111	2.358737	GGCACAGGAGTTGGACCG	60.359	66.667	0.00	0.00	0.00	4.79
188	189	2.301346	ACTTGTTGAAAGTGGCCTCAG	58.699	47.619	3.32	0.00	0.00	3.35
263	264	5.932883	GGCCTCGAAGGTATATTTTCTAAGG	59.067	44.000	0.00	10.17	37.80	2.69
337	339	0.036732	AGTGTGATGTTGGCCGTCAT	59.963	50.000	11.46	11.46	41.07	3.06
346	348	2.030027	TCCAGGGAGAGTGTGATGTT	57.970	50.000	0.00	0.00	0.00	2.71
430	432	2.409064	TGTTGGGACTCAAGTAGGGA	57.591	50.000	0.00	0.00	35.80	4.20
508	511	2.093075	ACTCCGAGACTAGTTCGATGGA	60.093	50.000	21.34	13.12	40.36	3.41
523	526	2.847234	AACCCTGTGGCACTCCGA	60.847	61.111	19.83	0.00	33.59	4.55
663	666	5.423610	TCAAAGATCAAACTCCAAAAACCCA	59.576	36.000	0.00	0.00	0.00	4.51
694	697	8.999431	TGACACTGAGAAGAAATATTTGTTACC	58.001	33.333	10.31	6.44	0.00	2.85
709	712	7.770433	TCAAAAAGAGATCTTTGACACTGAGAA	59.230	33.333	8.53	0.00	44.69	2.87
742	747	3.072330	TGTCACTTTGAGGCCATAAGTCA	59.928	43.478	5.01	0.00	30.08	3.41
769	774	5.226396	TGTTCGTTAATTCCATTTTGGCAG	58.774	37.500	0.00	0.00	37.47	4.85
788	793	1.314730	TTTTGGCGAGGGAACTGTTC	58.685	50.000	12.05	12.05	44.43	3.18
833	843	2.959030	TGCTAACAGACAGACAGACAGT	59.041	45.455	0.00	0.00	0.00	3.55
834	844	3.650070	TGCTAACAGACAGACAGACAG	57.350	47.619	0.00	0.00	0.00	3.51
835	845	4.400529	TTTGCTAACAGACAGACAGACA	57.599	40.909	0.00	0.00	0.00	3.41
836	846	5.931441	ATTTTGCTAACAGACAGACAGAC	57.069	39.130	0.00	0.00	0.00	3.51
837	847	5.177511	CGAATTTTGCTAACAGACAGACAGA	59.822	40.000	0.00	0.00	0.00	3.41
952	1250	5.916320	TGTAGTTGTCGCCGTGTTATATATG	59.084	40.000	0.00	0.00	0.00	1.78
961	1259	2.451132	CTAGATGTAGTTGTCGCCGTG	58.549	52.381	0.00	0.00	0.00	4.94
1016	1314	2.084546	GGAAGTTGGGGAAGATGAACG	58.915	52.381	0.00	0.00	0.00	3.95
1584	1885	1.348775	CCCCTTCCTCCATGAGTCCC	61.349	65.000	0.00	0.00	0.00	4.46
2661	2996	9.579932	AAATTTGTCCTGTCTCTCTCTATTTTT	57.420	29.630	0.00	0.00	0.00	1.94
2675	3010	4.703897	TCTCGTTCTCAAATTTGTCCTGT	58.296	39.130	17.47	0.00	0.00	4.00
2683	3023	3.406764	AGCAAGCTCTCGTTCTCAAATT	58.593	40.909	0.00	0.00	0.00	1.82
2878	3218	8.580720	AGACTACCTACTGAACATTATATGCAG	58.419	37.037	0.00	0.00	0.00	4.41
2900	3240	2.612221	GCCCTTTGCAGTACGTAAGACT	60.612	50.000	0.00	0.00	40.77	3.24
2903	3243	0.719465	CGCCCTTTGCAGTACGTAAG	59.281	55.000	0.00	0.00	41.33	2.34
2913	3253	2.649129	AATTGGAGGCGCCCTTTGC	61.649	57.895	26.15	11.32	31.76	3.68
2917	3257	1.678970	GAACAATTGGAGGCGCCCT	60.679	57.895	26.15	10.99	36.03	5.19
2918	3258	1.657751	GAGAACAATTGGAGGCGCCC	61.658	60.000	26.15	15.07	34.97	6.13
2919	3259	1.657751	GGAGAACAATTGGAGGCGCC	61.658	60.000	21.89	21.89	37.10	6.53
2920	3260	1.657751	GGGAGAACAATTGGAGGCGC	61.658	60.000	10.83	0.00	0.00	6.53
2921	3261	0.035056	AGGGAGAACAATTGGAGGCG	60.035	55.000	10.83	0.00	0.00	5.52
2922	3262	3.366052	TTAGGGAGAACAATTGGAGGC	57.634	47.619	10.83	0.00	0.00	4.70
2923	3263	5.264395	ACAATTAGGGAGAACAATTGGAGG	58.736	41.667	10.83	0.00	41.70	4.30
2924	3264	5.358160	GGACAATTAGGGAGAACAATTGGAG	59.642	44.000	10.83	0.00	41.70	3.86
2925	3265	5.222233	TGGACAATTAGGGAGAACAATTGGA	60.222	40.000	10.83	0.00	41.70	3.53
3062	3402	3.727726	GGTCAATTTGGGTCCAACTTTG	58.272	45.455	13.96	13.96	35.46	2.77
3123	3463	6.127310	CCCCCAACAATAAATAAATCGGAACA	60.127	38.462	0.00	0.00	0.00	3.18
3131	3471	6.667558	ACGAAACCCCCAACAATAAATAAA	57.332	33.333	0.00	0.00	0.00	1.40
3132	3472	6.295180	GGAACGAAACCCCCAACAATAAATAA	60.295	38.462	0.00	0.00	0.00	1.40
3135	3475	3.321396	GGAACGAAACCCCCAACAATAAA	59.679	43.478	0.00	0.00	0.00	1.40
3138	3478	1.334160	GGAACGAAACCCCCAACAAT	58.666	50.000	0.00	0.00	0.00	2.71
3140	3480	4.583086	GGAACGAAACCCCCAACA	57.417	55.556	0.00	0.00	0.00	3.33
3153	3493	1.401905	GCCATTTCATCTGGTCGGAAC	59.598	52.381	0.00	0.00	36.10	3.62
3164	3504	2.418628	CCGTACTTTCACGCCATTTCAT	59.581	45.455	0.00	0.00	40.59	2.57
3171	3511	2.349580	GGTATTTCCGTACTTTCACGCC	59.650	50.000	0.00	0.00	40.59	5.68
3173	3513	2.931969	GGGGTATTTCCGTACTTTCACG	59.068	50.000	0.00	0.00	41.59	4.35
3184	3524	7.181569	TCAATTTCAAATCAGGGGTATTTCC	57.818	36.000	0.00	0.00	0.00	3.13
3185	3525	8.477256	TGATCAATTTCAAATCAGGGGTATTTC	58.523	33.333	0.00	0.00	0.00	2.17
3186	3526	8.378115	TGATCAATTTCAAATCAGGGGTATTT	57.622	30.769	0.00	0.00	0.00	1.40
3188	3528	7.592885	CTGATCAATTTCAAATCAGGGGTAT	57.407	36.000	0.00	0.00	41.65	2.73
3195	3535	4.096833	CGCCTCCTGATCAATTTCAAATCA	59.903	41.667	0.00	0.00	0.00	2.57
3202	3542	3.274288	GAAGACGCCTCCTGATCAATTT	58.726	45.455	0.00	0.00	0.00	1.82
3206	3546	0.324738	AGGAAGACGCCTCCTGATCA	60.325	55.000	0.00	0.00	30.76	2.92
3207	3547	2.510664	AGGAAGACGCCTCCTGATC	58.489	57.895	0.00	0.00	30.76	2.92
3434	3797	0.545646	AGCAGGGAAGGATCTGAAGC	59.454	55.000	0.00	0.00	33.11	3.86
3439	3802	0.030705	TAGCCAGCAGGGAAGGATCT	60.031	55.000	0.00	0.00	40.01	2.75
3448	3811	1.053264	AGGGATCTGTAGCCAGCAGG	61.053	60.000	0.00	0.00	38.66	4.85
3457	3820	3.224324	GCCGGCGAGGGATCTGTA	61.224	66.667	12.58	0.00	41.48	2.74
3475	3838	2.204291	ATTGGAGTGGGGGAGGCA	60.204	61.111	0.00	0.00	0.00	4.75
3555	3919	4.197750	CAGATTCTCTTGATTGGAGTGGG	58.802	47.826	0.00	0.00	33.06	4.61

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.