Multiple sequence alignment - TraesCS5D01G099400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G099400 chr5D 100.000 5280 0 0 1 5280 111942893 111948172 0.000000e+00 9751.0
1 TraesCS5D01G099400 chr5D 95.217 690 28 3 1 690 395296426 395297110 0.000000e+00 1086.0
2 TraesCS5D01G099400 chr5D 98.958 192 0 1 2622 2811 111945325 111945516 5.060000e-90 342.0
3 TraesCS5D01G099400 chr5D 98.958 192 0 1 2433 2624 111945514 111945703 5.060000e-90 342.0
4 TraesCS5D01G099400 chr5D 96.098 205 7 1 4991 5194 111947779 111947983 3.050000e-87 333.0
5 TraesCS5D01G099400 chr5D 96.098 205 7 1 4887 5091 111947883 111948086 3.050000e-87 333.0
6 TraesCS5D01G099400 chr5D 93.269 104 6 1 5092 5194 111947777 111947880 9.160000e-33 152.0
7 TraesCS5D01G099400 chr5D 93.269 104 6 1 4885 4988 111947984 111948086 9.160000e-33 152.0
8 TraesCS5D01G099400 chr5B 94.651 2075 51 26 2622 4662 120947264 120949312 0.000000e+00 3162.0
9 TraesCS5D01G099400 chr5B 92.969 1081 48 14 830 1901 120945708 120946769 0.000000e+00 1550.0
10 TraesCS5D01G099400 chr5B 94.935 691 31 3 1937 2624 120946766 120947455 0.000000e+00 1079.0
11 TraesCS5D01G099400 chr5B 85.396 404 53 5 2191 2591 120547738 120548138 1.060000e-111 414.0
12 TraesCS5D01G099400 chr5B 80.100 598 85 21 3874 4464 120549190 120549760 1.060000e-111 414.0
13 TraesCS5D01G099400 chr5B 91.403 221 17 2 4664 4883 120949463 120949682 8.590000e-78 302.0
14 TraesCS5D01G099400 chr5B 92.632 190 13 1 5092 5280 120950237 120950426 6.740000e-69 272.0
15 TraesCS5D01G099400 chr5B 76.694 369 66 11 2622 2975 120547980 120548343 2.510000e-43 187.0
16 TraesCS5D01G099400 chr5B 96.040 101 4 0 4991 5091 120950239 120950339 1.180000e-36 165.0
17 TraesCS5D01G099400 chr5B 91.453 117 9 1 4872 4988 120950224 120950339 5.470000e-35 159.0
18 TraesCS5D01G099400 chr5A 94.910 1945 51 22 2622 4525 114681710 114683647 0.000000e+00 3000.0
19 TraesCS5D01G099400 chr5A 91.920 1349 72 14 722 2060 114679933 114681254 0.000000e+00 1853.0
20 TraesCS5D01G099400 chr5A 95.238 567 26 1 2059 2624 114681335 114681901 0.000000e+00 896.0
21 TraesCS5D01G099400 chr5A 91.022 323 26 3 4668 4988 114691052 114691373 2.920000e-117 433.0
22 TraesCS5D01G099400 chr5A 94.737 190 9 1 5092 5280 114691271 114691460 1.440000e-75 294.0
23 TraesCS5D01G099400 chr5A 95.050 101 5 0 4991 5091 114691273 114691373 5.470000e-35 159.0
24 TraesCS5D01G099400 chr5A 90.588 85 3 2 4510 4593 114690974 114691054 2.010000e-19 108.0
25 TraesCS5D01G099400 chr1D 95.520 692 27 4 1 691 340668450 340669138 0.000000e+00 1103.0
26 TraesCS5D01G099400 chr1D 94.653 692 34 3 1 692 296691113 296690425 0.000000e+00 1070.0
27 TraesCS5D01G099400 chr1D 90.099 101 9 1 4991 5091 59136810 59136711 4.290000e-26 130.0
28 TraesCS5D01G099400 chr1D 90.698 43 4 0 3823 3865 454856604 454856562 2.050000e-04 58.4
29 TraesCS5D01G099400 chr3D 95.507 690 29 2 1 690 448746887 448746200 0.000000e+00 1101.0
30 TraesCS5D01G099400 chr3D 95.072 690 31 3 1 689 599230635 599231322 0.000000e+00 1083.0
31 TraesCS5D01G099400 chr3D 85.106 188 22 5 5092 5278 264714711 264714529 2.510000e-43 187.0
32 TraesCS5D01G099400 chr4D 95.501 689 28 2 1 689 391832735 391833420 0.000000e+00 1098.0
33 TraesCS5D01G099400 chr4D 95.342 687 28 4 1 686 413045707 413046390 0.000000e+00 1088.0
34 TraesCS5D01G099400 chr4D 90.526 95 7 2 4997 5091 353046129 353046037 2.000000e-24 124.0
35 TraesCS5D01G099400 chr4D 100.000 28 0 0 719 746 488745654 488745627 1.000000e-02 52.8
36 TraesCS5D01G099400 chr2B 95.224 691 29 4 1 689 651356193 651356881 0.000000e+00 1090.0
37 TraesCS5D01G099400 chr2B 77.640 161 29 4 5090 5248 385196497 385196342 2.020000e-14 91.6
38 TraesCS5D01G099400 chr2B 95.122 41 2 0 3823 3863 20142823 20142863 1.230000e-06 65.8
39 TraesCS5D01G099400 chr4B 94.798 692 30 6 1 690 379824252 379823565 0.000000e+00 1074.0
40 TraesCS5D01G099400 chr4B 91.089 101 8 1 4991 5091 436506428 436506329 9.220000e-28 135.0
41 TraesCS5D01G099400 chr4B 95.556 45 1 1 3823 3867 139759780 139759823 2.640000e-08 71.3
42 TraesCS5D01G099400 chr3B 85.561 187 22 4 5092 5278 335853361 335853180 1.940000e-44 191.0
43 TraesCS5D01G099400 chr3B 90.909 44 4 0 3822 3865 384890755 384890712 5.710000e-05 60.2
44 TraesCS5D01G099400 chr3A 84.492 187 24 4 5092 5278 325304814 325304633 4.200000e-41 180.0
45 TraesCS5D01G099400 chr3A 77.622 286 55 7 4683 4963 212742055 212741774 1.180000e-36 165.0
46 TraesCS5D01G099400 chr4A 90.099 101 9 1 4991 5091 112581189 112581288 4.290000e-26 130.0
47 TraesCS5D01G099400 chr1B 89.888 89 8 1 4991 5079 285340660 285340573 4.320000e-21 113.0
48 TraesCS5D01G099400 chr1B 93.333 45 1 2 3823 3867 18211209 18211167 1.230000e-06 65.8
49 TraesCS5D01G099400 chr6B 95.455 44 2 0 3823 3866 706132696 706132653 2.640000e-08 71.3
50 TraesCS5D01G099400 chr2D 79.048 105 16 3 5154 5257 317590454 317590355 3.410000e-07 67.6
51 TraesCS5D01G099400 chr7D 95.000 40 2 0 3823 3862 115092436 115092475 4.410000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G099400 chr5D 111942893 111948172 5279 False 1629.285714 9751 96.664286 1 5280 7 chr5D.!!$F2 5279
1 TraesCS5D01G099400 chr5D 395296426 395297110 684 False 1086.000000 1086 95.217000 1 690 1 chr5D.!!$F1 689
2 TraesCS5D01G099400 chr5B 120945708 120950426 4718 False 955.571429 3162 93.440429 830 5280 7 chr5B.!!$F2 4450
3 TraesCS5D01G099400 chr5B 120547738 120549760 2022 False 338.333333 414 80.730000 2191 4464 3 chr5B.!!$F1 2273
4 TraesCS5D01G099400 chr5A 114679933 114683647 3714 False 1916.333333 3000 94.022667 722 4525 3 chr5A.!!$F1 3803
5 TraesCS5D01G099400 chr1D 340668450 340669138 688 False 1103.000000 1103 95.520000 1 691 1 chr1D.!!$F1 690
6 TraesCS5D01G099400 chr1D 296690425 296691113 688 True 1070.000000 1070 94.653000 1 692 1 chr1D.!!$R2 691
7 TraesCS5D01G099400 chr3D 448746200 448746887 687 True 1101.000000 1101 95.507000 1 690 1 chr3D.!!$R2 689
8 TraesCS5D01G099400 chr3D 599230635 599231322 687 False 1083.000000 1083 95.072000 1 689 1 chr3D.!!$F1 688
9 TraesCS5D01G099400 chr4D 391832735 391833420 685 False 1098.000000 1098 95.501000 1 689 1 chr4D.!!$F1 688
10 TraesCS5D01G099400 chr4D 413045707 413046390 683 False 1088.000000 1088 95.342000 1 686 1 chr4D.!!$F2 685
11 TraesCS5D01G099400 chr2B 651356193 651356881 688 False 1090.000000 1090 95.224000 1 689 1 chr2B.!!$F2 688
12 TraesCS5D01G099400 chr4B 379823565 379824252 687 True 1074.000000 1074 94.798000 1 690 1 chr4B.!!$R1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 854 1.933500 GCGACTTCGTGAGCTTTACCA 60.934 52.381 0.0 0.0 42.22 3.25 F
1284 1296 0.035343 GGGGCTGTCTAGGGTTTGAC 60.035 60.000 0.0 0.0 0.00 3.18 F
2664 2771 0.037590 TTGGGTCCGTTCTCATTGGG 59.962 55.000 0.0 0.0 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2730 2837 0.034337 CCCCGGGAACATACCATACG 59.966 60.000 26.32 0.0 0.00 3.06 R
2733 2840 0.622154 TGACCCCGGGAACATACCAT 60.622 55.000 26.32 0.0 0.00 3.55 R
4328 4569 1.135083 CATCTTCGCAACTCGTAGGGT 60.135 52.381 0.00 0.0 36.43 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 53 5.615544 CGCGATGAGAAATCTGTTGTTTTCT 60.616 40.000 0.00 0.00 41.94 2.52
525 533 5.147330 ACTTAAATATGATCCGCGGATGA 57.853 39.130 43.46 36.54 34.60 2.92
530 538 8.554835 TTAAATATGATCCGCGGATGAAATAA 57.445 30.769 43.46 27.38 34.60 1.40
599 609 5.479306 GGTGTGACTTAAATCTAGACTGCA 58.521 41.667 0.00 0.00 0.00 4.41
702 713 8.743085 TTAGGTAGAGATATTCGTTGTACTGT 57.257 34.615 0.00 0.00 0.00 3.55
703 714 7.642082 AGGTAGAGATATTCGTTGTACTGTT 57.358 36.000 0.00 0.00 0.00 3.16
704 715 8.064336 AGGTAGAGATATTCGTTGTACTGTTT 57.936 34.615 0.00 0.00 0.00 2.83
705 716 8.529476 AGGTAGAGATATTCGTTGTACTGTTTT 58.471 33.333 0.00 0.00 0.00 2.43
706 717 9.148104 GGTAGAGATATTCGTTGTACTGTTTTT 57.852 33.333 0.00 0.00 0.00 1.94
749 760 8.597167 TGTACTATCATGATTAAAGATGAGGGG 58.403 37.037 14.65 2.63 32.20 4.79
799 810 4.835284 ACAACCCAATTTGAAACCTTGT 57.165 36.364 0.00 0.00 0.00 3.16
832 843 2.981997 AAAAACCTCGCGACTTCGT 58.018 47.368 3.71 0.00 42.22 3.85
843 854 1.933500 GCGACTTCGTGAGCTTTACCA 60.934 52.381 0.00 0.00 42.22 3.25
1067 1078 0.320771 AAGGTGATGGTGCTGACGAC 60.321 55.000 0.00 0.00 0.00 4.34
1155 1167 3.691342 CGACGCTCCCCCAAGTGA 61.691 66.667 0.00 0.00 0.00 3.41
1172 1184 2.030401 GATAACCCACACGCACGCA 61.030 57.895 0.00 0.00 0.00 5.24
1173 1185 2.235536 GATAACCCACACGCACGCAC 62.236 60.000 0.00 0.00 0.00 5.34
1187 1199 3.773630 GCACGCGCACGCTTCTAA 61.774 61.111 13.70 0.00 45.53 2.10
1226 1238 4.025401 CGCGGCGGCTTGTCTTTT 62.025 61.111 15.84 0.00 36.88 2.27
1284 1296 0.035343 GGGGCTGTCTAGGGTTTGAC 60.035 60.000 0.00 0.00 0.00 3.18
1329 1341 1.069935 GGCTATGGTTCTCGGCTCC 59.930 63.158 0.00 0.00 0.00 4.70
1414 1426 7.758076 TGTGAAATGAGAAATTTGCAGATGATC 59.242 33.333 0.00 0.00 0.00 2.92
1437 1449 2.364002 GCTGTGTACCCAACCAATGTTT 59.636 45.455 0.00 0.00 30.42 2.83
1438 1450 3.552068 GCTGTGTACCCAACCAATGTTTC 60.552 47.826 0.00 0.00 30.42 2.78
1439 1451 2.619177 TGTGTACCCAACCAATGTTTCG 59.381 45.455 0.00 0.00 30.42 3.46
1449 1461 6.190962 CCAACCAATGTTTCGAAAAATGTTG 58.809 36.000 24.26 24.26 30.42 3.33
1469 1481 6.269315 TGTTGTGGATTTGTGTACAATTGAC 58.731 36.000 13.59 6.76 35.72 3.18
1473 1485 5.007034 TGGATTTGTGTACAATTGACGGAT 58.993 37.500 13.59 0.00 35.55 4.18
1483 1495 0.331278 ATTGACGGATTGCCCTTGGA 59.669 50.000 0.00 0.00 0.00 3.53
1500 1512 6.015772 GCCCTTGGAAATTTAGTGTCTTGTTA 60.016 38.462 0.00 0.00 0.00 2.41
1504 1516 8.528044 TTGGAAATTTAGTGTCTTGTTAGGTT 57.472 30.769 0.00 0.00 0.00 3.50
1591 1610 3.136443 TGACCACATGAAGAGGTGACTTT 59.864 43.478 0.00 0.00 41.63 2.66
1613 1632 9.243105 ACTTTTTATACTATCACCAAATGCTGT 57.757 29.630 0.00 0.00 0.00 4.40
1625 1644 3.055963 CCAAATGCTGTGCCAAATAGGAA 60.056 43.478 0.00 0.00 41.22 3.36
1636 1655 9.434420 CTGTGCCAAATAGGAATTAATGAAAAA 57.566 29.630 0.00 0.00 41.22 1.94
1684 1703 9.703892 ATTCAACCGATGATTCAAAAACAAATA 57.296 25.926 0.00 0.00 38.03 1.40
1688 1707 8.856490 ACCGATGATTCAAAAACAAATATAGC 57.144 30.769 0.00 0.00 0.00 2.97
1763 1782 2.618794 AGCATTTTGTTGATTGGGGGA 58.381 42.857 0.00 0.00 0.00 4.81
1801 1820 7.386848 GCCTTTTCATGTTGAACTAGTGTACTA 59.613 37.037 0.00 0.00 35.89 1.82
1847 1868 5.556915 TGGTGCAGTTACTTTGCTACTTAT 58.443 37.500 0.00 0.00 42.02 1.73
1878 1899 2.881827 CCGTGCATTGCATTGGCG 60.882 61.111 15.49 13.00 45.35 5.69
1902 1923 0.680280 GTGCTCGTCCTAGGACCTCA 60.680 60.000 31.78 23.57 41.76 3.86
1949 1970 2.797087 GCAATTGCACCTTGATGGATCG 60.797 50.000 25.36 0.00 41.59 3.69
1954 1975 1.656652 CACCTTGATGGATCGTGGAC 58.343 55.000 0.00 0.00 39.71 4.02
1957 1978 1.210478 CCTTGATGGATCGTGGACCTT 59.790 52.381 0.00 0.00 38.35 3.50
1969 1990 2.092323 GTGGACCTTGGCAATAGGAAC 58.908 52.381 12.14 4.91 36.58 3.62
1988 2009 3.534721 CCACTCGGGTTCTTCTTCC 57.465 57.895 0.00 0.00 0.00 3.46
1991 2012 2.613223 CCACTCGGGTTCTTCTTCCTTC 60.613 54.545 0.00 0.00 0.00 3.46
1994 2015 2.563179 CTCGGGTTCTTCTTCCTTCTGA 59.437 50.000 0.00 0.00 0.00 3.27
1996 2017 3.389983 TCGGGTTCTTCTTCCTTCTGAAA 59.610 43.478 0.00 0.00 31.06 2.69
2002 2026 6.149640 GGTTCTTCTTCCTTCTGAAATGTACC 59.850 42.308 0.00 0.00 31.06 3.34
2008 2032 7.265673 TCTTCCTTCTGAAATGTACCTATTCG 58.734 38.462 0.00 0.00 31.06 3.34
2027 2051 1.066143 CGCCCTTTGTAGTCATGGAGT 60.066 52.381 0.00 0.00 0.00 3.85
2041 2065 1.538047 TGGAGTGCAGATTTTGGCTC 58.462 50.000 0.00 0.00 0.00 4.70
2093 2199 4.136796 TGTTGCATGCTTAGTGTTTCTCT 58.863 39.130 20.33 0.00 0.00 3.10
2113 2219 5.965033 TCTTAGGAAAGAGCCAGATGATT 57.035 39.130 0.00 0.00 36.80 2.57
2114 2220 5.678583 TCTTAGGAAAGAGCCAGATGATTG 58.321 41.667 0.00 0.00 36.80 2.67
2125 2231 2.355756 CCAGATGATTGTAGGCGTTTGG 59.644 50.000 0.00 0.00 0.00 3.28
2141 2247 4.545610 CGTTTGGACATGCACACTATTTT 58.454 39.130 0.00 0.00 0.00 1.82
2157 2263 9.478019 CACACTATTTTTCTGCTAGTTATTTCG 57.522 33.333 0.00 0.00 0.00 3.46
2169 2275 7.898918 TGCTAGTTATTTCGTTATGGCCTATA 58.101 34.615 3.32 0.00 0.00 1.31
2236 2343 3.949754 TGATCCTGATGCTTTGATTCACC 59.050 43.478 0.00 0.00 0.00 4.02
2238 2345 3.349927 TCCTGATGCTTTGATTCACCTG 58.650 45.455 0.00 0.00 0.00 4.00
2241 2348 2.892215 TGATGCTTTGATTCACCTGCAA 59.108 40.909 10.18 0.00 34.07 4.08
2485 2592 0.252881 TCTCTCATTGGGACAGGGCT 60.253 55.000 0.00 0.00 42.39 5.19
2606 2713 2.224992 TGCCCAGTTTAGCAATCAGGAA 60.225 45.455 0.00 0.00 35.69 3.36
2607 2714 2.825532 GCCCAGTTTAGCAATCAGGAAA 59.174 45.455 0.00 0.00 0.00 3.13
2608 2715 3.448660 GCCCAGTTTAGCAATCAGGAAAT 59.551 43.478 0.00 0.00 0.00 2.17
2609 2716 4.081476 GCCCAGTTTAGCAATCAGGAAATT 60.081 41.667 0.00 0.00 0.00 1.82
2610 2717 5.569428 GCCCAGTTTAGCAATCAGGAAATTT 60.569 40.000 0.00 0.00 0.00 1.82
2611 2718 6.101997 CCCAGTTTAGCAATCAGGAAATTTC 58.898 40.000 9.83 9.83 0.00 2.17
2612 2719 6.295236 CCCAGTTTAGCAATCAGGAAATTTCA 60.295 38.462 19.49 0.00 0.00 2.69
2613 2720 6.587608 CCAGTTTAGCAATCAGGAAATTTCAC 59.412 38.462 19.49 9.16 0.00 3.18
2614 2721 7.373493 CAGTTTAGCAATCAGGAAATTTCACT 58.627 34.615 19.49 11.17 0.00 3.41
2615 2722 7.540055 CAGTTTAGCAATCAGGAAATTTCACTC 59.460 37.037 19.49 2.86 0.00 3.51
2616 2723 7.231317 AGTTTAGCAATCAGGAAATTTCACTCA 59.769 33.333 19.49 1.92 0.00 3.41
2617 2724 5.382618 AGCAATCAGGAAATTTCACTCAC 57.617 39.130 19.49 2.14 0.00 3.51
2618 2725 5.075493 AGCAATCAGGAAATTTCACTCACT 58.925 37.500 19.49 4.46 0.00 3.41
2619 2726 5.182760 AGCAATCAGGAAATTTCACTCACTC 59.817 40.000 19.49 0.73 0.00 3.51
2620 2727 5.182760 GCAATCAGGAAATTTCACTCACTCT 59.817 40.000 19.49 3.07 0.00 3.24
2621 2728 6.609533 CAATCAGGAAATTTCACTCACTCTG 58.390 40.000 19.49 14.31 0.00 3.35
2622 2729 4.645535 TCAGGAAATTTCACTCACTCTGG 58.354 43.478 19.49 2.22 0.00 3.86
2623 2730 4.347876 TCAGGAAATTTCACTCACTCTGGA 59.652 41.667 19.49 4.21 0.00 3.86
2624 2731 4.453819 CAGGAAATTTCACTCACTCTGGAC 59.546 45.833 19.49 0.00 0.00 4.02
2625 2732 3.753797 GGAAATTTCACTCACTCTGGACC 59.246 47.826 19.49 0.00 0.00 4.46
2626 2733 4.505742 GGAAATTTCACTCACTCTGGACCT 60.506 45.833 19.49 0.00 0.00 3.85
2627 2734 3.971245 ATTTCACTCACTCTGGACCTC 57.029 47.619 0.00 0.00 0.00 3.85
2628 2735 2.381752 TTCACTCACTCTGGACCTCA 57.618 50.000 0.00 0.00 0.00 3.86
2629 2736 1.621992 TCACTCACTCTGGACCTCAC 58.378 55.000 0.00 0.00 0.00 3.51
2630 2737 0.242286 CACTCACTCTGGACCTCACG 59.758 60.000 0.00 0.00 0.00 4.35
2631 2738 1.214062 CTCACTCTGGACCTCACGC 59.786 63.158 0.00 0.00 0.00 5.34
2632 2739 2.219325 CTCACTCTGGACCTCACGCC 62.219 65.000 0.00 0.00 0.00 5.68
2633 2740 2.118513 ACTCTGGACCTCACGCCT 59.881 61.111 0.00 0.00 0.00 5.52
2634 2741 2.279069 ACTCTGGACCTCACGCCTG 61.279 63.158 0.00 0.00 0.00 4.85
2635 2742 2.203640 TCTGGACCTCACGCCTGT 60.204 61.111 0.00 0.00 0.00 4.00
2637 2744 2.842462 TGGACCTCACGCCTGTGT 60.842 61.111 0.00 0.00 46.49 3.72
2638 2745 2.357517 GGACCTCACGCCTGTGTG 60.358 66.667 4.48 4.48 46.49 3.82
2639 2746 2.421739 GACCTCACGCCTGTGTGT 59.578 61.111 10.35 0.00 46.49 3.72
2645 2752 3.845259 ACGCCTGTGTGTGACCGT 61.845 61.111 0.00 0.00 32.92 4.83
2646 2753 2.587753 CGCCTGTGTGTGACCGTT 60.588 61.111 0.00 0.00 0.00 4.44
2647 2754 2.881266 CGCCTGTGTGTGACCGTTG 61.881 63.158 0.00 0.00 0.00 4.10
2648 2755 2.542907 GCCTGTGTGTGACCGTTGG 61.543 63.158 0.00 0.00 0.00 3.77
2649 2756 1.891919 CCTGTGTGTGACCGTTGGG 60.892 63.158 0.00 0.00 40.11 4.12
2658 2765 2.739132 ACCGTTGGGTCCGTTCTC 59.261 61.111 0.00 0.00 46.01 2.87
2659 2766 2.135581 ACCGTTGGGTCCGTTCTCA 61.136 57.895 0.00 0.00 46.01 3.27
2660 2767 1.295423 CCGTTGGGTCCGTTCTCAT 59.705 57.895 0.00 0.00 0.00 2.90
2661 2768 0.321298 CCGTTGGGTCCGTTCTCATT 60.321 55.000 0.00 0.00 0.00 2.57
2662 2769 0.796312 CGTTGGGTCCGTTCTCATTG 59.204 55.000 0.00 0.00 0.00 2.82
2663 2770 1.165270 GTTGGGTCCGTTCTCATTGG 58.835 55.000 0.00 0.00 0.00 3.16
2664 2771 0.037590 TTGGGTCCGTTCTCATTGGG 59.962 55.000 0.00 0.00 0.00 4.12
2665 2772 0.838554 TGGGTCCGTTCTCATTGGGA 60.839 55.000 0.00 0.00 0.00 4.37
2666 2773 0.392595 GGGTCCGTTCTCATTGGGAC 60.393 60.000 0.49 0.49 46.46 4.46
2667 2774 3.927555 GTCCGTTCTCATTGGGACA 57.072 52.632 4.29 0.00 46.43 4.02
2668 2775 1.726853 GTCCGTTCTCATTGGGACAG 58.273 55.000 4.29 0.00 46.43 3.51
2669 2776 0.613260 TCCGTTCTCATTGGGACAGG 59.387 55.000 1.05 1.05 42.39 4.00
2670 2777 0.392998 CCGTTCTCATTGGGACAGGG 60.393 60.000 0.00 0.00 42.39 4.45
2671 2778 1.026718 CGTTCTCATTGGGACAGGGC 61.027 60.000 0.00 0.00 42.39 5.19
2672 2779 0.329596 GTTCTCATTGGGACAGGGCT 59.670 55.000 0.00 0.00 42.39 5.19
2673 2780 0.329261 TTCTCATTGGGACAGGGCTG 59.671 55.000 0.00 0.00 42.39 4.85
2674 2781 1.751927 CTCATTGGGACAGGGCTGC 60.752 63.158 0.00 0.00 42.39 5.25
2675 2782 2.757099 CATTGGGACAGGGCTGCC 60.757 66.667 11.05 11.05 42.39 4.85
2676 2783 4.066139 ATTGGGACAGGGCTGCCC 62.066 66.667 30.57 30.57 45.90 5.36
2697 2804 4.680237 CAAGTCTGCGCACGGGGA 62.680 66.667 5.66 0.00 0.00 4.81
2698 2805 3.706373 AAGTCTGCGCACGGGGAT 61.706 61.111 5.66 0.00 0.00 3.85
2699 2806 3.665675 AAGTCTGCGCACGGGGATC 62.666 63.158 5.66 0.00 0.00 3.36
2700 2807 4.148825 GTCTGCGCACGGGGATCT 62.149 66.667 5.66 0.00 0.00 2.75
2701 2808 4.147449 TCTGCGCACGGGGATCTG 62.147 66.667 5.66 0.00 0.00 2.90
2702 2809 4.457496 CTGCGCACGGGGATCTGT 62.457 66.667 5.66 0.00 0.00 3.41
2709 2816 1.296715 ACGGGGATCTGTGAACTGC 59.703 57.895 0.00 0.00 0.00 4.40
2710 2817 1.296392 CGGGGATCTGTGAACTGCA 59.704 57.895 0.00 0.00 0.00 4.41
2711 2818 0.321564 CGGGGATCTGTGAACTGCAA 60.322 55.000 0.00 0.00 0.00 4.08
2712 2819 1.168714 GGGGATCTGTGAACTGCAAC 58.831 55.000 0.00 0.00 0.00 4.17
2713 2820 0.798776 GGGATCTGTGAACTGCAACG 59.201 55.000 0.00 0.00 0.00 4.10
2714 2821 0.798776 GGATCTGTGAACTGCAACGG 59.201 55.000 0.00 0.00 0.00 4.44
2715 2822 0.798776 GATCTGTGAACTGCAACGGG 59.201 55.000 0.00 0.00 0.00 5.28
2716 2823 0.396435 ATCTGTGAACTGCAACGGGA 59.604 50.000 0.00 0.00 0.00 5.14
2717 2824 0.396435 TCTGTGAACTGCAACGGGAT 59.604 50.000 0.00 0.00 0.00 3.85
2718 2825 0.798776 CTGTGAACTGCAACGGGATC 59.201 55.000 0.00 0.00 0.00 3.36
2719 2826 0.107643 TGTGAACTGCAACGGGATCA 59.892 50.000 0.00 0.00 0.00 2.92
2720 2827 1.234821 GTGAACTGCAACGGGATCAA 58.765 50.000 0.00 0.00 0.00 2.57
2721 2828 1.197721 GTGAACTGCAACGGGATCAAG 59.802 52.381 0.00 0.00 0.00 3.02
2722 2829 0.169009 GAACTGCAACGGGATCAAGC 59.831 55.000 0.00 0.00 0.00 4.01
2723 2830 0.250901 AACTGCAACGGGATCAAGCT 60.251 50.000 0.00 0.00 0.00 3.74
2724 2831 0.674895 ACTGCAACGGGATCAAGCTC 60.675 55.000 0.00 0.00 0.00 4.09
2725 2832 1.699656 CTGCAACGGGATCAAGCTCG 61.700 60.000 0.00 0.00 37.87 5.03
2726 2833 1.447838 GCAACGGGATCAAGCTCGA 60.448 57.895 0.00 0.00 35.30 4.04
2727 2834 0.811616 GCAACGGGATCAAGCTCGAT 60.812 55.000 0.00 0.00 35.30 3.59
2728 2835 0.933097 CAACGGGATCAAGCTCGATG 59.067 55.000 0.00 0.00 35.30 3.84
2729 2836 0.824109 AACGGGATCAAGCTCGATGA 59.176 50.000 0.00 0.00 35.30 2.92
2730 2837 0.103208 ACGGGATCAAGCTCGATGAC 59.897 55.000 0.00 0.00 35.30 3.06
2731 2838 0.936764 CGGGATCAAGCTCGATGACG 60.937 60.000 0.00 0.00 41.26 4.35
2732 2839 0.103208 GGGATCAAGCTCGATGACGT 59.897 55.000 0.00 0.00 40.69 4.34
2733 2840 1.337071 GGGATCAAGCTCGATGACGTA 59.663 52.381 0.00 0.00 40.69 3.57
2734 2841 2.029828 GGGATCAAGCTCGATGACGTAT 60.030 50.000 0.00 0.00 40.69 3.06
2735 2842 2.983136 GGATCAAGCTCGATGACGTATG 59.017 50.000 0.00 0.00 40.69 2.39
2736 2843 2.492019 TCAAGCTCGATGACGTATGG 57.508 50.000 0.00 0.00 40.69 2.74
2737 2844 1.749063 TCAAGCTCGATGACGTATGGT 59.251 47.619 0.00 0.00 40.69 3.55
2738 2845 2.946990 TCAAGCTCGATGACGTATGGTA 59.053 45.455 0.00 0.00 40.69 3.25
2739 2846 3.568430 TCAAGCTCGATGACGTATGGTAT 59.432 43.478 0.00 0.00 40.69 2.73
2740 2847 3.560902 AGCTCGATGACGTATGGTATG 57.439 47.619 0.00 0.00 40.69 2.39
2741 2848 2.885266 AGCTCGATGACGTATGGTATGT 59.115 45.455 0.00 0.00 40.69 2.29
2742 2849 3.318275 AGCTCGATGACGTATGGTATGTT 59.682 43.478 0.00 0.00 40.69 2.71
2743 2850 3.669122 GCTCGATGACGTATGGTATGTTC 59.331 47.826 0.00 0.00 40.69 3.18
2744 2851 4.227538 CTCGATGACGTATGGTATGTTCC 58.772 47.826 0.00 0.00 40.69 3.62
2745 2852 3.005050 TCGATGACGTATGGTATGTTCCC 59.995 47.826 0.00 0.00 40.69 3.97
2746 2853 2.875087 TGACGTATGGTATGTTCCCG 57.125 50.000 0.00 0.00 0.00 5.14
2747 2854 1.409790 TGACGTATGGTATGTTCCCGG 59.590 52.381 0.00 0.00 0.00 5.73
2748 2855 0.754472 ACGTATGGTATGTTCCCGGG 59.246 55.000 16.85 16.85 0.00 5.73
2749 2856 0.034337 CGTATGGTATGTTCCCGGGG 59.966 60.000 23.50 6.77 0.00 5.73
2750 2857 1.134228 GTATGGTATGTTCCCGGGGT 58.866 55.000 23.50 7.26 0.00 4.95
2751 2858 1.071228 GTATGGTATGTTCCCGGGGTC 59.929 57.143 23.50 14.72 0.00 4.46
2752 2859 0.622154 ATGGTATGTTCCCGGGGTCA 60.622 55.000 23.50 20.16 0.00 4.02
2753 2860 1.222661 GGTATGTTCCCGGGGTCAC 59.777 63.158 23.50 15.80 0.00 3.67
2754 2861 1.153509 GTATGTTCCCGGGGTCACG 60.154 63.158 23.50 0.00 0.00 4.35
2762 2869 2.345991 CGGGGTCACGGTGAACAT 59.654 61.111 26.04 0.00 35.30 2.71
2763 2870 2.032634 CGGGGTCACGGTGAACATG 61.033 63.158 26.04 14.40 35.30 3.21
2764 2871 1.674322 GGGGTCACGGTGAACATGG 60.674 63.158 26.04 0.00 35.30 3.66
2765 2872 1.072505 GGGTCACGGTGAACATGGT 59.927 57.895 26.04 0.00 35.30 3.55
2766 2873 1.234615 GGGTCACGGTGAACATGGTG 61.235 60.000 26.04 0.00 35.30 4.17
2767 2874 1.234615 GGTCACGGTGAACATGGTGG 61.235 60.000 20.81 0.00 33.38 4.61
2768 2875 1.599518 TCACGGTGAACATGGTGGC 60.600 57.895 8.68 0.00 0.00 5.01
2769 2876 2.668212 ACGGTGAACATGGTGGCG 60.668 61.111 0.00 0.00 0.00 5.69
2770 2877 3.430862 CGGTGAACATGGTGGCGG 61.431 66.667 0.00 0.00 0.00 6.13
2771 2878 3.061848 GGTGAACATGGTGGCGGG 61.062 66.667 0.00 0.00 0.00 6.13
2772 2879 2.282180 GTGAACATGGTGGCGGGT 60.282 61.111 0.00 0.00 0.00 5.28
2773 2880 2.282110 TGAACATGGTGGCGGGTG 60.282 61.111 0.00 0.00 0.00 4.61
2774 2881 3.747976 GAACATGGTGGCGGGTGC 61.748 66.667 0.00 0.00 41.71 5.01
2788 2895 0.817654 GGGTGCCCAGTTTAGCAATC 59.182 55.000 1.66 0.00 41.48 2.67
2790 2897 1.474077 GGTGCCCAGTTTAGCAATCAG 59.526 52.381 0.00 0.00 41.48 2.90
2812 2919 5.709164 CAGGAAATTTCACTCACTCTGGATT 59.291 40.000 19.49 0.00 0.00 3.01
3107 3295 5.483685 TGATACTACCTGTCAAGTGCTTT 57.516 39.130 0.00 0.00 0.00 3.51
3235 3430 7.568349 ACCAATTCATGTGTGACATACTAGAT 58.432 34.615 0.00 0.00 36.53 1.98
3424 3619 3.058224 GTGTTCTTTGTATGCTTTCCGCT 60.058 43.478 0.00 0.00 40.11 5.52
3509 3704 5.982890 ACATGAACCTAAAATCAGTTGGG 57.017 39.130 0.00 0.00 35.35 4.12
4216 4456 3.692406 GGGAAGACGGTCGGCTGT 61.692 66.667 0.00 0.00 36.82 4.40
4328 4569 3.219281 GAACCCAAAGCAGTGAGGTAAA 58.781 45.455 0.00 0.00 0.00 2.01
4334 4578 3.697619 AAGCAGTGAGGTAAACCCTAC 57.302 47.619 0.00 0.00 46.51 3.18
4372 4617 3.440522 AGAGGAAATTTAGTTGCGAAGGC 59.559 43.478 0.00 0.00 40.52 4.35
4547 4811 9.739276 CCATGGATGTGGTTAATATGTAAGTAT 57.261 33.333 5.56 0.00 34.46 2.12
4586 4850 6.329496 TGTGGTTAGTTTCTTTTTGAGCTTG 58.671 36.000 0.00 0.00 0.00 4.01
4636 4900 0.886490 GGTGTGGCTGGTGAGTTCAG 60.886 60.000 0.00 0.00 35.49 3.02
4662 4927 4.810491 GTGGGCCATACAAATAAGCAAATG 59.190 41.667 10.70 0.00 0.00 2.32
4674 5088 6.543430 AATAAGCAAATGCATTTCTACCCA 57.457 33.333 21.70 6.01 45.16 4.51
4679 5093 4.621274 GCAAATGCATTTCTACCCACATGT 60.621 41.667 21.70 0.00 41.59 3.21
4688 5102 6.367374 TTTCTACCCACATGTGAAGACATA 57.633 37.500 27.46 8.98 41.12 2.29
4732 5146 1.697432 AGACGTGAGACCCATTCCAAA 59.303 47.619 0.00 0.00 0.00 3.28
4747 5161 8.093927 ACCCATTCCAAATAAACAAATACACTG 58.906 33.333 0.00 0.00 0.00 3.66
4749 5163 7.064490 CCATTCCAAATAAACAAATACACTGCC 59.936 37.037 0.00 0.00 0.00 4.85
4775 5190 8.432805 CCCCTAATGTGAGAATAATACTCTTGT 58.567 37.037 0.00 0.00 35.66 3.16
4820 5235 4.846779 TTACATGGCTCCAACTCAAAAC 57.153 40.909 0.00 0.00 0.00 2.43
4825 5240 0.317854 GCTCCAACTCAAAACCACGC 60.318 55.000 0.00 0.00 0.00 5.34
4848 5263 4.007659 TCTTGATTTTAGTTTCTCGGGCC 58.992 43.478 0.00 0.00 0.00 5.80
4851 5266 4.340617 TGATTTTAGTTTCTCGGGCCAAT 58.659 39.130 4.39 0.00 0.00 3.16
4854 5269 3.426787 TTAGTTTCTCGGGCCAATCAA 57.573 42.857 4.39 0.00 0.00 2.57
4911 5879 5.159399 ACAAATTGCAATTTCAACACAGC 57.841 34.783 29.92 0.00 36.52 4.40
4912 5880 4.205334 CAAATTGCAATTTCAACACAGCG 58.795 39.130 29.92 14.59 36.52 5.18
4913 5881 2.859526 TTGCAATTTCAACACAGCGA 57.140 40.000 0.00 0.00 0.00 4.93
4914 5882 3.367992 TTGCAATTTCAACACAGCGAT 57.632 38.095 0.00 0.00 0.00 4.58
4915 5883 4.495911 TTGCAATTTCAACACAGCGATA 57.504 36.364 0.00 0.00 0.00 2.92
4916 5884 4.082274 TGCAATTTCAACACAGCGATAG 57.918 40.909 0.00 0.00 0.00 2.08
4917 5885 3.750652 TGCAATTTCAACACAGCGATAGA 59.249 39.130 0.00 0.00 39.76 1.98
4918 5886 4.395854 TGCAATTTCAACACAGCGATAGAT 59.604 37.500 0.00 0.00 39.76 1.98
4929 5897 2.672098 AGCGATAGATGTTGTCCTCCT 58.328 47.619 0.00 0.00 39.76 3.69
4930 5898 3.833732 AGCGATAGATGTTGTCCTCCTA 58.166 45.455 0.00 0.00 39.76 2.94
4931 5899 3.570550 AGCGATAGATGTTGTCCTCCTAC 59.429 47.826 0.00 0.00 39.76 3.18
4932 5900 3.305471 GCGATAGATGTTGTCCTCCTACC 60.305 52.174 0.00 0.00 39.76 3.18
4933 5901 4.145807 CGATAGATGTTGTCCTCCTACCT 58.854 47.826 0.00 0.00 39.76 3.08
4934 5902 5.314529 CGATAGATGTTGTCCTCCTACCTA 58.685 45.833 0.00 0.00 39.76 3.08
4935 5903 5.768662 CGATAGATGTTGTCCTCCTACCTAA 59.231 44.000 0.00 0.00 39.76 2.69
4936 5904 6.294065 CGATAGATGTTGTCCTCCTACCTAAC 60.294 46.154 0.00 0.00 39.76 2.34
4937 5905 4.949121 AGATGTTGTCCTCCTACCTAACT 58.051 43.478 0.00 0.00 0.00 2.24
4938 5906 4.957327 AGATGTTGTCCTCCTACCTAACTC 59.043 45.833 0.00 0.00 0.00 3.01
4939 5907 4.122337 TGTTGTCCTCCTACCTAACTCA 57.878 45.455 0.00 0.00 0.00 3.41
4940 5908 4.684724 TGTTGTCCTCCTACCTAACTCAT 58.315 43.478 0.00 0.00 0.00 2.90
4941 5909 4.466370 TGTTGTCCTCCTACCTAACTCATG 59.534 45.833 0.00 0.00 0.00 3.07
4942 5910 4.603094 TGTCCTCCTACCTAACTCATGA 57.397 45.455 0.00 0.00 0.00 3.07
4943 5911 5.144159 TGTCCTCCTACCTAACTCATGAT 57.856 43.478 0.00 0.00 0.00 2.45
4944 5912 5.141182 TGTCCTCCTACCTAACTCATGATC 58.859 45.833 0.00 0.00 0.00 2.92
4945 5913 5.103473 TGTCCTCCTACCTAACTCATGATCT 60.103 44.000 0.00 0.00 0.00 2.75
4946 5914 5.836358 GTCCTCCTACCTAACTCATGATCTT 59.164 44.000 0.00 0.00 0.00 2.40
4947 5915 5.835819 TCCTCCTACCTAACTCATGATCTTG 59.164 44.000 0.00 2.18 0.00 3.02
4948 5916 5.600484 CCTCCTACCTAACTCATGATCTTGT 59.400 44.000 8.33 0.00 0.00 3.16
4949 5917 6.462207 CCTCCTACCTAACTCATGATCTTGTG 60.462 46.154 8.33 8.49 0.00 3.33
4950 5918 5.053145 CCTACCTAACTCATGATCTTGTGC 58.947 45.833 8.33 0.00 0.00 4.57
4951 5919 3.525537 ACCTAACTCATGATCTTGTGCG 58.474 45.455 8.33 2.25 0.00 5.34
4952 5920 2.286294 CCTAACTCATGATCTTGTGCGC 59.714 50.000 0.00 0.00 0.00 6.09
4953 5921 2.105006 AACTCATGATCTTGTGCGCT 57.895 45.000 9.73 0.00 0.00 5.92
4954 5922 1.649664 ACTCATGATCTTGTGCGCTC 58.350 50.000 9.73 5.51 0.00 5.03
4955 5923 1.066645 ACTCATGATCTTGTGCGCTCA 60.067 47.619 9.73 8.97 0.00 4.26
4956 5924 2.004733 CTCATGATCTTGTGCGCTCAA 58.995 47.619 22.20 22.20 0.00 3.02
4957 5925 1.733912 TCATGATCTTGTGCGCTCAAC 59.266 47.619 20.10 11.77 0.00 3.18
4958 5926 1.736126 CATGATCTTGTGCGCTCAACT 59.264 47.619 20.10 10.92 0.00 3.16
4959 5927 1.882912 TGATCTTGTGCGCTCAACTT 58.117 45.000 20.10 10.74 0.00 2.66
4960 5928 3.038788 TGATCTTGTGCGCTCAACTTA 57.961 42.857 20.10 9.67 0.00 2.24
4961 5929 2.736721 TGATCTTGTGCGCTCAACTTAC 59.263 45.455 20.10 12.18 0.00 2.34
4962 5930 2.526304 TCTTGTGCGCTCAACTTACT 57.474 45.000 20.10 0.00 0.00 2.24
4963 5931 3.653539 TCTTGTGCGCTCAACTTACTA 57.346 42.857 20.10 0.00 0.00 1.82
4964 5932 3.985008 TCTTGTGCGCTCAACTTACTAA 58.015 40.909 20.10 0.00 0.00 2.24
4965 5933 4.566004 TCTTGTGCGCTCAACTTACTAAT 58.434 39.130 20.10 0.00 0.00 1.73
4966 5934 4.388773 TCTTGTGCGCTCAACTTACTAATG 59.611 41.667 20.10 8.14 0.00 1.90
4967 5935 3.659786 TGTGCGCTCAACTTACTAATGT 58.340 40.909 10.16 0.00 0.00 2.71
4968 5936 3.678072 TGTGCGCTCAACTTACTAATGTC 59.322 43.478 10.16 0.00 0.00 3.06
4969 5937 3.678072 GTGCGCTCAACTTACTAATGTCA 59.322 43.478 9.73 0.00 0.00 3.58
4970 5938 3.926527 TGCGCTCAACTTACTAATGTCAG 59.073 43.478 9.73 0.00 0.00 3.51
4971 5939 4.174009 GCGCTCAACTTACTAATGTCAGA 58.826 43.478 0.00 0.00 0.00 3.27
4972 5940 4.806247 GCGCTCAACTTACTAATGTCAGAT 59.194 41.667 0.00 0.00 0.00 2.90
4973 5941 5.292101 GCGCTCAACTTACTAATGTCAGATT 59.708 40.000 0.00 0.00 0.00 2.40
4974 5942 6.508721 GCGCTCAACTTACTAATGTCAGATTC 60.509 42.308 0.00 0.00 0.00 2.52
4975 5943 6.754209 CGCTCAACTTACTAATGTCAGATTCT 59.246 38.462 0.00 0.00 0.00 2.40
4976 5944 7.043722 CGCTCAACTTACTAATGTCAGATTCTC 60.044 40.741 0.00 0.00 0.00 2.87
4977 5945 7.223777 GCTCAACTTACTAATGTCAGATTCTCC 59.776 40.741 0.00 0.00 0.00 3.71
4978 5946 8.367660 TCAACTTACTAATGTCAGATTCTCCT 57.632 34.615 0.00 0.00 0.00 3.69
4979 5947 9.475620 TCAACTTACTAATGTCAGATTCTCCTA 57.524 33.333 0.00 0.00 0.00 2.94
4982 5950 9.427821 ACTTACTAATGTCAGATTCTCCTATGT 57.572 33.333 0.00 0.00 0.00 2.29
4986 5954 8.762645 ACTAATGTCAGATTCTCCTATGTTTCA 58.237 33.333 0.00 0.00 0.00 2.69
4987 5955 9.605275 CTAATGTCAGATTCTCCTATGTTTCAA 57.395 33.333 0.00 0.00 0.00 2.69
4988 5956 8.503458 AATGTCAGATTCTCCTATGTTTCAAG 57.497 34.615 0.00 0.00 0.00 3.02
4989 5957 7.244886 TGTCAGATTCTCCTATGTTTCAAGA 57.755 36.000 0.00 0.00 0.00 3.02
4990 5958 7.099764 TGTCAGATTCTCCTATGTTTCAAGAC 58.900 38.462 0.00 0.00 0.00 3.01
4991 5959 7.099764 GTCAGATTCTCCTATGTTTCAAGACA 58.900 38.462 0.00 0.00 0.00 3.41
4992 5960 7.604164 GTCAGATTCTCCTATGTTTCAAGACAA 59.396 37.037 0.00 0.00 32.47 3.18
4993 5961 8.156820 TCAGATTCTCCTATGTTTCAAGACAAA 58.843 33.333 0.00 0.00 32.47 2.83
4994 5962 8.233190 CAGATTCTCCTATGTTTCAAGACAAAC 58.767 37.037 0.00 0.00 36.87 2.93
4996 5964 7.873719 TTCTCCTATGTTTCAAGACAAACAA 57.126 32.000 3.06 0.00 46.66 2.83
4997 5965 7.873719 TCTCCTATGTTTCAAGACAAACAAA 57.126 32.000 3.06 0.00 46.66 2.83
4998 5966 8.463930 TCTCCTATGTTTCAAGACAAACAAAT 57.536 30.769 3.06 0.00 46.66 2.32
4999 5967 8.912988 TCTCCTATGTTTCAAGACAAACAAATT 58.087 29.630 3.06 0.00 46.66 1.82
5000 5968 8.870160 TCCTATGTTTCAAGACAAACAAATTG 57.130 30.769 3.06 0.00 46.66 2.32
5001 5969 7.437862 TCCTATGTTTCAAGACAAACAAATTGC 59.562 33.333 3.06 0.00 46.66 3.56
5002 5970 6.981762 ATGTTTCAAGACAAACAAATTGCA 57.018 29.167 3.06 0.00 46.66 4.08
5003 5971 6.791887 TGTTTCAAGACAAACAAATTGCAA 57.208 29.167 0.00 0.00 42.11 4.08
5004 5972 7.375106 TGTTTCAAGACAAACAAATTGCAAT 57.625 28.000 5.99 5.99 42.11 3.56
5005 5973 7.814642 TGTTTCAAGACAAACAAATTGCAATT 58.185 26.923 18.99 18.99 42.11 2.32
5006 5974 8.295288 TGTTTCAAGACAAACAAATTGCAATTT 58.705 25.926 27.73 27.73 42.11 1.82
5007 5975 8.787884 GTTTCAAGACAAACAAATTGCAATTTC 58.212 29.630 29.92 19.54 43.13 2.17
5008 5976 7.606858 TCAAGACAAACAAATTGCAATTTCA 57.393 28.000 29.92 4.48 43.13 2.69
5009 5977 8.037382 TCAAGACAAACAAATTGCAATTTCAA 57.963 26.923 29.92 8.95 43.13 2.69
5010 5978 7.961827 TCAAGACAAACAAATTGCAATTTCAAC 59.038 29.630 29.92 18.44 43.13 3.18
5011 5979 7.375106 AGACAAACAAATTGCAATTTCAACA 57.625 28.000 29.92 0.00 43.13 3.33
5012 5980 7.242783 AGACAAACAAATTGCAATTTCAACAC 58.757 30.769 29.92 19.70 43.13 3.32
5013 5981 6.906659 ACAAACAAATTGCAATTTCAACACA 58.093 28.000 29.92 0.00 43.13 3.72
5014 5982 7.022384 ACAAACAAATTGCAATTTCAACACAG 58.978 30.769 29.92 20.24 43.13 3.66
5042 6010 2.543635 TGTTGTCCTCCTACCTAACCC 58.456 52.381 0.00 0.00 0.00 4.11
5061 6029 3.194116 ACCCATGATCTTGTGCATTCAAC 59.806 43.478 7.73 0.00 0.00 3.18
5071 6039 5.764686 TCTTGTGCATTCAACTTACTCATGT 59.235 36.000 0.00 0.00 0.00 3.21
5079 6047 7.678218 GCATTCAACTTACTCATGTCCATTCTC 60.678 40.741 0.00 0.00 0.00 2.87
5080 6048 5.734720 TCAACTTACTCATGTCCATTCTCC 58.265 41.667 0.00 0.00 0.00 3.71
5081 6049 5.485353 TCAACTTACTCATGTCCATTCTCCT 59.515 40.000 0.00 0.00 0.00 3.69
5082 6050 6.667848 TCAACTTACTCATGTCCATTCTCCTA 59.332 38.462 0.00 0.00 0.00 2.94
5083 6051 7.345653 TCAACTTACTCATGTCCATTCTCCTAT 59.654 37.037 0.00 0.00 0.00 2.57
5084 6052 7.060383 ACTTACTCATGTCCATTCTCCTATG 57.940 40.000 0.00 0.00 0.00 2.23
5085 6053 6.613271 ACTTACTCATGTCCATTCTCCTATGT 59.387 38.462 0.00 0.00 0.00 2.29
5086 6054 5.965033 ACTCATGTCCATTCTCCTATGTT 57.035 39.130 0.00 0.00 0.00 2.71
5087 6055 6.319048 ACTCATGTCCATTCTCCTATGTTT 57.681 37.500 0.00 0.00 0.00 2.83
5088 6056 6.352516 ACTCATGTCCATTCTCCTATGTTTC 58.647 40.000 0.00 0.00 0.00 2.78
5089 6057 6.070021 ACTCATGTCCATTCTCCTATGTTTCA 60.070 38.462 0.00 0.00 0.00 2.69
5090 6058 6.720309 TCATGTCCATTCTCCTATGTTTCAA 58.280 36.000 0.00 0.00 0.00 2.69
5091 6059 6.825213 TCATGTCCATTCTCCTATGTTTCAAG 59.175 38.462 0.00 0.00 0.00 3.02
5092 6060 5.500234 TGTCCATTCTCCTATGTTTCAAGG 58.500 41.667 0.00 0.00 0.00 3.61
5093 6061 4.336713 GTCCATTCTCCTATGTTTCAAGGC 59.663 45.833 0.00 0.00 32.55 4.35
5094 6062 4.018506 TCCATTCTCCTATGTTTCAAGGCA 60.019 41.667 0.00 0.00 32.55 4.75
5095 6063 4.706476 CCATTCTCCTATGTTTCAAGGCAA 59.294 41.667 0.00 0.00 32.55 4.52
5096 6064 5.185635 CCATTCTCCTATGTTTCAAGGCAAA 59.814 40.000 0.00 0.00 32.55 3.68
5097 6065 5.705609 TTCTCCTATGTTTCAAGGCAAAC 57.294 39.130 0.00 0.00 36.87 2.93
5099 6067 5.136828 TCTCCTATGTTTCAAGGCAAACAA 58.863 37.500 5.82 0.00 46.66 2.83
5100 6068 5.596361 TCTCCTATGTTTCAAGGCAAACAAA 59.404 36.000 5.82 0.00 46.66 2.83
5101 6069 6.267471 TCTCCTATGTTTCAAGGCAAACAAAT 59.733 34.615 5.82 0.00 46.66 2.32
5102 6070 6.825610 TCCTATGTTTCAAGGCAAACAAATT 58.174 32.000 5.82 0.00 46.66 1.82
5103 6071 6.705381 TCCTATGTTTCAAGGCAAACAAATTG 59.295 34.615 5.82 0.00 46.66 2.32
5117 6085 7.425915 CAAACAAATTGCAATTTCAACACAG 57.574 32.000 29.92 20.24 36.52 3.66
5118 6086 5.159399 ACAAATTGCAATTTCAACACAGC 57.841 34.783 29.92 0.00 36.52 4.40
5119 6087 4.205334 CAAATTGCAATTTCAACACAGCG 58.795 39.130 29.92 14.59 36.52 5.18
5120 6088 2.859526 TTGCAATTTCAACACAGCGA 57.140 40.000 0.00 0.00 0.00 4.93
5121 6089 3.367992 TTGCAATTTCAACACAGCGAT 57.632 38.095 0.00 0.00 0.00 4.58
5122 6090 4.495911 TTGCAATTTCAACACAGCGATA 57.504 36.364 0.00 0.00 0.00 2.92
5123 6091 4.082274 TGCAATTTCAACACAGCGATAG 57.918 40.909 0.00 0.00 0.00 2.08
5124 6092 3.750652 TGCAATTTCAACACAGCGATAGA 59.249 39.130 0.00 0.00 39.76 1.98
5125 6093 4.395854 TGCAATTTCAACACAGCGATAGAT 59.604 37.500 0.00 0.00 39.76 1.98
5136 6104 2.672098 AGCGATAGATGTTGTCCTCCT 58.328 47.619 0.00 0.00 39.76 3.69
5137 6105 3.833732 AGCGATAGATGTTGTCCTCCTA 58.166 45.455 0.00 0.00 39.76 2.94
5138 6106 3.570550 AGCGATAGATGTTGTCCTCCTAC 59.429 47.826 0.00 0.00 39.76 3.18
5139 6107 3.305471 GCGATAGATGTTGTCCTCCTACC 60.305 52.174 0.00 0.00 39.76 3.18
5140 6108 4.145807 CGATAGATGTTGTCCTCCTACCT 58.854 47.826 0.00 0.00 39.76 3.08
5141 6109 5.314529 CGATAGATGTTGTCCTCCTACCTA 58.685 45.833 0.00 0.00 39.76 3.08
5142 6110 5.768662 CGATAGATGTTGTCCTCCTACCTAA 59.231 44.000 0.00 0.00 39.76 2.69
5143 6111 6.294065 CGATAGATGTTGTCCTCCTACCTAAC 60.294 46.154 0.00 0.00 39.76 2.34
5144 6112 4.031611 AGATGTTGTCCTCCTACCTAACC 58.968 47.826 0.00 0.00 0.00 2.85
5145 6113 2.543635 TGTTGTCCTCCTACCTAACCC 58.456 52.381 0.00 0.00 0.00 4.11
5146 6114 2.158127 TGTTGTCCTCCTACCTAACCCA 60.158 50.000 0.00 0.00 0.00 4.51
5147 6115 3.113043 GTTGTCCTCCTACCTAACCCAT 58.887 50.000 0.00 0.00 0.00 4.00
5148 6116 2.759355 TGTCCTCCTACCTAACCCATG 58.241 52.381 0.00 0.00 0.00 3.66
5149 6117 2.316677 TGTCCTCCTACCTAACCCATGA 59.683 50.000 0.00 0.00 0.00 3.07
5150 6118 3.051341 TGTCCTCCTACCTAACCCATGAT 60.051 47.826 0.00 0.00 0.00 2.45
5151 6119 4.171243 TGTCCTCCTACCTAACCCATGATA 59.829 45.833 0.00 0.00 0.00 2.15
5152 6120 5.162760 TGTCCTCCTACCTAACCCATGATAT 60.163 44.000 0.00 0.00 0.00 1.63
5153 6121 5.785940 GTCCTCCTACCTAACCCATGATATT 59.214 44.000 0.00 0.00 0.00 1.28
5154 6122 5.785423 TCCTCCTACCTAACCCATGATATTG 59.215 44.000 0.00 0.00 0.00 1.90
5155 6123 5.548056 CCTCCTACCTAACCCATGATATTGT 59.452 44.000 0.00 0.00 0.00 2.71
5156 6124 6.433847 TCCTACCTAACCCATGATATTGTG 57.566 41.667 0.00 0.00 0.00 3.33
5157 6125 5.003804 CCTACCTAACCCATGATATTGTGC 58.996 45.833 0.00 0.00 0.00 4.57
5158 6126 4.518278 ACCTAACCCATGATATTGTGCA 57.482 40.909 0.00 0.00 0.00 4.57
5159 6127 5.065613 ACCTAACCCATGATATTGTGCAT 57.934 39.130 0.00 0.00 0.00 3.96
5160 6128 5.457686 ACCTAACCCATGATATTGTGCATT 58.542 37.500 0.00 0.00 0.00 3.56
5161 6129 5.536161 ACCTAACCCATGATATTGTGCATTC 59.464 40.000 0.00 0.00 0.00 2.67
5162 6130 5.535783 CCTAACCCATGATATTGTGCATTCA 59.464 40.000 0.00 0.00 0.00 2.57
5163 6131 5.936187 AACCCATGATATTGTGCATTCAA 57.064 34.783 0.00 0.00 0.00 2.69
5164 6132 5.266733 ACCCATGATATTGTGCATTCAAC 57.733 39.130 0.00 0.00 0.00 3.18
5165 6133 4.957954 ACCCATGATATTGTGCATTCAACT 59.042 37.500 0.00 0.00 0.00 3.16
5166 6134 5.422970 ACCCATGATATTGTGCATTCAACTT 59.577 36.000 0.00 0.00 0.00 2.66
5167 6135 6.606796 ACCCATGATATTGTGCATTCAACTTA 59.393 34.615 0.00 0.00 0.00 2.24
5168 6136 6.919662 CCCATGATATTGTGCATTCAACTTAC 59.080 38.462 0.00 0.00 0.00 2.34
5169 6137 7.201848 CCCATGATATTGTGCATTCAACTTACT 60.202 37.037 0.00 0.00 0.00 2.24
5170 6138 7.859377 CCATGATATTGTGCATTCAACTTACTC 59.141 37.037 0.00 0.00 0.00 2.59
5171 6139 7.920160 TGATATTGTGCATTCAACTTACTCA 57.080 32.000 0.00 0.00 0.00 3.41
5172 6140 8.510243 TGATATTGTGCATTCAACTTACTCAT 57.490 30.769 0.00 0.00 0.00 2.90
5173 6141 8.400186 TGATATTGTGCATTCAACTTACTCATG 58.600 33.333 0.00 0.00 0.00 3.07
5174 6142 6.579666 ATTGTGCATTCAACTTACTCATGT 57.420 33.333 0.00 0.00 0.00 3.21
5175 6143 5.611796 TGTGCATTCAACTTACTCATGTC 57.388 39.130 0.00 0.00 0.00 3.06
5176 6144 4.455533 TGTGCATTCAACTTACTCATGTCC 59.544 41.667 0.00 0.00 0.00 4.02
5177 6145 4.455533 GTGCATTCAACTTACTCATGTCCA 59.544 41.667 0.00 0.00 0.00 4.02
5178 6146 5.124457 GTGCATTCAACTTACTCATGTCCAT 59.876 40.000 0.00 0.00 0.00 3.41
5179 6147 5.711506 TGCATTCAACTTACTCATGTCCATT 59.288 36.000 0.00 0.00 0.00 3.16
5180 6148 6.127925 TGCATTCAACTTACTCATGTCCATTC 60.128 38.462 0.00 0.00 0.00 2.67
5181 6149 6.094603 GCATTCAACTTACTCATGTCCATTCT 59.905 38.462 0.00 0.00 0.00 2.40
5182 6150 7.678218 GCATTCAACTTACTCATGTCCATTCTC 60.678 40.741 0.00 0.00 0.00 2.87
5197 6165 8.055279 TGTCCATTCTCCTATGTTTCAAAATC 57.945 34.615 0.00 0.00 0.00 2.17
5198 6166 7.122650 TGTCCATTCTCCTATGTTTCAAAATCC 59.877 37.037 0.00 0.00 0.00 3.01
5253 6222 1.532007 CCTACTATGGTCGCTCGAGAC 59.468 57.143 18.75 6.42 40.25 3.36
5260 6229 0.736053 GGTCGCTCGAGACTCTTCAT 59.264 55.000 18.75 0.00 40.76 2.57
5266 6235 4.052608 CGCTCGAGACTCTTCATAGACTA 58.947 47.826 18.75 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 13 0.664466 CGCGAGTGTGAGAGAAAGCA 60.664 55.000 0.00 0.00 0.00 3.91
50 53 2.719739 ACCTCTGAATACGTCGAAGGA 58.280 47.619 0.00 0.00 0.00 3.36
54 57 2.946990 TGCATACCTCTGAATACGTCGA 59.053 45.455 0.00 0.00 0.00 4.20
443 451 7.903995 AAACCGTAACTCCGATTTAAACATA 57.096 32.000 0.00 0.00 0.00 2.29
599 609 4.549458 CTGCGTTTTCATGAAATCAACCT 58.451 39.130 21.10 0.00 0.00 3.50
644 655 2.281276 GGTTTCTGCCCGTCCGTT 60.281 61.111 0.00 0.00 0.00 4.44
727 738 8.546322 TGATCCCCTCATCTTTAATCATGATAG 58.454 37.037 9.04 2.98 0.00 2.08
729 740 7.173722 GTGATCCCCTCATCTTTAATCATGAT 58.826 38.462 1.18 1.18 35.97 2.45
730 741 6.101588 TGTGATCCCCTCATCTTTAATCATGA 59.898 38.462 0.00 0.00 35.97 3.07
773 784 4.940654 AGGTTTCAAATTGGGTTGTTGTTG 59.059 37.500 0.00 0.00 0.00 3.33
777 788 5.172687 ACAAGGTTTCAAATTGGGTTGTT 57.827 34.783 0.00 0.00 0.00 2.83
778 789 4.835284 ACAAGGTTTCAAATTGGGTTGT 57.165 36.364 0.00 0.00 0.00 3.32
779 790 5.236263 GCTAACAAGGTTTCAAATTGGGTTG 59.764 40.000 0.00 0.00 0.00 3.77
780 791 5.130311 AGCTAACAAGGTTTCAAATTGGGTT 59.870 36.000 0.00 0.00 0.00 4.11
817 828 1.081376 CTCACGAAGTCGCGAGGTT 60.081 57.895 10.24 6.12 41.61 3.50
818 829 2.561885 CTCACGAAGTCGCGAGGT 59.438 61.111 10.24 0.00 41.61 3.85
819 830 2.804368 AAGCTCACGAAGTCGCGAGG 62.804 60.000 10.24 1.34 45.51 4.63
821 832 0.239082 TAAAGCTCACGAAGTCGCGA 59.761 50.000 3.71 3.71 41.61 5.87
822 833 0.362512 GTAAAGCTCACGAAGTCGCG 59.637 55.000 0.00 0.00 41.61 5.87
823 834 0.714439 GGTAAAGCTCACGAAGTCGC 59.286 55.000 0.00 0.00 41.61 5.19
824 835 2.060326 TGGTAAAGCTCACGAAGTCG 57.940 50.000 0.00 0.00 41.61 4.18
825 836 2.599082 CGATGGTAAAGCTCACGAAGTC 59.401 50.000 0.00 0.00 41.61 3.01
827 838 2.876091 TCGATGGTAAAGCTCACGAAG 58.124 47.619 0.00 0.00 0.00 3.79
828 839 3.186909 CATCGATGGTAAAGCTCACGAA 58.813 45.455 17.96 0.00 32.48 3.85
843 854 1.004560 CATGCCCGTAGCCATCGAT 60.005 57.895 0.00 0.00 42.71 3.59
890 901 2.362717 CCTTGGAAACCGTGCCTTTAAA 59.637 45.455 0.00 0.00 0.00 1.52
944 955 3.072476 CAGGTGGAGTGGTGGAGG 58.928 66.667 0.00 0.00 0.00 4.30
1067 1078 4.271816 CGGGATCCACCTCGAGCG 62.272 72.222 15.23 2.92 38.98 5.03
1155 1167 2.031314 TGCGTGCGTGTGGGTTAT 59.969 55.556 0.00 0.00 0.00 1.89
1174 1186 0.853419 GACCTATTAGAAGCGTGCGC 59.147 55.000 8.67 8.67 42.33 6.09
1175 1187 1.121240 CGACCTATTAGAAGCGTGCG 58.879 55.000 0.00 0.00 0.00 5.34
1176 1188 2.117910 GTCGACCTATTAGAAGCGTGC 58.882 52.381 3.51 0.00 0.00 5.34
1177 1189 2.373269 CGTCGACCTATTAGAAGCGTG 58.627 52.381 10.58 0.00 0.00 5.34
1178 1190 1.332997 CCGTCGACCTATTAGAAGCGT 59.667 52.381 10.58 0.00 0.00 5.07
1179 1191 1.334779 CCCGTCGACCTATTAGAAGCG 60.335 57.143 10.58 0.00 0.00 4.68
1180 1192 1.000496 CCCCGTCGACCTATTAGAAGC 60.000 57.143 10.58 0.00 0.00 3.86
1181 1193 2.579873 TCCCCGTCGACCTATTAGAAG 58.420 52.381 10.58 0.00 0.00 2.85
1187 1199 2.207924 GCCATCCCCGTCGACCTAT 61.208 63.158 10.58 0.00 0.00 2.57
1226 1238 0.665835 ATCAAAACGCGAGCAAACCA 59.334 45.000 15.93 0.00 0.00 3.67
1284 1296 4.092091 GCATATTTCCTCTCGAATAAGCCG 59.908 45.833 0.00 0.00 30.39 5.52
1322 1334 2.852075 AACCCCAACAGGAGCCGA 60.852 61.111 0.00 0.00 38.24 5.54
1329 1341 0.405585 ACTCCATCCAACCCCAACAG 59.594 55.000 0.00 0.00 0.00 3.16
1414 1426 1.541147 CATTGGTTGGGTACACAGCAG 59.459 52.381 14.32 0.00 0.00 4.24
1437 1449 5.655488 ACACAAATCCACAACATTTTTCGA 58.345 33.333 0.00 0.00 0.00 3.71
1438 1450 5.964887 ACACAAATCCACAACATTTTTCG 57.035 34.783 0.00 0.00 0.00 3.46
1439 1451 7.763172 TGTACACAAATCCACAACATTTTTC 57.237 32.000 0.00 0.00 0.00 2.29
1449 1461 4.214545 TCCGTCAATTGTACACAAATCCAC 59.785 41.667 5.13 0.00 39.55 4.02
1469 1481 3.447229 ACTAAATTTCCAAGGGCAATCCG 59.553 43.478 0.00 0.00 41.52 4.18
1473 1485 4.479158 AGACACTAAATTTCCAAGGGCAA 58.521 39.130 0.00 0.00 0.00 4.52
1483 1495 8.514330 TGTCAACCTAACAAGACACTAAATTT 57.486 30.769 0.00 0.00 36.20 1.82
1577 1596 9.871238 GTGATAGTATAAAAAGTCACCTCTTCA 57.129 33.333 0.00 0.00 32.08 3.02
1591 1610 6.039270 GGCACAGCATTTGGTGATAGTATAAA 59.961 38.462 16.02 0.00 45.66 1.40
1636 1655 9.607988 TGAATACATGATAAACCGTCTACAAAT 57.392 29.630 0.00 0.00 0.00 2.32
1684 1703 5.726397 TCCTATTGTACACAAACACGCTAT 58.274 37.500 0.00 0.00 39.55 2.97
1688 1707 6.721571 ATTCTCCTATTGTACACAAACACG 57.278 37.500 0.00 0.00 39.55 4.49
1801 1820 5.049405 CAGGAACATTTCGAAAGCAAGTACT 60.049 40.000 16.80 10.43 0.00 2.73
1802 1821 5.147162 CAGGAACATTTCGAAAGCAAGTAC 58.853 41.667 16.80 8.69 0.00 2.73
1803 1822 4.215399 CCAGGAACATTTCGAAAGCAAGTA 59.785 41.667 16.80 0.00 0.00 2.24
1804 1823 3.004734 CCAGGAACATTTCGAAAGCAAGT 59.995 43.478 16.80 9.13 0.00 3.16
1805 1824 3.004734 ACCAGGAACATTTCGAAAGCAAG 59.995 43.478 16.80 8.53 0.00 4.01
1811 1832 1.879380 CTGCACCAGGAACATTTCGAA 59.121 47.619 0.00 0.00 0.00 3.71
1847 1868 1.074084 TGCACGGGGAGGTCAAAATAA 59.926 47.619 0.00 0.00 0.00 1.40
1878 1899 1.135344 GTCCTAGGACGAGCACAGAAC 60.135 57.143 25.83 0.00 35.30 3.01
1949 1970 2.092323 GTTCCTATTGCCAAGGTCCAC 58.908 52.381 0.00 0.00 35.48 4.02
1954 1975 1.005924 AGTGGGTTCCTATTGCCAAGG 59.994 52.381 0.00 0.00 35.26 3.61
1957 1978 0.251916 CGAGTGGGTTCCTATTGCCA 59.748 55.000 0.00 0.00 0.00 4.92
1988 2009 4.511826 GGGCGAATAGGTACATTTCAGAAG 59.488 45.833 0.00 0.00 0.00 2.85
1991 2012 4.073293 AGGGCGAATAGGTACATTTCAG 57.927 45.455 0.00 0.00 0.00 3.02
1994 2015 4.595986 ACAAAGGGCGAATAGGTACATTT 58.404 39.130 0.00 0.00 0.00 2.32
1996 2017 3.926058 ACAAAGGGCGAATAGGTACAT 57.074 42.857 0.00 0.00 0.00 2.29
2002 2026 3.809832 CCATGACTACAAAGGGCGAATAG 59.190 47.826 0.00 0.00 0.00 1.73
2008 2032 2.359900 CACTCCATGACTACAAAGGGC 58.640 52.381 0.00 0.00 0.00 5.19
2027 2051 2.443887 GCAAAGAGCCAAAATCTGCA 57.556 45.000 0.00 0.00 37.23 4.41
2041 2065 7.871853 ACCAAGCTATAATATTAACGGCAAAG 58.128 34.615 15.19 8.53 0.00 2.77
2093 2199 5.441718 ACAATCATCTGGCTCTTTCCTAA 57.558 39.130 0.00 0.00 0.00 2.69
2104 2210 2.355756 CCAAACGCCTACAATCATCTGG 59.644 50.000 0.00 0.00 0.00 3.86
2113 2219 0.250510 TGCATGTCCAAACGCCTACA 60.251 50.000 0.00 0.00 0.00 2.74
2114 2220 0.168128 GTGCATGTCCAAACGCCTAC 59.832 55.000 0.00 0.00 0.00 3.18
2125 2231 5.051891 AGCAGAAAAATAGTGTGCATGTC 57.948 39.130 0.00 0.00 36.57 3.06
2141 2247 5.526111 GGCCATAACGAAATAACTAGCAGAA 59.474 40.000 0.00 0.00 0.00 3.02
2182 2289 4.985538 ACCTAAGAATGGAAAGAGCACAA 58.014 39.130 0.00 0.00 0.00 3.33
2591 2698 7.327032 GTGAGTGAAATTTCCTGATTGCTAAAC 59.673 37.037 15.48 2.69 0.00 2.01
2606 2713 3.648067 TGAGGTCCAGAGTGAGTGAAATT 59.352 43.478 0.00 0.00 0.00 1.82
2607 2714 3.007398 GTGAGGTCCAGAGTGAGTGAAAT 59.993 47.826 0.00 0.00 0.00 2.17
2608 2715 2.365617 GTGAGGTCCAGAGTGAGTGAAA 59.634 50.000 0.00 0.00 0.00 2.69
2609 2716 1.964223 GTGAGGTCCAGAGTGAGTGAA 59.036 52.381 0.00 0.00 0.00 3.18
2610 2717 1.621992 GTGAGGTCCAGAGTGAGTGA 58.378 55.000 0.00 0.00 0.00 3.41
2611 2718 0.242286 CGTGAGGTCCAGAGTGAGTG 59.758 60.000 0.00 0.00 0.00 3.51
2612 2719 1.528292 GCGTGAGGTCCAGAGTGAGT 61.528 60.000 0.00 0.00 0.00 3.41
2613 2720 1.214062 GCGTGAGGTCCAGAGTGAG 59.786 63.158 0.00 0.00 0.00 3.51
2614 2721 2.276116 GGCGTGAGGTCCAGAGTGA 61.276 63.158 0.00 0.00 0.00 3.41
2615 2722 2.262915 GGCGTGAGGTCCAGAGTG 59.737 66.667 0.00 0.00 0.00 3.51
2616 2723 2.118513 AGGCGTGAGGTCCAGAGT 59.881 61.111 0.00 0.00 0.00 3.24
2617 2724 2.279069 ACAGGCGTGAGGTCCAGAG 61.279 63.158 14.38 0.00 0.00 3.35
2618 2725 2.203640 ACAGGCGTGAGGTCCAGA 60.204 61.111 14.38 0.00 0.00 3.86
2619 2726 2.047844 CACAGGCGTGAGGTCCAG 60.048 66.667 14.38 0.00 46.80 3.86
2620 2727 2.842462 ACACAGGCGTGAGGTCCA 60.842 61.111 14.38 0.00 46.80 4.02
2621 2728 2.357517 CACACAGGCGTGAGGTCC 60.358 66.667 14.38 0.00 46.80 4.46
2622 2729 1.956170 CACACACAGGCGTGAGGTC 60.956 63.158 14.38 0.00 46.80 3.85
2623 2730 2.108976 CACACACAGGCGTGAGGT 59.891 61.111 14.38 7.97 46.80 3.85
2624 2731 1.956170 GTCACACACAGGCGTGAGG 60.956 63.158 14.38 7.31 46.80 3.86
2625 2732 1.956170 GGTCACACACAGGCGTGAG 60.956 63.158 14.38 7.96 46.80 3.51
2626 2733 2.108157 GGTCACACACAGGCGTGA 59.892 61.111 14.38 0.00 46.80 4.35
2628 2735 3.379865 AACGGTCACACACAGGCGT 62.380 57.895 0.00 0.00 0.00 5.68
2629 2736 2.587753 AACGGTCACACACAGGCG 60.588 61.111 0.00 0.00 0.00 5.52
2630 2737 2.542907 CCAACGGTCACACACAGGC 61.543 63.158 0.00 0.00 0.00 4.85
2631 2738 1.891919 CCCAACGGTCACACACAGG 60.892 63.158 0.00 0.00 0.00 4.00
2632 2739 1.153249 ACCCAACGGTCACACACAG 60.153 57.895 0.00 0.00 38.28 3.66
2633 2740 2.991321 ACCCAACGGTCACACACA 59.009 55.556 0.00 0.00 38.28 3.72
2642 2749 0.321298 AATGAGAACGGACCCAACGG 60.321 55.000 0.00 0.00 35.23 4.44
2643 2750 0.796312 CAATGAGAACGGACCCAACG 59.204 55.000 0.00 0.00 37.36 4.10
2644 2751 1.165270 CCAATGAGAACGGACCCAAC 58.835 55.000 0.00 0.00 0.00 3.77
2645 2752 0.037590 CCCAATGAGAACGGACCCAA 59.962 55.000 0.00 0.00 0.00 4.12
2646 2753 0.838554 TCCCAATGAGAACGGACCCA 60.839 55.000 0.00 0.00 0.00 4.51
2647 2754 0.392595 GTCCCAATGAGAACGGACCC 60.393 60.000 0.00 0.00 39.13 4.46
2648 2755 0.323629 TGTCCCAATGAGAACGGACC 59.676 55.000 2.80 0.00 43.50 4.46
2649 2756 1.676014 CCTGTCCCAATGAGAACGGAC 60.676 57.143 0.00 0.00 44.24 4.79
2650 2757 0.613260 CCTGTCCCAATGAGAACGGA 59.387 55.000 0.00 0.00 0.00 4.69
2651 2758 0.392998 CCCTGTCCCAATGAGAACGG 60.393 60.000 0.00 0.00 0.00 4.44
2652 2759 1.026718 GCCCTGTCCCAATGAGAACG 61.027 60.000 0.00 0.00 0.00 3.95
2653 2760 0.329596 AGCCCTGTCCCAATGAGAAC 59.670 55.000 0.00 0.00 0.00 3.01
2654 2761 0.329261 CAGCCCTGTCCCAATGAGAA 59.671 55.000 0.00 0.00 0.00 2.87
2655 2762 1.993653 CAGCCCTGTCCCAATGAGA 59.006 57.895 0.00 0.00 0.00 3.27
2656 2763 1.751927 GCAGCCCTGTCCCAATGAG 60.752 63.158 0.00 0.00 0.00 2.90
2657 2764 2.356278 GCAGCCCTGTCCCAATGA 59.644 61.111 0.00 0.00 0.00 2.57
2658 2765 2.757099 GGCAGCCCTGTCCCAATG 60.757 66.667 0.00 0.00 0.00 2.82
2680 2787 3.958147 ATCCCCGTGCGCAGACTTG 62.958 63.158 12.22 0.00 0.00 3.16
2681 2788 3.665675 GATCCCCGTGCGCAGACTT 62.666 63.158 12.22 0.00 0.00 3.01
2682 2789 4.148825 GATCCCCGTGCGCAGACT 62.149 66.667 12.22 0.00 0.00 3.24
2683 2790 4.148825 AGATCCCCGTGCGCAGAC 62.149 66.667 12.22 0.00 0.00 3.51
2684 2791 4.147449 CAGATCCCCGTGCGCAGA 62.147 66.667 12.22 4.52 0.00 4.26
2685 2792 4.457496 ACAGATCCCCGTGCGCAG 62.457 66.667 12.22 4.91 0.00 5.18
2686 2793 4.758251 CACAGATCCCCGTGCGCA 62.758 66.667 5.66 5.66 0.00 6.09
2687 2794 3.950794 TTCACAGATCCCCGTGCGC 62.951 63.158 0.00 0.00 33.03 6.09
2688 2795 2.100631 GTTCACAGATCCCCGTGCG 61.101 63.158 3.28 0.00 33.03 5.34
2689 2796 1.021390 CAGTTCACAGATCCCCGTGC 61.021 60.000 3.28 0.00 33.03 5.34
2690 2797 1.021390 GCAGTTCACAGATCCCCGTG 61.021 60.000 1.96 1.96 34.34 4.94
2691 2798 1.296715 GCAGTTCACAGATCCCCGT 59.703 57.895 0.00 0.00 0.00 5.28
2692 2799 0.321564 TTGCAGTTCACAGATCCCCG 60.322 55.000 0.00 0.00 0.00 5.73
2693 2800 1.168714 GTTGCAGTTCACAGATCCCC 58.831 55.000 0.00 0.00 0.00 4.81
2694 2801 0.798776 CGTTGCAGTTCACAGATCCC 59.201 55.000 0.00 0.00 0.00 3.85
2695 2802 0.798776 CCGTTGCAGTTCACAGATCC 59.201 55.000 0.00 0.00 0.00 3.36
2696 2803 0.798776 CCCGTTGCAGTTCACAGATC 59.201 55.000 0.00 0.00 0.00 2.75
2697 2804 0.396435 TCCCGTTGCAGTTCACAGAT 59.604 50.000 0.00 0.00 0.00 2.90
2698 2805 0.396435 ATCCCGTTGCAGTTCACAGA 59.604 50.000 0.00 0.00 0.00 3.41
2699 2806 0.798776 GATCCCGTTGCAGTTCACAG 59.201 55.000 0.00 0.00 0.00 3.66
2700 2807 0.107643 TGATCCCGTTGCAGTTCACA 59.892 50.000 0.00 0.00 0.00 3.58
2701 2808 1.197721 CTTGATCCCGTTGCAGTTCAC 59.802 52.381 0.00 0.00 0.00 3.18
2702 2809 1.522668 CTTGATCCCGTTGCAGTTCA 58.477 50.000 0.00 0.00 0.00 3.18
2703 2810 0.169009 GCTTGATCCCGTTGCAGTTC 59.831 55.000 0.00 0.00 0.00 3.01
2704 2811 0.250901 AGCTTGATCCCGTTGCAGTT 60.251 50.000 0.00 0.00 0.00 3.16
2705 2812 0.674895 GAGCTTGATCCCGTTGCAGT 60.675 55.000 0.00 0.00 0.00 4.40
2706 2813 1.699656 CGAGCTTGATCCCGTTGCAG 61.700 60.000 0.00 0.00 0.00 4.41
2707 2814 1.741401 CGAGCTTGATCCCGTTGCA 60.741 57.895 0.00 0.00 0.00 4.08
2708 2815 0.811616 ATCGAGCTTGATCCCGTTGC 60.812 55.000 10.93 0.00 0.00 4.17
2709 2816 0.933097 CATCGAGCTTGATCCCGTTG 59.067 55.000 13.91 0.00 0.00 4.10
2710 2817 0.824109 TCATCGAGCTTGATCCCGTT 59.176 50.000 13.91 0.00 0.00 4.44
2711 2818 0.103208 GTCATCGAGCTTGATCCCGT 59.897 55.000 13.91 0.00 0.00 5.28
2712 2819 0.936764 CGTCATCGAGCTTGATCCCG 60.937 60.000 13.91 14.13 39.71 5.14
2713 2820 0.103208 ACGTCATCGAGCTTGATCCC 59.897 55.000 13.91 6.42 40.62 3.85
2714 2821 2.776312 TACGTCATCGAGCTTGATCC 57.224 50.000 13.91 6.76 40.62 3.36
2715 2822 2.983136 CCATACGTCATCGAGCTTGATC 59.017 50.000 13.91 3.13 40.62 2.92
2716 2823 2.362397 ACCATACGTCATCGAGCTTGAT 59.638 45.455 10.93 10.93 40.62 2.57
2717 2824 1.749063 ACCATACGTCATCGAGCTTGA 59.251 47.619 6.01 6.01 40.62 3.02
2718 2825 2.209838 ACCATACGTCATCGAGCTTG 57.790 50.000 0.00 0.00 40.62 4.01
2719 2826 3.318275 ACATACCATACGTCATCGAGCTT 59.682 43.478 0.00 0.00 40.62 3.74
2720 2827 2.885266 ACATACCATACGTCATCGAGCT 59.115 45.455 0.00 0.00 40.62 4.09
2721 2828 3.284323 ACATACCATACGTCATCGAGC 57.716 47.619 0.00 0.00 40.62 5.03
2722 2829 4.227538 GGAACATACCATACGTCATCGAG 58.772 47.826 0.00 0.00 40.62 4.04
2723 2830 3.005050 GGGAACATACCATACGTCATCGA 59.995 47.826 0.00 0.00 40.62 3.59
2724 2831 3.314553 GGGAACATACCATACGTCATCG 58.685 50.000 0.00 0.00 43.34 3.84
2725 2832 3.314553 CGGGAACATACCATACGTCATC 58.685 50.000 0.00 0.00 0.00 2.92
2726 2833 2.036733 CCGGGAACATACCATACGTCAT 59.963 50.000 0.00 0.00 0.00 3.06
2727 2834 1.409790 CCGGGAACATACCATACGTCA 59.590 52.381 0.00 0.00 0.00 4.35
2728 2835 1.269936 CCCGGGAACATACCATACGTC 60.270 57.143 18.48 0.00 0.00 4.34
2729 2836 0.754472 CCCGGGAACATACCATACGT 59.246 55.000 18.48 0.00 0.00 3.57
2730 2837 0.034337 CCCCGGGAACATACCATACG 59.966 60.000 26.32 0.00 0.00 3.06
2731 2838 1.071228 GACCCCGGGAACATACCATAC 59.929 57.143 26.32 0.00 0.00 2.39
2732 2839 1.344189 TGACCCCGGGAACATACCATA 60.344 52.381 26.32 0.00 0.00 2.74
2733 2840 0.622154 TGACCCCGGGAACATACCAT 60.622 55.000 26.32 0.00 0.00 3.55
2734 2841 1.229561 TGACCCCGGGAACATACCA 60.230 57.895 26.32 5.66 0.00 3.25
2735 2842 1.222661 GTGACCCCGGGAACATACC 59.777 63.158 26.32 6.16 0.00 2.73
2736 2843 1.153509 CGTGACCCCGGGAACATAC 60.154 63.158 26.32 12.42 0.00 2.39
2737 2844 2.360767 CCGTGACCCCGGGAACATA 61.361 63.158 26.32 0.00 44.32 2.29
2738 2845 3.712907 CCGTGACCCCGGGAACAT 61.713 66.667 26.32 3.66 44.32 2.71
2745 2852 2.032634 CATGTTCACCGTGACCCCG 61.033 63.158 0.00 0.00 31.20 5.73
2746 2853 1.674322 CCATGTTCACCGTGACCCC 60.674 63.158 0.00 0.00 31.20 4.95
2747 2854 1.072505 ACCATGTTCACCGTGACCC 59.927 57.895 0.00 0.00 31.20 4.46
2748 2855 1.234615 CCACCATGTTCACCGTGACC 61.235 60.000 0.00 0.00 31.20 4.02
2749 2856 1.852067 GCCACCATGTTCACCGTGAC 61.852 60.000 0.00 0.00 31.20 3.67
2750 2857 1.599518 GCCACCATGTTCACCGTGA 60.600 57.895 0.00 0.00 31.20 4.35
2751 2858 2.953821 GCCACCATGTTCACCGTG 59.046 61.111 0.00 0.00 0.00 4.94
2752 2859 2.668212 CGCCACCATGTTCACCGT 60.668 61.111 0.00 0.00 0.00 4.83
2753 2860 3.430862 CCGCCACCATGTTCACCG 61.431 66.667 0.00 0.00 0.00 4.94
2754 2861 3.061848 CCCGCCACCATGTTCACC 61.062 66.667 0.00 0.00 0.00 4.02
2755 2862 2.282180 ACCCGCCACCATGTTCAC 60.282 61.111 0.00 0.00 0.00 3.18
2756 2863 2.282110 CACCCGCCACCATGTTCA 60.282 61.111 0.00 0.00 0.00 3.18
2757 2864 3.747976 GCACCCGCCACCATGTTC 61.748 66.667 0.00 0.00 0.00 3.18
2771 2878 1.474077 CCTGATTGCTAAACTGGGCAC 59.526 52.381 0.00 0.00 38.23 5.01
2772 2879 1.354031 TCCTGATTGCTAAACTGGGCA 59.646 47.619 0.00 0.00 36.62 5.36
2773 2880 2.128771 TCCTGATTGCTAAACTGGGC 57.871 50.000 0.00 0.00 0.00 5.36
2774 2881 5.665916 AATTTCCTGATTGCTAAACTGGG 57.334 39.130 0.00 0.00 0.00 4.45
2775 2882 6.587608 GTGAAATTTCCTGATTGCTAAACTGG 59.412 38.462 15.48 0.00 0.00 4.00
2776 2883 7.373493 AGTGAAATTTCCTGATTGCTAAACTG 58.627 34.615 15.48 0.00 0.00 3.16
2777 2884 7.231317 TGAGTGAAATTTCCTGATTGCTAAACT 59.769 33.333 15.48 7.32 0.00 2.66
2778 2885 7.327032 GTGAGTGAAATTTCCTGATTGCTAAAC 59.673 37.037 15.48 2.69 0.00 2.01
2779 2886 7.231317 AGTGAGTGAAATTTCCTGATTGCTAAA 59.769 33.333 15.48 0.00 0.00 1.85
2780 2887 6.716628 AGTGAGTGAAATTTCCTGATTGCTAA 59.283 34.615 15.48 0.00 0.00 3.09
2783 2890 5.182760 AGAGTGAGTGAAATTTCCTGATTGC 59.817 40.000 15.48 1.34 0.00 3.56
2788 2895 4.645535 TCCAGAGTGAGTGAAATTTCCTG 58.354 43.478 15.48 12.23 0.00 3.86
2790 2897 5.620879 GCAATCCAGAGTGAGTGAAATTTCC 60.621 44.000 15.48 7.09 32.28 3.13
2812 2919 2.554032 GCTTAAGAGAAAAGGCACTGCA 59.446 45.455 6.67 0.00 40.86 4.41
3107 3295 7.460910 TCAATTGGCATAGCTCATAAGGAATA 58.539 34.615 5.42 0.00 0.00 1.75
3235 3430 1.899814 ACCATGGCGAGTCTCTTAACA 59.100 47.619 13.04 0.00 0.00 2.41
3354 3549 5.046910 ACCATTGCAAAAATACGAGTCAG 57.953 39.130 1.71 0.00 0.00 3.51
3449 3644 2.655090 AACATGATGTCCACCACACA 57.345 45.000 0.00 0.00 38.04 3.72
4328 4569 1.135083 CATCTTCGCAACTCGTAGGGT 60.135 52.381 0.00 0.00 36.43 4.34
4334 4578 1.923204 CCTCTTCATCTTCGCAACTCG 59.077 52.381 0.00 0.00 40.15 4.18
4385 4631 2.902705 ACCAGCTAACAACTCGTTCA 57.097 45.000 0.00 0.00 39.14 3.18
4547 4811 2.037901 ACCACATCATGCAACCAACAA 58.962 42.857 0.00 0.00 0.00 2.83
4636 4900 3.636300 TGCTTATTTGTATGGCCCACATC 59.364 43.478 8.02 0.00 41.03 3.06
4662 4927 4.009675 TCTTCACATGTGGGTAGAAATGC 58.990 43.478 25.16 0.00 0.00 3.56
4715 5129 4.457603 TGTTTATTTGGAATGGGTCTCACG 59.542 41.667 0.00 0.00 0.00 4.35
4732 5146 4.331159 AGGGGGCAGTGTATTTGTTTAT 57.669 40.909 0.00 0.00 0.00 1.40
4747 5161 6.013293 AGAGTATTATTCTCACATTAGGGGGC 60.013 42.308 1.91 0.00 34.73 5.80
4749 5163 8.432805 ACAAGAGTATTATTCTCACATTAGGGG 58.567 37.037 1.91 0.00 34.73 4.79
4783 5198 9.695526 GAGCCATGTAATTGCATTAATAATTCA 57.304 29.630 6.26 1.17 37.46 2.57
4799 5214 3.572255 GGTTTTGAGTTGGAGCCATGTAA 59.428 43.478 0.00 0.00 0.00 2.41
4804 5219 1.398692 GTGGTTTTGAGTTGGAGCCA 58.601 50.000 0.00 0.00 0.00 4.75
4820 5235 5.613358 AGAAACTAAAATCAAGAGCGTGG 57.387 39.130 0.00 0.00 0.00 4.94
4825 5240 4.095036 GGCCCGAGAAACTAAAATCAAGAG 59.905 45.833 0.00 0.00 0.00 2.85
4911 5879 4.145807 AGGTAGGAGGACAACATCTATCG 58.854 47.826 0.00 0.00 0.00 2.92
4912 5880 6.778559 AGTTAGGTAGGAGGACAACATCTATC 59.221 42.308 0.00 0.00 0.00 2.08
4913 5881 6.684538 AGTTAGGTAGGAGGACAACATCTAT 58.315 40.000 0.00 0.00 0.00 1.98
4914 5882 6.088541 AGTTAGGTAGGAGGACAACATCTA 57.911 41.667 0.00 0.00 0.00 1.98
4915 5883 4.949121 AGTTAGGTAGGAGGACAACATCT 58.051 43.478 0.00 0.00 0.00 2.90
4916 5884 4.710375 TGAGTTAGGTAGGAGGACAACATC 59.290 45.833 0.00 0.00 0.00 3.06
4917 5885 4.684724 TGAGTTAGGTAGGAGGACAACAT 58.315 43.478 0.00 0.00 0.00 2.71
4918 5886 4.122337 TGAGTTAGGTAGGAGGACAACA 57.878 45.455 0.00 0.00 0.00 3.33
4919 5887 4.710375 TCATGAGTTAGGTAGGAGGACAAC 59.290 45.833 0.00 0.00 0.00 3.32
4920 5888 4.942944 TCATGAGTTAGGTAGGAGGACAA 58.057 43.478 0.00 0.00 0.00 3.18
4921 5889 4.603094 TCATGAGTTAGGTAGGAGGACA 57.397 45.455 0.00 0.00 0.00 4.02
4922 5890 5.390387 AGATCATGAGTTAGGTAGGAGGAC 58.610 45.833 0.09 0.00 0.00 3.85
4923 5891 5.671463 AGATCATGAGTTAGGTAGGAGGA 57.329 43.478 0.09 0.00 0.00 3.71
4924 5892 5.600484 ACAAGATCATGAGTTAGGTAGGAGG 59.400 44.000 4.68 0.00 0.00 4.30
4925 5893 6.511416 CACAAGATCATGAGTTAGGTAGGAG 58.489 44.000 4.68 0.00 0.00 3.69
4926 5894 5.163405 GCACAAGATCATGAGTTAGGTAGGA 60.163 44.000 4.68 0.00 0.00 2.94
4927 5895 5.053145 GCACAAGATCATGAGTTAGGTAGG 58.947 45.833 4.68 0.00 0.00 3.18
4928 5896 4.742167 CGCACAAGATCATGAGTTAGGTAG 59.258 45.833 4.68 0.00 0.00 3.18
4929 5897 4.682787 CGCACAAGATCATGAGTTAGGTA 58.317 43.478 4.68 0.00 0.00 3.08
4930 5898 3.525537 CGCACAAGATCATGAGTTAGGT 58.474 45.455 4.68 0.00 0.00 3.08
4931 5899 2.286294 GCGCACAAGATCATGAGTTAGG 59.714 50.000 0.30 0.00 0.00 2.69
4932 5900 3.193263 AGCGCACAAGATCATGAGTTAG 58.807 45.455 11.47 0.00 0.00 2.34
4933 5901 3.190079 GAGCGCACAAGATCATGAGTTA 58.810 45.455 11.47 0.00 0.00 2.24
4934 5902 2.005451 GAGCGCACAAGATCATGAGTT 58.995 47.619 11.47 0.00 0.00 3.01
4935 5903 1.066645 TGAGCGCACAAGATCATGAGT 60.067 47.619 11.47 0.00 30.95 3.41
4936 5904 1.648504 TGAGCGCACAAGATCATGAG 58.351 50.000 11.47 0.00 30.95 2.90
4937 5905 1.733912 GTTGAGCGCACAAGATCATGA 59.266 47.619 20.75 0.00 36.36 3.07
4938 5906 1.736126 AGTTGAGCGCACAAGATCATG 59.264 47.619 20.75 0.00 36.36 3.07
4939 5907 2.105006 AGTTGAGCGCACAAGATCAT 57.895 45.000 20.75 2.30 36.36 2.45
4940 5908 1.882912 AAGTTGAGCGCACAAGATCA 58.117 45.000 20.75 5.52 34.45 2.92
4941 5909 2.996621 AGTAAGTTGAGCGCACAAGATC 59.003 45.455 20.75 9.36 0.00 2.75
4942 5910 3.045601 AGTAAGTTGAGCGCACAAGAT 57.954 42.857 20.75 14.22 0.00 2.40
4943 5911 2.526304 AGTAAGTTGAGCGCACAAGA 57.474 45.000 20.75 6.58 0.00 3.02
4944 5912 4.152402 ACATTAGTAAGTTGAGCGCACAAG 59.848 41.667 20.75 8.15 0.00 3.16
4945 5913 4.062293 ACATTAGTAAGTTGAGCGCACAA 58.938 39.130 16.51 16.51 0.00 3.33
4946 5914 3.659786 ACATTAGTAAGTTGAGCGCACA 58.340 40.909 11.47 6.87 0.00 4.57
4947 5915 3.678072 TGACATTAGTAAGTTGAGCGCAC 59.322 43.478 11.47 3.13 0.00 5.34
4948 5916 3.920446 TGACATTAGTAAGTTGAGCGCA 58.080 40.909 11.47 0.00 0.00 6.09
4949 5917 4.174009 TCTGACATTAGTAAGTTGAGCGC 58.826 43.478 0.00 0.00 0.00 5.92
4950 5918 6.754209 AGAATCTGACATTAGTAAGTTGAGCG 59.246 38.462 0.00 0.00 0.00 5.03
4951 5919 7.223777 GGAGAATCTGACATTAGTAAGTTGAGC 59.776 40.741 0.00 0.00 33.73 4.26
4952 5920 8.474025 AGGAGAATCTGACATTAGTAAGTTGAG 58.526 37.037 0.00 0.00 33.73 3.02
4953 5921 8.367660 AGGAGAATCTGACATTAGTAAGTTGA 57.632 34.615 0.00 0.00 33.73 3.18
4956 5924 9.427821 ACATAGGAGAATCTGACATTAGTAAGT 57.572 33.333 0.00 0.00 33.73 2.24
4960 5928 8.762645 TGAAACATAGGAGAATCTGACATTAGT 58.237 33.333 0.00 0.00 33.73 2.24
4961 5929 9.605275 TTGAAACATAGGAGAATCTGACATTAG 57.395 33.333 0.00 0.00 33.73 1.73
4962 5930 9.605275 CTTGAAACATAGGAGAATCTGACATTA 57.395 33.333 0.00 0.00 33.73 1.90
4963 5931 8.324306 TCTTGAAACATAGGAGAATCTGACATT 58.676 33.333 0.00 0.00 33.73 2.71
4964 5932 7.768120 GTCTTGAAACATAGGAGAATCTGACAT 59.232 37.037 0.00 0.00 33.73 3.06
4965 5933 7.099764 GTCTTGAAACATAGGAGAATCTGACA 58.900 38.462 0.00 0.00 33.73 3.58
4966 5934 7.099764 TGTCTTGAAACATAGGAGAATCTGAC 58.900 38.462 0.00 0.00 33.73 3.51
4967 5935 7.244886 TGTCTTGAAACATAGGAGAATCTGA 57.755 36.000 0.00 0.00 33.73 3.27
4968 5936 7.912056 TTGTCTTGAAACATAGGAGAATCTG 57.088 36.000 0.00 0.00 33.73 2.90
4969 5937 7.939039 TGTTTGTCTTGAAACATAGGAGAATCT 59.061 33.333 0.00 0.00 40.18 2.40
4970 5938 8.099364 TGTTTGTCTTGAAACATAGGAGAATC 57.901 34.615 0.00 0.00 40.18 2.52
4971 5939 8.463930 TTGTTTGTCTTGAAACATAGGAGAAT 57.536 30.769 0.00 0.00 43.56 2.40
4972 5940 7.873719 TTGTTTGTCTTGAAACATAGGAGAA 57.126 32.000 0.00 0.00 43.56 2.87
4973 5941 7.873719 TTTGTTTGTCTTGAAACATAGGAGA 57.126 32.000 0.00 0.00 43.56 3.71
4974 5942 8.971321 CAATTTGTTTGTCTTGAAACATAGGAG 58.029 33.333 0.00 0.00 43.56 3.69
4975 5943 7.437862 GCAATTTGTTTGTCTTGAAACATAGGA 59.562 33.333 0.00 0.00 43.56 2.94
4976 5944 7.224362 TGCAATTTGTTTGTCTTGAAACATAGG 59.776 33.333 0.00 0.00 43.56 2.57
4977 5945 8.129161 TGCAATTTGTTTGTCTTGAAACATAG 57.871 30.769 0.00 0.00 43.56 2.23
4978 5946 8.484641 TTGCAATTTGTTTGTCTTGAAACATA 57.515 26.923 0.00 0.00 43.56 2.29
4979 5947 6.981762 TGCAATTTGTTTGTCTTGAAACAT 57.018 29.167 0.00 0.00 43.56 2.71
4980 5948 6.791887 TTGCAATTTGTTTGTCTTGAAACA 57.208 29.167 0.00 0.00 42.68 2.83
4981 5949 8.672214 AAATTGCAATTTGTTTGTCTTGAAAC 57.328 26.923 31.34 0.00 37.24 2.78
4982 5950 8.509690 TGAAATTGCAATTTGTTTGTCTTGAAA 58.490 25.926 35.57 7.05 38.64 2.69
4983 5951 8.037382 TGAAATTGCAATTTGTTTGTCTTGAA 57.963 26.923 35.57 7.37 38.64 2.69
4984 5952 7.606858 TGAAATTGCAATTTGTTTGTCTTGA 57.393 28.000 35.57 6.00 38.64 3.02
4985 5953 7.749570 TGTTGAAATTGCAATTTGTTTGTCTTG 59.250 29.630 35.57 0.00 38.64 3.02
4986 5954 7.750014 GTGTTGAAATTGCAATTTGTTTGTCTT 59.250 29.630 35.57 13.71 38.64 3.01
4987 5955 7.094890 TGTGTTGAAATTGCAATTTGTTTGTCT 60.095 29.630 35.57 14.41 38.64 3.41
4988 5956 7.020010 TGTGTTGAAATTGCAATTTGTTTGTC 58.980 30.769 35.57 22.67 38.64 3.18
4989 5957 6.906659 TGTGTTGAAATTGCAATTTGTTTGT 58.093 28.000 35.57 15.83 38.64 2.83
4990 5958 6.021311 GCTGTGTTGAAATTGCAATTTGTTTG 60.021 34.615 35.57 20.43 38.64 2.93
4991 5959 6.028987 GCTGTGTTGAAATTGCAATTTGTTT 58.971 32.000 35.57 17.58 38.64 2.83
4992 5960 5.571277 GCTGTGTTGAAATTGCAATTTGTT 58.429 33.333 35.57 17.26 38.64 2.83
4993 5961 4.260294 CGCTGTGTTGAAATTGCAATTTGT 60.260 37.500 35.57 17.98 38.64 2.83
4994 5962 4.025896 TCGCTGTGTTGAAATTGCAATTTG 60.026 37.500 35.57 22.06 38.64 2.32
4995 5963 4.118410 TCGCTGTGTTGAAATTGCAATTT 58.882 34.783 32.11 32.11 41.06 1.82
4996 5964 3.715495 TCGCTGTGTTGAAATTGCAATT 58.285 36.364 18.99 18.99 0.00 2.32
4997 5965 3.367992 TCGCTGTGTTGAAATTGCAAT 57.632 38.095 5.99 5.99 0.00 3.56
4998 5966 2.859526 TCGCTGTGTTGAAATTGCAA 57.140 40.000 0.00 0.00 0.00 4.08
4999 5967 3.750652 TCTATCGCTGTGTTGAAATTGCA 59.249 39.130 0.00 0.00 0.00 4.08
5000 5968 4.340894 TCTATCGCTGTGTTGAAATTGC 57.659 40.909 0.00 0.00 0.00 3.56
5001 5969 5.872635 ACATCTATCGCTGTGTTGAAATTG 58.127 37.500 0.00 0.00 0.00 2.32
5002 5970 6.500684 AACATCTATCGCTGTGTTGAAATT 57.499 33.333 0.00 0.00 33.85 1.82
5008 5976 3.055819 AGGACAACATCTATCGCTGTGTT 60.056 43.478 0.00 0.00 35.34 3.32
5009 5977 2.497675 AGGACAACATCTATCGCTGTGT 59.502 45.455 0.00 0.00 0.00 3.72
5010 5978 3.119291 GAGGACAACATCTATCGCTGTG 58.881 50.000 0.00 0.00 0.00 3.66
5011 5979 2.101582 GGAGGACAACATCTATCGCTGT 59.898 50.000 0.00 0.00 0.00 4.40
5012 5980 2.363680 AGGAGGACAACATCTATCGCTG 59.636 50.000 0.00 0.00 0.00 5.18
5013 5981 2.672098 AGGAGGACAACATCTATCGCT 58.328 47.619 0.00 0.00 0.00 4.93
5014 5982 3.305471 GGTAGGAGGACAACATCTATCGC 60.305 52.174 0.00 0.00 0.00 4.58
5042 6010 6.849502 AGTAAGTTGAATGCACAAGATCATG 58.150 36.000 0.00 0.00 0.00 3.07
5061 6029 7.060383 ACATAGGAGAATGGACATGAGTAAG 57.940 40.000 0.00 0.00 0.00 2.34
5071 6039 4.018506 TGCCTTGAAACATAGGAGAATGGA 60.019 41.667 0.00 0.00 33.13 3.41
5079 6047 6.890558 CAATTTGTTTGCCTTGAAACATAGG 58.109 36.000 0.00 0.00 43.56 2.57
5093 6061 6.021311 GCTGTGTTGAAATTGCAATTTGTTTG 60.021 34.615 35.57 20.43 38.64 2.93
5094 6062 6.028987 GCTGTGTTGAAATTGCAATTTGTTT 58.971 32.000 35.57 17.58 38.64 2.83
5095 6063 5.571277 GCTGTGTTGAAATTGCAATTTGTT 58.429 33.333 35.57 17.26 38.64 2.83
5096 6064 4.260294 CGCTGTGTTGAAATTGCAATTTGT 60.260 37.500 35.57 17.98 38.64 2.83
5097 6065 4.025896 TCGCTGTGTTGAAATTGCAATTTG 60.026 37.500 35.57 22.06 38.64 2.32
5098 6066 4.118410 TCGCTGTGTTGAAATTGCAATTT 58.882 34.783 32.11 32.11 41.06 1.82
5099 6067 3.715495 TCGCTGTGTTGAAATTGCAATT 58.285 36.364 18.99 18.99 0.00 2.32
5100 6068 3.367992 TCGCTGTGTTGAAATTGCAAT 57.632 38.095 5.99 5.99 0.00 3.56
5101 6069 2.859526 TCGCTGTGTTGAAATTGCAA 57.140 40.000 0.00 0.00 0.00 4.08
5102 6070 3.750652 TCTATCGCTGTGTTGAAATTGCA 59.249 39.130 0.00 0.00 0.00 4.08
5103 6071 4.340894 TCTATCGCTGTGTTGAAATTGC 57.659 40.909 0.00 0.00 0.00 3.56
5104 6072 5.872635 ACATCTATCGCTGTGTTGAAATTG 58.127 37.500 0.00 0.00 0.00 2.32
5105 6073 6.500684 AACATCTATCGCTGTGTTGAAATT 57.499 33.333 0.00 0.00 33.85 1.82
5111 6079 3.055819 AGGACAACATCTATCGCTGTGTT 60.056 43.478 0.00 0.00 35.34 3.32
5112 6080 2.497675 AGGACAACATCTATCGCTGTGT 59.502 45.455 0.00 0.00 0.00 3.72
5113 6081 3.119291 GAGGACAACATCTATCGCTGTG 58.881 50.000 0.00 0.00 0.00 3.66
5114 6082 2.101582 GGAGGACAACATCTATCGCTGT 59.898 50.000 0.00 0.00 0.00 4.40
5115 6083 2.363680 AGGAGGACAACATCTATCGCTG 59.636 50.000 0.00 0.00 0.00 5.18
5116 6084 2.672098 AGGAGGACAACATCTATCGCT 58.328 47.619 0.00 0.00 0.00 4.93
5117 6085 3.305471 GGTAGGAGGACAACATCTATCGC 60.305 52.174 0.00 0.00 0.00 4.58
5118 6086 4.145807 AGGTAGGAGGACAACATCTATCG 58.854 47.826 0.00 0.00 0.00 2.92
5119 6087 6.015265 GGTTAGGTAGGAGGACAACATCTATC 60.015 46.154 0.00 0.00 0.00 2.08
5120 6088 5.839606 GGTTAGGTAGGAGGACAACATCTAT 59.160 44.000 0.00 0.00 0.00 1.98
5121 6089 5.206587 GGTTAGGTAGGAGGACAACATCTA 58.793 45.833 0.00 0.00 0.00 1.98
5122 6090 4.031611 GGTTAGGTAGGAGGACAACATCT 58.968 47.826 0.00 0.00 0.00 2.90
5123 6091 3.134262 GGGTTAGGTAGGAGGACAACATC 59.866 52.174 0.00 0.00 0.00 3.06
5124 6092 3.113043 GGGTTAGGTAGGAGGACAACAT 58.887 50.000 0.00 0.00 0.00 2.71
5125 6093 2.158127 TGGGTTAGGTAGGAGGACAACA 60.158 50.000 0.00 0.00 0.00 3.33
5126 6094 2.543635 TGGGTTAGGTAGGAGGACAAC 58.456 52.381 0.00 0.00 0.00 3.32
5127 6095 3.112263 CATGGGTTAGGTAGGAGGACAA 58.888 50.000 0.00 0.00 0.00 3.18
5128 6096 2.316677 TCATGGGTTAGGTAGGAGGACA 59.683 50.000 0.00 0.00 0.00 4.02
5129 6097 3.042059 TCATGGGTTAGGTAGGAGGAC 57.958 52.381 0.00 0.00 0.00 3.85
5130 6098 5.633473 ATATCATGGGTTAGGTAGGAGGA 57.367 43.478 0.00 0.00 0.00 3.71
5131 6099 5.548056 ACAATATCATGGGTTAGGTAGGAGG 59.452 44.000 0.00 0.00 0.00 4.30
5132 6100 6.467677 CACAATATCATGGGTTAGGTAGGAG 58.532 44.000 0.00 0.00 0.00 3.69
5133 6101 5.221843 GCACAATATCATGGGTTAGGTAGGA 60.222 44.000 0.00 0.00 0.00 2.94
5134 6102 5.003804 GCACAATATCATGGGTTAGGTAGG 58.996 45.833 0.00 0.00 0.00 3.18
5135 6103 5.620206 TGCACAATATCATGGGTTAGGTAG 58.380 41.667 0.00 0.00 0.00 3.18
5136 6104 5.638530 TGCACAATATCATGGGTTAGGTA 57.361 39.130 0.00 0.00 0.00 3.08
5137 6105 4.518278 TGCACAATATCATGGGTTAGGT 57.482 40.909 0.00 0.00 0.00 3.08
5138 6106 5.535783 TGAATGCACAATATCATGGGTTAGG 59.464 40.000 0.00 0.00 0.00 2.69
5139 6107 6.638096 TGAATGCACAATATCATGGGTTAG 57.362 37.500 0.00 0.00 0.00 2.34
5140 6108 6.606796 AGTTGAATGCACAATATCATGGGTTA 59.393 34.615 0.00 0.00 32.36 2.85
5141 6109 5.422970 AGTTGAATGCACAATATCATGGGTT 59.577 36.000 0.00 0.00 32.36 4.11
5142 6110 4.957954 AGTTGAATGCACAATATCATGGGT 59.042 37.500 0.00 0.00 32.36 4.51
5143 6111 5.524971 AGTTGAATGCACAATATCATGGG 57.475 39.130 0.00 0.00 32.36 4.00
5144 6112 7.709947 AGTAAGTTGAATGCACAATATCATGG 58.290 34.615 0.00 0.00 32.36 3.66
5145 6113 8.400186 TGAGTAAGTTGAATGCACAATATCATG 58.600 33.333 0.00 0.00 32.36 3.07
5146 6114 8.510243 TGAGTAAGTTGAATGCACAATATCAT 57.490 30.769 0.00 0.00 32.36 2.45
5147 6115 7.920160 TGAGTAAGTTGAATGCACAATATCA 57.080 32.000 0.00 0.00 32.36 2.15
5148 6116 8.400947 ACATGAGTAAGTTGAATGCACAATATC 58.599 33.333 0.00 0.00 32.36 1.63
5149 6117 8.284945 ACATGAGTAAGTTGAATGCACAATAT 57.715 30.769 0.00 0.00 32.36 1.28
5150 6118 7.148255 GGACATGAGTAAGTTGAATGCACAATA 60.148 37.037 0.00 0.00 32.36 1.90
5151 6119 6.349611 GGACATGAGTAAGTTGAATGCACAAT 60.350 38.462 0.00 0.00 32.36 2.71
5152 6120 5.048782 GGACATGAGTAAGTTGAATGCACAA 60.049 40.000 0.00 0.00 0.00 3.33
5153 6121 4.455533 GGACATGAGTAAGTTGAATGCACA 59.544 41.667 0.00 0.00 0.00 4.57
5154 6122 4.455533 TGGACATGAGTAAGTTGAATGCAC 59.544 41.667 0.00 0.00 0.00 4.57
5155 6123 4.650734 TGGACATGAGTAAGTTGAATGCA 58.349 39.130 0.00 0.00 0.00 3.96
5156 6124 5.824904 ATGGACATGAGTAAGTTGAATGC 57.175 39.130 0.00 0.00 0.00 3.56
5157 6125 7.201679 GGAGAATGGACATGAGTAAGTTGAATG 60.202 40.741 0.00 0.00 0.00 2.67
5158 6126 6.825721 GGAGAATGGACATGAGTAAGTTGAAT 59.174 38.462 0.00 0.00 0.00 2.57
5159 6127 6.013379 AGGAGAATGGACATGAGTAAGTTGAA 60.013 38.462 0.00 0.00 0.00 2.69
5160 6128 5.485353 AGGAGAATGGACATGAGTAAGTTGA 59.515 40.000 0.00 0.00 0.00 3.18
5161 6129 5.738909 AGGAGAATGGACATGAGTAAGTTG 58.261 41.667 0.00 0.00 0.00 3.16
5162 6130 7.126421 ACATAGGAGAATGGACATGAGTAAGTT 59.874 37.037 0.00 0.00 0.00 2.66
5163 6131 6.613271 ACATAGGAGAATGGACATGAGTAAGT 59.387 38.462 0.00 0.00 0.00 2.24
5164 6132 7.060383 ACATAGGAGAATGGACATGAGTAAG 57.940 40.000 0.00 0.00 0.00 2.34
5165 6133 7.437713 AACATAGGAGAATGGACATGAGTAA 57.562 36.000 0.00 0.00 0.00 2.24
5166 6134 7.125659 TGAAACATAGGAGAATGGACATGAGTA 59.874 37.037 0.00 0.00 0.00 2.59
5167 6135 5.965033 AACATAGGAGAATGGACATGAGT 57.035 39.130 0.00 0.00 0.00 3.41
5168 6136 6.351711 TGAAACATAGGAGAATGGACATGAG 58.648 40.000 0.00 0.00 0.00 2.90
5169 6137 6.312141 TGAAACATAGGAGAATGGACATGA 57.688 37.500 0.00 0.00 0.00 3.07
5170 6138 7.395190 TTTGAAACATAGGAGAATGGACATG 57.605 36.000 0.00 0.00 0.00 3.21
5171 6139 8.599624 ATTTTGAAACATAGGAGAATGGACAT 57.400 30.769 0.00 0.00 0.00 3.06
5172 6140 7.122650 GGATTTTGAAACATAGGAGAATGGACA 59.877 37.037 0.00 0.00 0.00 4.02
5173 6141 7.122650 TGGATTTTGAAACATAGGAGAATGGAC 59.877 37.037 0.00 0.00 0.00 4.02
5174 6142 7.181361 TGGATTTTGAAACATAGGAGAATGGA 58.819 34.615 0.00 0.00 0.00 3.41
5175 6143 7.408756 TGGATTTTGAAACATAGGAGAATGG 57.591 36.000 0.00 0.00 0.00 3.16
5176 6144 9.709495 TTTTGGATTTTGAAACATAGGAGAATG 57.291 29.630 0.00 0.00 0.00 2.67
5178 6146 9.709495 CATTTTGGATTTTGAAACATAGGAGAA 57.291 29.630 0.00 0.00 0.00 2.87
5179 6147 8.869109 ACATTTTGGATTTTGAAACATAGGAGA 58.131 29.630 0.00 0.00 0.00 3.71
5180 6148 9.492973 AACATTTTGGATTTTGAAACATAGGAG 57.507 29.630 0.00 0.00 0.00 3.69
5217 6185 4.917906 AGTAGGTCCTTTGCAAGATTCT 57.082 40.909 0.00 0.25 0.00 2.40
5244 6213 2.869801 AGTCTATGAAGAGTCTCGAGCG 59.130 50.000 7.81 0.00 28.63 5.03
5253 6222 8.849168 AGAGATCATGTTGTAGTCTATGAAGAG 58.151 37.037 0.00 0.00 33.71 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.