Multiple sequence alignment - TraesCS5D01G096000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G096000 chr5D 100.000 2453 0 0 1 2453 105621481 105619029 0.000000e+00 4530.0
1 TraesCS5D01G096000 chr5D 82.979 188 28 4 1205 1390 107012763 107012948 1.510000e-37 167.0
2 TraesCS5D01G096000 chr5B 96.787 1245 25 6 813 2043 115655301 115654058 0.000000e+00 2063.0
3 TraesCS5D01G096000 chr5B 92.961 412 18 4 2042 2453 115653944 115653544 7.550000e-165 590.0
4 TraesCS5D01G096000 chr5B 94.853 136 7 0 685 820 115657702 115657567 1.910000e-51 213.0
5 TraesCS5D01G096000 chr5B 82.979 188 28 4 1205 1390 115871187 115871372 1.510000e-37 167.0
6 TraesCS5D01G096000 chr5B 89.474 95 10 0 1292 1386 114452346 114452440 1.190000e-23 121.0
7 TraesCS5D01G096000 chr3D 92.359 301 19 3 2153 2453 25112631 25112335 2.250000e-115 425.0
8 TraesCS5D01G096000 chr3D 78.455 246 38 10 242 477 158362193 158361953 1.970000e-31 147.0
9 TraesCS5D01G096000 chr1B 91.391 302 18 6 2153 2453 120636342 120636048 8.170000e-110 407.0
10 TraesCS5D01G096000 chr5A 85.235 149 22 0 1242 1390 136644396 136644544 1.170000e-33 154.0
11 TraesCS5D01G096000 chr1D 79.891 184 30 7 252 431 24097309 24097129 7.120000e-26 128.0
12 TraesCS5D01G096000 chr1D 81.818 121 22 0 268 388 8993992 8994112 4.320000e-18 102.0
13 TraesCS5D01G096000 chr7D 85.841 113 15 1 252 363 591477420 591477532 4.280000e-23 119.0
14 TraesCS5D01G096000 chr7B 76.423 246 38 16 3 242 100354503 100354734 5.540000e-22 115.0
15 TraesCS5D01G096000 chr4A 76.419 229 45 5 252 471 584427492 584427264 5.540000e-22 115.0
16 TraesCS5D01G096000 chr4A 80.952 126 19 5 265 388 636682770 636682892 7.220000e-16 95.3
17 TraesCS5D01G096000 chr4A 74.459 231 41 13 243 471 731393521 731393735 1.560000e-12 84.2
18 TraesCS5D01G096000 chr2B 75.709 247 40 12 243 473 230976772 230976530 3.340000e-19 106.0
19 TraesCS5D01G096000 chr3A 82.243 107 18 1 236 341 579048759 579048865 9.340000e-15 91.6
20 TraesCS5D01G096000 chr6D 75.393 191 32 9 30 218 158585211 158585388 7.270000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G096000 chr5D 105619029 105621481 2452 True 4530.000000 4530 100.000 1 2453 1 chr5D.!!$R1 2452
1 TraesCS5D01G096000 chr5B 115653544 115657702 4158 True 955.333333 2063 94.867 685 2453 3 chr5B.!!$R1 1768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 578 0.029834 GATGCTGCGCACTAATTGGG 59.97 55.0 5.66 0.0 43.04 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 4474 0.443869 CAGAATGTGGTCCTTTCGCG 59.556 55.0 0.0 0.0 33.57 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.619625 TTTTGCTTTGTTTTGAACCCTTG 57.380 34.783 0.00 0.00 0.00 3.61
46 47 4.543590 TTGCTTTGTTTTGAACCCTTGA 57.456 36.364 0.00 0.00 0.00 3.02
47 48 4.543590 TGCTTTGTTTTGAACCCTTGAA 57.456 36.364 0.00 0.00 0.00 2.69
48 49 5.096443 TGCTTTGTTTTGAACCCTTGAAT 57.904 34.783 0.00 0.00 0.00 2.57
49 50 5.495640 TGCTTTGTTTTGAACCCTTGAATT 58.504 33.333 0.00 0.00 0.00 2.17
50 51 5.353678 TGCTTTGTTTTGAACCCTTGAATTG 59.646 36.000 0.00 0.00 0.00 2.32
51 52 5.220835 GCTTTGTTTTGAACCCTTGAATTGG 60.221 40.000 0.00 0.00 0.00 3.16
80 81 9.303537 CAATTTGTATTGTATGATGAATGTGCA 57.696 29.630 0.00 0.00 37.06 4.57
84 85 9.558396 TTGTATTGTATGATGAATGTGCATAGA 57.442 29.630 0.00 0.00 0.00 1.98
85 86 8.992073 TGTATTGTATGATGAATGTGCATAGAC 58.008 33.333 0.00 0.00 0.00 2.59
86 87 9.212641 GTATTGTATGATGAATGTGCATAGACT 57.787 33.333 0.00 0.00 0.00 3.24
87 88 7.486802 TTGTATGATGAATGTGCATAGACTG 57.513 36.000 0.00 0.00 0.00 3.51
101 102 1.760192 AGACTGCATGGATTTGAGGC 58.240 50.000 0.00 0.00 0.00 4.70
102 103 1.284198 AGACTGCATGGATTTGAGGCT 59.716 47.619 0.00 0.00 0.00 4.58
103 104 1.674962 GACTGCATGGATTTGAGGCTC 59.325 52.381 7.79 7.79 0.00 4.70
104 105 1.030457 CTGCATGGATTTGAGGCTCC 58.970 55.000 12.86 0.00 0.00 4.70
105 106 0.749091 TGCATGGATTTGAGGCTCCG 60.749 55.000 12.86 0.00 34.05 4.63
106 107 2.028130 CATGGATTTGAGGCTCCGC 58.972 57.895 12.86 0.00 34.05 5.54
107 108 0.749091 CATGGATTTGAGGCTCCGCA 60.749 55.000 12.86 0.00 34.05 5.69
108 109 0.184451 ATGGATTTGAGGCTCCGCAT 59.816 50.000 12.86 0.66 34.05 4.73
109 110 0.034186 TGGATTTGAGGCTCCGCATT 60.034 50.000 12.86 0.00 34.05 3.56
110 111 1.106285 GGATTTGAGGCTCCGCATTT 58.894 50.000 12.86 0.00 0.00 2.32
111 112 1.202336 GGATTTGAGGCTCCGCATTTG 60.202 52.381 12.86 0.00 0.00 2.32
112 113 1.745087 GATTTGAGGCTCCGCATTTGA 59.255 47.619 12.86 0.00 0.00 2.69
113 114 1.614996 TTTGAGGCTCCGCATTTGAA 58.385 45.000 12.86 0.00 0.00 2.69
114 115 1.167851 TTGAGGCTCCGCATTTGAAG 58.832 50.000 12.86 0.00 0.00 3.02
115 116 0.036732 TGAGGCTCCGCATTTGAAGT 59.963 50.000 12.86 0.00 0.00 3.01
116 117 1.277842 TGAGGCTCCGCATTTGAAGTA 59.722 47.619 12.86 0.00 0.00 2.24
117 118 2.092968 TGAGGCTCCGCATTTGAAGTAT 60.093 45.455 12.86 0.00 0.00 2.12
118 119 2.289002 GAGGCTCCGCATTTGAAGTATG 59.711 50.000 2.15 0.00 0.00 2.39
119 120 2.017049 GGCTCCGCATTTGAAGTATGT 58.983 47.619 0.00 0.00 0.00 2.29
120 121 2.223340 GGCTCCGCATTTGAAGTATGTG 60.223 50.000 0.00 0.00 34.18 3.21
125 126 4.621068 CGCATTTGAAGTATGTGGATGT 57.379 40.909 0.00 0.00 31.51 3.06
126 127 4.345288 CGCATTTGAAGTATGTGGATGTG 58.655 43.478 0.00 0.00 31.51 3.21
127 128 4.107622 GCATTTGAAGTATGTGGATGTGC 58.892 43.478 0.00 0.00 0.00 4.57
128 129 4.345288 CATTTGAAGTATGTGGATGTGCG 58.655 43.478 0.00 0.00 0.00 5.34
129 130 2.022764 TGAAGTATGTGGATGTGCGG 57.977 50.000 0.00 0.00 0.00 5.69
130 131 1.277842 TGAAGTATGTGGATGTGCGGT 59.722 47.619 0.00 0.00 0.00 5.68
131 132 2.498078 TGAAGTATGTGGATGTGCGGTA 59.502 45.455 0.00 0.00 0.00 4.02
132 133 3.055747 TGAAGTATGTGGATGTGCGGTAA 60.056 43.478 0.00 0.00 0.00 2.85
133 134 2.901249 AGTATGTGGATGTGCGGTAAC 58.099 47.619 0.00 0.00 0.00 2.50
134 135 1.937899 GTATGTGGATGTGCGGTAACC 59.062 52.381 0.00 0.00 0.00 2.85
135 136 0.393808 ATGTGGATGTGCGGTAACCC 60.394 55.000 0.00 0.00 0.00 4.11
136 137 1.003112 GTGGATGTGCGGTAACCCA 60.003 57.895 0.00 0.00 0.00 4.51
137 138 0.393808 GTGGATGTGCGGTAACCCAT 60.394 55.000 0.00 0.00 0.00 4.00
138 139 1.134340 GTGGATGTGCGGTAACCCATA 60.134 52.381 0.00 0.00 0.00 2.74
139 140 1.771854 TGGATGTGCGGTAACCCATAT 59.228 47.619 0.00 0.00 0.00 1.78
140 141 2.151202 GGATGTGCGGTAACCCATATG 58.849 52.381 0.00 0.00 0.00 1.78
141 142 2.224426 GGATGTGCGGTAACCCATATGA 60.224 50.000 3.65 0.00 0.00 2.15
142 143 2.613026 TGTGCGGTAACCCATATGAG 57.387 50.000 3.65 0.00 0.00 2.90
143 144 2.112190 TGTGCGGTAACCCATATGAGA 58.888 47.619 3.65 0.00 0.00 3.27
144 145 2.102420 TGTGCGGTAACCCATATGAGAG 59.898 50.000 3.65 0.00 0.00 3.20
145 146 1.691976 TGCGGTAACCCATATGAGAGG 59.308 52.381 3.65 0.00 0.00 3.69
146 147 1.608283 GCGGTAACCCATATGAGAGGC 60.608 57.143 3.65 0.00 0.00 4.70
147 148 1.971357 CGGTAACCCATATGAGAGGCT 59.029 52.381 3.65 0.00 0.00 4.58
148 149 2.289072 CGGTAACCCATATGAGAGGCTG 60.289 54.545 3.65 0.00 0.00 4.85
149 150 2.706190 GGTAACCCATATGAGAGGCTGT 59.294 50.000 3.65 0.00 0.00 4.40
150 151 3.244249 GGTAACCCATATGAGAGGCTGTC 60.244 52.174 3.65 4.41 0.00 3.51
151 152 1.428869 ACCCATATGAGAGGCTGTCC 58.571 55.000 9.40 0.00 0.00 4.02
153 154 2.180086 ACCCATATGAGAGGCTGTCCTA 59.820 50.000 9.40 4.11 44.46 2.94
154 155 2.564947 CCCATATGAGAGGCTGTCCTAC 59.435 54.545 9.40 0.00 44.46 3.18
155 156 2.230025 CCATATGAGAGGCTGTCCTACG 59.770 54.545 9.40 0.00 44.46 3.51
156 157 1.982660 TATGAGAGGCTGTCCTACGG 58.017 55.000 9.40 0.00 44.46 4.02
157 158 0.033011 ATGAGAGGCTGTCCTACGGT 60.033 55.000 9.40 0.00 44.46 4.83
158 159 0.965866 TGAGAGGCTGTCCTACGGTG 60.966 60.000 9.40 0.00 44.46 4.94
159 160 0.966370 GAGAGGCTGTCCTACGGTGT 60.966 60.000 0.00 0.00 44.46 4.16
160 161 0.966370 AGAGGCTGTCCTACGGTGTC 60.966 60.000 0.00 0.00 44.46 3.67
161 162 1.946475 GAGGCTGTCCTACGGTGTCC 61.946 65.000 0.00 0.00 44.46 4.02
187 188 3.766691 GCCCGGACGTGCCTAAGA 61.767 66.667 0.73 0.00 0.00 2.10
188 189 2.494918 CCCGGACGTGCCTAAGAG 59.505 66.667 0.73 0.00 0.00 2.85
189 190 2.494918 CCGGACGTGCCTAAGAGG 59.505 66.667 0.00 0.00 38.80 3.69
200 201 1.558233 CCTAAGAGGCGTATAGGGGG 58.442 60.000 9.02 0.00 33.92 5.40
201 202 0.896226 CTAAGAGGCGTATAGGGGGC 59.104 60.000 0.00 0.00 0.00 5.80
205 206 3.236233 GGCGTATAGGGGGCCGAA 61.236 66.667 0.00 0.00 37.06 4.30
206 207 2.590114 GGCGTATAGGGGGCCGAAT 61.590 63.158 0.00 0.00 37.06 3.34
207 208 1.373812 GCGTATAGGGGGCCGAATT 59.626 57.895 0.00 0.00 0.00 2.17
208 209 0.250597 GCGTATAGGGGGCCGAATTT 60.251 55.000 0.00 0.00 0.00 1.82
209 210 1.519408 CGTATAGGGGGCCGAATTTG 58.481 55.000 0.00 0.00 0.00 2.32
210 211 1.244816 GTATAGGGGGCCGAATTTGC 58.755 55.000 0.00 0.00 0.00 3.68
217 218 4.889427 GCCGAATTTGCCAAGTCC 57.111 55.556 0.00 0.00 0.00 3.85
218 219 1.963679 GCCGAATTTGCCAAGTCCA 59.036 52.632 0.00 0.00 0.00 4.02
219 220 0.109132 GCCGAATTTGCCAAGTCCAG 60.109 55.000 0.00 0.00 0.00 3.86
220 221 0.109132 CCGAATTTGCCAAGTCCAGC 60.109 55.000 0.00 0.00 0.00 4.85
221 222 0.454957 CGAATTTGCCAAGTCCAGCG 60.455 55.000 0.00 0.00 0.00 5.18
222 223 0.109132 GAATTTGCCAAGTCCAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
223 224 2.158561 AATTTGCCAAGTCCAGCGGC 62.159 55.000 0.00 0.00 46.43 6.53
224 225 3.790416 TTTGCCAAGTCCAGCGGCT 62.790 57.895 0.00 0.00 46.39 5.52
225 226 3.790416 TTGCCAAGTCCAGCGGCTT 62.790 57.895 0.00 0.00 46.39 4.35
226 227 2.985847 GCCAAGTCCAGCGGCTTT 60.986 61.111 0.00 0.00 42.78 3.51
227 228 2.956987 CCAAGTCCAGCGGCTTTG 59.043 61.111 0.00 2.10 0.00 2.77
228 229 2.629656 CCAAGTCCAGCGGCTTTGG 61.630 63.158 14.76 14.76 37.04 3.28
229 230 1.600636 CAAGTCCAGCGGCTTTGGA 60.601 57.895 6.85 6.85 42.30 3.53
230 231 0.962356 CAAGTCCAGCGGCTTTGGAT 60.962 55.000 13.33 0.00 45.85 3.41
231 232 0.962356 AAGTCCAGCGGCTTTGGATG 60.962 55.000 13.33 0.00 45.85 3.51
232 233 2.751436 TCCAGCGGCTTTGGATGC 60.751 61.111 6.85 0.00 39.74 3.91
233 234 2.753043 CCAGCGGCTTTGGATGCT 60.753 61.111 0.00 0.00 37.96 3.79
234 235 2.768492 CCAGCGGCTTTGGATGCTC 61.768 63.158 0.00 0.00 37.96 4.26
235 236 1.748122 CAGCGGCTTTGGATGCTCT 60.748 57.895 0.00 0.00 34.99 4.09
236 237 0.462581 CAGCGGCTTTGGATGCTCTA 60.463 55.000 0.00 0.00 34.99 2.43
237 238 0.253044 AGCGGCTTTGGATGCTCTAA 59.747 50.000 0.00 0.00 30.37 2.10
238 239 1.133976 AGCGGCTTTGGATGCTCTAAT 60.134 47.619 0.00 0.00 30.37 1.73
239 240 1.678101 GCGGCTTTGGATGCTCTAATT 59.322 47.619 0.00 0.00 0.00 1.40
240 241 2.287248 GCGGCTTTGGATGCTCTAATTC 60.287 50.000 0.00 0.00 0.00 2.17
241 242 3.209410 CGGCTTTGGATGCTCTAATTCT 58.791 45.455 0.00 0.00 0.00 2.40
242 243 4.380531 CGGCTTTGGATGCTCTAATTCTA 58.619 43.478 0.00 0.00 0.00 2.10
243 244 4.816385 CGGCTTTGGATGCTCTAATTCTAA 59.184 41.667 0.00 0.00 0.00 2.10
244 245 5.471456 CGGCTTTGGATGCTCTAATTCTAAT 59.529 40.000 0.00 0.00 0.00 1.73
245 246 6.567321 CGGCTTTGGATGCTCTAATTCTAATG 60.567 42.308 0.00 0.00 0.00 1.90
246 247 6.294397 GGCTTTGGATGCTCTAATTCTAATGG 60.294 42.308 0.00 0.00 0.00 3.16
247 248 6.294397 GCTTTGGATGCTCTAATTCTAATGGG 60.294 42.308 0.00 0.00 0.00 4.00
248 249 4.655963 TGGATGCTCTAATTCTAATGGGC 58.344 43.478 0.00 0.00 0.00 5.36
249 250 4.013050 GGATGCTCTAATTCTAATGGGCC 58.987 47.826 0.00 0.00 0.00 5.80
250 251 3.508845 TGCTCTAATTCTAATGGGCCC 57.491 47.619 17.59 17.59 0.00 5.80
251 252 3.056080 TGCTCTAATTCTAATGGGCCCT 58.944 45.455 25.70 5.93 0.00 5.19
252 253 3.181440 TGCTCTAATTCTAATGGGCCCTG 60.181 47.826 25.70 10.77 0.00 4.45
253 254 3.073062 GCTCTAATTCTAATGGGCCCTGA 59.927 47.826 25.70 13.07 0.00 3.86
254 255 4.263683 GCTCTAATTCTAATGGGCCCTGAT 60.264 45.833 25.70 11.68 0.00 2.90
255 256 5.045578 GCTCTAATTCTAATGGGCCCTGATA 60.046 44.000 25.70 12.24 0.00 2.15
256 257 6.522459 GCTCTAATTCTAATGGGCCCTGATAA 60.522 42.308 25.70 11.35 0.00 1.75
257 258 7.020827 TCTAATTCTAATGGGCCCTGATAAG 57.979 40.000 25.70 13.16 0.00 1.73
258 259 5.669798 AATTCTAATGGGCCCTGATAAGT 57.330 39.130 25.70 3.30 0.00 2.24
259 260 6.780198 AATTCTAATGGGCCCTGATAAGTA 57.220 37.500 25.70 4.52 0.00 2.24
260 261 5.562298 TTCTAATGGGCCCTGATAAGTAC 57.438 43.478 25.70 0.00 0.00 2.73
261 262 3.908103 TCTAATGGGCCCTGATAAGTACC 59.092 47.826 25.70 0.00 0.00 3.34
262 263 2.206322 ATGGGCCCTGATAAGTACCA 57.794 50.000 25.70 0.00 0.00 3.25
263 264 2.206322 TGGGCCCTGATAAGTACCAT 57.794 50.000 25.70 0.00 0.00 3.55
264 265 3.354233 TGGGCCCTGATAAGTACCATA 57.646 47.619 25.70 0.00 0.00 2.74
265 266 3.881871 TGGGCCCTGATAAGTACCATAT 58.118 45.455 25.70 0.00 0.00 1.78
266 267 3.587061 TGGGCCCTGATAAGTACCATATG 59.413 47.826 25.70 0.00 0.00 1.78
267 268 3.587506 GGGCCCTGATAAGTACCATATGT 59.412 47.826 17.04 0.00 0.00 2.29
268 269 4.565652 GGGCCCTGATAAGTACCATATGTG 60.566 50.000 17.04 0.00 0.00 3.21
269 270 4.041691 GGCCCTGATAAGTACCATATGTGT 59.958 45.833 1.24 2.24 0.00 3.72
270 271 4.997395 GCCCTGATAAGTACCATATGTGTG 59.003 45.833 1.24 0.00 0.00 3.82
271 272 5.221641 GCCCTGATAAGTACCATATGTGTGA 60.222 44.000 1.24 0.00 0.00 3.58
272 273 6.223852 CCCTGATAAGTACCATATGTGTGAC 58.776 44.000 1.24 0.00 0.00 3.67
273 274 6.183360 CCCTGATAAGTACCATATGTGTGACA 60.183 42.308 1.24 0.00 0.00 3.58
274 275 6.701841 CCTGATAAGTACCATATGTGTGACAC 59.298 42.308 9.14 9.14 34.56 3.67
275 276 6.270064 TGATAAGTACCATATGTGTGACACG 58.730 40.000 11.51 0.00 37.14 4.49
276 277 4.794278 AAGTACCATATGTGTGACACGA 57.206 40.909 11.51 1.68 37.14 4.35
277 278 4.794278 AGTACCATATGTGTGACACGAA 57.206 40.909 11.51 1.56 37.14 3.85
278 279 4.491676 AGTACCATATGTGTGACACGAAC 58.508 43.478 11.51 1.67 37.14 3.95
279 280 3.394674 ACCATATGTGTGACACGAACA 57.605 42.857 11.51 1.00 37.14 3.18
280 281 3.064207 ACCATATGTGTGACACGAACAC 58.936 45.455 11.51 0.00 46.55 3.32
285 286 2.316237 TGTGACACGAACACATGGC 58.684 52.632 0.22 0.00 42.20 4.40
286 287 0.462759 TGTGACACGAACACATGGCA 60.463 50.000 0.22 0.00 42.20 4.92
287 288 0.660488 GTGACACGAACACATGGCAA 59.340 50.000 0.00 0.00 35.02 4.52
288 289 0.660488 TGACACGAACACATGGCAAC 59.340 50.000 0.00 0.00 28.30 4.17
289 290 0.944386 GACACGAACACATGGCAACT 59.056 50.000 0.00 0.00 37.61 3.16
290 291 0.944386 ACACGAACACATGGCAACTC 59.056 50.000 0.00 0.00 37.61 3.01
291 292 0.238289 CACGAACACATGGCAACTCC 59.762 55.000 0.00 0.00 37.61 3.85
292 293 1.227999 ACGAACACATGGCAACTCCG 61.228 55.000 0.00 0.00 37.80 4.63
293 294 0.948623 CGAACACATGGCAACTCCGA 60.949 55.000 0.00 0.00 37.80 4.55
294 295 1.234821 GAACACATGGCAACTCCGAA 58.765 50.000 0.00 0.00 37.80 4.30
295 296 1.812571 GAACACATGGCAACTCCGAAT 59.187 47.619 0.00 0.00 37.80 3.34
296 297 1.167851 ACACATGGCAACTCCGAATG 58.832 50.000 0.00 0.00 37.80 2.67
297 298 1.167851 CACATGGCAACTCCGAATGT 58.832 50.000 0.00 0.00 37.80 2.71
298 299 1.131126 CACATGGCAACTCCGAATGTC 59.869 52.381 0.00 0.00 37.80 3.06
299 300 1.003580 ACATGGCAACTCCGAATGTCT 59.996 47.619 0.00 0.00 37.80 3.41
300 301 2.086869 CATGGCAACTCCGAATGTCTT 58.913 47.619 0.00 0.00 37.80 3.01
301 302 2.270352 TGGCAACTCCGAATGTCTTT 57.730 45.000 0.00 0.00 37.80 2.52
302 303 2.582052 TGGCAACTCCGAATGTCTTTT 58.418 42.857 0.00 0.00 37.80 2.27
303 304 3.745799 TGGCAACTCCGAATGTCTTTTA 58.254 40.909 0.00 0.00 37.80 1.52
304 305 4.331968 TGGCAACTCCGAATGTCTTTTAT 58.668 39.130 0.00 0.00 37.80 1.40
305 306 4.155826 TGGCAACTCCGAATGTCTTTTATG 59.844 41.667 0.00 0.00 37.80 1.90
306 307 4.394920 GGCAACTCCGAATGTCTTTTATGA 59.605 41.667 0.00 0.00 0.00 2.15
307 308 5.324697 GCAACTCCGAATGTCTTTTATGAC 58.675 41.667 0.00 0.00 37.47 3.06
320 321 8.958119 TGTCTTTTATGACAAGTTTAGTGACT 57.042 30.769 0.00 0.00 43.08 3.41
321 322 9.391006 TGTCTTTTATGACAAGTTTAGTGACTT 57.609 29.630 0.00 0.00 43.08 3.01
334 335 9.950496 AAGTTTAGTGACTTGATGATGATAACT 57.050 29.630 0.00 0.00 38.39 2.24
365 366 9.834628 TTATTAAGTATGGCAACTTCTTTTTCG 57.165 29.630 15.15 0.00 40.20 3.46
366 367 4.766404 AGTATGGCAACTTCTTTTTCGG 57.234 40.909 0.00 0.00 37.61 4.30
367 368 4.394729 AGTATGGCAACTTCTTTTTCGGA 58.605 39.130 0.00 0.00 37.61 4.55
368 369 5.010282 AGTATGGCAACTTCTTTTTCGGAT 58.990 37.500 0.00 0.00 37.61 4.18
369 370 3.641437 TGGCAACTTCTTTTTCGGATG 57.359 42.857 0.00 0.00 37.61 3.51
370 371 3.218453 TGGCAACTTCTTTTTCGGATGA 58.782 40.909 0.00 0.00 37.61 2.92
371 372 3.826157 TGGCAACTTCTTTTTCGGATGAT 59.174 39.130 0.00 0.00 37.61 2.45
372 373 4.168760 GGCAACTTCTTTTTCGGATGATG 58.831 43.478 0.00 0.00 0.00 3.07
373 374 4.082787 GGCAACTTCTTTTTCGGATGATGA 60.083 41.667 0.00 0.00 0.00 2.92
374 375 5.460646 GCAACTTCTTTTTCGGATGATGAA 58.539 37.500 0.00 0.00 0.00 2.57
375 376 6.095377 GCAACTTCTTTTTCGGATGATGAAT 58.905 36.000 0.00 0.00 0.00 2.57
376 377 6.587608 GCAACTTCTTTTTCGGATGATGAATT 59.412 34.615 0.00 0.00 0.00 2.17
377 378 7.116805 GCAACTTCTTTTTCGGATGATGAATTT 59.883 33.333 0.00 0.00 0.00 1.82
378 379 8.981647 CAACTTCTTTTTCGGATGATGAATTTT 58.018 29.630 0.00 0.00 0.00 1.82
380 381 9.846248 ACTTCTTTTTCGGATGATGAATTTTAG 57.154 29.630 0.00 0.00 0.00 1.85
381 382 9.846248 CTTCTTTTTCGGATGATGAATTTTAGT 57.154 29.630 0.00 0.00 0.00 2.24
431 432 8.891671 AACTTTAGTTGTAAATAACGTCAGGA 57.108 30.769 0.00 0.00 36.80 3.86
432 433 8.302965 ACTTTAGTTGTAAATAACGTCAGGAC 57.697 34.615 0.00 0.00 35.73 3.85
433 434 7.386025 ACTTTAGTTGTAAATAACGTCAGGACC 59.614 37.037 0.00 0.00 35.73 4.46
434 435 4.240096 AGTTGTAAATAACGTCAGGACCG 58.760 43.478 0.00 0.00 35.73 4.79
435 436 4.022068 AGTTGTAAATAACGTCAGGACCGA 60.022 41.667 0.00 0.00 35.73 4.69
436 437 4.517952 TGTAAATAACGTCAGGACCGAA 57.482 40.909 0.00 0.00 0.00 4.30
437 438 4.880759 TGTAAATAACGTCAGGACCGAAA 58.119 39.130 0.00 0.00 0.00 3.46
438 439 4.685628 TGTAAATAACGTCAGGACCGAAAC 59.314 41.667 0.00 0.00 0.00 2.78
439 440 1.986698 ATAACGTCAGGACCGAAACG 58.013 50.000 12.78 12.78 40.77 3.60
440 441 0.664166 TAACGTCAGGACCGAAACGC 60.664 55.000 13.87 0.00 38.64 4.84
441 442 2.049433 CGTCAGGACCGAAACGCT 60.049 61.111 3.90 0.00 0.00 5.07
442 443 1.663702 CGTCAGGACCGAAACGCTT 60.664 57.895 3.90 0.00 0.00 4.68
443 444 1.219522 CGTCAGGACCGAAACGCTTT 61.220 55.000 3.90 0.00 0.00 3.51
444 445 0.234884 GTCAGGACCGAAACGCTTTG 59.765 55.000 0.00 0.00 0.00 2.77
445 446 0.179067 TCAGGACCGAAACGCTTTGT 60.179 50.000 0.00 0.00 0.00 2.83
446 447 0.041312 CAGGACCGAAACGCTTTGTG 60.041 55.000 0.00 0.00 0.00 3.33
447 448 1.370051 GGACCGAAACGCTTTGTGC 60.370 57.895 0.00 0.00 38.57 4.57
448 449 1.353804 GACCGAAACGCTTTGTGCA 59.646 52.632 0.00 0.00 43.06 4.57
449 450 0.928451 GACCGAAACGCTTTGTGCAC 60.928 55.000 10.75 10.75 43.06 4.57
450 451 1.063327 CCGAAACGCTTTGTGCACA 59.937 52.632 17.42 17.42 43.06 4.57
451 452 1.199852 CCGAAACGCTTTGTGCACAC 61.200 55.000 21.56 7.52 43.06 3.82
452 453 1.520133 CGAAACGCTTTGTGCACACG 61.520 55.000 21.56 22.00 43.06 4.49
453 454 0.522495 GAAACGCTTTGTGCACACGT 60.522 50.000 23.44 23.44 43.06 4.49
454 455 0.796491 AAACGCTTTGTGCACACGTG 60.796 50.000 27.78 24.29 43.06 4.49
455 456 1.917782 AACGCTTTGTGCACACGTGT 61.918 50.000 27.78 24.84 43.06 4.49
467 468 2.526304 ACACGTGTGACACTTAGCAT 57.474 45.000 22.71 0.00 31.34 3.79
468 469 2.833794 ACACGTGTGACACTTAGCATT 58.166 42.857 22.71 0.00 31.34 3.56
469 470 3.202906 ACACGTGTGACACTTAGCATTT 58.797 40.909 22.71 0.00 31.34 2.32
470 471 3.002246 ACACGTGTGACACTTAGCATTTG 59.998 43.478 22.71 0.00 31.34 2.32
471 472 2.548057 ACGTGTGACACTTAGCATTTGG 59.452 45.455 14.42 0.00 31.34 3.28
472 473 2.095768 CGTGTGACACTTAGCATTTGGG 60.096 50.000 14.42 0.00 31.34 4.12
473 474 1.885887 TGTGACACTTAGCATTTGGGC 59.114 47.619 7.20 0.00 0.00 5.36
475 476 3.244735 TGTGACACTTAGCATTTGGGCTA 60.245 43.478 7.20 0.00 43.70 3.93
483 484 3.160679 AGCATTTGGGCTAACAGAAGT 57.839 42.857 0.00 0.00 43.70 3.01
484 485 2.821969 AGCATTTGGGCTAACAGAAGTG 59.178 45.455 0.00 0.00 43.70 3.16
485 486 2.819608 GCATTTGGGCTAACAGAAGTGA 59.180 45.455 0.00 0.00 0.00 3.41
486 487 3.255642 GCATTTGGGCTAACAGAAGTGAA 59.744 43.478 0.00 0.00 0.00 3.18
487 488 4.082026 GCATTTGGGCTAACAGAAGTGAAT 60.082 41.667 0.00 0.00 0.00 2.57
488 489 5.404946 CATTTGGGCTAACAGAAGTGAATG 58.595 41.667 0.00 0.00 0.00 2.67
489 490 2.436417 TGGGCTAACAGAAGTGAATGC 58.564 47.619 0.00 0.00 0.00 3.56
490 491 2.040278 TGGGCTAACAGAAGTGAATGCT 59.960 45.455 0.00 0.00 0.00 3.79
491 492 3.263170 TGGGCTAACAGAAGTGAATGCTA 59.737 43.478 0.00 0.00 0.00 3.49
492 493 4.080356 TGGGCTAACAGAAGTGAATGCTAT 60.080 41.667 0.00 0.00 0.00 2.97
493 494 4.274459 GGGCTAACAGAAGTGAATGCTATG 59.726 45.833 0.00 0.00 0.00 2.23
494 495 5.118990 GGCTAACAGAAGTGAATGCTATGA 58.881 41.667 0.00 0.00 0.00 2.15
495 496 5.762218 GGCTAACAGAAGTGAATGCTATGAT 59.238 40.000 0.00 0.00 0.00 2.45
496 497 6.073331 GGCTAACAGAAGTGAATGCTATGATC 60.073 42.308 0.00 0.00 0.00 2.92
497 498 6.481313 GCTAACAGAAGTGAATGCTATGATCA 59.519 38.462 0.00 0.00 0.00 2.92
498 499 7.011763 GCTAACAGAAGTGAATGCTATGATCAA 59.988 37.037 0.00 0.00 0.00 2.57
499 500 7.692460 AACAGAAGTGAATGCTATGATCAAA 57.308 32.000 0.00 0.00 0.00 2.69
500 501 7.692460 ACAGAAGTGAATGCTATGATCAAAA 57.308 32.000 0.00 0.00 0.00 2.44
501 502 8.289939 ACAGAAGTGAATGCTATGATCAAAAT 57.710 30.769 0.00 0.00 0.00 1.82
502 503 8.746530 ACAGAAGTGAATGCTATGATCAAAATT 58.253 29.630 0.00 0.00 0.00 1.82
503 504 9.582431 CAGAAGTGAATGCTATGATCAAAATTT 57.418 29.630 0.00 0.00 0.00 1.82
504 505 9.798994 AGAAGTGAATGCTATGATCAAAATTTC 57.201 29.630 0.00 0.96 0.00 2.17
505 506 9.798994 GAAGTGAATGCTATGATCAAAATTTCT 57.201 29.630 0.00 0.00 0.00 2.52
506 507 9.582431 AAGTGAATGCTATGATCAAAATTTCTG 57.418 29.630 0.00 0.00 0.00 3.02
507 508 7.705325 AGTGAATGCTATGATCAAAATTTCTGC 59.295 33.333 0.00 0.00 0.00 4.26
508 509 6.982141 TGAATGCTATGATCAAAATTTCTGCC 59.018 34.615 0.00 0.00 0.00 4.85
509 510 5.918426 TGCTATGATCAAAATTTCTGCCA 57.082 34.783 0.00 0.00 0.00 4.92
510 511 5.898174 TGCTATGATCAAAATTTCTGCCAG 58.102 37.500 0.00 0.00 0.00 4.85
511 512 5.419788 TGCTATGATCAAAATTTCTGCCAGT 59.580 36.000 0.00 0.00 0.00 4.00
512 513 6.602803 TGCTATGATCAAAATTTCTGCCAGTA 59.397 34.615 0.00 0.00 0.00 2.74
513 514 7.137426 GCTATGATCAAAATTTCTGCCAGTAG 58.863 38.462 0.00 0.00 0.00 2.57
514 515 5.314923 TGATCAAAATTTCTGCCAGTAGC 57.685 39.130 0.00 0.00 44.14 3.58
515 516 4.158394 TGATCAAAATTTCTGCCAGTAGCC 59.842 41.667 0.00 0.00 42.71 3.93
516 517 3.495331 TCAAAATTTCTGCCAGTAGCCA 58.505 40.909 0.00 0.00 42.71 4.75
517 518 4.088634 TCAAAATTTCTGCCAGTAGCCAT 58.911 39.130 0.00 0.00 42.71 4.40
518 519 4.158394 TCAAAATTTCTGCCAGTAGCCATC 59.842 41.667 0.00 0.00 42.71 3.51
519 520 3.370840 AATTTCTGCCAGTAGCCATCA 57.629 42.857 0.00 0.00 42.71 3.07
520 521 2.113860 TTTCTGCCAGTAGCCATCAC 57.886 50.000 0.00 0.00 42.71 3.06
521 522 0.253044 TTCTGCCAGTAGCCATCACC 59.747 55.000 0.00 0.00 42.71 4.02
522 523 0.909133 TCTGCCAGTAGCCATCACCA 60.909 55.000 0.00 0.00 42.71 4.17
523 524 0.035152 CTGCCAGTAGCCATCACCAA 60.035 55.000 0.00 0.00 42.71 3.67
524 525 0.625316 TGCCAGTAGCCATCACCAAT 59.375 50.000 0.00 0.00 42.71 3.16
525 526 1.005805 TGCCAGTAGCCATCACCAATT 59.994 47.619 0.00 0.00 42.71 2.32
526 527 1.406539 GCCAGTAGCCATCACCAATTG 59.593 52.381 0.00 0.00 34.35 2.32
527 528 2.026641 CCAGTAGCCATCACCAATTGG 58.973 52.381 23.31 23.31 42.17 3.16
528 529 2.026641 CAGTAGCCATCACCAATTGGG 58.973 52.381 27.89 16.62 44.81 4.12
529 530 0.746659 GTAGCCATCACCAATTGGGC 59.253 55.000 27.89 20.00 44.92 5.36
530 531 2.495866 GCCATCACCAATTGGGCG 59.504 61.111 27.89 18.21 42.05 6.13
531 532 2.051518 GCCATCACCAATTGGGCGA 61.052 57.895 27.89 22.57 42.05 5.54
532 533 1.394266 GCCATCACCAATTGGGCGAT 61.394 55.000 27.89 23.66 42.05 4.58
533 534 1.113788 CCATCACCAATTGGGCGATT 58.886 50.000 27.89 3.92 42.05 3.34
534 535 1.202440 CCATCACCAATTGGGCGATTG 60.202 52.381 27.89 19.12 42.05 2.67
540 541 2.282701 CAATTGGGCGATTGGTTCTG 57.717 50.000 0.00 0.00 34.20 3.02
541 542 1.818060 CAATTGGGCGATTGGTTCTGA 59.182 47.619 0.00 0.00 34.20 3.27
542 543 1.755179 ATTGGGCGATTGGTTCTGAG 58.245 50.000 0.00 0.00 0.00 3.35
543 544 0.400213 TTGGGCGATTGGTTCTGAGT 59.600 50.000 0.00 0.00 0.00 3.41
544 545 0.036388 TGGGCGATTGGTTCTGAGTC 60.036 55.000 0.00 0.00 0.00 3.36
545 546 0.250513 GGGCGATTGGTTCTGAGTCT 59.749 55.000 0.00 0.00 0.00 3.24
546 547 1.646189 GGCGATTGGTTCTGAGTCTC 58.354 55.000 0.00 0.00 0.00 3.36
547 548 1.066858 GGCGATTGGTTCTGAGTCTCA 60.067 52.381 1.78 1.78 0.00 3.27
548 549 1.996191 GCGATTGGTTCTGAGTCTCAC 59.004 52.381 0.00 0.00 0.00 3.51
549 550 2.353208 GCGATTGGTTCTGAGTCTCACT 60.353 50.000 0.00 0.00 0.00 3.41
550 551 3.506810 CGATTGGTTCTGAGTCTCACTC 58.493 50.000 0.00 0.00 45.26 3.51
561 562 4.145876 GAGTCTCACTCGCTAGATGATG 57.854 50.000 0.00 0.00 35.28 3.07
562 563 2.293122 AGTCTCACTCGCTAGATGATGC 59.707 50.000 0.00 0.00 0.00 3.91
563 564 2.293122 GTCTCACTCGCTAGATGATGCT 59.707 50.000 0.00 0.00 0.00 3.79
564 565 2.292845 TCTCACTCGCTAGATGATGCTG 59.707 50.000 0.00 0.00 0.00 4.41
565 566 1.138337 CACTCGCTAGATGATGCTGC 58.862 55.000 0.00 0.00 0.00 5.25
566 567 0.318529 ACTCGCTAGATGATGCTGCG 60.319 55.000 0.00 0.00 46.71 5.18
567 568 1.615989 CTCGCTAGATGATGCTGCGC 61.616 60.000 0.00 0.00 45.24 6.09
568 569 1.952635 CGCTAGATGATGCTGCGCA 60.953 57.895 10.98 10.98 44.86 6.09
569 570 1.568514 GCTAGATGATGCTGCGCAC 59.431 57.895 5.66 4.25 43.04 5.34
570 571 0.879400 GCTAGATGATGCTGCGCACT 60.879 55.000 5.66 2.15 43.04 4.40
571 572 1.603931 GCTAGATGATGCTGCGCACTA 60.604 52.381 5.66 3.46 43.04 2.74
572 573 2.747436 CTAGATGATGCTGCGCACTAA 58.253 47.619 5.66 0.00 43.04 2.24
573 574 2.251409 AGATGATGCTGCGCACTAAT 57.749 45.000 5.66 0.00 43.04 1.73
574 575 2.569059 AGATGATGCTGCGCACTAATT 58.431 42.857 5.66 0.00 43.04 1.40
575 576 2.289820 AGATGATGCTGCGCACTAATTG 59.710 45.455 5.66 0.00 43.04 2.32
576 577 0.734309 TGATGCTGCGCACTAATTGG 59.266 50.000 5.66 0.00 43.04 3.16
577 578 0.029834 GATGCTGCGCACTAATTGGG 59.970 55.000 5.66 0.00 43.04 4.12
578 579 0.394216 ATGCTGCGCACTAATTGGGA 60.394 50.000 5.66 0.00 43.04 4.37
579 580 0.394216 TGCTGCGCACTAATTGGGAT 60.394 50.000 5.66 0.00 40.70 3.85
580 581 0.740737 GCTGCGCACTAATTGGGATT 59.259 50.000 5.66 0.00 40.70 3.01
581 582 1.946768 GCTGCGCACTAATTGGGATTA 59.053 47.619 5.66 0.00 40.70 1.75
582 583 2.357637 GCTGCGCACTAATTGGGATTAA 59.642 45.455 5.66 0.00 40.70 1.40
583 584 3.548818 GCTGCGCACTAATTGGGATTAAG 60.549 47.826 5.66 0.00 40.70 1.85
584 585 2.948979 TGCGCACTAATTGGGATTAAGG 59.051 45.455 5.66 0.00 40.70 2.69
585 586 3.211045 GCGCACTAATTGGGATTAAGGA 58.789 45.455 0.30 0.00 40.70 3.36
586 587 3.251004 GCGCACTAATTGGGATTAAGGAG 59.749 47.826 0.30 0.00 40.70 3.69
587 588 4.703897 CGCACTAATTGGGATTAAGGAGA 58.296 43.478 0.00 0.00 40.70 3.71
588 589 5.308825 CGCACTAATTGGGATTAAGGAGAT 58.691 41.667 0.00 0.00 40.70 2.75
589 590 6.464222 CGCACTAATTGGGATTAAGGAGATA 58.536 40.000 0.00 0.00 40.70 1.98
590 591 6.369065 CGCACTAATTGGGATTAAGGAGATAC 59.631 42.308 0.00 0.00 40.70 2.24
591 592 7.224297 GCACTAATTGGGATTAAGGAGATACA 58.776 38.462 0.00 0.00 0.00 2.29
592 593 7.719633 GCACTAATTGGGATTAAGGAGATACAA 59.280 37.037 0.00 0.00 0.00 2.41
593 594 9.277783 CACTAATTGGGATTAAGGAGATACAAG 57.722 37.037 0.00 0.00 0.00 3.16
594 595 9.225682 ACTAATTGGGATTAAGGAGATACAAGA 57.774 33.333 0.00 0.00 0.00 3.02
595 596 9.717942 CTAATTGGGATTAAGGAGATACAAGAG 57.282 37.037 0.00 0.00 0.00 2.85
596 597 7.937700 ATTGGGATTAAGGAGATACAAGAGA 57.062 36.000 0.00 0.00 0.00 3.10
597 598 7.749377 TTGGGATTAAGGAGATACAAGAGAA 57.251 36.000 0.00 0.00 0.00 2.87
598 599 7.366847 TGGGATTAAGGAGATACAAGAGAAG 57.633 40.000 0.00 0.00 0.00 2.85
599 600 6.183361 TGGGATTAAGGAGATACAAGAGAAGC 60.183 42.308 0.00 0.00 0.00 3.86
600 601 6.042666 GGGATTAAGGAGATACAAGAGAAGCT 59.957 42.308 0.00 0.00 0.00 3.74
601 602 6.928492 GGATTAAGGAGATACAAGAGAAGCTG 59.072 42.308 0.00 0.00 0.00 4.24
602 603 3.817709 AGGAGATACAAGAGAAGCTGC 57.182 47.619 0.00 0.00 0.00 5.25
603 604 2.100584 AGGAGATACAAGAGAAGCTGCG 59.899 50.000 0.00 0.00 0.00 5.18
604 605 2.099921 GGAGATACAAGAGAAGCTGCGA 59.900 50.000 0.00 0.00 0.00 5.10
605 606 3.371168 GAGATACAAGAGAAGCTGCGAG 58.629 50.000 0.00 0.00 0.00 5.03
606 607 2.757868 AGATACAAGAGAAGCTGCGAGT 59.242 45.455 0.00 0.00 0.00 4.18
607 608 3.948473 AGATACAAGAGAAGCTGCGAGTA 59.052 43.478 0.00 0.00 0.00 2.59
608 609 2.645730 ACAAGAGAAGCTGCGAGTAG 57.354 50.000 0.00 0.00 0.00 2.57
609 610 1.889829 ACAAGAGAAGCTGCGAGTAGT 59.110 47.619 0.00 0.00 0.00 2.73
610 611 2.094957 ACAAGAGAAGCTGCGAGTAGTC 60.095 50.000 0.00 0.00 0.00 2.59
612 613 0.248296 GAGAAGCTGCGAGTAGTCGG 60.248 60.000 20.94 6.95 46.91 4.79
613 614 0.677098 AGAAGCTGCGAGTAGTCGGA 60.677 55.000 20.94 17.46 46.91 4.55
614 615 0.170561 GAAGCTGCGAGTAGTCGGAA 59.829 55.000 20.94 0.00 46.79 4.30
615 616 0.109226 AAGCTGCGAGTAGTCGGAAC 60.109 55.000 20.94 13.92 46.79 3.62
616 617 0.961358 AGCTGCGAGTAGTCGGAACT 60.961 55.000 20.94 15.99 46.79 3.01
617 618 0.523757 GCTGCGAGTAGTCGGAACTC 60.524 60.000 20.94 7.11 46.79 3.01
618 619 1.088306 CTGCGAGTAGTCGGAACTCT 58.912 55.000 20.94 0.00 46.79 3.24
619 620 2.277969 CTGCGAGTAGTCGGAACTCTA 58.722 52.381 20.94 0.00 46.79 2.43
620 621 2.005451 TGCGAGTAGTCGGAACTCTAC 58.995 52.381 20.94 2.88 44.37 2.59
621 622 1.005137 GCGAGTAGTCGGAACTCTACG 60.005 57.143 20.94 0.00 46.91 3.51
622 623 1.592081 CGAGTAGTCGGAACTCTACGG 59.408 57.143 12.29 0.00 42.87 4.02
623 624 2.626840 GAGTAGTCGGAACTCTACGGT 58.373 52.381 3.18 0.00 40.21 4.83
624 625 3.006247 GAGTAGTCGGAACTCTACGGTT 58.994 50.000 3.18 0.00 40.21 4.44
625 626 3.416156 AGTAGTCGGAACTCTACGGTTT 58.584 45.455 0.00 0.00 40.69 3.27
626 627 4.579869 AGTAGTCGGAACTCTACGGTTTA 58.420 43.478 0.00 0.00 40.69 2.01
627 628 5.003804 AGTAGTCGGAACTCTACGGTTTAA 58.996 41.667 0.00 0.00 40.69 1.52
628 629 4.853924 AGTCGGAACTCTACGGTTTAAA 57.146 40.909 0.00 0.00 0.00 1.52
629 630 4.550422 AGTCGGAACTCTACGGTTTAAAC 58.450 43.478 9.98 9.98 0.00 2.01
630 631 4.037923 AGTCGGAACTCTACGGTTTAAACA 59.962 41.667 19.57 0.00 0.00 2.83
631 632 4.148871 GTCGGAACTCTACGGTTTAAACAC 59.851 45.833 19.57 8.42 0.00 3.32
632 633 3.429881 CGGAACTCTACGGTTTAAACACC 59.570 47.826 19.57 3.45 0.00 4.16
633 634 4.635223 GGAACTCTACGGTTTAAACACCT 58.365 43.478 19.57 4.10 34.22 4.00
634 635 5.059161 GGAACTCTACGGTTTAAACACCTT 58.941 41.667 19.57 0.77 34.22 3.50
635 636 5.049886 GGAACTCTACGGTTTAAACACCTTG 60.050 44.000 19.57 7.58 34.22 3.61
636 637 3.811497 ACTCTACGGTTTAAACACCTTGC 59.189 43.478 19.57 0.73 34.22 4.01
637 638 4.062991 CTCTACGGTTTAAACACCTTGCT 58.937 43.478 19.57 0.00 34.22 3.91
638 639 4.060205 TCTACGGTTTAAACACCTTGCTC 58.940 43.478 19.57 0.00 34.22 4.26
639 640 1.600485 ACGGTTTAAACACCTTGCTCG 59.400 47.619 19.57 12.89 34.22 5.03
640 641 1.662026 CGGTTTAAACACCTTGCTCGC 60.662 52.381 19.57 0.00 34.22 5.03
641 642 1.335597 GGTTTAAACACCTTGCTCGCC 60.336 52.381 19.57 0.00 33.50 5.54
642 643 1.335496 GTTTAAACACCTTGCTCGCCA 59.665 47.619 13.51 0.00 0.00 5.69
643 644 1.904287 TTAAACACCTTGCTCGCCAT 58.096 45.000 0.00 0.00 0.00 4.40
644 645 1.448985 TAAACACCTTGCTCGCCATC 58.551 50.000 0.00 0.00 0.00 3.51
645 646 1.244019 AAACACCTTGCTCGCCATCC 61.244 55.000 0.00 0.00 0.00 3.51
646 647 2.129555 AACACCTTGCTCGCCATCCT 62.130 55.000 0.00 0.00 0.00 3.24
647 648 1.264749 ACACCTTGCTCGCCATCCTA 61.265 55.000 0.00 0.00 0.00 2.94
648 649 0.107703 CACCTTGCTCGCCATCCTAA 60.108 55.000 0.00 0.00 0.00 2.69
649 650 0.618458 ACCTTGCTCGCCATCCTAAA 59.382 50.000 0.00 0.00 0.00 1.85
650 651 1.004277 ACCTTGCTCGCCATCCTAAAA 59.996 47.619 0.00 0.00 0.00 1.52
651 652 2.091541 CCTTGCTCGCCATCCTAAAAA 58.908 47.619 0.00 0.00 0.00 1.94
669 670 2.807247 AAAAACACCTTGCTCGCCT 58.193 47.368 0.00 0.00 0.00 5.52
670 671 1.111277 AAAAACACCTTGCTCGCCTT 58.889 45.000 0.00 0.00 0.00 4.35
671 672 0.385390 AAAACACCTTGCTCGCCTTG 59.615 50.000 0.00 0.00 0.00 3.61
672 673 1.455383 AAACACCTTGCTCGCCTTGG 61.455 55.000 0.00 0.00 0.00 3.61
673 674 3.058160 CACCTTGCTCGCCTTGGG 61.058 66.667 0.00 0.00 0.00 4.12
674 675 3.249189 ACCTTGCTCGCCTTGGGA 61.249 61.111 0.00 0.00 0.00 4.37
675 676 2.437359 CCTTGCTCGCCTTGGGAG 60.437 66.667 3.99 3.99 43.96 4.30
676 677 2.348998 CTTGCTCGCCTTGGGAGT 59.651 61.111 9.50 0.00 43.22 3.85
677 678 1.302832 CTTGCTCGCCTTGGGAGTT 60.303 57.895 9.50 0.00 43.22 3.01
678 679 1.580845 CTTGCTCGCCTTGGGAGTTG 61.581 60.000 9.50 0.00 43.22 3.16
679 680 2.747855 GCTCGCCTTGGGAGTTGG 60.748 66.667 9.50 0.00 43.22 3.77
680 681 2.045926 CTCGCCTTGGGAGTTGGG 60.046 66.667 0.41 0.00 37.75 4.12
681 682 2.528127 TCGCCTTGGGAGTTGGGA 60.528 61.111 0.00 0.00 0.00 4.37
682 683 1.915078 CTCGCCTTGGGAGTTGGGAT 61.915 60.000 0.41 0.00 37.75 3.85
683 684 0.619255 TCGCCTTGGGAGTTGGGATA 60.619 55.000 0.00 0.00 0.00 2.59
689 690 3.495100 CCTTGGGAGTTGGGATATCTTCG 60.495 52.174 2.05 0.00 0.00 3.79
708 709 2.500098 TCGGGGAAGAAGATGTTTCGAT 59.500 45.455 0.00 0.00 0.00 3.59
770 771 2.159707 CGCGATTGTAAAAGACACCTGG 60.160 50.000 0.00 0.00 37.96 4.45
803 804 6.183360 GGATTTATTTTCGGAGCCATACCAAA 60.183 38.462 0.00 0.00 0.00 3.28
860 3134 2.501610 GACCGATCTGCCTCCACC 59.498 66.667 0.00 0.00 0.00 4.61
894 3168 0.248843 CAGAGTTCTCAGAGGTGGGC 59.751 60.000 0.00 0.00 0.00 5.36
1240 3514 1.374758 GTGCTGACCGTGGGAGAAG 60.375 63.158 0.00 0.00 0.00 2.85
1302 3576 3.130160 GGCGGCAAGAAGCTCAGG 61.130 66.667 3.07 0.00 44.79 3.86
1425 3702 0.033504 ACGACGACAGCAACAAGGAT 59.966 50.000 0.00 0.00 0.00 3.24
1480 3757 2.955660 AGTTTGCCGGAAGTTGAATTGA 59.044 40.909 5.05 0.00 0.00 2.57
1495 3772 0.963962 ATTGAAGTGTGCAGCCCTTG 59.036 50.000 0.00 0.00 0.00 3.61
1649 3927 9.388346 GATCTTCTCTCTGTTATGTACAATACG 57.612 37.037 0.00 0.00 36.02 3.06
1720 3998 5.105752 CCTTCTACTGATGTTACTGCTGAC 58.894 45.833 0.00 0.00 0.00 3.51
1906 4194 0.110486 TTCTGTTCTGCTTGGACCCC 59.890 55.000 0.00 0.00 0.00 4.95
1942 4230 7.066404 GCCTTCCTTTGTTTTGTTTTGGAATTA 59.934 33.333 0.00 0.00 32.61 1.40
2071 4474 3.746045 GAACCAAGGTTCCTTTTTCCC 57.254 47.619 18.99 0.00 46.21 3.97
2074 4477 0.039527 CAAGGTTCCTTTTTCCCGCG 60.040 55.000 0.00 0.00 0.00 6.46
2128 4531 2.500098 CTCCCGGACAATCAGTTTCCTA 59.500 50.000 0.73 0.00 0.00 2.94
2151 4554 3.490759 CTCACCCACGCACGCATC 61.491 66.667 0.00 0.00 0.00 3.91
2153 4556 2.125713 CACCCACGCACGCATCTA 60.126 61.111 0.00 0.00 0.00 1.98
2154 4557 1.521457 CACCCACGCACGCATCTAT 60.521 57.895 0.00 0.00 0.00 1.98
2155 4558 1.089481 CACCCACGCACGCATCTATT 61.089 55.000 0.00 0.00 0.00 1.73
2156 4559 0.392461 ACCCACGCACGCATCTATTT 60.392 50.000 0.00 0.00 0.00 1.40
2157 4560 0.732571 CCCACGCACGCATCTATTTT 59.267 50.000 0.00 0.00 0.00 1.82
2158 4561 1.937223 CCCACGCACGCATCTATTTTA 59.063 47.619 0.00 0.00 0.00 1.52
2159 4562 2.548057 CCCACGCACGCATCTATTTTAT 59.452 45.455 0.00 0.00 0.00 1.40
2160 4563 3.363970 CCCACGCACGCATCTATTTTATC 60.364 47.826 0.00 0.00 0.00 1.75
2161 4564 3.247411 CCACGCACGCATCTATTTTATCA 59.753 43.478 0.00 0.00 0.00 2.15
2165 4568 4.778025 CGCACGCATCTATTTTATCAATCG 59.222 41.667 0.00 0.00 0.00 3.34
2179 4582 6.767524 TTATCAATCGCCTTAAACAACCAT 57.232 33.333 0.00 0.00 0.00 3.55
2249 4652 6.006449 AGAACTGCCTGAACAAGTATCAAAT 58.994 36.000 0.00 0.00 0.00 2.32
2277 4680 0.969409 AGCTGGAGAAAGCCAATGCC 60.969 55.000 0.00 0.00 44.68 4.40
2278 4681 1.252904 GCTGGAGAAAGCCAATGCCA 61.253 55.000 0.00 0.00 37.52 4.92
2345 4748 3.810386 AGTCTTCTTTGCGGAGTTTCTTC 59.190 43.478 0.00 0.00 0.00 2.87
2391 4794 1.620822 AATCGGCAGCTTTTCAACCT 58.379 45.000 0.00 0.00 0.00 3.50
2393 4796 2.264005 TCGGCAGCTTTTCAACCTTA 57.736 45.000 0.00 0.00 0.00 2.69
2401 4804 6.270064 GCAGCTTTTCAACCTTACAACTAAA 58.730 36.000 0.00 0.00 0.00 1.85
2402 4805 6.754675 GCAGCTTTTCAACCTTACAACTAAAA 59.245 34.615 0.00 0.00 0.00 1.52
2403 4806 7.043391 GCAGCTTTTCAACCTTACAACTAAAAG 60.043 37.037 0.00 0.00 36.19 2.27
2404 4807 7.435192 CAGCTTTTCAACCTTACAACTAAAAGG 59.565 37.037 0.00 0.00 46.44 3.11
2407 4810 9.463443 CTTTTCAACCTTACAACTAAAAGGATG 57.537 33.333 8.06 6.58 44.27 3.51
2408 4811 8.528044 TTTCAACCTTACAACTAAAAGGATGT 57.472 30.769 8.06 0.00 44.27 3.06
2409 4812 8.528044 TTCAACCTTACAACTAAAAGGATGTT 57.472 30.769 8.06 0.00 44.27 2.71
2410 4813 9.629878 TTCAACCTTACAACTAAAAGGATGTTA 57.370 29.630 8.06 0.00 44.27 2.41
2411 4814 9.059260 TCAACCTTACAACTAAAAGGATGTTAC 57.941 33.333 8.06 0.00 44.27 2.50
2412 4815 7.662604 ACCTTACAACTAAAAGGATGTTACG 57.337 36.000 8.06 0.00 44.27 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.765182 TCAAGGGTTCAAAACAAAGCAAAAA 59.235 32.000 0.00 0.00 0.00 1.94
23 24 5.308825 TCAAGGGTTCAAAACAAAGCAAAA 58.691 33.333 0.00 0.00 0.00 2.44
24 25 4.899502 TCAAGGGTTCAAAACAAAGCAAA 58.100 34.783 0.00 0.00 0.00 3.68
25 26 4.543590 TCAAGGGTTCAAAACAAAGCAA 57.456 36.364 0.00 0.00 0.00 3.91
26 27 4.543590 TTCAAGGGTTCAAAACAAAGCA 57.456 36.364 0.00 0.00 0.00 3.91
27 28 5.220835 CCAATTCAAGGGTTCAAAACAAAGC 60.221 40.000 0.00 0.00 0.00 3.51
28 29 5.296531 CCCAATTCAAGGGTTCAAAACAAAG 59.703 40.000 0.00 0.00 41.61 2.77
29 30 5.045578 TCCCAATTCAAGGGTTCAAAACAAA 60.046 36.000 0.00 0.00 46.82 2.83
30 31 4.471386 TCCCAATTCAAGGGTTCAAAACAA 59.529 37.500 0.00 0.00 46.82 2.83
31 32 4.033709 TCCCAATTCAAGGGTTCAAAACA 58.966 39.130 0.00 0.00 46.82 2.83
32 33 4.141824 TGTCCCAATTCAAGGGTTCAAAAC 60.142 41.667 0.00 0.00 46.82 2.43
33 34 4.033709 TGTCCCAATTCAAGGGTTCAAAA 58.966 39.130 0.00 0.00 46.82 2.44
34 35 3.647636 TGTCCCAATTCAAGGGTTCAAA 58.352 40.909 0.00 0.00 46.82 2.69
35 36 3.320610 TGTCCCAATTCAAGGGTTCAA 57.679 42.857 0.00 0.00 46.82 2.69
36 37 3.320610 TTGTCCCAATTCAAGGGTTCA 57.679 42.857 0.00 0.00 46.82 3.18
37 38 4.890158 AATTGTCCCAATTCAAGGGTTC 57.110 40.909 0.00 0.00 46.82 3.62
38 39 4.411869 ACAAATTGTCCCAATTCAAGGGTT 59.588 37.500 2.92 0.00 46.82 4.11
39 40 3.973305 ACAAATTGTCCCAATTCAAGGGT 59.027 39.130 2.92 0.00 46.82 4.34
40 41 6.594937 CAATACAAATTGTCCCAATTCAAGGG 59.405 38.462 0.22 0.00 39.61 3.95
41 42 7.599630 CAATACAAATTGTCCCAATTCAAGG 57.400 36.000 0.22 0.00 38.15 3.61
54 55 9.303537 TGCACATTCATCATACAATACAAATTG 57.696 29.630 0.00 0.00 46.66 2.32
58 59 9.558396 TCTATGCACATTCATCATACAATACAA 57.442 29.630 0.00 0.00 0.00 2.41
59 60 8.992073 GTCTATGCACATTCATCATACAATACA 58.008 33.333 0.00 0.00 0.00 2.29
60 61 9.212641 AGTCTATGCACATTCATCATACAATAC 57.787 33.333 0.00 0.00 0.00 1.89
61 62 9.211485 CAGTCTATGCACATTCATCATACAATA 57.789 33.333 0.00 0.00 0.00 1.90
62 63 8.095937 CAGTCTATGCACATTCATCATACAAT 57.904 34.615 0.00 0.00 0.00 2.71
63 64 7.486802 CAGTCTATGCACATTCATCATACAA 57.513 36.000 0.00 0.00 0.00 2.41
79 80 3.252701 GCCTCAAATCCATGCAGTCTATG 59.747 47.826 0.00 0.00 0.00 2.23
80 81 3.137913 AGCCTCAAATCCATGCAGTCTAT 59.862 43.478 0.00 0.00 0.00 1.98
81 82 2.507058 AGCCTCAAATCCATGCAGTCTA 59.493 45.455 0.00 0.00 0.00 2.59
82 83 1.284198 AGCCTCAAATCCATGCAGTCT 59.716 47.619 0.00 0.00 0.00 3.24
83 84 1.674962 GAGCCTCAAATCCATGCAGTC 59.325 52.381 0.00 0.00 0.00 3.51
84 85 1.684248 GGAGCCTCAAATCCATGCAGT 60.684 52.381 0.00 0.00 35.54 4.40
85 86 1.030457 GGAGCCTCAAATCCATGCAG 58.970 55.000 0.00 0.00 35.54 4.41
86 87 0.749091 CGGAGCCTCAAATCCATGCA 60.749 55.000 0.00 0.00 35.14 3.96
87 88 2.028130 CGGAGCCTCAAATCCATGC 58.972 57.895 0.00 0.00 35.14 4.06
101 102 3.270027 TCCACATACTTCAAATGCGGAG 58.730 45.455 0.00 0.00 32.06 4.63
102 103 3.342377 TCCACATACTTCAAATGCGGA 57.658 42.857 0.00 0.00 34.08 5.54
103 104 3.378112 ACATCCACATACTTCAAATGCGG 59.622 43.478 0.00 0.00 0.00 5.69
104 105 4.345288 CACATCCACATACTTCAAATGCG 58.655 43.478 0.00 0.00 0.00 4.73
105 106 4.107622 GCACATCCACATACTTCAAATGC 58.892 43.478 0.00 0.00 0.00 3.56
106 107 4.345288 CGCACATCCACATACTTCAAATG 58.655 43.478 0.00 0.00 0.00 2.32
107 108 3.378112 CCGCACATCCACATACTTCAAAT 59.622 43.478 0.00 0.00 0.00 2.32
108 109 2.746904 CCGCACATCCACATACTTCAAA 59.253 45.455 0.00 0.00 0.00 2.69
109 110 2.290008 ACCGCACATCCACATACTTCAA 60.290 45.455 0.00 0.00 0.00 2.69
110 111 1.277842 ACCGCACATCCACATACTTCA 59.722 47.619 0.00 0.00 0.00 3.02
111 112 2.024176 ACCGCACATCCACATACTTC 57.976 50.000 0.00 0.00 0.00 3.01
112 113 3.267483 GTTACCGCACATCCACATACTT 58.733 45.455 0.00 0.00 0.00 2.24
113 114 2.419574 GGTTACCGCACATCCACATACT 60.420 50.000 0.00 0.00 0.00 2.12
114 115 1.937899 GGTTACCGCACATCCACATAC 59.062 52.381 0.00 0.00 0.00 2.39
115 116 1.134340 GGGTTACCGCACATCCACATA 60.134 52.381 0.00 0.00 0.00 2.29
116 117 0.393808 GGGTTACCGCACATCCACAT 60.394 55.000 0.00 0.00 0.00 3.21
117 118 1.003112 GGGTTACCGCACATCCACA 60.003 57.895 0.00 0.00 0.00 4.17
118 119 0.393808 ATGGGTTACCGCACATCCAC 60.394 55.000 0.00 0.00 40.75 4.02
119 120 1.205055 TATGGGTTACCGCACATCCA 58.795 50.000 0.00 0.00 40.75 3.41
120 121 2.151202 CATATGGGTTACCGCACATCC 58.849 52.381 0.00 0.00 40.75 3.51
121 122 3.067106 CTCATATGGGTTACCGCACATC 58.933 50.000 2.13 0.00 40.75 3.06
122 123 2.703536 TCTCATATGGGTTACCGCACAT 59.296 45.455 1.67 0.00 40.75 3.21
123 124 2.102420 CTCTCATATGGGTTACCGCACA 59.898 50.000 1.67 0.00 40.75 4.57
124 125 2.548067 CCTCTCATATGGGTTACCGCAC 60.548 54.545 1.67 0.00 40.75 5.34
125 126 1.691976 CCTCTCATATGGGTTACCGCA 59.308 52.381 1.67 0.00 40.75 5.69
126 127 1.608283 GCCTCTCATATGGGTTACCGC 60.608 57.143 1.67 0.00 40.75 5.68
127 128 1.971357 AGCCTCTCATATGGGTTACCG 59.029 52.381 1.67 0.00 40.75 4.02
128 129 2.706190 ACAGCCTCTCATATGGGTTACC 59.294 50.000 1.67 0.00 37.24 2.85
129 130 3.244249 GGACAGCCTCTCATATGGGTTAC 60.244 52.174 1.67 0.00 30.91 2.50
130 131 2.972713 GGACAGCCTCTCATATGGGTTA 59.027 50.000 1.67 0.00 30.91 2.85
131 132 1.771255 GGACAGCCTCTCATATGGGTT 59.229 52.381 1.67 0.00 30.91 4.11
132 133 1.061812 AGGACAGCCTCTCATATGGGT 60.062 52.381 1.67 0.00 42.19 4.51
133 134 1.727062 AGGACAGCCTCTCATATGGG 58.273 55.000 2.13 0.00 42.19 4.00
134 135 2.230025 CGTAGGACAGCCTCTCATATGG 59.770 54.545 2.13 0.00 45.54 2.74
135 136 3.567576 CGTAGGACAGCCTCTCATATG 57.432 52.381 0.00 0.00 45.54 1.78
170 171 3.718210 CTCTTAGGCACGTCCGGGC 62.718 68.421 5.13 5.13 45.23 6.13
171 172 2.494918 CTCTTAGGCACGTCCGGG 59.505 66.667 0.00 0.00 40.77 5.73
172 173 2.494918 CCTCTTAGGCACGTCCGG 59.505 66.667 0.00 0.00 40.77 5.14
181 182 1.558233 CCCCCTATACGCCTCTTAGG 58.442 60.000 0.00 0.00 38.80 2.69
182 183 0.896226 GCCCCCTATACGCCTCTTAG 59.104 60.000 0.00 0.00 0.00 2.18
183 184 0.543646 GGCCCCCTATACGCCTCTTA 60.544 60.000 0.00 0.00 39.70 2.10
184 185 1.842010 GGCCCCCTATACGCCTCTT 60.842 63.158 0.00 0.00 39.70 2.85
185 186 2.203803 GGCCCCCTATACGCCTCT 60.204 66.667 0.00 0.00 39.70 3.69
186 187 3.692406 CGGCCCCCTATACGCCTC 61.692 72.222 0.00 0.00 40.70 4.70
187 188 3.761690 TTCGGCCCCCTATACGCCT 62.762 63.158 0.00 0.00 40.70 5.52
188 189 2.120737 AATTCGGCCCCCTATACGCC 62.121 60.000 0.00 0.00 39.41 5.68
189 190 0.250597 AAATTCGGCCCCCTATACGC 60.251 55.000 0.00 0.00 0.00 4.42
190 191 1.519408 CAAATTCGGCCCCCTATACG 58.481 55.000 0.00 0.00 0.00 3.06
191 192 1.244816 GCAAATTCGGCCCCCTATAC 58.755 55.000 0.00 0.00 0.00 1.47
192 193 0.111639 GGCAAATTCGGCCCCCTATA 59.888 55.000 9.40 0.00 45.87 1.31
193 194 1.152546 GGCAAATTCGGCCCCCTAT 60.153 57.895 9.40 0.00 45.87 2.57
194 195 2.277404 GGCAAATTCGGCCCCCTA 59.723 61.111 9.40 0.00 45.87 3.53
200 201 0.109132 CTGGACTTGGCAAATTCGGC 60.109 55.000 0.00 0.00 0.00 5.54
201 202 0.109132 GCTGGACTTGGCAAATTCGG 60.109 55.000 0.00 0.00 0.00 4.30
202 203 0.454957 CGCTGGACTTGGCAAATTCG 60.455 55.000 0.00 0.00 0.00 3.34
203 204 0.109132 CCGCTGGACTTGGCAAATTC 60.109 55.000 0.00 0.39 0.00 2.17
204 205 1.966762 CCGCTGGACTTGGCAAATT 59.033 52.632 0.00 0.00 0.00 1.82
205 206 3.685435 CCGCTGGACTTGGCAAAT 58.315 55.556 0.00 0.00 0.00 2.32
210 211 2.629656 CCAAAGCCGCTGGACTTGG 61.630 63.158 7.09 7.09 35.85 3.61
211 212 0.962356 ATCCAAAGCCGCTGGACTTG 60.962 55.000 3.56 0.00 45.67 3.16
212 213 0.962356 CATCCAAAGCCGCTGGACTT 60.962 55.000 3.56 0.00 45.67 3.01
213 214 1.377725 CATCCAAAGCCGCTGGACT 60.378 57.895 3.56 0.00 45.67 3.85
214 215 3.056313 GCATCCAAAGCCGCTGGAC 62.056 63.158 3.56 0.00 45.67 4.02
215 216 2.751436 GCATCCAAAGCCGCTGGA 60.751 61.111 3.95 3.95 46.86 3.86
216 217 2.753043 AGCATCCAAAGCCGCTGG 60.753 61.111 0.00 0.00 32.33 4.85
217 218 0.462581 TAGAGCATCCAAAGCCGCTG 60.463 55.000 0.00 0.00 34.12 5.18
218 219 0.253044 TTAGAGCATCCAAAGCCGCT 59.747 50.000 0.00 0.00 37.44 5.52
219 220 1.312815 ATTAGAGCATCCAAAGCCGC 58.687 50.000 0.00 0.00 33.66 6.53
220 221 3.209410 AGAATTAGAGCATCCAAAGCCG 58.791 45.455 0.00 0.00 33.66 5.52
221 222 6.294397 CCATTAGAATTAGAGCATCCAAAGCC 60.294 42.308 0.00 0.00 33.66 4.35
222 223 6.294397 CCCATTAGAATTAGAGCATCCAAAGC 60.294 42.308 0.00 0.00 33.66 3.51
223 224 6.294397 GCCCATTAGAATTAGAGCATCCAAAG 60.294 42.308 0.00 0.00 33.66 2.77
224 225 5.536161 GCCCATTAGAATTAGAGCATCCAAA 59.464 40.000 0.00 0.00 33.66 3.28
225 226 5.072741 GCCCATTAGAATTAGAGCATCCAA 58.927 41.667 0.00 0.00 33.66 3.53
226 227 4.507335 GGCCCATTAGAATTAGAGCATCCA 60.507 45.833 0.00 0.00 33.66 3.41
227 228 4.013050 GGCCCATTAGAATTAGAGCATCC 58.987 47.826 0.00 0.00 33.66 3.51
228 229 4.013050 GGGCCCATTAGAATTAGAGCATC 58.987 47.826 19.95 0.00 0.00 3.91
229 230 3.659686 AGGGCCCATTAGAATTAGAGCAT 59.340 43.478 27.56 0.00 0.00 3.79
230 231 3.056080 AGGGCCCATTAGAATTAGAGCA 58.944 45.455 27.56 0.00 0.00 4.26
231 232 3.073062 TCAGGGCCCATTAGAATTAGAGC 59.927 47.826 27.56 0.00 0.00 4.09
232 233 4.982241 TCAGGGCCCATTAGAATTAGAG 57.018 45.455 27.56 0.00 0.00 2.43
233 234 6.562608 ACTTATCAGGGCCCATTAGAATTAGA 59.437 38.462 27.56 5.79 0.00 2.10
234 235 6.784031 ACTTATCAGGGCCCATTAGAATTAG 58.216 40.000 27.56 15.36 0.00 1.73
235 236 6.780198 ACTTATCAGGGCCCATTAGAATTA 57.220 37.500 27.56 3.80 0.00 1.40
236 237 5.669798 ACTTATCAGGGCCCATTAGAATT 57.330 39.130 27.56 3.44 0.00 2.17
237 238 5.014228 GGTACTTATCAGGGCCCATTAGAAT 59.986 44.000 27.56 10.01 0.00 2.40
238 239 4.349930 GGTACTTATCAGGGCCCATTAGAA 59.650 45.833 27.56 11.19 0.00 2.10
239 240 3.908103 GGTACTTATCAGGGCCCATTAGA 59.092 47.826 27.56 16.58 0.00 2.10
240 241 3.650942 TGGTACTTATCAGGGCCCATTAG 59.349 47.826 27.56 15.33 0.00 1.73
241 242 3.671079 TGGTACTTATCAGGGCCCATTA 58.329 45.455 27.56 9.18 0.00 1.90
242 243 2.498441 TGGTACTTATCAGGGCCCATT 58.502 47.619 27.56 10.73 0.00 3.16
243 244 2.206322 TGGTACTTATCAGGGCCCAT 57.794 50.000 27.56 12.80 0.00 4.00
244 245 2.206322 ATGGTACTTATCAGGGCCCA 57.794 50.000 27.56 3.72 0.00 5.36
245 246 3.587506 ACATATGGTACTTATCAGGGCCC 59.412 47.826 16.46 16.46 0.00 5.80
246 247 4.041691 ACACATATGGTACTTATCAGGGCC 59.958 45.833 7.80 0.00 0.00 5.80
247 248 4.997395 CACACATATGGTACTTATCAGGGC 59.003 45.833 7.80 0.00 0.00 5.19
248 249 6.183360 TGTCACACATATGGTACTTATCAGGG 60.183 42.308 7.80 0.00 0.00 4.45
249 250 6.701841 GTGTCACACATATGGTACTTATCAGG 59.298 42.308 2.00 0.00 34.08 3.86
250 251 6.417930 CGTGTCACACATATGGTACTTATCAG 59.582 42.308 9.06 0.00 33.40 2.90
251 252 6.095720 TCGTGTCACACATATGGTACTTATCA 59.904 38.462 9.06 0.00 33.40 2.15
252 253 6.500910 TCGTGTCACACATATGGTACTTATC 58.499 40.000 9.06 0.00 33.40 1.75
253 254 6.459670 TCGTGTCACACATATGGTACTTAT 57.540 37.500 9.06 0.00 33.40 1.73
254 255 5.900865 TCGTGTCACACATATGGTACTTA 57.099 39.130 9.06 0.00 33.40 2.24
255 256 4.794278 TCGTGTCACACATATGGTACTT 57.206 40.909 9.06 0.00 33.40 2.24
256 257 4.021807 TGTTCGTGTCACACATATGGTACT 60.022 41.667 9.06 0.00 33.40 2.73
257 258 4.090930 GTGTTCGTGTCACACATATGGTAC 59.909 45.833 9.06 0.00 43.52 3.34
258 259 4.239304 GTGTTCGTGTCACACATATGGTA 58.761 43.478 9.06 0.00 43.52 3.25
259 260 3.064207 GTGTTCGTGTCACACATATGGT 58.936 45.455 9.06 0.00 43.52 3.55
260 261 3.722555 GTGTTCGTGTCACACATATGG 57.277 47.619 9.06 0.00 43.52 2.74
266 267 0.041312 GCCATGTGTTCGTGTCACAC 60.041 55.000 0.00 0.00 46.26 3.82
268 269 0.660488 TTGCCATGTGTTCGTGTCAC 59.340 50.000 0.00 0.00 36.48 3.67
269 270 0.660488 GTTGCCATGTGTTCGTGTCA 59.340 50.000 0.00 0.00 0.00 3.58
270 271 0.944386 AGTTGCCATGTGTTCGTGTC 59.056 50.000 0.00 0.00 0.00 3.67
271 272 0.944386 GAGTTGCCATGTGTTCGTGT 59.056 50.000 0.00 0.00 0.00 4.49
272 273 0.238289 GGAGTTGCCATGTGTTCGTG 59.762 55.000 0.00 0.00 36.34 4.35
273 274 1.227999 CGGAGTTGCCATGTGTTCGT 61.228 55.000 0.00 0.00 35.94 3.85
274 275 0.948623 TCGGAGTTGCCATGTGTTCG 60.949 55.000 0.00 0.00 35.94 3.95
275 276 1.234821 TTCGGAGTTGCCATGTGTTC 58.765 50.000 0.00 0.00 35.94 3.18
276 277 1.541147 CATTCGGAGTTGCCATGTGTT 59.459 47.619 0.00 0.00 35.94 3.32
277 278 1.167851 CATTCGGAGTTGCCATGTGT 58.832 50.000 0.00 0.00 35.94 3.72
278 279 1.131126 GACATTCGGAGTTGCCATGTG 59.869 52.381 0.00 0.00 34.42 3.21
279 280 1.003580 AGACATTCGGAGTTGCCATGT 59.996 47.619 0.00 0.00 36.33 3.21
280 281 1.742761 AGACATTCGGAGTTGCCATG 58.257 50.000 0.00 0.00 35.94 3.66
281 282 2.496899 AAGACATTCGGAGTTGCCAT 57.503 45.000 0.00 0.00 35.94 4.40
282 283 2.270352 AAAGACATTCGGAGTTGCCA 57.730 45.000 0.00 0.00 35.94 4.92
283 284 4.394920 TCATAAAAGACATTCGGAGTTGCC 59.605 41.667 0.00 0.00 0.00 4.52
284 285 5.106712 TGTCATAAAAGACATTCGGAGTTGC 60.107 40.000 0.00 0.00 43.18 4.17
285 286 6.480524 TGTCATAAAAGACATTCGGAGTTG 57.519 37.500 0.00 0.00 43.18 3.16
286 287 6.710744 ACTTGTCATAAAAGACATTCGGAGTT 59.289 34.615 0.00 0.00 46.90 3.01
287 288 6.231211 ACTTGTCATAAAAGACATTCGGAGT 58.769 36.000 0.00 0.00 46.90 3.85
288 289 6.727824 ACTTGTCATAAAAGACATTCGGAG 57.272 37.500 0.00 0.00 46.90 4.63
289 290 7.504924 AAACTTGTCATAAAAGACATTCGGA 57.495 32.000 0.00 0.00 46.90 4.55
290 291 8.504005 ACTAAACTTGTCATAAAAGACATTCGG 58.496 33.333 0.00 0.00 46.90 4.30
291 292 9.318041 CACTAAACTTGTCATAAAAGACATTCG 57.682 33.333 0.00 0.00 46.90 3.34
294 295 9.561069 AGTCACTAAACTTGTCATAAAAGACAT 57.439 29.630 0.00 0.00 46.90 3.06
295 296 8.958119 AGTCACTAAACTTGTCATAAAAGACA 57.042 30.769 0.00 0.00 46.12 3.41
308 309 9.950496 AGTTATCATCATCAAGTCACTAAACTT 57.050 29.630 0.00 0.00 40.08 2.66
339 340 9.834628 CGAAAAAGAAGTTGCCATACTTAATAA 57.165 29.630 0.00 0.00 38.43 1.40
340 341 8.455682 CCGAAAAAGAAGTTGCCATACTTAATA 58.544 33.333 0.00 0.00 38.43 0.98
341 342 7.175990 TCCGAAAAAGAAGTTGCCATACTTAAT 59.824 33.333 0.00 0.00 38.43 1.40
342 343 6.487331 TCCGAAAAAGAAGTTGCCATACTTAA 59.513 34.615 0.00 0.00 38.43 1.85
343 344 5.998981 TCCGAAAAAGAAGTTGCCATACTTA 59.001 36.000 0.00 0.00 38.43 2.24
344 345 4.825085 TCCGAAAAAGAAGTTGCCATACTT 59.175 37.500 0.00 0.00 40.92 2.24
345 346 4.394729 TCCGAAAAAGAAGTTGCCATACT 58.605 39.130 0.00 0.00 0.00 2.12
346 347 4.759516 TCCGAAAAAGAAGTTGCCATAC 57.240 40.909 0.00 0.00 0.00 2.39
347 348 5.007034 TCATCCGAAAAAGAAGTTGCCATA 58.993 37.500 0.00 0.00 0.00 2.74
348 349 3.826157 TCATCCGAAAAAGAAGTTGCCAT 59.174 39.130 0.00 0.00 0.00 4.40
349 350 3.218453 TCATCCGAAAAAGAAGTTGCCA 58.782 40.909 0.00 0.00 0.00 4.92
350 351 3.915437 TCATCCGAAAAAGAAGTTGCC 57.085 42.857 0.00 0.00 0.00 4.52
351 352 5.046910 TCATCATCCGAAAAAGAAGTTGC 57.953 39.130 0.00 0.00 0.00 4.17
352 353 8.524870 AAATTCATCATCCGAAAAAGAAGTTG 57.475 30.769 0.00 0.00 0.00 3.16
354 355 9.846248 CTAAAATTCATCATCCGAAAAAGAAGT 57.154 29.630 0.00 0.00 0.00 3.01
355 356 9.846248 ACTAAAATTCATCATCCGAAAAAGAAG 57.154 29.630 0.00 0.00 0.00 2.85
406 407 8.768019 GTCCTGACGTTATTTACAACTAAAGTT 58.232 33.333 0.00 0.00 39.12 2.66
407 408 7.386025 GGTCCTGACGTTATTTACAACTAAAGT 59.614 37.037 0.00 0.00 0.00 2.66
408 409 7.411157 CGGTCCTGACGTTATTTACAACTAAAG 60.411 40.741 0.00 0.00 0.00 1.85
409 410 6.365789 CGGTCCTGACGTTATTTACAACTAAA 59.634 38.462 0.00 0.00 0.00 1.85
410 411 5.863397 CGGTCCTGACGTTATTTACAACTAA 59.137 40.000 0.00 0.00 0.00 2.24
411 412 5.182950 TCGGTCCTGACGTTATTTACAACTA 59.817 40.000 0.00 0.00 0.00 2.24
412 413 4.022068 TCGGTCCTGACGTTATTTACAACT 60.022 41.667 0.00 0.00 0.00 3.16
413 414 4.236935 TCGGTCCTGACGTTATTTACAAC 58.763 43.478 0.00 0.00 0.00 3.32
414 415 4.517952 TCGGTCCTGACGTTATTTACAA 57.482 40.909 0.00 0.00 0.00 2.41
415 416 4.517952 TTCGGTCCTGACGTTATTTACA 57.482 40.909 0.00 0.00 0.00 2.41
416 417 4.201523 CGTTTCGGTCCTGACGTTATTTAC 60.202 45.833 0.00 0.00 0.00 2.01
417 418 3.919804 CGTTTCGGTCCTGACGTTATTTA 59.080 43.478 0.00 0.00 0.00 1.40
418 419 2.733026 CGTTTCGGTCCTGACGTTATTT 59.267 45.455 0.00 0.00 0.00 1.40
419 420 2.331194 CGTTTCGGTCCTGACGTTATT 58.669 47.619 0.00 0.00 0.00 1.40
420 421 1.986698 CGTTTCGGTCCTGACGTTAT 58.013 50.000 0.00 0.00 0.00 1.89
421 422 0.664166 GCGTTTCGGTCCTGACGTTA 60.664 55.000 0.00 0.00 37.78 3.18
422 423 1.952635 GCGTTTCGGTCCTGACGTT 60.953 57.895 0.00 0.00 37.78 3.99
423 424 2.355481 GCGTTTCGGTCCTGACGT 60.355 61.111 0.00 0.00 37.78 4.34
424 425 1.219522 AAAGCGTTTCGGTCCTGACG 61.220 55.000 4.69 4.69 36.27 4.35
425 426 0.234884 CAAAGCGTTTCGGTCCTGAC 59.765 55.000 0.00 0.00 36.27 3.51
426 427 0.179067 ACAAAGCGTTTCGGTCCTGA 60.179 50.000 9.23 0.00 36.27 3.86
427 428 0.041312 CACAAAGCGTTTCGGTCCTG 60.041 55.000 0.00 0.00 36.27 3.86
428 429 1.782028 GCACAAAGCGTTTCGGTCCT 61.782 55.000 0.00 0.00 36.27 3.85
429 430 1.370051 GCACAAAGCGTTTCGGTCC 60.370 57.895 0.00 0.00 36.27 4.46
430 431 4.205584 GCACAAAGCGTTTCGGTC 57.794 55.556 0.00 0.00 36.27 4.79
439 440 0.861450 GTCACACGTGTGCACAAAGC 60.861 55.000 37.70 19.21 45.25 3.51
440 441 0.445829 TGTCACACGTGTGCACAAAG 59.554 50.000 37.70 20.57 45.25 2.77
441 442 0.167033 GTGTCACACGTGTGCACAAA 59.833 50.000 40.04 26.98 44.54 2.83
442 443 0.672091 AGTGTCACACGTGTGCACAA 60.672 50.000 42.42 29.18 45.98 3.33
443 444 0.672091 AAGTGTCACACGTGTGCACA 60.672 50.000 42.42 37.52 45.98 4.57
444 445 1.257936 CTAAGTGTCACACGTGTGCAC 59.742 52.381 39.30 39.30 45.25 4.57
445 446 1.566404 CTAAGTGTCACACGTGTGCA 58.434 50.000 37.70 33.00 45.25 4.57
446 447 0.232303 GCTAAGTGTCACACGTGTGC 59.768 55.000 37.70 31.18 45.25 4.57
447 448 1.566404 TGCTAAGTGTCACACGTGTG 58.434 50.000 37.04 37.04 46.91 3.82
448 449 2.526304 ATGCTAAGTGTCACACGTGT 57.474 45.000 17.22 17.22 39.64 4.49
449 450 3.544651 CAAATGCTAAGTGTCACACGTG 58.455 45.455 15.48 15.48 39.64 4.49
450 451 2.548057 CCAAATGCTAAGTGTCACACGT 59.452 45.455 1.22 1.06 39.64 4.49
451 452 2.095768 CCCAAATGCTAAGTGTCACACG 60.096 50.000 1.22 0.00 39.64 4.49
452 453 2.351738 GCCCAAATGCTAAGTGTCACAC 60.352 50.000 0.00 0.00 34.10 3.82
453 454 1.885887 GCCCAAATGCTAAGTGTCACA 59.114 47.619 5.62 0.00 0.00 3.58
454 455 2.162681 AGCCCAAATGCTAAGTGTCAC 58.837 47.619 0.00 0.00 40.56 3.67
455 456 2.584835 AGCCCAAATGCTAAGTGTCA 57.415 45.000 0.00 0.00 40.56 3.58
462 463 4.009675 CACTTCTGTTAGCCCAAATGCTA 58.990 43.478 0.00 0.00 42.75 3.49
463 464 2.821969 CACTTCTGTTAGCCCAAATGCT 59.178 45.455 0.00 0.00 45.38 3.79
464 465 2.819608 TCACTTCTGTTAGCCCAAATGC 59.180 45.455 0.00 0.00 0.00 3.56
465 466 5.404946 CATTCACTTCTGTTAGCCCAAATG 58.595 41.667 0.00 0.00 0.00 2.32
466 467 4.082026 GCATTCACTTCTGTTAGCCCAAAT 60.082 41.667 0.00 0.00 0.00 2.32
467 468 3.255642 GCATTCACTTCTGTTAGCCCAAA 59.744 43.478 0.00 0.00 0.00 3.28
468 469 2.819608 GCATTCACTTCTGTTAGCCCAA 59.180 45.455 0.00 0.00 0.00 4.12
469 470 2.040278 AGCATTCACTTCTGTTAGCCCA 59.960 45.455 0.00 0.00 0.00 5.36
470 471 2.716217 AGCATTCACTTCTGTTAGCCC 58.284 47.619 0.00 0.00 0.00 5.19
471 472 5.118990 TCATAGCATTCACTTCTGTTAGCC 58.881 41.667 0.00 0.00 0.00 3.93
472 473 6.481313 TGATCATAGCATTCACTTCTGTTAGC 59.519 38.462 0.00 0.00 0.00 3.09
473 474 8.429493 TTGATCATAGCATTCACTTCTGTTAG 57.571 34.615 0.00 0.00 0.00 2.34
474 475 8.791327 TTTGATCATAGCATTCACTTCTGTTA 57.209 30.769 0.00 0.00 0.00 2.41
475 476 7.692460 TTTGATCATAGCATTCACTTCTGTT 57.308 32.000 0.00 0.00 0.00 3.16
476 477 7.692460 TTTTGATCATAGCATTCACTTCTGT 57.308 32.000 0.00 0.00 0.00 3.41
477 478 9.582431 AAATTTTGATCATAGCATTCACTTCTG 57.418 29.630 0.00 0.00 0.00 3.02
478 479 9.798994 GAAATTTTGATCATAGCATTCACTTCT 57.201 29.630 0.00 0.00 0.00 2.85
479 480 9.798994 AGAAATTTTGATCATAGCATTCACTTC 57.201 29.630 0.00 0.00 0.00 3.01
480 481 9.582431 CAGAAATTTTGATCATAGCATTCACTT 57.418 29.630 0.00 0.00 0.00 3.16
481 482 7.705325 GCAGAAATTTTGATCATAGCATTCACT 59.295 33.333 0.00 0.00 0.00 3.41
482 483 7.042925 GGCAGAAATTTTGATCATAGCATTCAC 60.043 37.037 0.00 0.00 0.00 3.18
483 484 6.982141 GGCAGAAATTTTGATCATAGCATTCA 59.018 34.615 0.00 0.00 0.00 2.57
484 485 6.982141 TGGCAGAAATTTTGATCATAGCATTC 59.018 34.615 0.00 0.00 0.00 2.67
485 486 6.880484 TGGCAGAAATTTTGATCATAGCATT 58.120 32.000 0.00 0.00 0.00 3.56
486 487 6.097839 ACTGGCAGAAATTTTGATCATAGCAT 59.902 34.615 23.66 0.00 0.00 3.79
487 488 5.419788 ACTGGCAGAAATTTTGATCATAGCA 59.580 36.000 23.66 0.00 0.00 3.49
488 489 5.899299 ACTGGCAGAAATTTTGATCATAGC 58.101 37.500 23.66 0.00 0.00 2.97
489 490 7.137426 GCTACTGGCAGAAATTTTGATCATAG 58.863 38.462 23.66 8.43 41.35 2.23
490 491 6.039717 GGCTACTGGCAGAAATTTTGATCATA 59.960 38.462 23.66 0.00 44.01 2.15
491 492 5.163478 GGCTACTGGCAGAAATTTTGATCAT 60.163 40.000 23.66 0.00 44.01 2.45
492 493 4.158394 GGCTACTGGCAGAAATTTTGATCA 59.842 41.667 23.66 0.00 44.01 2.92
493 494 4.158394 TGGCTACTGGCAGAAATTTTGATC 59.842 41.667 23.66 0.13 44.10 2.92
494 495 4.088634 TGGCTACTGGCAGAAATTTTGAT 58.911 39.130 23.66 0.00 44.10 2.57
495 496 3.495331 TGGCTACTGGCAGAAATTTTGA 58.505 40.909 23.66 0.00 44.10 2.69
496 497 3.940209 TGGCTACTGGCAGAAATTTTG 57.060 42.857 23.66 0.00 44.10 2.44
506 507 1.406539 CAATTGGTGATGGCTACTGGC 59.593 52.381 0.00 0.00 40.90 4.85
507 508 2.026641 CCAATTGGTGATGGCTACTGG 58.973 52.381 16.90 0.00 0.00 4.00
508 509 2.026641 CCCAATTGGTGATGGCTACTG 58.973 52.381 22.91 0.00 35.28 2.74
509 510 1.686115 GCCCAATTGGTGATGGCTACT 60.686 52.381 22.91 0.00 39.05 2.57
510 511 0.746659 GCCCAATTGGTGATGGCTAC 59.253 55.000 22.91 0.00 39.05 3.58
511 512 3.205815 GCCCAATTGGTGATGGCTA 57.794 52.632 22.91 0.00 39.05 3.93
512 513 4.039042 GCCCAATTGGTGATGGCT 57.961 55.556 22.91 0.00 39.05 4.75
521 522 1.818060 TCAGAACCAATCGCCCAATTG 59.182 47.619 0.00 0.00 36.57 2.32
522 523 2.094675 CTCAGAACCAATCGCCCAATT 58.905 47.619 0.00 0.00 0.00 2.32
523 524 1.004745 ACTCAGAACCAATCGCCCAAT 59.995 47.619 0.00 0.00 0.00 3.16
524 525 0.400213 ACTCAGAACCAATCGCCCAA 59.600 50.000 0.00 0.00 0.00 4.12
525 526 0.036388 GACTCAGAACCAATCGCCCA 60.036 55.000 0.00 0.00 0.00 5.36
526 527 0.250513 AGACTCAGAACCAATCGCCC 59.749 55.000 0.00 0.00 0.00 6.13
527 528 1.066858 TGAGACTCAGAACCAATCGCC 60.067 52.381 0.00 0.00 0.00 5.54
528 529 1.996191 GTGAGACTCAGAACCAATCGC 59.004 52.381 5.10 0.00 0.00 4.58
529 530 3.506810 GAGTGAGACTCAGAACCAATCG 58.493 50.000 5.10 0.00 44.45 3.34
530 531 3.506810 CGAGTGAGACTCAGAACCAATC 58.493 50.000 5.10 0.00 45.30 2.67
531 532 2.353208 GCGAGTGAGACTCAGAACCAAT 60.353 50.000 5.10 0.00 45.30 3.16
532 533 1.000163 GCGAGTGAGACTCAGAACCAA 60.000 52.381 5.10 0.00 45.30 3.67
533 534 0.598562 GCGAGTGAGACTCAGAACCA 59.401 55.000 5.10 0.00 45.30 3.67
534 535 0.885196 AGCGAGTGAGACTCAGAACC 59.115 55.000 5.10 0.00 45.30 3.62
535 536 3.004171 TCTAGCGAGTGAGACTCAGAAC 58.996 50.000 5.10 0.00 45.30 3.01
536 537 3.336138 TCTAGCGAGTGAGACTCAGAA 57.664 47.619 5.10 0.00 45.30 3.02
537 538 3.118592 TCATCTAGCGAGTGAGACTCAGA 60.119 47.826 5.10 0.00 45.30 3.27
538 539 3.202097 TCATCTAGCGAGTGAGACTCAG 58.798 50.000 5.10 0.00 45.30 3.35
539 540 3.268023 TCATCTAGCGAGTGAGACTCA 57.732 47.619 0.00 0.00 45.30 3.41
540 541 3.609175 GCATCATCTAGCGAGTGAGACTC 60.609 52.174 0.00 0.00 41.71 3.36
541 542 2.293122 GCATCATCTAGCGAGTGAGACT 59.707 50.000 0.00 0.00 0.00 3.24
542 543 2.293122 AGCATCATCTAGCGAGTGAGAC 59.707 50.000 0.00 0.00 35.48 3.36
543 544 2.292845 CAGCATCATCTAGCGAGTGAGA 59.707 50.000 0.00 0.00 35.48 3.27
544 545 2.663808 CAGCATCATCTAGCGAGTGAG 58.336 52.381 0.00 0.00 35.48 3.51
545 546 1.269465 GCAGCATCATCTAGCGAGTGA 60.269 52.381 0.00 0.00 35.48 3.41
546 547 1.138337 GCAGCATCATCTAGCGAGTG 58.862 55.000 0.00 0.00 35.48 3.51
547 548 3.584586 GCAGCATCATCTAGCGAGT 57.415 52.632 0.00 0.00 35.48 4.18
562 563 3.003689 CCTTAATCCCAATTAGTGCGCAG 59.996 47.826 12.22 0.00 0.00 5.18
563 564 2.948979 CCTTAATCCCAATTAGTGCGCA 59.051 45.455 5.66 5.66 0.00 6.09
564 565 3.211045 TCCTTAATCCCAATTAGTGCGC 58.789 45.455 0.00 0.00 0.00 6.09
565 566 4.703897 TCTCCTTAATCCCAATTAGTGCG 58.296 43.478 0.00 0.00 0.00 5.34
566 567 7.224297 TGTATCTCCTTAATCCCAATTAGTGC 58.776 38.462 0.00 0.00 0.00 4.40
567 568 9.277783 CTTGTATCTCCTTAATCCCAATTAGTG 57.722 37.037 0.00 0.00 0.00 2.74
568 569 9.225682 TCTTGTATCTCCTTAATCCCAATTAGT 57.774 33.333 0.00 0.00 0.00 2.24
569 570 9.717942 CTCTTGTATCTCCTTAATCCCAATTAG 57.282 37.037 0.00 0.00 0.00 1.73
570 571 9.447279 TCTCTTGTATCTCCTTAATCCCAATTA 57.553 33.333 0.00 0.00 0.00 1.40
571 572 8.337118 TCTCTTGTATCTCCTTAATCCCAATT 57.663 34.615 0.00 0.00 0.00 2.32
572 573 7.937700 TCTCTTGTATCTCCTTAATCCCAAT 57.062 36.000 0.00 0.00 0.00 3.16
573 574 7.635971 GCTTCTCTTGTATCTCCTTAATCCCAA 60.636 40.741 0.00 0.00 0.00 4.12
574 575 6.183361 GCTTCTCTTGTATCTCCTTAATCCCA 60.183 42.308 0.00 0.00 0.00 4.37
575 576 6.042666 AGCTTCTCTTGTATCTCCTTAATCCC 59.957 42.308 0.00 0.00 0.00 3.85
576 577 6.928492 CAGCTTCTCTTGTATCTCCTTAATCC 59.072 42.308 0.00 0.00 0.00 3.01
577 578 6.423604 GCAGCTTCTCTTGTATCTCCTTAATC 59.576 42.308 0.00 0.00 0.00 1.75
578 579 6.287525 GCAGCTTCTCTTGTATCTCCTTAAT 58.712 40.000 0.00 0.00 0.00 1.40
579 580 5.665459 GCAGCTTCTCTTGTATCTCCTTAA 58.335 41.667 0.00 0.00 0.00 1.85
580 581 4.202060 CGCAGCTTCTCTTGTATCTCCTTA 60.202 45.833 0.00 0.00 0.00 2.69
581 582 3.430098 CGCAGCTTCTCTTGTATCTCCTT 60.430 47.826 0.00 0.00 0.00 3.36
582 583 2.100584 CGCAGCTTCTCTTGTATCTCCT 59.899 50.000 0.00 0.00 0.00 3.69
583 584 2.099921 TCGCAGCTTCTCTTGTATCTCC 59.900 50.000 0.00 0.00 0.00 3.71
584 585 3.181491 ACTCGCAGCTTCTCTTGTATCTC 60.181 47.826 0.00 0.00 0.00 2.75
585 586 2.757868 ACTCGCAGCTTCTCTTGTATCT 59.242 45.455 0.00 0.00 0.00 1.98
586 587 3.157932 ACTCGCAGCTTCTCTTGTATC 57.842 47.619 0.00 0.00 0.00 2.24
587 588 3.697045 ACTACTCGCAGCTTCTCTTGTAT 59.303 43.478 0.00 0.00 0.00 2.29
588 589 3.082548 ACTACTCGCAGCTTCTCTTGTA 58.917 45.455 0.00 0.00 0.00 2.41
589 590 1.889829 ACTACTCGCAGCTTCTCTTGT 59.110 47.619 0.00 0.00 0.00 3.16
590 591 2.525055 GACTACTCGCAGCTTCTCTTG 58.475 52.381 0.00 0.00 0.00 3.02
591 592 1.131504 CGACTACTCGCAGCTTCTCTT 59.868 52.381 0.00 0.00 31.91 2.85
592 593 0.730265 CGACTACTCGCAGCTTCTCT 59.270 55.000 0.00 0.00 31.91 3.10
593 594 0.248296 CCGACTACTCGCAGCTTCTC 60.248 60.000 0.00 0.00 38.70 2.87
594 595 0.677098 TCCGACTACTCGCAGCTTCT 60.677 55.000 0.00 0.00 38.70 2.85
595 596 0.170561 TTCCGACTACTCGCAGCTTC 59.829 55.000 0.00 0.00 38.70 3.86
596 597 0.109226 GTTCCGACTACTCGCAGCTT 60.109 55.000 0.00 0.00 38.70 3.74
597 598 0.961358 AGTTCCGACTACTCGCAGCT 60.961 55.000 0.00 0.00 38.70 4.24
598 599 0.523757 GAGTTCCGACTACTCGCAGC 60.524 60.000 0.00 0.00 38.70 5.25
599 600 1.088306 AGAGTTCCGACTACTCGCAG 58.912 55.000 0.00 0.00 45.22 5.18
600 601 2.005451 GTAGAGTTCCGACTACTCGCA 58.995 52.381 0.00 0.00 45.22 5.10
601 602 1.005137 CGTAGAGTTCCGACTACTCGC 60.005 57.143 0.00 0.00 45.22 5.03
602 603 1.592081 CCGTAGAGTTCCGACTACTCG 59.408 57.143 0.00 0.00 45.22 4.18
603 604 2.626840 ACCGTAGAGTTCCGACTACTC 58.373 52.381 0.00 0.00 41.83 2.59
604 605 2.777832 ACCGTAGAGTTCCGACTACT 57.222 50.000 0.00 0.00 37.43 2.57
605 606 3.839051 AAACCGTAGAGTTCCGACTAC 57.161 47.619 0.00 0.00 35.88 2.73
606 607 5.240623 TGTTTAAACCGTAGAGTTCCGACTA 59.759 40.000 15.59 0.00 35.88 2.59
607 608 4.037923 TGTTTAAACCGTAGAGTTCCGACT 59.962 41.667 15.59 0.00 39.32 4.18
608 609 4.148871 GTGTTTAAACCGTAGAGTTCCGAC 59.851 45.833 15.59 0.00 0.00 4.79
609 610 4.298332 GTGTTTAAACCGTAGAGTTCCGA 58.702 43.478 15.59 0.00 0.00 4.55
610 611 3.429881 GGTGTTTAAACCGTAGAGTTCCG 59.570 47.826 15.59 0.00 0.00 4.30
611 612 4.635223 AGGTGTTTAAACCGTAGAGTTCC 58.365 43.478 15.59 4.75 45.53 3.62
612 613 5.559608 GCAAGGTGTTTAAACCGTAGAGTTC 60.560 44.000 15.59 0.00 45.53 3.01
613 614 4.274214 GCAAGGTGTTTAAACCGTAGAGTT 59.726 41.667 15.59 0.00 45.53 3.01
614 615 3.811497 GCAAGGTGTTTAAACCGTAGAGT 59.189 43.478 15.59 0.00 45.53 3.24
615 616 4.062991 AGCAAGGTGTTTAAACCGTAGAG 58.937 43.478 15.59 3.19 45.53 2.43
616 617 4.060205 GAGCAAGGTGTTTAAACCGTAGA 58.940 43.478 15.59 0.00 45.53 2.59
617 618 3.120786 CGAGCAAGGTGTTTAAACCGTAG 60.121 47.826 15.59 3.67 45.53 3.51
618 619 2.801679 CGAGCAAGGTGTTTAAACCGTA 59.198 45.455 15.59 0.00 45.53 4.02
619 620 1.600485 CGAGCAAGGTGTTTAAACCGT 59.400 47.619 15.59 6.12 45.53 4.83
620 621 1.662026 GCGAGCAAGGTGTTTAAACCG 60.662 52.381 15.59 9.87 45.53 4.44
621 622 1.335597 GGCGAGCAAGGTGTTTAAACC 60.336 52.381 15.59 1.86 40.85 3.27
622 623 1.335496 TGGCGAGCAAGGTGTTTAAAC 59.665 47.619 11.54 11.54 0.00 2.01
623 624 1.681538 TGGCGAGCAAGGTGTTTAAA 58.318 45.000 0.00 0.00 0.00 1.52
624 625 1.810151 GATGGCGAGCAAGGTGTTTAA 59.190 47.619 0.00 0.00 0.00 1.52
625 626 1.448985 GATGGCGAGCAAGGTGTTTA 58.551 50.000 0.00 0.00 0.00 2.01
626 627 1.244019 GGATGGCGAGCAAGGTGTTT 61.244 55.000 0.00 0.00 0.00 2.83
627 628 1.675641 GGATGGCGAGCAAGGTGTT 60.676 57.895 0.00 0.00 0.00 3.32
628 629 1.264749 TAGGATGGCGAGCAAGGTGT 61.265 55.000 0.00 0.00 0.00 4.16
629 630 0.107703 TTAGGATGGCGAGCAAGGTG 60.108 55.000 0.00 0.00 0.00 4.00
630 631 0.618458 TTTAGGATGGCGAGCAAGGT 59.382 50.000 0.00 0.00 0.00 3.50
631 632 1.750193 TTTTAGGATGGCGAGCAAGG 58.250 50.000 0.00 0.00 0.00 3.61
651 652 1.111277 AAGGCGAGCAAGGTGTTTTT 58.889 45.000 0.00 0.00 0.00 1.94
652 653 0.385390 CAAGGCGAGCAAGGTGTTTT 59.615 50.000 0.00 0.00 0.00 2.43
653 654 1.455383 CCAAGGCGAGCAAGGTGTTT 61.455 55.000 0.00 0.00 0.00 2.83
654 655 1.898574 CCAAGGCGAGCAAGGTGTT 60.899 57.895 0.00 0.00 0.00 3.32
655 656 2.281761 CCAAGGCGAGCAAGGTGT 60.282 61.111 0.00 0.00 0.00 4.16
656 657 3.058160 CCCAAGGCGAGCAAGGTG 61.058 66.667 0.00 0.00 0.00 4.00
657 658 3.249189 TCCCAAGGCGAGCAAGGT 61.249 61.111 0.00 0.00 0.00 3.50
658 659 2.437359 CTCCCAAGGCGAGCAAGG 60.437 66.667 0.00 0.00 0.00 3.61
659 660 1.302832 AACTCCCAAGGCGAGCAAG 60.303 57.895 0.00 0.00 0.00 4.01
660 661 1.600636 CAACTCCCAAGGCGAGCAA 60.601 57.895 0.00 0.00 0.00 3.91
661 662 2.032528 CAACTCCCAAGGCGAGCA 59.967 61.111 0.00 0.00 0.00 4.26
662 663 2.747855 CCAACTCCCAAGGCGAGC 60.748 66.667 0.00 0.00 0.00 5.03
663 664 1.915078 ATCCCAACTCCCAAGGCGAG 61.915 60.000 0.00 3.87 0.00 5.03
664 665 0.619255 TATCCCAACTCCCAAGGCGA 60.619 55.000 0.00 0.00 0.00 5.54
665 666 0.474184 ATATCCCAACTCCCAAGGCG 59.526 55.000 0.00 0.00 0.00 5.52
666 667 1.777272 AGATATCCCAACTCCCAAGGC 59.223 52.381 0.00 0.00 0.00 4.35
667 668 3.495100 CGAAGATATCCCAACTCCCAAGG 60.495 52.174 0.00 0.00 0.00 3.61
668 669 3.495100 CCGAAGATATCCCAACTCCCAAG 60.495 52.174 0.00 0.00 0.00 3.61
669 670 2.438021 CCGAAGATATCCCAACTCCCAA 59.562 50.000 0.00 0.00 0.00 4.12
670 671 2.047061 CCGAAGATATCCCAACTCCCA 58.953 52.381 0.00 0.00 0.00 4.37
671 672 1.348036 CCCGAAGATATCCCAACTCCC 59.652 57.143 0.00 0.00 0.00 4.30
672 673 1.348036 CCCCGAAGATATCCCAACTCC 59.652 57.143 0.00 0.00 0.00 3.85
673 674 2.326428 TCCCCGAAGATATCCCAACTC 58.674 52.381 0.00 0.00 0.00 3.01
674 675 2.489528 TCCCCGAAGATATCCCAACT 57.510 50.000 0.00 0.00 0.00 3.16
675 676 2.704065 TCTTCCCCGAAGATATCCCAAC 59.296 50.000 0.00 0.00 42.78 3.77
676 677 3.054779 TCTTCCCCGAAGATATCCCAA 57.945 47.619 0.00 0.00 42.78 4.12
677 678 2.787339 TCTTCCCCGAAGATATCCCA 57.213 50.000 0.00 0.00 42.78 4.37
678 679 3.240302 TCTTCTTCCCCGAAGATATCCC 58.760 50.000 5.00 0.00 46.20 3.85
689 690 3.873952 CAGATCGAAACATCTTCTTCCCC 59.126 47.826 0.00 0.00 30.07 4.81
708 709 0.466543 ACACGTGTTTAGCACCCAGA 59.533 50.000 17.22 0.00 44.97 3.86
724 725 3.452627 AGACCCCACTCATAAGATGACAC 59.547 47.826 0.00 0.00 35.06 3.67
770 771 5.236695 GCTCCGAAAATAAATCCTACCAGAC 59.763 44.000 0.00 0.00 0.00 3.51
774 775 4.457466 TGGCTCCGAAAATAAATCCTACC 58.543 43.478 0.00 0.00 0.00 3.18
821 3095 4.477975 GCGGACTCTCGTCGGTGG 62.478 72.222 0.00 0.00 41.15 4.61
838 3112 3.471244 GAGGCAGATCGGTCGACGG 62.471 68.421 16.37 16.37 44.45 4.79
874 3148 1.930251 CCCACCTCTGAGAACTCTGA 58.070 55.000 6.17 10.12 36.39 3.27
945 3219 2.092914 CCGAGGGAGAAGTAATTGCCTT 60.093 50.000 0.00 0.00 35.04 4.35
1240 3514 2.328099 CGCAGTCCTGTTCCCTTGC 61.328 63.158 0.00 0.00 0.00 4.01
1279 3553 3.479269 CTTCTTGCCGCCGTCGAC 61.479 66.667 5.18 5.18 38.10 4.20
1302 3576 0.471617 AGTGGTAGCAGGGCATCATC 59.528 55.000 0.00 0.00 0.00 2.92
1362 3636 2.513204 CAGACAGGGCAGATGCGG 60.513 66.667 0.00 0.00 43.26 5.69
1415 3689 1.457346 CAGTCCCAGATCCTTGTTGC 58.543 55.000 0.00 0.00 0.00 4.17
1425 3702 0.979665 CTTTCTCAGGCAGTCCCAGA 59.020 55.000 0.00 0.00 35.39 3.86
1495 3772 1.630244 CTAGCACAGTCGTGGCTTGC 61.630 60.000 0.00 1.96 43.81 4.01
1565 3843 6.427150 GTTCAAACTACAAGCTTTTGATCGA 58.573 36.000 10.49 0.00 38.65 3.59
1603 3881 9.209175 GAAGATCTACTAAGTTTTCAAGCTGAA 57.791 33.333 0.00 0.00 34.03 3.02
1624 3902 9.121658 TCGTATTGTACATAACAGAGAGAAGAT 57.878 33.333 0.00 0.00 39.87 2.40
1649 3927 8.415192 TGATGCATAAAGATGAAATTTTGCTC 57.585 30.769 0.00 5.02 34.73 4.26
1662 3940 8.587608 AGAAAATGAAGGTTTGATGCATAAAGA 58.412 29.630 0.00 0.00 0.00 2.52
1791 4077 5.125097 GCCATAAATAAGGATCATGCTCTGG 59.875 44.000 0.00 0.00 0.00 3.86
2059 4462 2.046283 CTTTCGCGGGAAAAAGGAAC 57.954 50.000 25.25 0.00 41.38 3.62
2070 4473 0.673644 AGAATGTGGTCCTTTCGCGG 60.674 55.000 6.13 0.00 33.57 6.46
2071 4474 0.443869 CAGAATGTGGTCCTTTCGCG 59.556 55.000 0.00 0.00 33.57 5.87
2074 4477 1.177401 GGGCAGAATGTGGTCCTTTC 58.823 55.000 0.00 0.00 39.31 2.62
2146 4549 5.536554 AGGCGATTGATAAAATAGATGCG 57.463 39.130 0.00 0.00 0.00 4.73
2147 4550 9.118236 GTTTAAGGCGATTGATAAAATAGATGC 57.882 33.333 0.00 0.00 0.00 3.91
2151 4554 9.233232 GGTTGTTTAAGGCGATTGATAAAATAG 57.767 33.333 0.00 0.00 0.00 1.73
2153 4556 7.607250 TGGTTGTTTAAGGCGATTGATAAAAT 58.393 30.769 0.00 0.00 0.00 1.82
2154 4557 6.982852 TGGTTGTTTAAGGCGATTGATAAAA 58.017 32.000 0.00 0.00 0.00 1.52
2155 4558 6.576662 TGGTTGTTTAAGGCGATTGATAAA 57.423 33.333 0.00 0.00 0.00 1.40
2156 4559 6.405286 CCATGGTTGTTTAAGGCGATTGATAA 60.405 38.462 2.57 0.00 0.00 1.75
2157 4560 5.067153 CCATGGTTGTTTAAGGCGATTGATA 59.933 40.000 2.57 0.00 0.00 2.15
2158 4561 4.142182 CCATGGTTGTTTAAGGCGATTGAT 60.142 41.667 2.57 0.00 0.00 2.57
2159 4562 3.192422 CCATGGTTGTTTAAGGCGATTGA 59.808 43.478 2.57 0.00 0.00 2.57
2160 4563 3.510719 CCATGGTTGTTTAAGGCGATTG 58.489 45.455 2.57 0.00 0.00 2.67
2161 4564 2.094234 GCCATGGTTGTTTAAGGCGATT 60.094 45.455 14.67 0.00 31.88 3.34
2165 4568 0.885196 TCGCCATGGTTGTTTAAGGC 59.115 50.000 14.67 0.00 38.73 4.35
2192 4595 6.590656 TCCAATATTCCACTTAATGTCCCT 57.409 37.500 0.00 0.00 0.00 4.20
2249 4652 1.345741 CTTTCTCCAGCTGAGTGGTCA 59.654 52.381 17.39 0.00 42.12 4.02
2277 4680 0.693049 AGCAGGTTAGGTCCTTGGTG 59.307 55.000 0.00 0.00 35.37 4.17
2278 4681 0.984995 GAGCAGGTTAGGTCCTTGGT 59.015 55.000 0.00 0.00 35.37 3.67
2309 4712 6.090628 GCAAAGAAGACTTCTAGTGTCTCATG 59.909 42.308 18.00 14.35 43.16 3.07
2320 4723 3.477210 AACTCCGCAAAGAAGACTTCT 57.523 42.857 12.12 12.12 43.15 2.85
2322 4725 3.809905 AGAAACTCCGCAAAGAAGACTT 58.190 40.909 0.00 0.00 38.05 3.01
2345 4748 2.045536 GGGCTGCCCTTGAGTCTG 60.046 66.667 30.42 0.00 41.34 3.51
2391 4794 7.388500 CCTTCCGTAACATCCTTTTAGTTGTAA 59.612 37.037 0.00 0.00 0.00 2.41
2393 4796 5.704053 CCTTCCGTAACATCCTTTTAGTTGT 59.296 40.000 0.00 0.00 0.00 3.32
2401 4804 2.304761 TGAAGCCTTCCGTAACATCCTT 59.695 45.455 1.21 0.00 0.00 3.36
2402 4805 1.906574 TGAAGCCTTCCGTAACATCCT 59.093 47.619 1.21 0.00 0.00 3.24
2403 4806 2.396590 TGAAGCCTTCCGTAACATCC 57.603 50.000 1.21 0.00 0.00 3.51
2404 4807 4.034510 CAGATTGAAGCCTTCCGTAACATC 59.965 45.833 1.21 0.00 0.00 3.06
2407 4810 3.596214 TCAGATTGAAGCCTTCCGTAAC 58.404 45.455 1.21 0.00 0.00 2.50
2408 4811 3.973206 TCAGATTGAAGCCTTCCGTAA 57.027 42.857 1.21 0.00 0.00 3.18
2409 4812 3.706594 AGATCAGATTGAAGCCTTCCGTA 59.293 43.478 1.21 0.00 0.00 4.02
2410 4813 2.503356 AGATCAGATTGAAGCCTTCCGT 59.497 45.455 1.21 0.00 0.00 4.69
2411 4814 3.191078 AGATCAGATTGAAGCCTTCCG 57.809 47.619 1.21 0.00 0.00 4.30
2412 4815 3.882288 GGAAGATCAGATTGAAGCCTTCC 59.118 47.826 15.67 15.67 40.59 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.