Multiple sequence alignment - TraesCS5D01G098000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G098000 chr5D 100.000 4236 0 0 1 4236 108540960 108536725 0.000000e+00 7823.0
1 TraesCS5D01G098000 chr5D 95.817 2080 62 14 1 2073 542112393 542114454 0.000000e+00 3336.0
2 TraesCS5D01G098000 chr5D 95.628 732 29 3 2104 2833 542114409 542115139 0.000000e+00 1171.0
3 TraesCS5D01G098000 chr4A 95.450 1846 63 6 1211 3053 95156962 95158789 0.000000e+00 2924.0
4 TraesCS5D01G098000 chr4B 95.290 1847 65 7 1211 3053 429598654 429600482 0.000000e+00 2909.0
5 TraesCS5D01G098000 chr4B 94.087 389 20 1 2665 3053 91124370 91123985 4.720000e-164 588.0
6 TraesCS5D01G098000 chr4B 89.455 275 23 5 469 741 91126582 91126312 4.060000e-90 342.0
7 TraesCS5D01G098000 chr4B 98.148 54 1 0 763 816 91125993 91125940 1.250000e-15 95.3
8 TraesCS5D01G098000 chr3A 95.287 1846 66 6 1211 3053 363953048 363954875 0.000000e+00 2907.0
9 TraesCS5D01G098000 chr3A 94.683 489 26 0 140 628 424726946 424727434 0.000000e+00 760.0
10 TraesCS5D01G098000 chr3A 95.333 450 17 3 819 1264 424727443 424727892 0.000000e+00 712.0
11 TraesCS5D01G098000 chr7A 95.655 1726 57 4 1329 3053 238536843 238535135 0.000000e+00 2756.0
12 TraesCS5D01G098000 chr7A 92.188 64 5 0 3609 3672 115332983 115333046 1.620000e-14 91.6
13 TraesCS5D01G098000 chr3B 94.458 1678 56 6 1377 3053 787250424 787248783 0.000000e+00 2549.0
14 TraesCS5D01G098000 chr3B 95.213 752 31 3 641 1388 480335688 480334938 0.000000e+00 1184.0
15 TraesCS5D01G098000 chr3B 83.710 442 42 17 103 529 480336226 480335800 1.430000e-104 390.0
16 TraesCS5D01G098000 chr3B 98.148 54 1 0 763 816 810404998 810404945 1.250000e-15 95.3
17 TraesCS5D01G098000 chrUn 95.776 1539 49 3 1516 3053 391237669 391236146 0.000000e+00 2468.0
18 TraesCS5D01G098000 chr5B 97.082 1371 34 3 1085 2452 508619486 508620853 0.000000e+00 2305.0
19 TraesCS5D01G098000 chr5B 93.373 996 52 7 111 1095 508618540 508619532 0.000000e+00 1461.0
20 TraesCS5D01G098000 chr5B 98.639 147 2 0 2483 2629 508620854 508621000 1.170000e-65 261.0
21 TraesCS5D01G098000 chr5B 94.175 103 6 0 1 103 202864840 202864738 1.580000e-34 158.0
22 TraesCS5D01G098000 chr2A 95.858 1183 32 4 3055 4236 734901642 734902808 0.000000e+00 1897.0
23 TraesCS5D01G098000 chr2A 94.135 989 38 5 1211 2197 668080852 668081822 0.000000e+00 1487.0
24 TraesCS5D01G098000 chr2A 93.627 204 13 0 331 534 662939553 662939350 5.320000e-79 305.0
25 TraesCS5D01G098000 chr6B 94.338 989 36 5 1211 2197 21195377 21196347 0.000000e+00 1498.0
26 TraesCS5D01G098000 chr6B 95.333 450 17 3 819 1264 232742819 232743268 0.000000e+00 712.0
27 TraesCS5D01G098000 chr6B 96.703 273 6 3 2246 2516 232743372 232743643 6.460000e-123 451.0
28 TraesCS5D01G098000 chr6B 91.429 280 23 1 356 634 653303169 653303448 2.390000e-102 383.0
29 TraesCS5D01G098000 chr6B 88.849 278 23 5 468 741 21200826 21201099 6.790000e-88 335.0
30 TraesCS5D01G098000 chr6B 94.595 74 4 0 73 146 653302876 653302949 9.620000e-22 115.0
31 TraesCS5D01G098000 chr6B 96.296 54 2 0 763 816 21201423 21201476 5.830000e-14 89.8
32 TraesCS5D01G098000 chr7B 94.530 585 24 4 819 1398 707914125 707913544 0.000000e+00 896.0
33 TraesCS5D01G098000 chr7B 95.992 524 21 0 105 628 707914657 707914134 0.000000e+00 852.0
34 TraesCS5D01G098000 chr7B 94.373 391 17 2 2665 3053 465552813 465553200 2.820000e-166 595.0
35 TraesCS5D01G098000 chr7B 87.879 363 34 8 382 741 465550510 465550865 6.550000e-113 418.0
36 TraesCS5D01G098000 chr7B 93.333 75 5 0 73 147 707914743 707914669 1.250000e-20 111.0
37 TraesCS5D01G098000 chr7B 96.296 54 2 0 763 816 465551191 465551244 5.830000e-14 89.8
38 TraesCS5D01G098000 chr2B 94.539 586 23 4 819 1398 57497003 57497585 0.000000e+00 896.0
39 TraesCS5D01G098000 chr2B 94.539 586 23 4 819 1398 57498923 57499505 0.000000e+00 896.0
40 TraesCS5D01G098000 chr2B 95.229 524 25 0 105 628 57496471 57496994 0.000000e+00 830.0
41 TraesCS5D01G098000 chr2B 95.229 524 25 0 105 628 57498391 57498914 0.000000e+00 830.0
42 TraesCS5D01G098000 chr2B 87.692 130 16 0 106 235 103549956 103549827 7.340000e-33 152.0
43 TraesCS5D01G098000 chr7D 91.993 612 26 7 663 1260 529720572 529721174 0.000000e+00 837.0
44 TraesCS5D01G098000 chr7D 95.887 389 16 0 2665 3053 529731134 529731522 7.730000e-177 630.0
45 TraesCS5D01G098000 chr7D 86.788 439 37 11 97 529 529720040 529720463 1.780000e-128 470.0
46 TraesCS5D01G098000 chr7D 79.412 374 38 19 3441 3782 626577369 626577003 1.180000e-55 228.0
47 TraesCS5D01G098000 chr7D 93.333 75 5 0 73 147 529719528 529719602 1.250000e-20 111.0
48 TraesCS5D01G098000 chr6D 84.810 395 44 11 494 883 359523897 359524280 2.390000e-102 383.0
49 TraesCS5D01G098000 chr6A 96.296 54 2 0 763 816 568064351 568064298 5.830000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G098000 chr5D 108536725 108540960 4235 True 7823.000000 7823 100.000000 1 4236 1 chr5D.!!$R1 4235
1 TraesCS5D01G098000 chr5D 542112393 542115139 2746 False 2253.500000 3336 95.722500 1 2833 2 chr5D.!!$F1 2832
2 TraesCS5D01G098000 chr4A 95156962 95158789 1827 False 2924.000000 2924 95.450000 1211 3053 1 chr4A.!!$F1 1842
3 TraesCS5D01G098000 chr4B 429598654 429600482 1828 False 2909.000000 2909 95.290000 1211 3053 1 chr4B.!!$F1 1842
4 TraesCS5D01G098000 chr4B 91123985 91126582 2597 True 341.766667 588 93.896667 469 3053 3 chr4B.!!$R1 2584
5 TraesCS5D01G098000 chr3A 363953048 363954875 1827 False 2907.000000 2907 95.287000 1211 3053 1 chr3A.!!$F1 1842
6 TraesCS5D01G098000 chr3A 424726946 424727892 946 False 736.000000 760 95.008000 140 1264 2 chr3A.!!$F2 1124
7 TraesCS5D01G098000 chr7A 238535135 238536843 1708 True 2756.000000 2756 95.655000 1329 3053 1 chr7A.!!$R1 1724
8 TraesCS5D01G098000 chr3B 787248783 787250424 1641 True 2549.000000 2549 94.458000 1377 3053 1 chr3B.!!$R1 1676
9 TraesCS5D01G098000 chr3B 480334938 480336226 1288 True 787.000000 1184 89.461500 103 1388 2 chr3B.!!$R3 1285
10 TraesCS5D01G098000 chrUn 391236146 391237669 1523 True 2468.000000 2468 95.776000 1516 3053 1 chrUn.!!$R1 1537
11 TraesCS5D01G098000 chr5B 508618540 508621000 2460 False 1342.333333 2305 96.364667 111 2629 3 chr5B.!!$F1 2518
12 TraesCS5D01G098000 chr2A 734901642 734902808 1166 False 1897.000000 1897 95.858000 3055 4236 1 chr2A.!!$F2 1181
13 TraesCS5D01G098000 chr2A 668080852 668081822 970 False 1487.000000 1487 94.135000 1211 2197 1 chr2A.!!$F1 986
14 TraesCS5D01G098000 chr6B 21195377 21196347 970 False 1498.000000 1498 94.338000 1211 2197 1 chr6B.!!$F1 986
15 TraesCS5D01G098000 chr6B 232742819 232743643 824 False 581.500000 712 96.018000 819 2516 2 chr6B.!!$F3 1697
16 TraesCS5D01G098000 chr6B 653302876 653303448 572 False 249.000000 383 93.012000 73 634 2 chr6B.!!$F4 561
17 TraesCS5D01G098000 chr6B 21200826 21201476 650 False 212.400000 335 92.572500 468 816 2 chr6B.!!$F2 348
18 TraesCS5D01G098000 chr7B 707913544 707914743 1199 True 619.666667 896 94.618333 73 1398 3 chr7B.!!$R1 1325
19 TraesCS5D01G098000 chr7B 465550510 465553200 2690 False 367.600000 595 92.849333 382 3053 3 chr7B.!!$F1 2671
20 TraesCS5D01G098000 chr2B 57496471 57499505 3034 False 863.000000 896 94.884000 105 1398 4 chr2B.!!$F1 1293
21 TraesCS5D01G098000 chr7D 529719528 529721174 1646 False 472.666667 837 90.704667 73 1260 3 chr7D.!!$F2 1187

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 1366 1.402325 GGCGTGTTTTTATGTGCCCTC 60.402 52.381 0.00 0.00 36.51 4.30 F
1148 2360 1.613255 GCCGGAATTCTTGGTCCAGAA 60.613 52.381 5.05 6.31 37.20 3.02 F
2678 5554 1.739466 CTCTGTTGTGTGTGCACTTGT 59.261 47.619 19.41 0.00 45.44 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 3454 1.476488 GAACACAGGCACCACAAGTTT 59.524 47.619 0.0 0.0 0.00 2.66 R
3053 6031 0.604073 TCGTCCTTGTACGCCATGAA 59.396 50.000 0.0 0.0 42.56 2.57 R
3826 6805 0.182537 ACAGCTTGTGTGCCAACCTA 59.817 50.000 0.0 0.0 38.28 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 4.520846 GCGTCGGCCAGCGAATTG 62.521 66.667 18.51 0.00 0.00 2.32
69 70 3.864686 CGTCGGCCAGCGAATTGG 61.865 66.667 10.04 0.00 41.35 3.16
288 867 4.996434 GCGAGCCTGCACCTGTGT 62.996 66.667 0.00 0.00 34.15 3.72
352 931 1.506262 CGGATTTTTGCTCCCGTGG 59.494 57.895 0.00 0.00 37.40 4.94
422 1001 2.182030 GCTCCCGTGTCCTTCTCG 59.818 66.667 0.00 0.00 0.00 4.04
705 1348 4.841443 TGATCATGCTGTGAATATTGGC 57.159 40.909 0.00 0.00 40.97 4.52
723 1366 1.402325 GGCGTGTTTTTATGTGCCCTC 60.402 52.381 0.00 0.00 36.51 4.30
773 1721 5.011023 GCCTGATTATTAGGGGTTTCATTGG 59.989 44.000 5.17 0.00 35.80 3.16
942 2130 2.645838 TATTTGGGGCTGAGCTGATC 57.354 50.000 3.72 0.00 0.00 2.92
1148 2360 1.613255 GCCGGAATTCTTGGTCCAGAA 60.613 52.381 5.05 6.31 37.20 3.02
1297 2511 5.331876 ACTGAGCAGTAGGTTGTTATCTC 57.668 43.478 0.41 0.00 40.43 2.75
1446 2663 4.174009 GCGAAGTGTACTGATTGCTTAGA 58.826 43.478 0.00 0.00 0.00 2.10
1546 2763 7.173907 CCCTACTTTATTGTCCATGCTTCATAG 59.826 40.741 0.00 0.00 0.00 2.23
1697 2915 5.180492 ACACCACAAAATACATACAGTTCCG 59.820 40.000 0.00 0.00 0.00 4.30
1831 3049 7.201974 GGCCATACAGGTATCTGAAAGTAGTAA 60.202 40.741 10.76 0.00 43.49 2.24
1872 3090 3.314541 ACACGGTTCTCATTCTACCAC 57.685 47.619 0.00 0.00 32.12 4.16
1958 3176 6.035650 CCGATTATTATTTCTGTGACACACGT 59.964 38.462 3.56 0.00 37.14 4.49
2073 3341 3.248363 GGAAAATTTGCTGAACTTGTGGC 59.752 43.478 0.00 0.00 0.00 5.01
2138 3454 2.747446 GTCGAGGCTGGAAAATTTGCTA 59.253 45.455 0.00 0.00 0.00 3.49
2198 3514 2.280797 GGTGCTTGTGAGGCGTCA 60.281 61.111 4.68 4.68 0.00 4.35
2199 3515 2.320587 GGTGCTTGTGAGGCGTCAG 61.321 63.158 9.83 0.00 31.53 3.51
2678 5554 1.739466 CTCTGTTGTGTGTGCACTTGT 59.261 47.619 19.41 0.00 45.44 3.16
2691 5567 2.152016 GCACTTGTAGGTCCCAAAGAC 58.848 52.381 3.45 0.00 45.51 3.01
3038 6016 3.149196 TCTGAATCAGGTGTTTTGGAGC 58.851 45.455 10.71 0.00 31.51 4.70
3053 6031 1.285667 TGGAGCCATCACCAATGTCAT 59.714 47.619 0.00 0.00 33.13 3.06
3069 6047 2.027653 TGTCATTCATGGCGTACAAGGA 60.028 45.455 0.00 0.00 34.48 3.36
3096 6075 1.968747 GGAGTGGTCCCTTAGGGTACC 60.969 61.905 23.36 23.36 44.74 3.34
3118 6097 3.168528 ACGGGGTTGTGGAGCAGT 61.169 61.111 0.00 0.00 0.00 4.40
3125 6104 3.220999 TTGTGGAGCAGTCGACGGG 62.221 63.158 17.45 11.50 34.25 5.28
3128 6107 4.803426 GGAGCAGTCGACGGGCTG 62.803 72.222 32.62 17.97 38.15 4.85
3160 6139 1.144057 GATACCAGGGTCACCAGCG 59.856 63.158 0.00 0.00 40.13 5.18
3164 6143 4.624364 CAGGGTCACCAGCGTGCA 62.624 66.667 0.00 0.00 40.04 4.57
3232 6211 2.370189 AGGATTTAGGAGATCGGCTTGG 59.630 50.000 0.00 0.00 0.00 3.61
3259 6238 0.670546 CGTGGTGGGTGTGTCATCTC 60.671 60.000 0.00 0.00 0.00 2.75
3450 6429 9.092876 CCTATAATTTCTCAGTTGTCTGACTTC 57.907 37.037 9.51 2.37 44.58 3.01
3498 6477 9.658475 TGTAAGTGTGTTTAAAAGATTGATTCG 57.342 29.630 0.00 0.00 0.00 3.34
3600 6579 2.728007 GCTGGGAGCTATTTTCCAGTT 58.272 47.619 15.94 0.00 46.17 3.16
3624 6603 9.199982 GTTTGGCATATAATGAATTGATTGGAG 57.800 33.333 0.00 0.00 0.00 3.86
3656 6635 9.559958 CATGTTGTCTATTTTAACTCAATCCAC 57.440 33.333 0.00 0.00 0.00 4.02
3668 6647 3.008330 CTCAATCCACTGCTCTCTTTGG 58.992 50.000 0.00 0.00 0.00 3.28
3682 6661 8.218338 TGCTCTCTTTGGATTTCTTTATCATC 57.782 34.615 0.00 0.00 0.00 2.92
3687 6666 8.335532 TCTTTGGATTTCTTTATCATCGTTGT 57.664 30.769 0.00 0.00 0.00 3.32
3712 6691 3.538634 TGTTGCATCTGGATCTCTGAG 57.461 47.619 0.00 0.00 0.00 3.35
3717 6696 5.369409 TGCATCTGGATCTCTGAGAAAAT 57.631 39.130 12.00 0.00 0.00 1.82
3815 6794 1.546476 CTACTGTCCGAGGCTTCTTGT 59.454 52.381 0.00 0.00 0.00 3.16
3816 6795 0.034059 ACTGTCCGAGGCTTCTTGTG 59.966 55.000 0.00 0.00 0.00 3.33
3817 6796 0.034059 CTGTCCGAGGCTTCTTGTGT 59.966 55.000 0.00 0.00 0.00 3.72
3818 6797 0.033504 TGTCCGAGGCTTCTTGTGTC 59.966 55.000 0.00 0.00 0.00 3.67
3819 6798 0.670854 GTCCGAGGCTTCTTGTGTCC 60.671 60.000 0.00 0.00 0.00 4.02
3820 6799 1.376037 CCGAGGCTTCTTGTGTCCC 60.376 63.158 0.00 0.00 0.00 4.46
3821 6800 1.376037 CGAGGCTTCTTGTGTCCCC 60.376 63.158 0.00 0.00 0.00 4.81
3822 6801 1.831652 CGAGGCTTCTTGTGTCCCCT 61.832 60.000 0.00 0.00 0.00 4.79
3823 6802 0.402121 GAGGCTTCTTGTGTCCCCTT 59.598 55.000 0.00 0.00 0.00 3.95
3824 6803 0.402121 AGGCTTCTTGTGTCCCCTTC 59.598 55.000 0.00 0.00 0.00 3.46
3825 6804 0.402121 GGCTTCTTGTGTCCCCTTCT 59.598 55.000 0.00 0.00 0.00 2.85
3826 6805 1.202940 GGCTTCTTGTGTCCCCTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
3827 6806 2.039879 GGCTTCTTGTGTCCCCTTCTTA 59.960 50.000 0.00 0.00 0.00 2.10
3828 6807 3.339141 GCTTCTTGTGTCCCCTTCTTAG 58.661 50.000 0.00 0.00 0.00 2.18
3873 6852 1.943968 GCTACCGTTGCAATGAGGACA 60.944 52.381 20.36 8.35 0.00 4.02
3881 6860 2.497138 TGCAATGAGGACAGAACACAG 58.503 47.619 0.00 0.00 0.00 3.66
3906 6885 9.393786 AGGATATGGTAATAATTGGTACTGTCT 57.606 33.333 0.00 0.00 0.00 3.41
3913 6892 7.652507 GGTAATAATTGGTACTGTCTAGAGTGC 59.347 40.741 0.00 0.00 0.00 4.40
4066 7045 4.143618 GCTGCCACGAAATTAACGAAAAAG 60.144 41.667 11.00 5.54 34.70 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.388499 TCGTCCTTTGCTCCGGCC 62.388 66.667 0.00 0.00 37.74 6.13
317 896 2.171003 TCCGTCAGAGATTCAGAAGCA 58.829 47.619 0.31 0.00 0.00 3.91
352 931 5.862924 TTCCGTCAGAGATTCAAATCAAC 57.137 39.130 5.59 0.00 37.89 3.18
705 1348 1.727857 GCGAGGGCACATAAAAACACG 60.728 52.381 0.00 0.00 39.62 4.49
723 1366 5.164954 AGAAACTTGCTAAGACTTCTAGCG 58.835 41.667 5.67 0.00 39.53 4.26
773 1721 9.076596 GCATACAAATTTCTCCAATAGTTCAAC 57.923 33.333 0.00 0.00 0.00 3.18
942 2130 4.676196 GCAGGATAGCAAGTTCACAAATGG 60.676 45.833 0.00 0.00 0.00 3.16
1148 2360 1.299541 CGTTGGACTCACAGTGCTTT 58.700 50.000 0.00 0.00 37.46 3.51
1569 2787 1.954382 GTGCTCATGGATGCATGTCAT 59.046 47.619 24.37 5.02 41.45 3.06
1831 3049 6.313905 CGTGTAACTAAGAAATCTGGCTCAAT 59.686 38.462 0.00 0.00 31.75 2.57
1872 3090 2.046892 CTTGACAGCTGGGGTCCG 60.047 66.667 19.93 0.00 34.36 4.79
2042 3262 1.815003 AGCAAATTTTCCAGCCTCGAG 59.185 47.619 5.13 5.13 0.00 4.04
2073 3341 2.887783 AGCCCATGATCTCTAGTGTACG 59.112 50.000 0.00 0.00 0.00 3.67
2138 3454 1.476488 GAACACAGGCACCACAAGTTT 59.524 47.619 0.00 0.00 0.00 2.66
2198 3514 3.181469 TGAAAGAAGTAACACCAGTCGCT 60.181 43.478 0.00 0.00 0.00 4.93
2199 3515 3.128349 TGAAAGAAGTAACACCAGTCGC 58.872 45.455 0.00 0.00 0.00 5.19
2481 4265 2.814805 ACTATGCCAGCAACAATCCT 57.185 45.000 0.00 0.00 0.00 3.24
2678 5554 2.297698 TCAGACGTCTTTGGGACCTA 57.702 50.000 17.26 0.00 41.64 3.08
2812 5694 2.497107 AATGTTCACAGCAGCAACAC 57.503 45.000 0.00 0.00 32.96 3.32
2846 5728 4.216257 TGCTGAACTAAATTGACTTGCTCC 59.784 41.667 0.00 0.00 0.00 4.70
3015 5993 4.219288 GCTCCAAAACACCTGATTCAGAAT 59.781 41.667 15.36 0.00 32.44 2.40
3038 6016 3.491964 GCCATGAATGACATTGGTGATGG 60.492 47.826 5.14 11.77 40.21 3.51
3053 6031 0.604073 TCGTCCTTGTACGCCATGAA 59.396 50.000 0.00 0.00 42.56 2.57
3069 6047 1.064825 AAGGGACCACTCCAAATCGT 58.935 50.000 0.00 0.00 38.52 3.73
3118 6097 4.337060 CGTGTCACAGCCCGTCGA 62.337 66.667 3.42 0.00 0.00 4.20
3125 6104 3.181520 GGTATCAATTCACGTGTCACAGC 60.182 47.826 16.51 2.01 0.00 4.40
3128 6107 3.370978 CCTGGTATCAATTCACGTGTCAC 59.629 47.826 16.51 4.23 0.00 3.67
3164 6143 3.670377 GCTTTCTTTGCCGCGGGT 61.670 61.111 29.38 0.00 0.00 5.28
3196 6175 6.064060 CCTAAATCCTGATTGCCATAGTTGA 58.936 40.000 0.00 0.00 0.00 3.18
3232 6211 2.034879 CACCCACCACGCAGATCAC 61.035 63.158 0.00 0.00 0.00 3.06
3450 6429 7.887996 ACAATTGGCACATGTTTTGTAATAG 57.112 32.000 10.83 0.00 39.30 1.73
3498 6477 2.716217 AGCTTGGGTAAGATTCTGCAC 58.284 47.619 0.00 0.00 35.92 4.57
3551 6530 6.818644 GGTATCAGTTTTGATTCTACTCTGCA 59.181 38.462 0.00 0.00 41.24 4.41
3600 6579 7.015389 TGCTCCAATCAATTCATTATATGCCAA 59.985 33.333 0.00 0.00 0.00 4.52
3656 6635 7.621428 TGATAAAGAAATCCAAAGAGAGCAG 57.379 36.000 0.00 0.00 0.00 4.24
3682 6661 4.793071 TCCAGATGCAACAAAATACAACG 58.207 39.130 0.00 0.00 0.00 4.10
3687 6666 6.417258 TCAGAGATCCAGATGCAACAAAATA 58.583 36.000 0.00 0.00 0.00 1.40
3693 6672 3.815856 TCTCAGAGATCCAGATGCAAC 57.184 47.619 0.00 0.00 0.00 4.17
3821 6800 2.030805 GCTTGTGTGCCAACCTAAGAAG 60.031 50.000 0.00 0.00 0.00 2.85
3822 6801 1.953686 GCTTGTGTGCCAACCTAAGAA 59.046 47.619 0.00 0.00 0.00 2.52
3823 6802 1.142870 AGCTTGTGTGCCAACCTAAGA 59.857 47.619 0.00 0.00 0.00 2.10
3824 6803 1.267806 CAGCTTGTGTGCCAACCTAAG 59.732 52.381 0.00 0.00 0.00 2.18
3825 6804 1.317613 CAGCTTGTGTGCCAACCTAA 58.682 50.000 0.00 0.00 0.00 2.69
3826 6805 0.182537 ACAGCTTGTGTGCCAACCTA 59.817 50.000 0.00 0.00 38.28 3.08
3827 6806 0.182537 TACAGCTTGTGTGCCAACCT 59.817 50.000 0.00 0.00 40.69 3.50
3828 6807 1.028905 TTACAGCTTGTGTGCCAACC 58.971 50.000 0.00 0.00 40.69 3.77
3873 6852 8.502738 ACCAATTATTACCATATCCTGTGTTCT 58.497 33.333 0.00 0.00 0.00 3.01
3906 6885 6.296803 TCCATAGATTTACTCGAGCACTCTA 58.703 40.000 13.61 12.67 0.00 2.43
3988 6967 8.592809 ACAAATCAAACAAATCAGGCCTATTTA 58.407 29.630 3.98 0.00 0.00 1.40
4122 7101 6.318648 TCCTGTAGGATGCATAAATGACAAAC 59.681 38.462 0.00 0.00 39.78 2.93
4186 7165 6.127535 CCATTCATCTGCTGGATAACAAACTT 60.128 38.462 0.00 0.00 32.64 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.