Multiple sequence alignment - TraesCS5D01G098400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G098400 chr5D 100.000 6236 0 0 1 6236 109820199 109813964 0.000000e+00 11516.0
1 TraesCS5D01G098400 chr5D 90.253 277 13 4 5580 5842 99924792 99924516 3.580000e-92 350.0
2 TraesCS5D01G098400 chr5D 80.544 478 72 13 1 459 336043665 336044140 1.290000e-91 348.0
3 TraesCS5D01G098400 chr5D 98.276 174 3 0 6063 6236 112948492 112948319 7.850000e-79 305.0
4 TraesCS5D01G098400 chr5D 91.379 174 12 1 6063 6236 99922313 99922143 1.050000e-57 235.0
5 TraesCS5D01G098400 chr5B 94.100 5847 242 54 1 5818 122838357 122844129 0.000000e+00 8791.0
6 TraesCS5D01G098400 chr5B 91.429 175 14 1 6063 6236 123691897 123691723 8.080000e-59 239.0
7 TraesCS5D01G098400 chr5B 88.764 178 19 1 6060 6236 122846168 122846345 3.790000e-52 217.0
8 TraesCS5D01G098400 chr5A 96.068 5213 150 29 528 5697 117493746 117498946 0.000000e+00 8440.0
9 TraesCS5D01G098400 chr5A 91.019 412 20 6 5445 5839 102834921 102835332 1.980000e-149 540.0
10 TraesCS5D01G098400 chr5A 90.805 174 11 5 6063 6235 117503871 117504040 1.750000e-55 228.0
11 TraesCS5D01G098400 chr5A 92.029 138 11 0 6060 6197 102835484 102835621 1.770000e-45 195.0
12 TraesCS5D01G098400 chr2A 83.122 474 62 9 1 457 2742220 2741748 3.480000e-112 416.0
13 TraesCS5D01G098400 chr2A 91.304 46 4 0 6016 6061 515524352 515524307 5.220000e-06 63.9
14 TraesCS5D01G098400 chr7D 80.252 476 71 13 1 459 58135911 58136380 2.790000e-88 337.0
15 TraesCS5D01G098400 chr6B 89.925 268 13 3 5587 5840 184015746 184015479 3.600000e-87 333.0
16 TraesCS5D01G098400 chr6B 91.954 174 14 0 6063 6236 184009630 184009457 1.740000e-60 244.0
17 TraesCS5D01G098400 chr3B 79.958 474 77 9 1 457 800217450 800217922 3.600000e-87 333.0
18 TraesCS5D01G098400 chr3B 95.455 44 2 0 6018 6061 11603520 11603477 3.120000e-08 71.3
19 TraesCS5D01G098400 chr6A 80.171 469 72 14 8 458 38764286 38764751 1.300000e-86 331.0
20 TraesCS5D01G098400 chr1A 79.823 451 69 14 1 433 299260164 299259718 6.070000e-80 309.0
21 TraesCS5D01G098400 chr1A 96.000 50 1 1 6013 6061 513381876 513381925 5.180000e-11 80.5
22 TraesCS5D01G098400 chr6D 81.378 392 49 16 2 375 89736018 89736403 1.310000e-76 298.0
23 TraesCS5D01G098400 chr3A 79.075 411 70 8 1 397 728254753 728255161 1.030000e-67 268.0
24 TraesCS5D01G098400 chr3A 89.796 49 5 0 6016 6064 554021944 554021992 5.220000e-06 63.9
25 TraesCS5D01G098400 chr7B 84.524 252 37 2 1 250 590193426 590193677 1.340000e-61 248.0
26 TraesCS5D01G098400 chr4A 76.749 443 92 11 22 458 137522786 137523223 2.910000e-58 237.0
27 TraesCS5D01G098400 chr4A 76.567 367 77 8 56 420 667262700 667262341 6.380000e-45 193.0
28 TraesCS5D01G098400 chr4A 76.567 367 77 8 56 420 667286305 667285946 6.380000e-45 193.0
29 TraesCS5D01G098400 chr4D 86.634 202 23 2 251 449 24764160 24764360 2.930000e-53 220.0
30 TraesCS5D01G098400 chr2D 78.182 330 54 15 137 456 640021550 640021229 1.770000e-45 195.0
31 TraesCS5D01G098400 chr2D 100.000 28 0 0 3706 3733 159336611 159336638 1.100000e-02 52.8
32 TraesCS5D01G098400 chr3D 93.182 44 3 0 6018 6061 12229666 12229623 1.450000e-06 65.8
33 TraesCS5D01G098400 chr3D 91.667 48 3 1 6017 6064 368322056 368322010 1.450000e-06 65.8
34 TraesCS5D01G098400 chr3D 92.857 42 2 1 6018 6059 579304676 579304636 6.750000e-05 60.2
35 TraesCS5D01G098400 chrUn 89.796 49 5 0 6013 6061 302070973 302071021 5.220000e-06 63.9
36 TraesCS5D01G098400 chrUn 89.796 49 5 0 6013 6061 302084642 302084690 5.220000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G098400 chr5D 109813964 109820199 6235 True 11516.0 11516 100.000 1 6236 1 chr5D.!!$R1 6235
1 TraesCS5D01G098400 chr5D 99922143 99924792 2649 True 292.5 350 90.816 5580 6236 2 chr5D.!!$R3 656
2 TraesCS5D01G098400 chr5B 122838357 122846345 7988 False 4504.0 8791 91.432 1 6236 2 chr5B.!!$F1 6235
3 TraesCS5D01G098400 chr5A 117493746 117498946 5200 False 8440.0 8440 96.068 528 5697 1 chr5A.!!$F1 5169
4 TraesCS5D01G098400 chr5A 102834921 102835621 700 False 367.5 540 91.524 5445 6197 2 chr5A.!!$F3 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.040781 GAGTCTAGCATCGTCGGAGC 60.041 60.000 0.00 0.0 0.00 4.70 F
265 266 0.316689 GTCCGCACAACAACTTTCCG 60.317 55.000 0.00 0.0 0.00 4.30 F
777 786 0.333312 TTCCGCTCTCTCCCTCTCTT 59.667 55.000 0.00 0.0 0.00 2.85 F
1241 1303 0.991920 AGCCGGGGAAGAGATTGAAA 59.008 50.000 2.18 0.0 0.00 2.69 F
1266 1328 1.006220 GGGCGTTTCTTGCTTTGGG 60.006 57.895 0.00 0.0 0.00 4.12 F
2466 2532 2.810274 GTTTCTTCGGAAAGGTACCCAC 59.190 50.000 8.74 0.0 43.56 4.61 F
3282 3351 3.981071 TCGGGAGATGACAAGATTGTT 57.019 42.857 0.00 0.0 42.43 2.83 F
3653 3722 0.978146 CCTCGAGAACCCCCAGTGAT 60.978 60.000 15.71 0.0 0.00 3.06 F
4954 5026 1.080569 CCAGTGCCCAAACGCATTC 60.081 57.895 0.00 0.0 41.70 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1310 1.006220 CCCAAAGCAAGAAACGCCC 60.006 57.895 0.00 0.00 0.00 6.13 R
1476 1538 1.652124 GCATGCTCAAGCGAAAACATG 59.348 47.619 11.37 7.44 45.83 3.21 R
2466 2532 3.002791 TCTCTTGAATTTAGCACAGCGG 58.997 45.455 0.00 0.00 0.00 5.52 R
2973 3040 4.091549 AGGAGTGGAATGCATTTCATTGT 58.908 39.130 23.10 11.27 44.95 2.71 R
3081 3150 4.832266 TGAGGCATAACAGTTGGTCAAAAT 59.168 37.500 0.00 0.00 0.00 1.82 R
3546 3615 5.998454 GCATCTTGTGAGTATGCTAATGT 57.002 39.130 0.00 0.00 42.15 2.71 R
4739 4811 2.029728 GCCGAAATGAGAGACGTCATTG 59.970 50.000 19.50 0.00 44.72 2.82 R
5156 5229 3.476552 GTCTGTTGGGATGTTGAACTGA 58.523 45.455 0.00 0.00 0.00 3.41 R
5955 10008 0.470268 ATAGTTCCGAGAGAGGGGGC 60.470 60.000 0.00 0.00 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.434652 ACTCAGTAGGAATAATATCTCCCACG 59.565 42.308 0.00 0.00 29.68 4.94
52 53 2.108362 CACGTTCTATCCCCGCCC 59.892 66.667 0.00 0.00 0.00 6.13
78 79 0.040781 GAGTCTAGCATCGTCGGAGC 60.041 60.000 0.00 0.00 0.00 4.70
79 80 1.369448 GTCTAGCATCGTCGGAGCG 60.369 63.158 0.00 0.00 0.00 5.03
109 110 5.283457 AGGTTTATCTCCTTTGGATCTCG 57.717 43.478 0.00 0.00 30.18 4.04
111 112 3.371102 TTATCTCCTTTGGATCTCGCG 57.629 47.619 0.00 0.00 0.00 5.87
116 117 1.202533 TCCTTTGGATCTCGCGGATTC 60.203 52.381 6.13 7.61 34.33 2.52
119 120 1.672854 TTGGATCTCGCGGATTCGGT 61.673 55.000 6.13 0.00 32.62 4.69
133 134 2.430382 TTCGGTCGGTGCTGGTCTTC 62.430 60.000 0.00 0.00 0.00 2.87
141 142 1.407437 GGTGCTGGTCTTCGATGGATT 60.407 52.381 0.00 0.00 0.00 3.01
151 152 5.105756 GGTCTTCGATGGATTTGTTTGGATT 60.106 40.000 0.00 0.00 0.00 3.01
152 153 6.389906 GTCTTCGATGGATTTGTTTGGATTT 58.610 36.000 0.00 0.00 0.00 2.17
161 162 4.993029 TTTGTTTGGATTTGGTCTTCGT 57.007 36.364 0.00 0.00 0.00 3.85
169 170 2.607631 TTTGGTCTTCGTCCGTCTTT 57.392 45.000 0.00 0.00 0.00 2.52
183 184 5.277154 CGTCCGTCTTTGTTTGAGTGTTTAT 60.277 40.000 0.00 0.00 0.00 1.40
215 216 8.792831 GATCCTTTTGATCTACGACGTTATTA 57.207 34.615 5.50 0.00 45.46 0.98
219 220 8.205948 CCTTTTGATCTACGACGTTATTATTCG 58.794 37.037 5.50 0.00 38.73 3.34
247 248 2.281070 CTGCTCTGGTGCGTTGGT 60.281 61.111 0.00 0.00 35.36 3.67
262 263 1.135228 GTTGGTCCGCACAACAACTTT 60.135 47.619 5.70 0.00 45.62 2.66
265 266 0.316689 GTCCGCACAACAACTTTCCG 60.317 55.000 0.00 0.00 0.00 4.30
266 267 0.462225 TCCGCACAACAACTTTCCGA 60.462 50.000 0.00 0.00 0.00 4.55
267 268 0.316689 CCGCACAACAACTTTCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
268 269 0.655733 CGCACAACAACTTTCCGACT 59.344 50.000 0.00 0.00 0.00 4.18
269 270 1.594518 CGCACAACAACTTTCCGACTG 60.595 52.381 0.00 0.00 0.00 3.51
270 271 1.400494 GCACAACAACTTTCCGACTGT 59.600 47.619 0.00 0.00 0.00 3.55
271 272 2.538939 GCACAACAACTTTCCGACTGTC 60.539 50.000 0.00 0.00 0.00 3.51
272 273 2.936498 CACAACAACTTTCCGACTGTCT 59.064 45.455 6.21 0.00 0.00 3.41
290 291 7.516312 CGACTGTCTACTACAACAAGGTTTTTC 60.516 40.741 6.21 0.00 37.74 2.29
291 292 6.541278 ACTGTCTACTACAACAAGGTTTTTCC 59.459 38.462 0.00 0.00 37.74 3.13
299 300 1.036707 CAAGGTTTTTCCGGCTCCAA 58.963 50.000 0.00 0.00 41.99 3.53
344 345 3.882025 GCCTTCGGCTCACTTCAG 58.118 61.111 0.00 0.00 46.69 3.02
350 351 0.601046 TCGGCTCACTTCAGTGCTTG 60.601 55.000 1.74 0.00 45.25 4.01
363 364 1.538512 AGTGCTTGTAGTCGTCGCTAA 59.461 47.619 0.00 0.00 0.00 3.09
367 368 2.516923 CTTGTAGTCGTCGCTAAGTGG 58.483 52.381 0.00 0.00 0.00 4.00
434 435 7.072263 ACTACCATGATTGAAGAGGAATAGG 57.928 40.000 0.00 0.00 0.00 2.57
447 448 5.739959 AGAGGAATAGGCTGAAAGTTTCTC 58.260 41.667 16.33 8.22 35.30 2.87
591 598 1.402968 CAAGCACCGGATGAATGGAAG 59.597 52.381 9.46 0.00 0.00 3.46
694 703 6.869421 AAATCATAAGCAACCGAAAAATCG 57.131 33.333 0.00 0.00 0.00 3.34
765 774 1.971357 TCCCATATCCTCTTTCCGCTC 59.029 52.381 0.00 0.00 0.00 5.03
766 775 1.974236 CCCATATCCTCTTTCCGCTCT 59.026 52.381 0.00 0.00 0.00 4.09
767 776 2.028567 CCCATATCCTCTTTCCGCTCTC 60.029 54.545 0.00 0.00 0.00 3.20
768 777 2.896685 CCATATCCTCTTTCCGCTCTCT 59.103 50.000 0.00 0.00 0.00 3.10
769 778 3.056891 CCATATCCTCTTTCCGCTCTCTC 60.057 52.174 0.00 0.00 0.00 3.20
770 779 1.408969 ATCCTCTTTCCGCTCTCTCC 58.591 55.000 0.00 0.00 0.00 3.71
771 780 0.684805 TCCTCTTTCCGCTCTCTCCC 60.685 60.000 0.00 0.00 0.00 4.30
772 781 0.686112 CCTCTTTCCGCTCTCTCCCT 60.686 60.000 0.00 0.00 0.00 4.20
777 786 0.333312 TTCCGCTCTCTCCCTCTCTT 59.667 55.000 0.00 0.00 0.00 2.85
813 830 2.564721 GCAACTTGGCGCTCCCTTT 61.565 57.895 7.64 0.00 0.00 3.11
814 831 1.286880 CAACTTGGCGCTCCCTTTG 59.713 57.895 7.64 0.99 0.00 2.77
815 832 1.152756 AACTTGGCGCTCCCTTTGT 60.153 52.632 7.64 0.00 0.00 2.83
816 833 1.172812 AACTTGGCGCTCCCTTTGTC 61.173 55.000 7.64 0.00 0.00 3.18
817 834 1.302832 CTTGGCGCTCCCTTTGTCT 60.303 57.895 7.64 0.00 0.00 3.41
818 835 1.301677 CTTGGCGCTCCCTTTGTCTC 61.302 60.000 7.64 0.00 0.00 3.36
819 836 1.768684 TTGGCGCTCCCTTTGTCTCT 61.769 55.000 7.64 0.00 0.00 3.10
1181 1243 1.748122 CTCTGGATGCTTGGCGCTT 60.748 57.895 7.64 0.00 40.11 4.68
1233 1295 2.963599 AAAGTTTTAGCCGGGGAAGA 57.036 45.000 2.18 0.00 0.00 2.87
1241 1303 0.991920 AGCCGGGGAAGAGATTGAAA 59.008 50.000 2.18 0.00 0.00 2.69
1248 1310 1.661112 GGAAGAGATTGAAAGGACGCG 59.339 52.381 3.53 3.53 0.00 6.01
1266 1328 1.006220 GGGCGTTTCTTGCTTTGGG 60.006 57.895 0.00 0.00 0.00 4.12
1404 1466 3.821033 GCACTTCACTTGTGGGTCTATTT 59.179 43.478 0.64 0.00 36.08 1.40
1476 1538 5.572211 TGCGATGAATATTTTCTTGTCAGC 58.428 37.500 0.00 0.00 32.78 4.26
1549 1613 9.321562 GATCATCCACAATTGAATTAGCAAAAT 57.678 29.630 13.59 0.00 0.00 1.82
1603 1667 5.178067 GGATTGATGTTGCTTTTGTTCTTGG 59.822 40.000 0.00 0.00 0.00 3.61
1634 1698 7.698836 ATGTTTCAACTTTCAACTAACATGC 57.301 32.000 0.00 0.00 34.51 4.06
1818 1882 5.843019 AGATTCTAGTCCTTTTCCACCAA 57.157 39.130 0.00 0.00 0.00 3.67
1827 1891 5.711976 AGTCCTTTTCCACCAAATGATAGTG 59.288 40.000 0.00 0.00 0.00 2.74
1913 1978 8.455682 TCTTCGTCAAATAGTTTTGTTTTGTCT 58.544 29.630 0.00 0.00 42.37 3.41
1925 1990 4.882671 TGTTTTGTCTTCTTCTGACAGC 57.117 40.909 0.00 0.00 43.98 4.40
2011 2076 4.348168 CCCTGCTGGACTATATGGTAAAGT 59.652 45.833 11.88 0.00 35.39 2.66
2350 2416 3.429492 TGCAGCTCTCTATGCTAGCTAT 58.571 45.455 17.23 10.27 44.58 2.97
2466 2532 2.810274 GTTTCTTCGGAAAGGTACCCAC 59.190 50.000 8.74 0.00 43.56 4.61
2945 3011 6.007485 TGGTATGGTTGCTAATCCACATTA 57.993 37.500 0.00 0.00 36.50 1.90
2946 3012 6.427441 TGGTATGGTTGCTAATCCACATTAA 58.573 36.000 0.00 0.00 36.50 1.40
3024 3091 4.396166 AGCAAGTGTTAGCGATTTAGCAAT 59.604 37.500 0.00 0.00 40.15 3.56
3027 3095 5.725110 AGTGTTAGCGATTTAGCAATGAG 57.275 39.130 0.00 0.00 40.15 2.90
3081 3150 6.371809 ACAAATAGCTTGTTTTCTTGTCGA 57.628 33.333 0.00 0.00 46.49 4.20
3248 3317 8.839310 ACGATATAGAGCTTGCATCTTTTTAT 57.161 30.769 0.00 0.00 0.00 1.40
3282 3351 3.981071 TCGGGAGATGACAAGATTGTT 57.019 42.857 0.00 0.00 42.43 2.83
3546 3615 8.985315 AATCTTGAATCACCAGATTTAGCATA 57.015 30.769 4.76 0.00 44.30 3.14
3653 3722 0.978146 CCTCGAGAACCCCCAGTGAT 60.978 60.000 15.71 0.00 0.00 3.06
3786 3855 6.808321 ATATACTAGAGTCCAGGCACAAAA 57.192 37.500 0.00 0.00 0.00 2.44
3789 3858 2.957402 AGAGTCCAGGCACAAAATGA 57.043 45.000 0.00 0.00 0.00 2.57
4018 4089 3.134804 AGACAGTTCTACCTGCAAGTGTT 59.865 43.478 0.00 0.00 36.50 3.32
4497 4569 3.152341 CCTTGCTTCCATTGTGAGAACT 58.848 45.455 0.00 0.00 0.00 3.01
4787 4859 1.604755 GCGATCCTGTCTGTATCGTCT 59.395 52.381 6.57 0.00 43.33 4.18
4949 5021 1.199097 GAACATACCAGTGCCCAAACG 59.801 52.381 0.00 0.00 0.00 3.60
4954 5026 1.080569 CCAGTGCCCAAACGCATTC 60.081 57.895 0.00 0.00 41.70 2.67
4999 5071 2.098117 GCCAAGTGTTATGTCATGAGGC 59.902 50.000 0.00 0.00 0.00 4.70
5123 5196 7.144722 ACACGTGAACATCAAATTGATATGT 57.855 32.000 25.01 2.23 34.28 2.29
5156 5229 8.458573 TGTTTATGATTCAACTGTTAAGGTGT 57.541 30.769 0.00 0.00 42.22 4.16
5381 5455 1.610554 GACCCGGAGTCGAAATGGGA 61.611 60.000 17.38 0.00 42.77 4.37
5412 5486 6.673154 TGCAATGATCTGAAGATGTTGTAG 57.327 37.500 0.00 0.00 34.37 2.74
5680 5761 1.892819 GCACTACAGCTGCTCCCTCA 61.893 60.000 15.27 0.00 0.00 3.86
5690 5771 2.682352 GCTGCTCCCTCAGAGATTTTTC 59.318 50.000 0.00 0.00 46.50 2.29
5706 5788 3.412237 TTTTCCTCTTCGGTCCGATTT 57.588 42.857 16.23 0.00 35.23 2.17
5842 7294 1.361668 GGGCTCACGTGCTGTACATG 61.362 60.000 11.67 0.00 41.41 3.21
5843 7295 1.421485 GCTCACGTGCTGTACATGC 59.579 57.895 11.67 3.09 39.03 4.06
5844 7296 1.970917 GCTCACGTGCTGTACATGCC 61.971 60.000 11.67 5.69 39.03 4.40
5845 7297 0.670239 CTCACGTGCTGTACATGCCA 60.670 55.000 11.67 1.86 39.03 4.92
5846 7298 0.670239 TCACGTGCTGTACATGCCAG 60.670 55.000 11.67 8.29 39.03 4.85
5850 7302 2.821366 GCTGTACATGCCAGCGCT 60.821 61.111 18.74 2.64 45.10 5.92
5851 7303 2.817423 GCTGTACATGCCAGCGCTC 61.817 63.158 18.74 0.00 45.10 5.03
5852 7304 1.448365 CTGTACATGCCAGCGCTCA 60.448 57.895 7.13 3.41 35.36 4.26
5853 7305 1.003959 TGTACATGCCAGCGCTCAA 60.004 52.632 7.13 0.00 35.36 3.02
5854 7306 1.020861 TGTACATGCCAGCGCTCAAG 61.021 55.000 7.13 2.86 35.36 3.02
5855 7307 1.021390 GTACATGCCAGCGCTCAAGT 61.021 55.000 7.13 9.75 35.36 3.16
5856 7308 0.534873 TACATGCCAGCGCTCAAGTA 59.465 50.000 7.13 8.61 35.36 2.24
5857 7309 0.107508 ACATGCCAGCGCTCAAGTAT 60.108 50.000 7.13 0.99 35.36 2.12
5858 7310 1.138859 ACATGCCAGCGCTCAAGTATA 59.861 47.619 7.13 0.00 35.36 1.47
5859 7311 2.224378 ACATGCCAGCGCTCAAGTATAT 60.224 45.455 7.13 0.00 35.36 0.86
5860 7312 3.006859 ACATGCCAGCGCTCAAGTATATA 59.993 43.478 7.13 0.00 35.36 0.86
5861 7313 3.961480 TGCCAGCGCTCAAGTATATAT 57.039 42.857 7.13 0.00 35.36 0.86
5862 7314 5.105351 ACATGCCAGCGCTCAAGTATATATA 60.105 40.000 7.13 0.00 35.36 0.86
5863 7315 5.400066 TGCCAGCGCTCAAGTATATATAA 57.600 39.130 7.13 0.00 35.36 0.98
5864 7316 5.789521 TGCCAGCGCTCAAGTATATATAAA 58.210 37.500 7.13 0.00 35.36 1.40
5865 7317 5.869344 TGCCAGCGCTCAAGTATATATAAAG 59.131 40.000 7.13 0.00 35.36 1.85
5866 7318 5.869888 GCCAGCGCTCAAGTATATATAAAGT 59.130 40.000 7.13 0.00 0.00 2.66
5867 7319 7.033791 GCCAGCGCTCAAGTATATATAAAGTA 58.966 38.462 7.13 0.00 0.00 2.24
5868 7320 7.009357 GCCAGCGCTCAAGTATATATAAAGTAC 59.991 40.741 7.13 0.00 0.00 2.73
5869 7321 8.244802 CCAGCGCTCAAGTATATATAAAGTACT 58.755 37.037 7.13 0.00 0.00 2.73
5895 7347 8.834004 AGAAGTGTATAACTACAGGGTATGAA 57.166 34.615 0.00 0.00 38.56 2.57
5897 7349 9.880157 GAAGTGTATAACTACAGGGTATGAAAA 57.120 33.333 0.00 0.00 38.56 2.29
5928 8697 8.322091 ACAATTTTAGTACCTAGTCTCAATGCT 58.678 33.333 0.00 0.00 0.00 3.79
5929 8698 8.607459 CAATTTTAGTACCTAGTCTCAATGCTG 58.393 37.037 0.00 0.00 0.00 4.41
5930 8699 6.852420 TTTAGTACCTAGTCTCAATGCTGT 57.148 37.500 0.00 0.00 0.00 4.40
5931 8700 4.727507 AGTACCTAGTCTCAATGCTGTG 57.272 45.455 0.00 0.00 0.00 3.66
5944 9996 4.276678 TCAATGCTGTGAAAAAGAGGACAG 59.723 41.667 0.00 0.00 39.09 3.51
5955 10008 2.166907 AGAGGACAGTGGTATCCCAG 57.833 55.000 0.00 0.00 42.94 4.45
5986 10039 4.128643 CTCGGAACTATCTCCTACGTTCT 58.871 47.826 0.00 0.00 36.78 3.01
5987 10040 4.521146 TCGGAACTATCTCCTACGTTCTT 58.479 43.478 0.00 0.00 36.78 2.52
5988 10041 4.946157 TCGGAACTATCTCCTACGTTCTTT 59.054 41.667 0.00 0.00 36.78 2.52
5989 10042 5.065731 TCGGAACTATCTCCTACGTTCTTTC 59.934 44.000 0.00 0.00 36.78 2.62
5991 10044 6.259608 CGGAACTATCTCCTACGTTCTTTCTA 59.740 42.308 0.00 0.00 36.78 2.10
5992 10045 7.201679 CGGAACTATCTCCTACGTTCTTTCTAA 60.202 40.741 0.00 0.00 36.78 2.10
6022 10078 8.978874 ACAAGATTATAATAGCATCAACCACA 57.021 30.769 0.00 0.00 0.00 4.17
6023 10079 9.578576 ACAAGATTATAATAGCATCAACCACAT 57.421 29.630 0.00 0.00 0.00 3.21
6024 10080 9.836076 CAAGATTATAATAGCATCAACCACATG 57.164 33.333 0.00 0.00 0.00 3.21
6025 10081 9.797642 AAGATTATAATAGCATCAACCACATGA 57.202 29.630 0.00 0.00 0.00 3.07
6026 10082 9.224267 AGATTATAATAGCATCAACCACATGAC 57.776 33.333 0.00 0.00 30.82 3.06
6027 10083 8.922931 ATTATAATAGCATCAACCACATGACA 57.077 30.769 0.00 0.00 30.82 3.58
6028 10084 4.970662 AATAGCATCAACCACATGACAC 57.029 40.909 0.00 0.00 30.82 3.67
6029 10085 2.275134 AGCATCAACCACATGACACA 57.725 45.000 0.00 0.00 30.82 3.72
6030 10086 2.799017 AGCATCAACCACATGACACAT 58.201 42.857 0.00 0.00 30.82 3.21
6031 10087 2.490509 AGCATCAACCACATGACACATG 59.509 45.455 0.00 9.72 30.82 3.21
6032 10088 2.229543 GCATCAACCACATGACACATGT 59.770 45.455 10.94 10.94 30.82 3.21
6033 10089 3.828786 CATCAACCACATGACACATGTG 58.171 45.455 27.39 27.39 46.49 3.21
6039 10095 3.476295 CACATGACACATGTGGTAAGC 57.524 47.619 28.64 13.03 44.04 3.09
6040 10096 2.813172 CACATGACACATGTGGTAAGCA 59.187 45.455 28.64 17.63 44.04 3.91
6041 10097 3.252944 CACATGACACATGTGGTAAGCAA 59.747 43.478 28.64 7.21 44.04 3.91
6042 10098 4.081406 ACATGACACATGTGGTAAGCAAT 58.919 39.130 28.64 5.90 34.19 3.56
6043 10099 4.523943 ACATGACACATGTGGTAAGCAATT 59.476 37.500 28.64 5.13 34.19 2.32
6044 10100 5.010922 ACATGACACATGTGGTAAGCAATTT 59.989 36.000 28.64 4.36 34.19 1.82
6045 10101 4.869215 TGACACATGTGGTAAGCAATTTG 58.131 39.130 28.64 0.10 34.19 2.32
6046 10102 4.582240 TGACACATGTGGTAAGCAATTTGA 59.418 37.500 28.64 0.00 34.19 2.69
6047 10103 5.068329 TGACACATGTGGTAAGCAATTTGAA 59.932 36.000 28.64 0.00 34.19 2.69
6048 10104 5.288804 ACACATGTGGTAAGCAATTTGAAC 58.711 37.500 28.64 0.00 34.19 3.18
6049 10105 5.068987 ACACATGTGGTAAGCAATTTGAACT 59.931 36.000 28.64 0.00 34.19 3.01
6050 10106 6.264292 ACACATGTGGTAAGCAATTTGAACTA 59.736 34.615 28.64 0.00 34.19 2.24
6051 10107 7.039784 ACACATGTGGTAAGCAATTTGAACTAT 60.040 33.333 28.64 0.00 34.19 2.12
6052 10108 7.814107 CACATGTGGTAAGCAATTTGAACTATT 59.186 33.333 18.51 0.00 0.00 1.73
6053 10109 8.028938 ACATGTGGTAAGCAATTTGAACTATTC 58.971 33.333 0.00 0.00 0.00 1.75
6054 10110 7.517614 TGTGGTAAGCAATTTGAACTATTCA 57.482 32.000 0.00 0.00 38.04 2.57
6122 10179 4.922206 TGCTCATATCTGTGAAAAGGGTT 58.078 39.130 0.00 0.00 0.00 4.11
6127 10184 5.705441 TCATATCTGTGAAAAGGGTTGACAC 59.295 40.000 0.00 0.00 0.00 3.67
6165 10222 6.504398 ACCGAAACAATTTTTCTTCTTCTCC 58.496 36.000 9.74 0.00 0.00 3.71
6170 10227 8.707938 AAACAATTTTTCTTCTTCTCCAACAG 57.292 30.769 0.00 0.00 0.00 3.16
6175 10232 4.908601 TTCTTCTTCTCCAACAGGCATA 57.091 40.909 0.00 0.00 0.00 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.591750 ACGTGGGAGATATTATTCCTACTG 57.408 41.667 12.95 10.13 41.33 2.74
38 39 1.004918 CATCGGGCGGGGATAGAAC 60.005 63.158 0.00 0.00 0.00 3.01
78 79 1.278238 GAGATAAACCTCCACACGCG 58.722 55.000 3.53 3.53 0.00 6.01
101 102 2.071844 GACCGAATCCGCGAGATCCA 62.072 60.000 8.23 0.00 32.47 3.41
104 105 2.331805 CGACCGAATCCGCGAGAT 59.668 61.111 8.23 5.89 36.48 2.75
109 110 4.814294 AGCACCGACCGAATCCGC 62.814 66.667 0.00 0.00 0.00 5.54
111 112 2.511600 CCAGCACCGACCGAATCC 60.512 66.667 0.00 0.00 0.00 3.01
116 117 2.432628 GAAGACCAGCACCGACCG 60.433 66.667 0.00 0.00 0.00 4.79
119 120 1.215382 CATCGAAGACCAGCACCGA 59.785 57.895 0.00 0.00 42.51 4.69
133 134 4.819769 ACCAAATCCAAACAAATCCATCG 58.180 39.130 0.00 0.00 0.00 3.84
141 142 3.316868 GGACGAAGACCAAATCCAAACAA 59.683 43.478 0.00 0.00 43.12 2.83
151 152 1.137479 ACAAAGACGGACGAAGACCAA 59.863 47.619 0.00 0.00 44.03 3.67
152 153 0.748450 ACAAAGACGGACGAAGACCA 59.252 50.000 0.00 0.00 44.03 4.02
161 162 7.211573 TCTATAAACACTCAAACAAAGACGGA 58.788 34.615 0.00 0.00 0.00 4.69
169 170 9.739276 AGGATCAAATCTATAAACACTCAAACA 57.261 29.630 0.00 0.00 0.00 2.83
197 198 5.626543 GCCGAATAATAACGTCGTAGATCAA 59.373 40.000 0.00 0.00 40.67 2.57
199 200 4.259275 CGCCGAATAATAACGTCGTAGATC 59.741 45.833 0.00 0.00 40.67 2.75
200 201 4.083855 TCGCCGAATAATAACGTCGTAGAT 60.084 41.667 0.00 0.00 40.67 1.98
202 203 3.544651 TCGCCGAATAATAACGTCGTAG 58.455 45.455 0.00 0.00 32.98 3.51
209 210 4.670621 CAGCAAACATCGCCGAATAATAAC 59.329 41.667 0.00 0.00 0.00 1.89
215 216 1.137404 GCAGCAAACATCGCCGAAT 59.863 52.632 0.00 0.00 0.00 3.34
219 220 1.136147 CAGAGCAGCAAACATCGCC 59.864 57.895 0.00 0.00 0.00 5.54
224 225 2.545596 CGCACCAGAGCAGCAAACA 61.546 57.895 0.00 0.00 0.00 2.83
247 248 0.462225 TCGGAAAGTTGTTGTGCGGA 60.462 50.000 0.00 0.00 0.00 5.54
254 255 4.667519 AGTAGACAGTCGGAAAGTTGTT 57.332 40.909 0.00 0.00 0.00 2.83
257 258 5.068198 TGTTGTAGTAGACAGTCGGAAAGTT 59.932 40.000 0.00 0.00 39.88 2.66
262 263 3.504906 CCTTGTTGTAGTAGACAGTCGGA 59.495 47.826 0.00 0.00 39.88 4.55
265 266 7.254692 GGAAAAACCTTGTTGTAGTAGACAGTC 60.255 40.741 0.00 0.00 36.01 3.51
266 267 6.541278 GGAAAAACCTTGTTGTAGTAGACAGT 59.459 38.462 0.00 0.00 36.01 3.55
267 268 6.292703 CGGAAAAACCTTGTTGTAGTAGACAG 60.293 42.308 0.00 0.00 36.47 3.51
268 269 5.524646 CGGAAAAACCTTGTTGTAGTAGACA 59.475 40.000 0.00 0.00 34.34 3.41
269 270 5.049886 CCGGAAAAACCTTGTTGTAGTAGAC 60.050 44.000 0.00 0.00 36.31 2.59
270 271 5.058490 CCGGAAAAACCTTGTTGTAGTAGA 58.942 41.667 0.00 0.00 36.31 2.59
271 272 4.319984 GCCGGAAAAACCTTGTTGTAGTAG 60.320 45.833 5.05 0.00 36.31 2.57
272 273 3.565063 GCCGGAAAAACCTTGTTGTAGTA 59.435 43.478 5.05 0.00 36.31 1.82
299 300 3.933722 CATCGCCTCCTCCGCCAT 61.934 66.667 0.00 0.00 0.00 4.40
305 306 4.933064 CGCCGTCATCGCCTCCTC 62.933 72.222 0.00 0.00 35.54 3.71
338 339 2.604855 CGACGACTACAAGCACTGAAGT 60.605 50.000 0.00 0.00 0.00 3.01
344 345 1.912110 CTTAGCGACGACTACAAGCAC 59.088 52.381 0.00 0.00 0.00 4.40
350 351 1.202121 GGACCACTTAGCGACGACTAC 60.202 57.143 0.00 0.00 0.00 2.73
404 405 7.861629 TCCTCTTCAATCATGGTAGTACAAAT 58.138 34.615 2.06 0.00 0.00 2.32
413 414 4.414846 AGCCTATTCCTCTTCAATCATGGT 59.585 41.667 0.00 0.00 0.00 3.55
415 416 5.618236 TCAGCCTATTCCTCTTCAATCATG 58.382 41.667 0.00 0.00 0.00 3.07
427 428 4.254492 ACGAGAAACTTTCAGCCTATTCC 58.746 43.478 4.34 0.00 0.00 3.01
591 598 1.886542 ACGCCAAATTTCTTGTCCTCC 59.113 47.619 0.00 0.00 0.00 4.30
666 674 8.873215 TTTTTCGGTTGCTTATGATTTTGTTA 57.127 26.923 0.00 0.00 0.00 2.41
677 686 3.058777 GGTGACGATTTTTCGGTTGCTTA 60.059 43.478 0.00 0.00 37.45 3.09
679 688 1.265905 GGTGACGATTTTTCGGTTGCT 59.734 47.619 0.00 0.00 37.45 3.91
694 703 4.328667 CGATTTTTAATCGAACGGGTGAC 58.671 43.478 14.74 0.00 43.59 3.67
765 774 0.106719 AGCGAGGAAGAGAGGGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
766 775 0.395036 CAGCGAGGAAGAGAGGGAGA 60.395 60.000 0.00 0.00 0.00 3.71
767 776 2.015227 GCAGCGAGGAAGAGAGGGAG 62.015 65.000 0.00 0.00 0.00 4.30
768 777 2.055042 GCAGCGAGGAAGAGAGGGA 61.055 63.158 0.00 0.00 0.00 4.20
769 778 2.498726 GCAGCGAGGAAGAGAGGG 59.501 66.667 0.00 0.00 0.00 4.30
770 779 2.015227 GAGGCAGCGAGGAAGAGAGG 62.015 65.000 0.00 0.00 0.00 3.69
771 780 1.318886 TGAGGCAGCGAGGAAGAGAG 61.319 60.000 0.00 0.00 0.00 3.20
772 781 1.304464 TGAGGCAGCGAGGAAGAGA 60.304 57.895 0.00 0.00 0.00 3.10
777 786 2.659016 CAACTGAGGCAGCGAGGA 59.341 61.111 0.00 0.00 34.37 3.71
813 830 3.076785 AGGAGGGAGAAGAAGAAGAGACA 59.923 47.826 0.00 0.00 0.00 3.41
814 831 3.699538 GAGGAGGGAGAAGAAGAAGAGAC 59.300 52.174 0.00 0.00 0.00 3.36
815 832 3.309556 GGAGGAGGGAGAAGAAGAAGAGA 60.310 52.174 0.00 0.00 0.00 3.10
816 833 3.031013 GGAGGAGGGAGAAGAAGAAGAG 58.969 54.545 0.00 0.00 0.00 2.85
817 834 2.621929 CGGAGGAGGGAGAAGAAGAAGA 60.622 54.545 0.00 0.00 0.00 2.87
818 835 1.754226 CGGAGGAGGGAGAAGAAGAAG 59.246 57.143 0.00 0.00 0.00 2.85
819 836 1.853963 CGGAGGAGGGAGAAGAAGAA 58.146 55.000 0.00 0.00 0.00 2.52
1181 1243 3.378911 TCCAATATCTCGCGTGCAATA 57.621 42.857 5.77 0.00 0.00 1.90
1233 1295 1.745489 GCCCGCGTCCTTTCAATCT 60.745 57.895 4.92 0.00 0.00 2.40
1248 1310 1.006220 CCCAAAGCAAGAAACGCCC 60.006 57.895 0.00 0.00 0.00 6.13
1266 1328 3.502979 TGAGGCCGTAACAAACCAATAAC 59.497 43.478 0.00 0.00 0.00 1.89
1404 1466 7.987649 ACAAACTCCGTTGTCACTTAATAAAA 58.012 30.769 0.00 0.00 37.10 1.52
1476 1538 1.652124 GCATGCTCAAGCGAAAACATG 59.348 47.619 11.37 7.44 45.83 3.21
1549 1613 3.009584 TGGCATACATCAACCCACTAACA 59.990 43.478 0.00 0.00 0.00 2.41
1556 1620 4.096382 CACTAACTTGGCATACATCAACCC 59.904 45.833 0.00 0.00 0.00 4.11
1603 1667 9.575783 TTAGTTGAAAGTTGAAACATTGTAACC 57.424 29.630 0.00 0.00 0.00 2.85
1634 1698 9.981114 AAATTGTTTGACCTGGAAAAATACTAG 57.019 29.630 0.00 0.00 0.00 2.57
1913 1978 3.777106 ATGAACAGGCTGTCAGAAGAA 57.223 42.857 22.31 2.12 0.00 2.52
2011 2076 4.160065 CCAACTATGGTGCCATGAAAATGA 59.840 41.667 13.57 0.00 42.18 2.57
2099 2165 7.124750 AATGAACCCATATTCCTCAAAAAGGAG 59.875 37.037 0.00 0.00 42.85 3.69
2350 2416 4.527038 TGTTCCACAAGGTTACCAAACAAA 59.473 37.500 3.51 0.00 37.34 2.83
2438 2504 3.129813 ACCTTTCCGAAGAAACCAACAAC 59.870 43.478 0.00 0.00 37.07 3.32
2466 2532 3.002791 TCTCTTGAATTTAGCACAGCGG 58.997 45.455 0.00 0.00 0.00 5.52
2969 3036 6.532657 GGAGTGGAATGCATTTCATTGTTAAG 59.467 38.462 23.10 0.00 44.95 1.85
2972 3039 4.529377 AGGAGTGGAATGCATTTCATTGTT 59.471 37.500 23.10 9.73 44.95 2.83
2973 3040 4.091549 AGGAGTGGAATGCATTTCATTGT 58.908 39.130 23.10 11.27 44.95 2.71
3024 3091 7.552687 AGTGTTTCTTACAATGACAAGTTCTCA 59.447 33.333 0.00 0.00 38.80 3.27
3081 3150 4.832266 TGAGGCATAACAGTTGGTCAAAAT 59.168 37.500 0.00 0.00 0.00 1.82
3248 3317 7.069455 TGTCATCTCCCGAAGTCTTCATAAATA 59.931 37.037 12.99 0.00 0.00 1.40
3282 3351 8.877864 ATAAGATAACAAGATCCACCAAACAA 57.122 30.769 0.00 0.00 0.00 2.83
3546 3615 5.998454 GCATCTTGTGAGTATGCTAATGT 57.002 39.130 0.00 0.00 42.15 2.71
3653 3722 8.212995 TCCAATAGATCAGCACAAATAGATTCA 58.787 33.333 0.00 0.00 0.00 2.57
3789 3858 9.295825 GGGTTTTCCTTTAAATGGATGAAAAAT 57.704 29.630 7.08 0.00 40.46 1.82
4018 4089 6.432107 GTTGAAATTTAGAAACACGGTAGCA 58.568 36.000 0.00 0.00 0.00 3.49
4470 4542 5.045651 TCTCACAATGGAAGCAAGGAAGATA 60.046 40.000 0.00 0.00 0.00 1.98
4497 4569 7.417116 CGAAGGGTAATTTGTAGCTAAGGTCTA 60.417 40.741 0.00 0.00 0.00 2.59
4739 4811 2.029728 GCCGAAATGAGAGACGTCATTG 59.970 50.000 19.50 0.00 44.72 2.82
4949 5021 5.189659 ACTCTAGTATGGAAGTCGAATGC 57.810 43.478 0.00 0.00 0.00 3.56
5156 5229 3.476552 GTCTGTTGGGATGTTGAACTGA 58.523 45.455 0.00 0.00 0.00 3.41
5412 5486 5.698545 AGTCAAAGATGTAACAGCAACTCTC 59.301 40.000 0.00 0.00 0.00 3.20
5680 5761 3.368531 CGGACCGAAGAGGAAAAATCTCT 60.369 47.826 8.64 0.00 45.00 3.10
5706 5788 1.148273 GTCCTGCACCACCACTCAA 59.852 57.895 0.00 0.00 0.00 3.02
5842 7294 5.869888 ACTTTATATATACTTGAGCGCTGGC 59.130 40.000 18.48 0.38 40.37 4.85
5843 7295 8.244802 AGTACTTTATATATACTTGAGCGCTGG 58.755 37.037 18.48 7.44 0.00 4.85
5863 7315 9.406113 CCCTGTAGTTATACACTTCTAGTACTT 57.594 37.037 0.00 0.00 36.98 2.24
5864 7316 8.555729 ACCCTGTAGTTATACACTTCTAGTACT 58.444 37.037 0.00 0.00 36.98 2.73
5865 7317 8.744568 ACCCTGTAGTTATACACTTCTAGTAC 57.255 38.462 0.00 0.00 36.98 2.73
5867 7319 9.352191 CATACCCTGTAGTTATACACTTCTAGT 57.648 37.037 0.00 0.00 36.98 2.57
5868 7320 9.570468 TCATACCCTGTAGTTATACACTTCTAG 57.430 37.037 0.00 0.00 36.98 2.43
5869 7321 9.925545 TTCATACCCTGTAGTTATACACTTCTA 57.074 33.333 0.00 0.00 36.98 2.10
5870 7322 8.834004 TTCATACCCTGTAGTTATACACTTCT 57.166 34.615 0.00 0.00 36.98 2.85
5871 7323 9.880157 TTTTCATACCCTGTAGTTATACACTTC 57.120 33.333 0.00 0.00 36.98 3.01
5897 7349 8.877195 TGAGACTAGGTACTAAAATTGTCCTTT 58.123 33.333 0.00 0.00 42.17 3.11
5898 7350 8.431910 TGAGACTAGGTACTAAAATTGTCCTT 57.568 34.615 0.00 0.00 42.17 3.36
5900 7352 9.099454 CATTGAGACTAGGTACTAAAATTGTCC 57.901 37.037 0.00 0.00 42.17 4.02
5902 7354 8.322091 AGCATTGAGACTAGGTACTAAAATTGT 58.678 33.333 0.00 0.00 42.17 2.71
5908 8677 5.949952 TCACAGCATTGAGACTAGGTACTAA 59.050 40.000 0.00 0.00 42.17 2.24
5911 8680 4.720649 TCACAGCATTGAGACTAGGTAC 57.279 45.455 0.00 0.00 0.00 3.34
5916 8685 5.702670 CCTCTTTTTCACAGCATTGAGACTA 59.297 40.000 0.00 0.00 0.00 2.59
5918 8687 4.516698 TCCTCTTTTTCACAGCATTGAGAC 59.483 41.667 0.00 0.00 0.00 3.36
5919 8688 4.516698 GTCCTCTTTTTCACAGCATTGAGA 59.483 41.667 0.00 0.00 0.00 3.27
5921 8690 4.206375 TGTCCTCTTTTTCACAGCATTGA 58.794 39.130 0.00 0.00 0.00 2.57
5928 8697 3.644966 ACCACTGTCCTCTTTTTCACA 57.355 42.857 0.00 0.00 0.00 3.58
5929 8698 4.695928 GGATACCACTGTCCTCTTTTTCAC 59.304 45.833 0.00 0.00 0.00 3.18
5930 8699 4.906618 GGATACCACTGTCCTCTTTTTCA 58.093 43.478 0.00 0.00 0.00 2.69
5955 10008 0.470268 ATAGTTCCGAGAGAGGGGGC 60.470 60.000 0.00 0.00 0.00 5.80
5968 10021 7.644945 GCTTAGAAAGAACGTAGGAGATAGTTC 59.355 40.741 0.00 0.00 42.17 3.01
6019 10075 2.813172 TGCTTACCACATGTGTCATGTG 59.187 45.455 26.20 26.20 46.49 3.21
6020 10076 3.138884 TGCTTACCACATGTGTCATGT 57.861 42.857 23.79 16.29 0.00 3.21
6021 10077 4.707030 ATTGCTTACCACATGTGTCATG 57.293 40.909 23.79 11.29 0.00 3.07
6022 10078 5.243507 TCAAATTGCTTACCACATGTGTCAT 59.756 36.000 23.79 11.74 0.00 3.06
6023 10079 4.582240 TCAAATTGCTTACCACATGTGTCA 59.418 37.500 23.79 8.71 0.00 3.58
6024 10080 5.119931 TCAAATTGCTTACCACATGTGTC 57.880 39.130 23.79 8.37 0.00 3.67
6025 10081 5.068987 AGTTCAAATTGCTTACCACATGTGT 59.931 36.000 23.79 14.29 0.00 3.72
6026 10082 5.531634 AGTTCAAATTGCTTACCACATGTG 58.468 37.500 19.31 19.31 0.00 3.21
6027 10083 5.789643 AGTTCAAATTGCTTACCACATGT 57.210 34.783 0.00 0.00 0.00 3.21
6028 10084 8.028354 TGAATAGTTCAAATTGCTTACCACATG 58.972 33.333 0.00 0.00 36.59 3.21
6029 10085 8.121305 TGAATAGTTCAAATTGCTTACCACAT 57.879 30.769 0.00 0.00 36.59 3.21
6030 10086 7.517614 TGAATAGTTCAAATTGCTTACCACA 57.482 32.000 0.00 0.00 36.59 4.17
6122 10179 4.023107 TCGGTTTTGTTGTTGAAAGTGTCA 60.023 37.500 0.00 0.00 0.00 3.58
6127 10184 5.830900 TGTTTCGGTTTTGTTGTTGAAAG 57.169 34.783 0.00 0.00 0.00 2.62
6165 10222 2.162208 ACGCTCATTTGTATGCCTGTTG 59.838 45.455 0.00 0.00 0.00 3.33
6170 10227 2.874701 AGATGACGCTCATTTGTATGCC 59.125 45.455 2.70 0.00 37.20 4.40
6175 10232 7.041721 TCTAATACAAGATGACGCTCATTTGT 58.958 34.615 19.12 19.12 37.20 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.