Multiple sequence alignment - TraesCS5D01G097200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G097200 chr5D 100.000 9649 0 0 1 9649 107786672 107777024 0.000000e+00 17819
1 TraesCS5D01G097200 chr5D 99.167 120 1 0 9426 9545 391820061 391820180 5.870000e-52 217
2 TraesCS5D01G097200 chr5D 93.388 121 7 1 9426 9546 101762031 101761912 2.770000e-40 178
3 TraesCS5D01G097200 chr5A 96.957 6014 131 23 1 5983 110671405 110665413 0.000000e+00 10045
4 TraesCS5D01G097200 chr5A 97.605 3382 70 6 5982 9354 110665251 110661872 0.000000e+00 5786
5 TraesCS5D01G097200 chr5A 82.938 211 32 3 1878 2086 364680205 364679997 4.600000e-43 187
6 TraesCS5D01G097200 chr5A 92.500 120 7 2 9426 9544 495025309 495025427 4.630000e-38 171
7 TraesCS5D01G097200 chr5A 95.604 91 4 0 9327 9417 110661869 110661779 7.810000e-31 147
8 TraesCS5D01G097200 chr5A 90.476 105 9 1 6147 6251 25890692 25890589 4.700000e-28 137
9 TraesCS5D01G097200 chr5A 89.091 110 10 2 6140 6248 17837020 17836912 1.690000e-27 135
10 TraesCS5D01G097200 chr5B 95.678 5437 170 30 1 5407 117905801 117900400 0.000000e+00 8678
11 TraesCS5D01G097200 chr5B 95.389 3036 90 12 6245 9230 117899683 117896648 0.000000e+00 4785
12 TraesCS5D01G097200 chr5B 94.337 671 36 2 5480 6148 117900351 117899681 0.000000e+00 1027
13 TraesCS5D01G097200 chr5B 87.209 516 22 14 7935 8432 628595768 628595279 1.830000e-151 547
14 TraesCS5D01G097200 chr5B 87.016 516 23 11 7935 8432 625022556 625022067 8.520000e-150 542
15 TraesCS5D01G097200 chr5B 94.924 197 10 0 9221 9417 117892375 117892179 9.410000e-80 309
16 TraesCS5D01G097200 chr5B 84.475 219 28 4 1878 2094 313143288 313143074 2.730000e-50 211
17 TraesCS5D01G097200 chr5B 94.845 97 4 1 6147 6243 537533244 537533149 6.040000e-32 150
18 TraesCS5D01G097200 chr5B 89.524 105 9 2 6140 6243 698467293 698467190 2.190000e-26 132
19 TraesCS5D01G097200 chr2A 91.654 647 29 10 1263 1894 685528247 685528883 0.000000e+00 872
20 TraesCS5D01G097200 chr2A 92.607 257 15 1 946 1202 685527995 685528247 5.510000e-97 366
21 TraesCS5D01G097200 chr2A 80.465 215 35 7 1883 2093 68244122 68244333 3.610000e-34 158
22 TraesCS5D01G097200 chr6B 89.960 498 23 11 7935 8432 298437278 298436808 1.380000e-172 617
23 TraesCS5D01G097200 chr6B 79.630 216 40 4 1878 2092 717561973 717561761 1.680000e-32 152
24 TraesCS5D01G097200 chr6B 92.381 105 7 1 6144 6248 424084191 424084088 2.170000e-31 148
25 TraesCS5D01G097200 chr6B 92.381 105 7 1 6144 6248 424306889 424306786 2.170000e-31 148
26 TraesCS5D01G097200 chr7B 89.357 498 27 10 7935 8432 486458697 486458226 3.860000e-168 603
27 TraesCS5D01G097200 chr7B 94.262 122 6 1 9426 9547 481840549 481840669 1.650000e-42 185
28 TraesCS5D01G097200 chr1D 85.388 219 25 7 1878 2093 383758233 383758019 4.540000e-53 220
29 TraesCS5D01G097200 chr1D 91.346 104 7 2 6141 6243 420554645 420554543 3.630000e-29 141
30 TraesCS5D01G097200 chr6A 84.977 213 29 3 1878 2089 481744844 481744634 7.590000e-51 213
31 TraesCS5D01G097200 chr2D 97.561 123 3 0 9426 9548 76645015 76645137 2.730000e-50 211
32 TraesCS5D01G097200 chr1B 84.091 220 28 7 1878 2094 123953533 123953318 1.270000e-48 206
33 TraesCS5D01G097200 chr6D 98.246 114 1 1 9426 9539 75403426 75403314 2.130000e-46 198
34 TraesCS5D01G097200 chr6D 85.714 119 14 3 6141 6259 51972904 51972789 1.320000e-23 122
35 TraesCS5D01G097200 chr1A 95.122 123 5 1 9426 9547 585455497 585455619 9.890000e-45 193
36 TraesCS5D01G097200 chr4D 94.262 122 7 0 9426 9547 7905742 7905863 4.600000e-43 187
37 TraesCS5D01G097200 chr4A 94.068 118 7 0 9433 9550 595373137 595373020 7.700000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G097200 chr5D 107777024 107786672 9648 True 17819 17819 100.000000 1 9649 1 chr5D.!!$R2 9648
1 TraesCS5D01G097200 chr5A 110661779 110671405 9626 True 5326 10045 96.722000 1 9417 3 chr5A.!!$R4 9416
2 TraesCS5D01G097200 chr5B 117896648 117905801 9153 True 4830 8678 95.134667 1 9230 3 chr5B.!!$R7 9229
3 TraesCS5D01G097200 chr2A 685527995 685528883 888 False 619 872 92.130500 946 1894 2 chr2A.!!$F2 948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 663 1.065782 GCCTCTCCAACCTTCTCTTCC 60.066 57.143 0.00 0.0 0.00 3.46 F
1224 1236 2.536761 TTTGTAGTAGTGCTTGGCGT 57.463 45.000 0.00 0.0 0.00 5.68 F
1958 1989 2.649331 CAAGCCCTGCAATTTCTGAG 57.351 50.000 0.00 0.0 0.00 3.35 F
2905 2940 1.613255 GCTTGGGGTCCAAATTCTCGA 60.613 52.381 0.84 0.0 43.44 4.04 F
3985 4023 0.250640 CACCCAACTCAGAAGCAGCT 60.251 55.000 0.00 0.0 0.00 4.24 F
4618 4656 0.955905 GCGCCCACCTGAAAAAGTTA 59.044 50.000 0.00 0.0 0.00 2.24 F
5438 5477 1.151777 CGACGTGCCTCACAACAACT 61.152 55.000 0.00 0.0 33.40 3.16 F
6455 6710 2.469274 TGCAAGCTGAGGAAGAAGAG 57.531 50.000 0.00 0.0 0.00 2.85 F
7441 7696 2.180276 ACCATCTGAGGAAGCTAACGT 58.820 47.619 0.00 0.0 0.00 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 1997 0.881118 GCAAATCCGCCTCAGTTCAA 59.119 50.000 0.00 0.00 0.00 2.69 R
2905 2940 3.023949 GCCAGATGCTGAGGACGGT 62.024 63.158 0.00 0.00 36.87 4.83 R
3780 3818 3.126225 GCTGTGGCTGCTGAGCTC 61.126 66.667 6.82 6.82 45.44 4.09 R
4184 4222 0.259938 GGTTGATGAGGGCCTCCAAT 59.740 55.000 30.03 18.17 34.83 3.16 R
5419 5458 1.151777 AGTTGTTGTGAGGCACGTCG 61.152 55.000 0.00 0.00 37.14 5.12 R
6455 6710 0.660300 CCTTTTGTCGCTTTGTCCGC 60.660 55.000 0.00 0.00 0.00 5.54 R
7122 7377 0.322816 TTTGGCTCACTGGAGATGCC 60.323 55.000 0.00 0.00 44.26 4.40 R
7819 8074 0.236711 CTTGTCAGGTTCAAGCTGCG 59.763 55.000 11.99 0.00 43.02 5.18 R
9418 9729 0.111639 ACCACACATACCAACACCCC 59.888 55.000 0.00 0.00 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.203441 TGAGGCAATGCTCCCTGTCT 61.203 55.000 4.82 0.00 0.00 3.41
164 168 3.961849 TGCAGGTTTATCAGGTGCATTA 58.038 40.909 0.00 0.00 39.17 1.90
173 177 2.161855 TCAGGTGCATTAAGCCAAGTG 58.838 47.619 0.00 0.00 44.83 3.16
202 207 9.950680 ACAAGACACAAACAAATCAGTTATTAG 57.049 29.630 0.00 0.00 0.00 1.73
232 237 5.314923 AGCCAACATATTAGCAACACAAG 57.685 39.130 0.00 0.00 0.00 3.16
235 240 5.323900 CCAACATATTAGCAACACAAGACG 58.676 41.667 0.00 0.00 0.00 4.18
237 242 6.348132 CCAACATATTAGCAACACAAGACGAA 60.348 38.462 0.00 0.00 0.00 3.85
238 243 6.985188 ACATATTAGCAACACAAGACGAAT 57.015 33.333 0.00 0.00 0.00 3.34
251 256 5.115472 CACAAGACGAATTTAATGCACACAC 59.885 40.000 0.00 0.00 0.00 3.82
260 265 2.529780 AATGCACACACCCAACATTG 57.470 45.000 0.00 0.00 30.14 2.82
265 270 1.134877 CACACACCCAACATTGCAACA 60.135 47.619 0.00 0.00 0.00 3.33
273 281 3.937706 CCCAACATTGCAACACAAAGAAA 59.062 39.130 0.00 0.00 42.86 2.52
275 283 4.391216 CCAACATTGCAACACAAAGAAACA 59.609 37.500 0.00 0.00 42.86 2.83
317 325 2.494059 CGGCCCCAATTACTAGTGATG 58.506 52.381 5.39 1.58 0.00 3.07
347 355 1.618837 TCACGAGGGAGGACAAAAGAG 59.381 52.381 0.00 0.00 0.00 2.85
352 360 4.134563 CGAGGGAGGACAAAAGAGAAAAA 58.865 43.478 0.00 0.00 0.00 1.94
653 663 1.065782 GCCTCTCCAACCTTCTCTTCC 60.066 57.143 0.00 0.00 0.00 3.46
995 1005 3.452786 CGCAAGCTCGAGGGGAGA 61.453 66.667 15.58 0.00 46.23 3.71
1224 1236 2.536761 TTTGTAGTAGTGCTTGGCGT 57.463 45.000 0.00 0.00 0.00 5.68
1366 1378 4.323485 CCAGTTGTGTGGTATGGTATCTGT 60.323 45.833 0.00 0.00 32.32 3.41
1445 1457 8.848474 ACCGAGCAAATATGTATTTATAGCTT 57.152 30.769 0.00 0.00 34.57 3.74
1758 1787 5.731957 AAGCCCGTGTTTTATTGGTTAAT 57.268 34.783 0.00 0.00 0.00 1.40
1759 1788 6.837471 AAGCCCGTGTTTTATTGGTTAATA 57.163 33.333 0.00 0.00 0.00 0.98
1760 1789 6.837471 AGCCCGTGTTTTATTGGTTAATAA 57.163 33.333 0.00 0.00 37.06 1.40
1866 1897 4.576053 TCAGCCATAATCATTCGGAAACAG 59.424 41.667 0.00 0.00 0.00 3.16
1958 1989 2.649331 CAAGCCCTGCAATTTCTGAG 57.351 50.000 0.00 0.00 0.00 3.35
2036 2067 6.652481 CCTCGGAGAACATAATTTGCTATGAT 59.348 38.462 6.58 0.00 34.09 2.45
2223 2256 6.775594 TCATTTATCCTTCTGAGACTCGAA 57.224 37.500 0.00 4.11 0.00 3.71
2604 2639 6.348458 CCACACTCATTTGTTATACCACACTG 60.348 42.308 0.00 0.00 0.00 3.66
2643 2678 6.884280 TTCGAGATCTGATGCTACTCATTA 57.116 37.500 0.00 0.00 35.05 1.90
2644 2679 7.459795 TTCGAGATCTGATGCTACTCATTAT 57.540 36.000 0.00 0.00 35.05 1.28
2905 2940 1.613255 GCTTGGGGTCCAAATTCTCGA 60.613 52.381 0.84 0.00 43.44 4.04
3369 3407 7.730672 TGCCATATCTGCTAGATCTATTTCT 57.269 36.000 2.11 0.00 36.20 2.52
3387 3425 9.071276 TCTATTTCTGCAAATCTCAGTTCTTTT 57.929 29.630 0.00 0.00 33.95 2.27
3424 3462 9.558648 TCTGATTTCAAATTCAAATGACGTATG 57.441 29.630 0.00 0.00 0.00 2.39
3552 3590 2.696526 TGATACGGGGAAGAGCCTAT 57.303 50.000 0.00 0.00 36.66 2.57
3780 3818 0.967380 GCCACAGGTCCTCCAAATGG 60.967 60.000 0.00 0.00 36.18 3.16
3985 4023 0.250640 CACCCAACTCAGAAGCAGCT 60.251 55.000 0.00 0.00 0.00 4.24
4056 4094 7.647318 CGATGCATATCATTCTATGACTCCTAC 59.353 40.741 0.00 0.00 43.01 3.18
4089 4127 5.841957 ATGAATCAACCTGTTATTCCAGC 57.158 39.130 0.00 0.00 0.00 4.85
4153 4191 1.000843 GCTCCTCAACGGCCAAATTTT 59.999 47.619 2.24 0.00 0.00 1.82
4184 4222 5.357878 GCCAATGTAAGAGATTCACCATTCA 59.642 40.000 0.00 0.00 0.00 2.57
4618 4656 0.955905 GCGCCCACCTGAAAAAGTTA 59.044 50.000 0.00 0.00 0.00 2.24
5203 5241 2.440627 TGATGATATGCCAGCTTCACCT 59.559 45.455 0.00 0.00 0.00 4.00
5381 5420 6.633500 TTTCATGTAGCCAAACTATATGCC 57.367 37.500 4.99 0.00 45.39 4.40
5438 5477 1.151777 CGACGTGCCTCACAACAACT 61.152 55.000 0.00 0.00 33.40 3.16
5704 5771 5.435686 TGATACCCTGCACTAGTCAATTT 57.564 39.130 0.00 0.00 0.00 1.82
5917 5984 9.702494 TTTGTGTGTATTTTCATTATTGATGCA 57.298 25.926 0.00 0.00 35.64 3.96
5922 5989 9.369904 GTGTATTTTCATTATTGATGCAAGGTT 57.630 29.630 0.00 0.00 35.64 3.50
6144 6374 4.469945 ACTGCCTGCTTACCAGTCTTATTA 59.530 41.667 0.00 0.00 40.06 0.98
6243 6473 3.629142 ATTTTTAGGACGGAGGGAGTG 57.371 47.619 0.00 0.00 0.00 3.51
6455 6710 2.469274 TGCAAGCTGAGGAAGAAGAG 57.531 50.000 0.00 0.00 0.00 2.85
6509 6764 4.740334 GCAAAATTGGAGGAGCTGAACAAA 60.740 41.667 0.00 0.00 0.00 2.83
6716 6971 2.753043 CCTGCACAGCCCATGTCC 60.753 66.667 0.00 0.00 41.41 4.02
6729 6984 3.895656 GCCCATGTCCACTCTACTACATA 59.104 47.826 0.00 0.00 31.55 2.29
6737 6992 4.725304 TCCACTCTACTACATACTGAGGGA 59.275 45.833 0.00 0.00 30.38 4.20
7122 7377 2.768253 TGGTCAGCAGAATACACCAG 57.232 50.000 0.00 0.00 31.99 4.00
7247 7502 6.500049 TGGGTGGTATTTCATTTGGATCTTTT 59.500 34.615 0.00 0.00 0.00 2.27
7441 7696 2.180276 ACCATCTGAGGAAGCTAACGT 58.820 47.619 0.00 0.00 0.00 3.99
7819 8074 0.034670 AGGCCTTCTGACAAGCATCC 60.035 55.000 0.00 0.00 0.00 3.51
7901 8156 1.160137 CAGTTGAGTTACCTGCCAGC 58.840 55.000 0.00 0.00 0.00 4.85
8246 8507 5.833131 AGGTAAAGGTGACATGACAAATGTT 59.167 36.000 0.00 0.00 31.52 2.71
8354 8615 0.912486 GGTATCACAGGGGAAGCAGT 59.088 55.000 0.00 0.00 0.00 4.40
8419 8680 0.038343 GCAAATGCAGAAAGGCGGAA 60.038 50.000 0.00 0.00 41.59 4.30
8497 8758 1.002134 AGAACCCAAGTGCCGATGG 60.002 57.895 0.00 0.00 36.42 3.51
8633 8906 0.250081 CGGCTCCAGCTCCTAATTCC 60.250 60.000 0.00 0.00 41.70 3.01
8720 8993 4.925054 CACAACAGGTAGGCAAATGAAATG 59.075 41.667 0.00 0.00 0.00 2.32
8990 9266 4.081807 GGAGTTGATTAAGTACTGGGACGT 60.082 45.833 0.00 0.00 0.00 4.34
9037 9313 3.113322 GGGAACAGAAGCGTTGTTTTTC 58.887 45.455 5.27 0.00 38.78 2.29
9072 9352 5.553123 TGGTATTCGGTACATGAAAGTTGT 58.447 37.500 0.00 0.00 34.87 3.32
9249 9531 0.602638 TGCAGTTAACTGTCGCCTGG 60.603 55.000 30.90 8.89 45.45 4.45
9264 9546 1.338020 GCCTGGACCAACAAAAGAGTG 59.662 52.381 0.00 0.00 0.00 3.51
9266 9548 2.618709 CCTGGACCAACAAAAGAGTGTC 59.381 50.000 0.00 0.00 0.00 3.67
9273 9555 5.941788 ACCAACAAAAGAGTGTCTTCCTAT 58.058 37.500 0.00 0.00 35.27 2.57
9301 9583 1.303074 AGCATATGGCCGCTGGATG 60.303 57.895 4.56 0.37 46.50 3.51
9383 9694 2.481276 CGATGAAGCTGATTACGTGGGA 60.481 50.000 0.00 0.00 0.00 4.37
9426 9737 2.971901 AGGAAACTAAGGGGGTGTTG 57.028 50.000 0.00 0.00 40.61 3.33
9427 9738 1.427753 AGGAAACTAAGGGGGTGTTGG 59.572 52.381 0.00 0.00 40.61 3.77
9428 9739 1.146359 GGAAACTAAGGGGGTGTTGGT 59.854 52.381 0.00 0.00 0.00 3.67
9429 9740 2.376181 GGAAACTAAGGGGGTGTTGGTA 59.624 50.000 0.00 0.00 0.00 3.25
9430 9741 3.010920 GGAAACTAAGGGGGTGTTGGTAT 59.989 47.826 0.00 0.00 0.00 2.73
9431 9742 3.732048 AACTAAGGGGGTGTTGGTATG 57.268 47.619 0.00 0.00 0.00 2.39
9432 9743 2.639487 ACTAAGGGGGTGTTGGTATGT 58.361 47.619 0.00 0.00 0.00 2.29
9433 9744 2.307686 ACTAAGGGGGTGTTGGTATGTG 59.692 50.000 0.00 0.00 0.00 3.21
9434 9745 1.154430 AAGGGGGTGTTGGTATGTGT 58.846 50.000 0.00 0.00 0.00 3.72
9435 9746 0.404040 AGGGGGTGTTGGTATGTGTG 59.596 55.000 0.00 0.00 0.00 3.82
9436 9747 0.610785 GGGGGTGTTGGTATGTGTGG 60.611 60.000 0.00 0.00 0.00 4.17
9437 9748 0.111639 GGGGTGTTGGTATGTGTGGT 59.888 55.000 0.00 0.00 0.00 4.16
9438 9749 1.351683 GGGGTGTTGGTATGTGTGGTA 59.648 52.381 0.00 0.00 0.00 3.25
9439 9750 2.224818 GGGGTGTTGGTATGTGTGGTAA 60.225 50.000 0.00 0.00 0.00 2.85
9440 9751 3.078837 GGGTGTTGGTATGTGTGGTAAG 58.921 50.000 0.00 0.00 0.00 2.34
9441 9752 2.486592 GGTGTTGGTATGTGTGGTAAGC 59.513 50.000 0.00 0.00 0.00 3.09
9442 9753 3.142951 GTGTTGGTATGTGTGGTAAGCA 58.857 45.455 0.00 0.00 0.00 3.91
9443 9754 3.566322 GTGTTGGTATGTGTGGTAAGCAA 59.434 43.478 0.00 0.00 0.00 3.91
9444 9755 4.217550 GTGTTGGTATGTGTGGTAAGCAAT 59.782 41.667 0.00 0.00 32.61 3.56
9445 9756 4.830046 TGTTGGTATGTGTGGTAAGCAATT 59.170 37.500 0.00 0.00 32.61 2.32
9446 9757 5.303078 TGTTGGTATGTGTGGTAAGCAATTT 59.697 36.000 0.00 0.00 32.61 1.82
9447 9758 5.637006 TGGTATGTGTGGTAAGCAATTTC 57.363 39.130 0.00 0.00 0.00 2.17
9448 9759 5.073428 TGGTATGTGTGGTAAGCAATTTCA 58.927 37.500 0.00 0.00 0.00 2.69
9449 9760 5.714333 TGGTATGTGTGGTAAGCAATTTCAT 59.286 36.000 0.00 0.00 0.00 2.57
9450 9761 6.887002 TGGTATGTGTGGTAAGCAATTTCATA 59.113 34.615 0.00 0.00 0.00 2.15
9451 9762 7.559533 TGGTATGTGTGGTAAGCAATTTCATAT 59.440 33.333 0.00 0.00 0.00 1.78
9452 9763 8.413229 GGTATGTGTGGTAAGCAATTTCATATT 58.587 33.333 0.00 0.00 0.00 1.28
9453 9764 9.801873 GTATGTGTGGTAAGCAATTTCATATTT 57.198 29.630 0.00 0.00 0.00 1.40
9454 9765 8.706492 ATGTGTGGTAAGCAATTTCATATTTG 57.294 30.769 0.00 0.00 0.00 2.32
9455 9766 7.890515 TGTGTGGTAAGCAATTTCATATTTGA 58.109 30.769 0.00 0.00 0.00 2.69
9456 9767 8.363390 TGTGTGGTAAGCAATTTCATATTTGAA 58.637 29.630 0.00 0.00 40.09 2.69
9470 9781 8.920509 TTCATATTTGAAATGATGCTGTTGAG 57.079 30.769 0.00 0.00 38.90 3.02
9471 9782 8.058667 TCATATTTGAAATGATGCTGTTGAGT 57.941 30.769 0.00 0.00 0.00 3.41
9472 9783 8.525316 TCATATTTGAAATGATGCTGTTGAGTT 58.475 29.630 0.00 0.00 0.00 3.01
9473 9784 9.791820 CATATTTGAAATGATGCTGTTGAGTTA 57.208 29.630 0.00 0.00 0.00 2.24
9475 9786 8.697846 ATTTGAAATGATGCTGTTGAGTTATG 57.302 30.769 0.00 0.00 0.00 1.90
9476 9787 7.451501 TTGAAATGATGCTGTTGAGTTATGA 57.548 32.000 0.00 0.00 0.00 2.15
9477 9788 7.080353 TGAAATGATGCTGTTGAGTTATGAG 57.920 36.000 0.00 0.00 0.00 2.90
9478 9789 6.094464 TGAAATGATGCTGTTGAGTTATGAGG 59.906 38.462 0.00 0.00 0.00 3.86
9479 9790 3.273434 TGATGCTGTTGAGTTATGAGGC 58.727 45.455 0.00 0.00 0.00 4.70
9480 9791 3.054875 TGATGCTGTTGAGTTATGAGGCT 60.055 43.478 0.00 0.00 0.00 4.58
9481 9792 3.423539 TGCTGTTGAGTTATGAGGCTT 57.576 42.857 0.00 0.00 0.00 4.35
9482 9793 3.754965 TGCTGTTGAGTTATGAGGCTTT 58.245 40.909 0.00 0.00 0.00 3.51
9483 9794 4.905429 TGCTGTTGAGTTATGAGGCTTTA 58.095 39.130 0.00 0.00 0.00 1.85
9484 9795 5.500234 TGCTGTTGAGTTATGAGGCTTTAT 58.500 37.500 0.00 0.00 0.00 1.40
9485 9796 5.945784 TGCTGTTGAGTTATGAGGCTTTATT 59.054 36.000 0.00 0.00 0.00 1.40
9486 9797 6.434028 TGCTGTTGAGTTATGAGGCTTTATTT 59.566 34.615 0.00 0.00 0.00 1.40
9487 9798 7.609918 TGCTGTTGAGTTATGAGGCTTTATTTA 59.390 33.333 0.00 0.00 0.00 1.40
9488 9799 8.458843 GCTGTTGAGTTATGAGGCTTTATTTAA 58.541 33.333 0.00 0.00 0.00 1.52
9489 9800 9.994432 CTGTTGAGTTATGAGGCTTTATTTAAG 57.006 33.333 0.00 0.00 36.90 1.85
9490 9801 9.515226 TGTTGAGTTATGAGGCTTTATTTAAGT 57.485 29.630 0.00 0.00 36.19 2.24
9491 9802 9.774742 GTTGAGTTATGAGGCTTTATTTAAGTG 57.225 33.333 0.00 0.00 36.19 3.16
9492 9803 8.506168 TGAGTTATGAGGCTTTATTTAAGTGG 57.494 34.615 0.00 0.00 36.19 4.00
9493 9804 8.107095 TGAGTTATGAGGCTTTATTTAAGTGGT 58.893 33.333 0.00 0.00 36.19 4.16
9494 9805 8.281212 AGTTATGAGGCTTTATTTAAGTGGTG 57.719 34.615 0.00 0.00 36.19 4.17
9495 9806 8.107095 AGTTATGAGGCTTTATTTAAGTGGTGA 58.893 33.333 0.00 0.00 36.19 4.02
9496 9807 8.903820 GTTATGAGGCTTTATTTAAGTGGTGAT 58.096 33.333 0.00 0.00 36.19 3.06
9497 9808 7.573968 ATGAGGCTTTATTTAAGTGGTGATC 57.426 36.000 0.00 0.00 36.19 2.92
9498 9809 6.721318 TGAGGCTTTATTTAAGTGGTGATCT 58.279 36.000 0.00 0.00 36.19 2.75
9499 9810 7.857456 TGAGGCTTTATTTAAGTGGTGATCTA 58.143 34.615 0.00 0.00 36.19 1.98
9500 9811 7.987458 TGAGGCTTTATTTAAGTGGTGATCTAG 59.013 37.037 0.00 0.00 36.19 2.43
9501 9812 8.090788 AGGCTTTATTTAAGTGGTGATCTAGA 57.909 34.615 0.00 0.00 36.19 2.43
9502 9813 8.718656 AGGCTTTATTTAAGTGGTGATCTAGAT 58.281 33.333 4.47 4.47 36.19 1.98
9503 9814 9.998106 GGCTTTATTTAAGTGGTGATCTAGATA 57.002 33.333 4.89 0.00 36.19 1.98
9563 9874 3.904800 AAAAGGGGTGTTTGGTTTCAG 57.095 42.857 0.00 0.00 0.00 3.02
9564 9875 1.788229 AAGGGGTGTTTGGTTTCAGG 58.212 50.000 0.00 0.00 0.00 3.86
9565 9876 0.105709 AGGGGTGTTTGGTTTCAGGG 60.106 55.000 0.00 0.00 0.00 4.45
9566 9877 0.105913 GGGGTGTTTGGTTTCAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
9567 9878 1.037493 GGGTGTTTGGTTTCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
9568 9879 1.411074 GGGTGTTTGGTTTCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
9569 9880 2.384828 GGTGTTTGGTTTCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
9570 9881 2.764010 GGTGTTTGGTTTCAGGGACTTT 59.236 45.455 0.00 0.00 34.60 2.66
9571 9882 3.196901 GGTGTTTGGTTTCAGGGACTTTT 59.803 43.478 0.00 0.00 34.60 2.27
9572 9883 4.323180 GGTGTTTGGTTTCAGGGACTTTTT 60.323 41.667 0.00 0.00 34.60 1.94
9595 9906 7.807977 TTTTGAGACATTCTGCTAAAAGTCT 57.192 32.000 8.57 8.57 38.89 3.24
9596 9907 7.807977 TTTGAGACATTCTGCTAAAAGTCTT 57.192 32.000 9.71 0.00 36.56 3.01
9597 9908 7.807977 TTGAGACATTCTGCTAAAAGTCTTT 57.192 32.000 9.71 0.00 36.56 2.52
9598 9909 8.902540 TTGAGACATTCTGCTAAAAGTCTTTA 57.097 30.769 9.71 2.81 36.56 1.85
9599 9910 8.539770 TGAGACATTCTGCTAAAAGTCTTTAG 57.460 34.615 9.71 0.00 44.71 1.85
9600 9911 8.367911 TGAGACATTCTGCTAAAAGTCTTTAGA 58.632 33.333 8.47 0.00 44.70 2.10
9601 9912 9.209175 GAGACATTCTGCTAAAAGTCTTTAGAA 57.791 33.333 9.60 9.60 44.70 2.10
9602 9913 9.213799 AGACATTCTGCTAAAAGTCTTTAGAAG 57.786 33.333 11.86 7.38 46.40 2.85
9603 9914 8.910351 ACATTCTGCTAAAAGTCTTTAGAAGT 57.090 30.769 11.86 8.45 45.67 3.01
9604 9915 9.998106 ACATTCTGCTAAAAGTCTTTAGAAGTA 57.002 29.630 11.86 4.23 45.67 2.24
9606 9917 8.828688 TTCTGCTAAAAGTCTTTAGAAGTACC 57.171 34.615 10.90 0.00 45.67 3.34
9607 9918 8.191534 TCTGCTAAAAGTCTTTAGAAGTACCT 57.808 34.615 10.90 0.00 45.67 3.08
9608 9919 8.648693 TCTGCTAAAAGTCTTTAGAAGTACCTT 58.351 33.333 10.90 0.00 45.67 3.50
9609 9920 8.828688 TGCTAAAAGTCTTTAGAAGTACCTTC 57.171 34.615 8.47 0.00 44.70 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.475051 TTCAAGGTTATAGTTGGCGCTA 57.525 40.909 7.64 0.00 0.00 4.26
70 71 4.603094 TTGAGACATGTCCCCTAGACTA 57.397 45.455 22.21 0.72 46.46 2.59
164 168 3.088532 TGTGTCTTGTTTCACTTGGCTT 58.911 40.909 0.00 0.00 35.82 4.35
173 177 7.581011 AACTGATTTGTTTGTGTCTTGTTTC 57.419 32.000 0.00 0.00 0.00 2.78
202 207 8.402472 TGTTGCTAATATGTTGGCTTTGTATAC 58.598 33.333 11.62 0.00 41.84 1.47
221 226 6.083630 GCATTAAATTCGTCTTGTGTTGCTA 58.916 36.000 0.00 0.00 0.00 3.49
232 237 3.057876 TGGGTGTGTGCATTAAATTCGTC 60.058 43.478 0.00 0.00 0.00 4.20
235 240 4.626042 TGTTGGGTGTGTGCATTAAATTC 58.374 39.130 0.00 0.00 0.00 2.17
237 242 4.888326 ATGTTGGGTGTGTGCATTAAAT 57.112 36.364 0.00 0.00 0.00 1.40
238 243 4.375272 CAATGTTGGGTGTGTGCATTAAA 58.625 39.130 0.00 0.00 0.00 1.52
251 256 3.176552 TCTTTGTGTTGCAATGTTGGG 57.823 42.857 0.59 0.00 36.89 4.12
260 265 4.098416 GTGAGAGTGTTTCTTTGTGTTGC 58.902 43.478 0.00 0.00 35.87 4.17
317 325 1.448540 CCCTCGTGATCAGTGGTGC 60.449 63.158 0.00 0.00 0.00 5.01
352 360 1.741770 GCGTGGTCGATGCCTTCTT 60.742 57.895 0.00 0.00 39.71 2.52
397 407 1.603678 GCCAAGATTGCCACAAGTGTG 60.604 52.381 4.38 4.38 45.23 3.82
600 610 1.713297 GTATAAAGGGGAGGCGGAGA 58.287 55.000 0.00 0.00 0.00 3.71
653 663 1.152839 GGGACGGAGGAGAGAGAGG 60.153 68.421 0.00 0.00 0.00 3.69
1073 1083 3.611766 ATTCAAAACGACGAGGGAGAT 57.388 42.857 0.00 0.00 0.00 2.75
1224 1236 6.982141 CGACACCAAAGCTAAATACTACCATA 59.018 38.462 0.00 0.00 0.00 2.74
1445 1457 5.127194 ACACTGAGAGGAAACGAAGCATATA 59.873 40.000 0.00 0.00 0.00 0.86
1759 1788 9.495572 TCAAAACTTTTTGTTCAAATACCACTT 57.504 25.926 12.91 0.00 45.77 3.16
1760 1789 9.495572 TTCAAAACTTTTTGTTCAAATACCACT 57.504 25.926 12.91 0.00 45.77 4.00
1866 1897 6.470235 CGTCAGATTTGCCATCAGATTTTTAC 59.530 38.462 0.00 0.00 0.00 2.01
1966 1997 0.881118 GCAAATCCGCCTCAGTTCAA 59.119 50.000 0.00 0.00 0.00 2.69
2256 2289 6.073765 CGTTAACCTGATTATGTGAGGCATAC 60.074 42.308 0.00 0.00 39.57 2.39
2588 2623 9.132923 TGGATAAAAACAGTGTGGTATAACAAA 57.867 29.630 0.00 0.00 0.00 2.83
2604 2639 9.495754 CAGATCTCGAAAAGAATGGATAAAAAC 57.504 33.333 0.00 0.00 37.61 2.43
2678 2713 7.425606 CCCCTAAAATCAAAATGATAACCTCG 58.574 38.462 0.00 0.00 35.76 4.63
2905 2940 3.023949 GCCAGATGCTGAGGACGGT 62.024 63.158 0.00 0.00 36.87 4.83
3136 3174 4.019860 CCCATGTGAAGATCCCTACATAGG 60.020 50.000 6.14 0.00 43.25 2.57
3281 3319 7.775093 TCCAAATATTCAGTAAGAAGTCATGGG 59.225 37.037 0.00 0.00 40.15 4.00
3387 3425 7.174772 TGAATTTGAAATCAGATCAGTCCGAAA 59.825 33.333 0.00 0.00 0.00 3.46
3391 3429 9.084164 CATTTGAATTTGAAATCAGATCAGTCC 57.916 33.333 0.00 0.00 0.00 3.85
3453 3491 8.161425 ACCTAGAATAAAAGGCTGAACTGTTAA 58.839 33.333 0.00 0.00 36.24 2.01
3552 3590 5.250200 ACGGTGAAATTAAATACCAGCAGA 58.750 37.500 0.00 0.00 32.75 4.26
3780 3818 3.126225 GCTGTGGCTGCTGAGCTC 61.126 66.667 6.82 6.82 45.44 4.09
3985 4023 4.355720 CCTGAGCCCTGCCTTGCA 62.356 66.667 0.00 0.00 36.92 4.08
4056 4094 7.539712 ACAGGTTGATTCATAACATACGAAG 57.460 36.000 0.00 0.00 0.00 3.79
4089 4127 1.000896 CCCTGGTAAACTGGCCTGG 60.001 63.158 14.82 4.64 41.70 4.45
4153 4191 9.066892 GGTGAATCTCTTACATTGGCATTATTA 57.933 33.333 0.00 0.00 0.00 0.98
4184 4222 0.259938 GGTTGATGAGGGCCTCCAAT 59.740 55.000 30.03 18.17 34.83 3.16
4618 4656 4.164221 TCAAGCGGAAGATTATCCTCCTTT 59.836 41.667 8.09 0.75 37.83 3.11
4854 4892 2.758327 CACATGCTGCCTGGCCAT 60.758 61.111 17.53 10.44 0.00 4.40
5016 5054 5.649395 TGGTGGCTATTTCTTGAAGAATCAG 59.351 40.000 8.64 9.68 36.78 2.90
5203 5241 7.774625 TGCAAACATACCTGAGATTCATAATCA 59.225 33.333 2.74 0.00 40.42 2.57
5419 5458 1.151777 AGTTGTTGTGAGGCACGTCG 61.152 55.000 0.00 0.00 37.14 5.12
5438 5477 7.231467 AGAAAGTAGCTCCATCCTAAAAACAA 58.769 34.615 0.00 0.00 0.00 2.83
5501 5568 7.330946 GTGAAGTGCAGTAATGAACTATACACA 59.669 37.037 20.80 9.51 37.80 3.72
6144 6374 6.217693 ACTTATTTTGGGACAGAGGGAGTAAT 59.782 38.462 0.00 0.00 42.39 1.89
6196 6426 7.767261 AGTGTCTCAAGCTTAGTATAACTCTG 58.233 38.462 0.00 0.00 0.00 3.35
6225 6455 2.019807 ACACTCCCTCCGTCCTAAAA 57.980 50.000 0.00 0.00 0.00 1.52
6455 6710 0.660300 CCTTTTGTCGCTTTGTCCGC 60.660 55.000 0.00 0.00 0.00 5.54
6509 6764 4.462834 TCCTTCTGATGTACTGATGAACGT 59.537 41.667 0.00 0.00 0.00 3.99
6716 6971 5.886474 TGTTCCCTCAGTATGTAGTAGAGTG 59.114 44.000 0.00 0.00 37.40 3.51
6729 6984 3.519913 GGATCTTTACCTGTTCCCTCAGT 59.480 47.826 0.00 0.00 34.02 3.41
6737 6992 4.597507 TGACCAGAAGGATCTTTACCTGTT 59.402 41.667 5.80 0.00 37.85 3.16
7122 7377 0.322816 TTTGGCTCACTGGAGATGCC 60.323 55.000 0.00 0.00 44.26 4.40
7441 7696 2.735772 GGCCTGGCTGCTACTGCTA 61.736 63.158 19.68 0.00 40.48 3.49
7819 8074 0.236711 CTTGTCAGGTTCAAGCTGCG 59.763 55.000 11.99 0.00 43.02 5.18
7901 8156 3.451250 GCATGTTCTTTTGCGGCG 58.549 55.556 0.51 0.51 0.00 6.46
7919 8174 0.609131 TCCTTTGCCTGTTAGCTGCC 60.609 55.000 0.00 0.00 0.00 4.85
8264 8525 5.065235 TGTTCTGCATTTTCATGACTCTCA 58.935 37.500 0.00 0.00 31.07 3.27
8419 8680 4.101741 GGTATTCAAGATGAGTGCTACCCT 59.898 45.833 0.00 0.00 0.00 4.34
8497 8758 1.973812 GGAGGCCCTGCACTTTGTC 60.974 63.158 0.00 0.00 0.00 3.18
8720 8993 5.412904 AGGCAGTAAACTAGAATGCTGAAAC 59.587 40.000 16.93 9.08 37.08 2.78
8990 9266 7.570507 CGTTAGCAAACACTACTAGCATTTTCA 60.571 37.037 0.00 0.00 35.16 2.69
9037 9313 8.706492 TGTACCGAATACCAACAAATAAGTAG 57.294 34.615 0.00 0.00 32.16 2.57
9072 9352 3.440522 TCAACGGAAACACAACATGACAA 59.559 39.130 0.00 0.00 0.00 3.18
9249 9531 4.200092 AGGAAGACACTCTTTTGTTGGTC 58.800 43.478 0.00 0.00 36.73 4.02
9264 9546 3.634448 TGCTGCTAGTCTGATAGGAAGAC 59.366 47.826 0.00 0.00 43.66 3.01
9266 9548 4.870123 ATGCTGCTAGTCTGATAGGAAG 57.130 45.455 0.00 0.00 0.00 3.46
9273 9555 1.345741 GGCCATATGCTGCTAGTCTGA 59.654 52.381 0.00 0.00 40.92 3.27
9319 9601 3.858868 GACGGAAGGTGCGCTGTGA 62.859 63.158 9.73 0.00 33.30 3.58
9365 9676 3.627395 AATCCCACGTAATCAGCTTCA 57.373 42.857 0.00 0.00 0.00 3.02
9366 9677 3.487544 GCAAATCCCACGTAATCAGCTTC 60.488 47.826 0.00 0.00 0.00 3.86
9408 9719 1.146359 ACCAACACCCCCTTAGTTTCC 59.854 52.381 0.00 0.00 0.00 3.13
9417 9728 0.610785 CCACACATACCAACACCCCC 60.611 60.000 0.00 0.00 0.00 5.40
9418 9729 0.111639 ACCACACATACCAACACCCC 59.888 55.000 0.00 0.00 0.00 4.95
9419 9730 2.863132 TACCACACATACCAACACCC 57.137 50.000 0.00 0.00 0.00 4.61
9420 9731 2.486592 GCTTACCACACATACCAACACC 59.513 50.000 0.00 0.00 0.00 4.16
9421 9732 3.142951 TGCTTACCACACATACCAACAC 58.857 45.455 0.00 0.00 0.00 3.32
9422 9733 3.493767 TGCTTACCACACATACCAACA 57.506 42.857 0.00 0.00 0.00 3.33
9423 9734 5.385509 AATTGCTTACCACACATACCAAC 57.614 39.130 0.00 0.00 0.00 3.77
9424 9735 5.536538 TGAAATTGCTTACCACACATACCAA 59.463 36.000 0.00 0.00 0.00 3.67
9425 9736 5.073428 TGAAATTGCTTACCACACATACCA 58.927 37.500 0.00 0.00 0.00 3.25
9426 9737 5.637006 TGAAATTGCTTACCACACATACC 57.363 39.130 0.00 0.00 0.00 2.73
9427 9738 9.801873 AAATATGAAATTGCTTACCACACATAC 57.198 29.630 0.00 0.00 0.00 2.39
9428 9739 9.800433 CAAATATGAAATTGCTTACCACACATA 57.200 29.630 0.00 0.00 0.00 2.29
9429 9740 8.530311 TCAAATATGAAATTGCTTACCACACAT 58.470 29.630 0.00 0.00 30.99 3.21
9430 9741 7.890515 TCAAATATGAAATTGCTTACCACACA 58.109 30.769 0.00 0.00 30.99 3.72
9431 9742 8.755696 TTCAAATATGAAATTGCTTACCACAC 57.244 30.769 0.00 0.00 42.47 3.82
9445 9756 8.525316 ACTCAACAGCATCATTTCAAATATGAA 58.475 29.630 0.00 0.00 43.70 2.57
9446 9757 8.058667 ACTCAACAGCATCATTTCAAATATGA 57.941 30.769 0.00 0.00 36.53 2.15
9447 9758 8.697846 AACTCAACAGCATCATTTCAAATATG 57.302 30.769 0.00 0.00 0.00 1.78
9449 9760 9.791820 CATAACTCAACAGCATCATTTCAAATA 57.208 29.630 0.00 0.00 0.00 1.40
9450 9761 8.525316 TCATAACTCAACAGCATCATTTCAAAT 58.475 29.630 0.00 0.00 0.00 2.32
9451 9762 7.884257 TCATAACTCAACAGCATCATTTCAAA 58.116 30.769 0.00 0.00 0.00 2.69
9452 9763 7.362315 CCTCATAACTCAACAGCATCATTTCAA 60.362 37.037 0.00 0.00 0.00 2.69
9453 9764 6.094464 CCTCATAACTCAACAGCATCATTTCA 59.906 38.462 0.00 0.00 0.00 2.69
9454 9765 6.493116 CCTCATAACTCAACAGCATCATTTC 58.507 40.000 0.00 0.00 0.00 2.17
9455 9766 5.163581 GCCTCATAACTCAACAGCATCATTT 60.164 40.000 0.00 0.00 0.00 2.32
9456 9767 4.337555 GCCTCATAACTCAACAGCATCATT 59.662 41.667 0.00 0.00 0.00 2.57
9457 9768 3.881688 GCCTCATAACTCAACAGCATCAT 59.118 43.478 0.00 0.00 0.00 2.45
9458 9769 3.054875 AGCCTCATAACTCAACAGCATCA 60.055 43.478 0.00 0.00 0.00 3.07
9459 9770 3.539604 AGCCTCATAACTCAACAGCATC 58.460 45.455 0.00 0.00 0.00 3.91
9460 9771 3.641434 AGCCTCATAACTCAACAGCAT 57.359 42.857 0.00 0.00 0.00 3.79
9461 9772 3.423539 AAGCCTCATAACTCAACAGCA 57.576 42.857 0.00 0.00 0.00 4.41
9462 9773 6.442513 AATAAAGCCTCATAACTCAACAGC 57.557 37.500 0.00 0.00 0.00 4.40
9463 9774 9.994432 CTTAAATAAAGCCTCATAACTCAACAG 57.006 33.333 0.00 0.00 0.00 3.16
9464 9775 9.515226 ACTTAAATAAAGCCTCATAACTCAACA 57.485 29.630 0.00 0.00 38.93 3.33
9465 9776 9.774742 CACTTAAATAAAGCCTCATAACTCAAC 57.225 33.333 0.00 0.00 38.93 3.18
9466 9777 8.956426 CCACTTAAATAAAGCCTCATAACTCAA 58.044 33.333 0.00 0.00 38.93 3.02
9467 9778 8.107095 ACCACTTAAATAAAGCCTCATAACTCA 58.893 33.333 0.00 0.00 38.93 3.41
9468 9779 8.398665 CACCACTTAAATAAAGCCTCATAACTC 58.601 37.037 0.00 0.00 38.93 3.01
9469 9780 8.107095 TCACCACTTAAATAAAGCCTCATAACT 58.893 33.333 0.00 0.00 38.93 2.24
9470 9781 8.276252 TCACCACTTAAATAAAGCCTCATAAC 57.724 34.615 0.00 0.00 38.93 1.89
9471 9782 9.120538 GATCACCACTTAAATAAAGCCTCATAA 57.879 33.333 0.00 0.00 38.93 1.90
9472 9783 8.494433 AGATCACCACTTAAATAAAGCCTCATA 58.506 33.333 0.00 0.00 38.93 2.15
9473 9784 7.349598 AGATCACCACTTAAATAAAGCCTCAT 58.650 34.615 0.00 0.00 38.93 2.90
9474 9785 6.721318 AGATCACCACTTAAATAAAGCCTCA 58.279 36.000 0.00 0.00 38.93 3.86
9475 9786 8.204836 TCTAGATCACCACTTAAATAAAGCCTC 58.795 37.037 0.00 0.00 38.93 4.70
9476 9787 8.090788 TCTAGATCACCACTTAAATAAAGCCT 57.909 34.615 0.00 0.00 38.93 4.58
9477 9788 8.910351 ATCTAGATCACCACTTAAATAAAGCC 57.090 34.615 0.00 0.00 38.93 4.35
9542 9853 3.054728 CCTGAAACCAAACACCCCTTTTT 60.055 43.478 0.00 0.00 0.00 1.94
9543 9854 2.503765 CCTGAAACCAAACACCCCTTTT 59.496 45.455 0.00 0.00 0.00 2.27
9544 9855 2.115427 CCTGAAACCAAACACCCCTTT 58.885 47.619 0.00 0.00 0.00 3.11
9545 9856 1.691163 CCCTGAAACCAAACACCCCTT 60.691 52.381 0.00 0.00 0.00 3.95
9546 9857 0.105709 CCCTGAAACCAAACACCCCT 60.106 55.000 0.00 0.00 0.00 4.79
9547 9858 0.105913 TCCCTGAAACCAAACACCCC 60.106 55.000 0.00 0.00 0.00 4.95
9548 9859 1.037493 GTCCCTGAAACCAAACACCC 58.963 55.000 0.00 0.00 0.00 4.61
9549 9860 2.067365 AGTCCCTGAAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
9550 9861 4.465632 AAAAGTCCCTGAAACCAAACAC 57.534 40.909 0.00 0.00 0.00 3.32
9570 9881 8.225603 AGACTTTTAGCAGAATGTCTCAAAAA 57.774 30.769 12.07 0.00 38.77 1.94
9571 9882 7.807977 AGACTTTTAGCAGAATGTCTCAAAA 57.192 32.000 12.07 0.00 38.77 2.44
9572 9883 7.807977 AAGACTTTTAGCAGAATGTCTCAAA 57.192 32.000 15.89 0.00 40.83 2.69
9573 9884 7.807977 AAAGACTTTTAGCAGAATGTCTCAA 57.192 32.000 15.89 0.00 40.83 3.02
9574 9885 8.367911 TCTAAAGACTTTTAGCAGAATGTCTCA 58.632 33.333 5.61 9.59 43.52 3.27
9575 9886 8.764524 TCTAAAGACTTTTAGCAGAATGTCTC 57.235 34.615 5.61 0.00 43.52 3.36
9576 9887 9.213799 CTTCTAAAGACTTTTAGCAGAATGTCT 57.786 33.333 5.61 12.07 43.52 3.41
9577 9888 8.994170 ACTTCTAAAGACTTTTAGCAGAATGTC 58.006 33.333 5.61 8.93 43.52 3.06
9578 9889 8.910351 ACTTCTAAAGACTTTTAGCAGAATGT 57.090 30.769 5.61 6.61 43.52 2.71
9580 9891 9.438228 GGTACTTCTAAAGACTTTTAGCAGAAT 57.562 33.333 5.61 3.16 43.52 2.40
9581 9892 8.648693 AGGTACTTCTAAAGACTTTTAGCAGAA 58.351 33.333 5.61 8.02 43.52 3.02
9582 9893 8.191534 AGGTACTTCTAAAGACTTTTAGCAGA 57.808 34.615 5.61 0.00 43.52 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.