AutoCloner

Multiple sequence alignment - TraesCS5D01G096600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G096600	chr5D	100.000	2510	0	0	1	2510	107011556	107014065	0.000000e+00	4636.0
1	TraesCS5D01G096600	chr5D	98.017	1916	18	9	1	1900	106939217	106941128	0.000000e+00	3310.0
2	TraesCS5D01G096600	chr5D	87.309	851	79	13	827	1662	104580051	104579215	0.000000e+00	946.0
3	TraesCS5D01G096600	chr5D	87.382	848	78	13	827	1659	104825941	104826774	0.000000e+00	946.0
4	TraesCS5D01G096600	chr5D	86.530	438	54	5	1889	2324	548171640	548172074	6.280000e-131	477.0
5	TraesCS5D01G096600	chr5D	94.118	187	8	2	2321	2507	106941108	106941291	5.290000e-72	281.0
6	TraesCS5D01G096600	chr5D	93.855	179	10	1	2321	2499	107030745	107030922	4.120000e-68	268.0
7	TraesCS5D01G096600	chr5D	95.105	143	4	3	1758	1900	107030626	107030765	3.250000e-54	222.0
8	TraesCS5D01G096600	chr5D	82.474	194	30	4	1208	1399	105620277	105620086	1.540000e-37	167.0
9	TraesCS5D01G096600	chr5A	94.452	1496	60	11	420	1900	136643564	136645051	0.000000e+00	2281.0
10	TraesCS5D01G096600	chr5A	90.583	446	39	3	1889	2333	54752200	54751757	2.780000e-164	588.0
11	TraesCS5D01G096600	chr5A	93.827	162	8	2	1	160	136641826	136641987	2.490000e-60	243.0
12	TraesCS5D01G096600	chr5A	92.537	134	9	1	2321	2454	136645031	136645163	9.160000e-45	191.0
13	TraesCS5D01G096600	chr5A	95.604	91	3	1	158	247	136642251	136642341	7.240000e-31	145.0
14	TraesCS5D01G096600	chr5A	88.060	67	8	0	181	247	136642324	136642390	2.070000e-11	80.5
15	TraesCS5D01G096600	chr5B	97.050	983	25	3	921	1900	115870899	115871880	0.000000e+00	1652.0
16	TraesCS5D01G096600	chr5B	90.992	655	12	11	263	888	115870269	115870905	0.000000e+00	839.0
17	TraesCS5D01G096600	chr5B	89.855	483	36	3	827	1298	114446393	114446873	2.130000e-170	608.0
18	TraesCS5D01G096600	chr5B	86.321	424	44	10	1293	1715	114452344	114452754	1.370000e-122	449.0
19	TraesCS5D01G096600	chr5B	97.778	225	4	1	21	244	115869927	115870151	1.090000e-103	387.0
20	TraesCS5D01G096600	chr5B	93.125	160	11	0	2351	2510	115886029	115886188	4.170000e-58	235.0
21	TraesCS5D01G096600	chr5B	81.250	192	36	0	1208	1399	115654909	115654718	3.340000e-34	156.0
22	TraesCS5D01G096600	chr2D	90.115	435	34	6	1889	2323	46177688	46178113	7.840000e-155	556.0
23	TraesCS5D01G096600	chr4D	86.449	428	51	6	1898	2324	166040946	166040525	1.760000e-126	462.0
24	TraesCS5D01G096600	chr4D	86.047	430	53	6	1896	2324	236387146	236386723	2.940000e-124	455.0
25	TraesCS5D01G096600	chr6B	84.075	427	60	6	1898	2323	135877602	135878021	3.010000e-109	405.0
26	TraesCS5D01G096600	chr6B	83.916	429	61	7	1895	2322	135873157	135873578	1.080000e-108	403.0
27	TraesCS5D01G096600	chr6B	83.645	428	60	8	1898	2323	135874937	135875356	6.510000e-106	394.0
28	TraesCS5D01G096600	chr6B	83.607	427	62	7	1898	2323	135879378	135879797	6.510000e-106	394.0
29	TraesCS5D01G096600	chr3A	83.871	186	22	6	69	247	507118597	507118781	1.190000e-38	171.0
30	TraesCS5D01G096600	chr2A	86.842	76	7	3	133	208	762413653	762413581	5.750000e-12	82.4
31	TraesCS5D01G096600	chr3D	85.294	68	10	0	180	247	384565964	384566031	1.250000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G096600	chr5D	107011556	107014065	2509	False	4636.000000	4636	100.000000	1	2510	1	chr5D.!!$F2	2509
1	TraesCS5D01G096600	chr5D	106939217	106941291	2074	False	1795.500000	3310	96.067500	1	2507	2	chr5D.!!$F4	2506
2	TraesCS5D01G096600	chr5D	104579215	104580051	836	True	946.000000	946	87.309000	827	1662	1	chr5D.!!$R1	835
3	TraesCS5D01G096600	chr5D	104825941	104826774	833	False	946.000000	946	87.382000	827	1659	1	chr5D.!!$F1	832
4	TraesCS5D01G096600	chr5A	136641826	136645163	3337	False	588.100000	2281	92.896000	1	2454	5	chr5A.!!$F1	2453
5	TraesCS5D01G096600	chr5B	115869927	115871880	1953	False	959.333333	1652	95.273333	21	1900	3	chr5B.!!$F4	1879
6	TraesCS5D01G096600	chr6B	135873157	135879797	6640	False	399.000000	405	83.810750	1895	2323	4	chr6B.!!$F1	428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
40	41	8.095792	TGATGATATTTGTCAAGGCAAATTGTT	58.904	29.63	16.66	4.3	43.97	2.83	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2037	5235	0.042581	TCCATGGTGTAGCTCCCTCA	59.957	55.0	12.58	0.0	0.0	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	8.095792	TGATGATATTTGTCAAGGCAAATTGTT	58.904	29.630	16.66	4.30	43.97	2.83
1427	2827	2.904866	GCAACGTGCCCTTGACCA	60.905	61.111	0.00	0.00	37.42	4.02
1537	2937	2.564947	CAAGCCCAGTGAACTAGACTCT	59.435	50.000	0.00	0.00	0.00	3.24
1795	3208	2.163509	GGCAACCCCTTTTCTCTTCTC	58.836	52.381	0.00	0.00	0.00	2.87
1926	3346	1.078709	CCACGATGAATGACACGCTT	58.921	50.000	0.00	0.00	0.00	4.68
1928	3348	1.460743	CACGATGAATGACACGCTTGT	59.539	47.619	0.00	0.00	39.32	3.16
1939	4248	3.803082	CGCTTGTGGGATGGTGCG	61.803	66.667	0.00	0.00	37.57	5.34
1953	4262	3.587933	TGCGCGACCCAAAACACC	61.588	61.111	12.10	0.00	0.00	4.16
1960	4269	1.269448	CGACCCAAAACACCAATGAGG	59.731	52.381	0.00	0.00	45.67	3.86
1962	4271	1.047002	CCCAAAACACCAATGAGGCA	58.953	50.000	0.00	0.00	43.14	4.75
1971	4280	1.171308	CCAATGAGGCACACAAGAGG	58.829	55.000	0.00	0.00	29.57	3.69
1972	4281	1.271543	CCAATGAGGCACACAAGAGGA	60.272	52.381	0.00	0.00	29.57	3.71
1979	5177	1.681166	GGCACACAAGAGGATGCTCAT	60.681	52.381	17.24	0.68	38.18	2.90
1986	5184	3.453717	ACAAGAGGATGCTCATTGCTCTA	59.546	43.478	17.24	0.00	40.52	2.43
1990	5188	2.959030	AGGATGCTCATTGCTCTACGTA	59.041	45.455	0.00	0.00	43.37	3.57
2010	5208	4.619394	CGTATTCTAGCCATGTGGGAGATC	60.619	50.000	0.54	0.00	40.01	2.75
2013	5211	2.091111	TCTAGCCATGTGGGAGATCTGA	60.091	50.000	0.00	0.00	40.01	3.27
2047	5245	2.819608	GCAATTGTGTTTGAGGGAGCTA	59.180	45.455	7.40	0.00	0.00	3.32
2049	5247	3.788227	ATTGTGTTTGAGGGAGCTACA	57.212	42.857	0.00	0.00	0.00	2.74
2054	5252	2.290260	TGTTTGAGGGAGCTACACCATG	60.290	50.000	0.00	0.00	0.00	3.66
2056	5254	0.042581	TGAGGGAGCTACACCATGGA	59.957	55.000	21.47	0.00	0.00	3.41
2058	5256	2.090775	TGAGGGAGCTACACCATGGATA	60.091	50.000	21.47	9.51	0.00	2.59
2060	5258	3.391296	GAGGGAGCTACACCATGGATAAA	59.609	47.826	21.47	0.00	0.00	1.40
2061	5259	3.983410	AGGGAGCTACACCATGGATAAAT	59.017	43.478	21.47	0.00	0.00	1.40
2062	5260	4.042187	AGGGAGCTACACCATGGATAAATC	59.958	45.833	21.47	8.76	0.00	2.17
2070	7044	4.581824	ACACCATGGATAAATCATGTGCTC	59.418	41.667	21.47	0.00	40.07	4.26
2080	7054	1.737735	CATGTGCTCCGTCGCTTCA	60.738	57.895	0.00	0.00	0.00	3.02
2121	7095	4.067192	GGAAACAAGCGGGTCTACTTAAA	58.933	43.478	0.00	0.00	0.00	1.52
2124	7098	2.636403	ACAAGCGGGTCTACTTAAAGGT	59.364	45.455	0.00	0.00	0.00	3.50
2127	7101	2.233186	AGCGGGTCTACTTAAAGGTGAC	59.767	50.000	0.00	0.00	0.00	3.67
2142	7116	1.150536	TGACCTTGCCGGCTTCTTT	59.849	52.632	29.70	8.01	35.61	2.52
2145	7119	1.199327	GACCTTGCCGGCTTCTTTAAC	59.801	52.381	29.70	7.75	35.61	2.01
2147	7121	1.243902	CTTGCCGGCTTCTTTAACCA	58.756	50.000	29.70	0.00	0.00	3.67
2157	7131	2.554370	TCTTTAACCAGGTGGAACGG	57.446	50.000	2.10	0.00	38.12	4.44
2166	7140	4.078516	GTGGAACGGCGGGCTAGT	62.079	66.667	13.24	0.00	0.00	2.57
2167	7141	4.077184	TGGAACGGCGGGCTAGTG	62.077	66.667	13.24	0.00	0.00	2.74
2168	7142	4.078516	GGAACGGCGGGCTAGTGT	62.079	66.667	13.24	0.00	0.00	3.55
2170	7144	4.388499	AACGGCGGGCTAGTGTGG	62.388	66.667	13.24	0.00	0.00	4.17
2182	7156	3.596214	GCTAGTGTGGCAAGTTAGCTTA	58.404	45.455	14.52	0.00	35.15	3.09
2187	7161	3.375299	GTGTGGCAAGTTAGCTTATGAGG	59.625	47.826	0.00	0.00	32.87	3.86
2189	7163	3.873952	GTGGCAAGTTAGCTTATGAGGAG	59.126	47.826	0.00	0.00	32.87	3.69
2191	7165	3.471680	GCAAGTTAGCTTATGAGGAGGG	58.528	50.000	0.00	0.00	32.87	4.30
2194	7168	4.273300	AGTTAGCTTATGAGGAGGGAGT	57.727	45.455	0.00	0.00	0.00	3.85
2196	7170	5.390387	AGTTAGCTTATGAGGAGGGAGTAG	58.610	45.833	0.00	0.00	0.00	2.57
2197	7171	5.134679	AGTTAGCTTATGAGGAGGGAGTAGA	59.865	44.000	0.00	0.00	0.00	2.59
2198	7172	4.112634	AGCTTATGAGGAGGGAGTAGAG	57.887	50.000	0.00	0.00	0.00	2.43
2200	7174	4.079253	GCTTATGAGGAGGGAGTAGAGAG	58.921	52.174	0.00	0.00	0.00	3.20
2201	7175	4.447180	GCTTATGAGGAGGGAGTAGAGAGT	60.447	50.000	0.00	0.00	0.00	3.24
2202	7176	5.221966	GCTTATGAGGAGGGAGTAGAGAGTA	60.222	48.000	0.00	0.00	0.00	2.59
2203	7177	4.993705	ATGAGGAGGGAGTAGAGAGTAG	57.006	50.000	0.00	0.00	0.00	2.57
2208	7182	3.325605	GAGGGAGTAGAGAGTAGGGGTA	58.674	54.545	0.00	0.00	0.00	3.69
2217	7191	1.288335	AGAGTAGGGGTAGAGGTGGTG	59.712	57.143	0.00	0.00	0.00	4.17
2225	7199	2.615493	GGGTAGAGGTGGTGATGTTGTG	60.615	54.545	0.00	0.00	0.00	3.33
2234	7208	4.500545	GGTGGTGATGTTGTGCATGTAAAA	60.501	41.667	0.00	0.00	38.06	1.52
2235	7209	5.229423	GTGGTGATGTTGTGCATGTAAAAT	58.771	37.500	0.00	0.00	38.06	1.82
2246	7221	6.673106	TGTGCATGTAAAATCGTGTAACAAT	58.327	32.000	0.00	0.00	35.74	2.71
2247	7222	6.580416	TGTGCATGTAAAATCGTGTAACAATG	59.420	34.615	0.00	0.00	35.74	2.82
2260	9010	0.105760	AACAATGTTGTGGAGGGGCA	60.106	50.000	0.00	0.00	41.31	5.36
2277	9027	1.970640	GGCACTTTCACCCAATTCCTT	59.029	47.619	0.00	0.00	0.00	3.36
2278	9028	2.029020	GGCACTTTCACCCAATTCCTTC	60.029	50.000	0.00	0.00	0.00	3.46
2279	9029	2.893489	GCACTTTCACCCAATTCCTTCT	59.107	45.455	0.00	0.00	0.00	2.85
2343	9093	7.945033	AAAAAGACATGCAATTTCGTGTATT	57.055	28.000	2.79	3.85	38.57	1.89
2344	9094	6.932901	AAAGACATGCAATTTCGTGTATTG	57.067	33.333	10.37	0.00	37.44	1.90
2345	9095	4.985413	AGACATGCAATTTCGTGTATTGG	58.015	39.130	2.79	0.00	36.42	3.16
2346	9096	3.510719	ACATGCAATTTCGTGTATTGGC	58.489	40.909	0.75	0.00	34.68	4.52
2347	9097	3.056962	ACATGCAATTTCGTGTATTGGCA	60.057	39.130	0.75	0.00	34.68	4.92
2457	9207	2.158813	AGAAAACCGAACTCCAGCAGAA	60.159	45.455	0.00	0.00	0.00	3.02
2502	9252	1.269726	CGCCCAACAAAACTGCTTGAT	60.270	47.619	0.00	0.00	0.00	2.57
2507	9257	4.025813	CCCAACAAAACTGCTTGATTTTCG	60.026	41.667	0.00	0.00	0.00	3.46
2508	9258	4.508052	CAACAAAACTGCTTGATTTTCGC	58.492	39.130	0.00	0.00	0.00	4.70
2509	9259	3.779759	ACAAAACTGCTTGATTTTCGCA	58.220	36.364	0.00	0.00	0.00	5.10

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	3.557686	GGGGTGAAAACCTAAAGTAGCGA	60.558	47.826	0.00	0.00	0.00	4.93
1537	2937	3.317993	TCGTCTTCAGATCACAAGTGTCA	59.682	43.478	0.00	0.00	0.00	3.58
1795	3208	0.391661	AGTTACAGCCGCATGTGAGG	60.392	55.000	8.11	3.68	38.10	3.86
1939	4248	0.671251	TCATTGGTGTTTTGGGTCGC	59.329	50.000	0.00	0.00	0.00	5.19
1953	4262	2.189594	TCCTCTTGTGTGCCTCATTG	57.810	50.000	0.00	0.00	0.00	2.82
1960	4269	1.747709	ATGAGCATCCTCTTGTGTGC	58.252	50.000	0.00	0.00	38.93	4.57
1962	4271	2.089980	GCAATGAGCATCCTCTTGTGT	58.910	47.619	0.00	0.00	44.79	3.72
1979	5177	4.341235	ACATGGCTAGAATACGTAGAGCAA	59.659	41.667	17.88	10.81	34.76	3.91
1986	5184	2.365617	CTCCCACATGGCTAGAATACGT	59.634	50.000	0.00	0.00	0.00	3.57
1990	5188	3.327172	CAGATCTCCCACATGGCTAGAAT	59.673	47.826	0.00	0.00	32.04	2.40
2010	5208	4.150980	ACAATTGCATTGCGATGTTTTCAG	59.849	37.500	15.45	4.69	43.98	3.02
2013	5211	3.808726	ACACAATTGCATTGCGATGTTTT	59.191	34.783	15.45	4.39	43.98	2.43
2035	5233	1.281867	CCATGGTGTAGCTCCCTCAAA	59.718	52.381	2.57	0.00	0.00	2.69
2037	5235	0.042581	TCCATGGTGTAGCTCCCTCA	59.957	55.000	12.58	0.00	0.00	3.86
2043	5241	5.766670	CACATGATTTATCCATGGTGTAGCT	59.233	40.000	12.58	0.00	44.11	3.32
2047	5245	4.539726	AGCACATGATTTATCCATGGTGT	58.460	39.130	12.58	2.84	44.11	4.16
2049	5247	4.147321	GGAGCACATGATTTATCCATGGT	58.853	43.478	12.58	1.59	44.11	3.55
2054	5252	2.476619	CGACGGAGCACATGATTTATCC	59.523	50.000	0.00	0.00	0.00	2.59
2056	5254	1.867233	GCGACGGAGCACATGATTTAT	59.133	47.619	0.00	0.00	37.05	1.40
2058	5256	0.391661	AGCGACGGAGCACATGATTT	60.392	50.000	0.00	0.00	40.15	2.17
2060	5258	0.807667	GAAGCGACGGAGCACATGAT	60.808	55.000	0.00	0.00	40.15	2.45
2061	5259	1.446099	GAAGCGACGGAGCACATGA	60.446	57.895	0.00	0.00	40.15	3.07
2062	5260	1.086067	ATGAAGCGACGGAGCACATG	61.086	55.000	7.12	0.00	40.15	3.21
2070	7044	0.807667	CTTCCTCCATGAAGCGACGG	60.808	60.000	0.00	0.00	35.72	4.79
2080	7054	1.212935	CCAATTCCGTCCTTCCTCCAT	59.787	52.381	0.00	0.00	0.00	3.41
2113	7087	3.000727	CGGCAAGGTCACCTTTAAGTAG	58.999	50.000	6.26	0.00	41.69	2.57
2121	7095	3.553095	GAAGCCGGCAAGGTCACCT	62.553	63.158	31.54	0.00	43.70	4.00
2124	7098	0.398696	TAAAGAAGCCGGCAAGGTCA	59.601	50.000	31.54	6.42	43.70	4.02
2127	7101	0.526211	GGTTAAAGAAGCCGGCAAGG	59.474	55.000	31.54	0.00	44.97	3.61
2142	7116	2.344500	CGCCGTTCCACCTGGTTA	59.656	61.111	0.00	0.00	36.34	2.85
2157	7131	3.127533	CTTGCCACACTAGCCCGC	61.128	66.667	0.00	0.00	0.00	6.13
2162	7136	5.419542	TCATAAGCTAACTTGCCACACTAG	58.580	41.667	0.00	0.00	36.57	2.57
2163	7137	5.414789	TCATAAGCTAACTTGCCACACTA	57.585	39.130	0.00	0.00	36.57	2.74
2166	7140	3.263170	TCCTCATAAGCTAACTTGCCACA	59.737	43.478	0.00	0.00	36.57	4.17
2167	7141	3.873910	TCCTCATAAGCTAACTTGCCAC	58.126	45.455	0.00	0.00	36.57	5.01
2168	7142	3.118261	CCTCCTCATAAGCTAACTTGCCA	60.118	47.826	0.00	0.00	36.57	4.92
2170	7144	3.134804	TCCCTCCTCATAAGCTAACTTGC	59.865	47.826	0.00	0.00	36.57	4.01
2182	7156	3.655777	CCTACTCTCTACTCCCTCCTCAT	59.344	52.174	0.00	0.00	0.00	2.90
2187	7161	2.137702	ACCCCTACTCTCTACTCCCTC	58.862	57.143	0.00	0.00	0.00	4.30
2189	7163	3.325605	TCTACCCCTACTCTCTACTCCC	58.674	54.545	0.00	0.00	0.00	4.30
2191	7165	3.975982	ACCTCTACCCCTACTCTCTACTC	59.024	52.174	0.00	0.00	0.00	2.59
2194	7168	3.054576	CCACCTCTACCCCTACTCTCTA	58.945	54.545	0.00	0.00	0.00	2.43
2196	7170	1.570024	ACCACCTCTACCCCTACTCTC	59.430	57.143	0.00	0.00	0.00	3.20
2197	7171	1.288335	CACCACCTCTACCCCTACTCT	59.712	57.143	0.00	0.00	0.00	3.24
2198	7172	1.287146	TCACCACCTCTACCCCTACTC	59.713	57.143	0.00	0.00	0.00	2.59
2200	7174	2.040178	CATCACCACCTCTACCCCTAC	58.960	57.143	0.00	0.00	0.00	3.18
2201	7175	1.649633	ACATCACCACCTCTACCCCTA	59.350	52.381	0.00	0.00	0.00	3.53
2202	7176	0.417841	ACATCACCACCTCTACCCCT	59.582	55.000	0.00	0.00	0.00	4.79
2203	7177	1.065418	CAACATCACCACCTCTACCCC	60.065	57.143	0.00	0.00	0.00	4.95
2208	7182	0.473755	TGCACAACATCACCACCTCT	59.526	50.000	0.00	0.00	0.00	3.69
2217	7191	5.153513	ACACGATTTTACATGCACAACATC	58.846	37.500	0.00	0.00	36.64	3.06
2225	7199	7.114247	ACAACATTGTTACACGATTTTACATGC	59.886	33.333	0.86	0.00	38.47	4.06
2234	7208	3.751175	CCTCCACAACATTGTTACACGAT	59.249	43.478	0.86	0.00	39.91	3.73
2235	7209	3.135225	CCTCCACAACATTGTTACACGA	58.865	45.455	0.86	0.00	39.91	4.35
2246	7221	0.467290	GAAAGTGCCCCTCCACAACA	60.467	55.000	0.00	0.00	38.18	3.33
2247	7222	0.467290	TGAAAGTGCCCCTCCACAAC	60.467	55.000	0.00	0.00	38.18	3.32
2260	9010	7.855784	ATTAAAGAAGGAATTGGGTGAAAGT	57.144	32.000	0.00	0.00	0.00	2.66
2323	9073	4.675146	GCCAATACACGAAATTGCATGTCT	60.675	41.667	0.00	0.00	33.80	3.41
2324	9074	3.547468	GCCAATACACGAAATTGCATGTC	59.453	43.478	0.00	0.00	33.80	3.06
2325	9075	3.056962	TGCCAATACACGAAATTGCATGT	60.057	39.130	0.00	0.00	33.80	3.21
2326	9076	3.509740	TGCCAATACACGAAATTGCATG	58.490	40.909	0.00	0.00	33.80	4.06
2327	9077	3.865011	TGCCAATACACGAAATTGCAT	57.135	38.095	0.00	0.00	33.80	3.96
2328	9078	3.650070	TTGCCAATACACGAAATTGCA	57.350	38.095	0.00	0.00	33.80	4.08
2329	9079	4.981389	TTTTGCCAATACACGAAATTGC	57.019	36.364	0.00	0.00	33.80	3.56
2372	9122	4.481368	TCTATGTAACGGGCAAGTTCAT	57.519	40.909	0.87	7.64	35.70	2.57
2378	9128	2.120312	TGGGATCTATGTAACGGGCAA	58.880	47.619	0.00	0.00	0.00	4.52
2437	9187	1.878953	TCTGCTGGAGTTCGGTTTTC	58.121	50.000	0.00	0.00	0.00	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.