AutoCloner

Multiple sequence alignment - TraesCS5D01G095700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G095700	chr5D	100.000	6355	0	0	1	6355	105116144	105109790	0.000000e+00	11736
1	TraesCS5D01G095700	chr5D	100.000	2803	0	0	6931	9733	105109214	105106412	0.000000e+00	5177
2	TraesCS5D01G095700	chr5D	87.273	440	31	12	5053	5475	67700220	67699789	6.840000e-131	479
3	TraesCS5D01G095700	chr5D	87.647	170	13	5	5051	5213	249160130	249159962	3.590000e-44	191
4	TraesCS5D01G095700	chr5B	98.316	3800	38	11	2569	6355	115084442	115080656	0.000000e+00	6639
5	TraesCS5D01G095700	chr5B	98.897	1723	15	3	8012	9733	115079115	115077396	0.000000e+00	3073
6	TraesCS5D01G095700	chr5B	97.156	1758	35	8	828	2573	115091807	115090053	0.000000e+00	2955
7	TraesCS5D01G095700	chr5B	97.955	1076	12	3	6931	7999	115080623	115079551	0.000000e+00	1857
8	TraesCS5D01G095700	chr5A	97.687	2680	42	9	3635	6307	109287431	109284765	0.000000e+00	4588
9	TraesCS5D01G095700	chr5A	95.908	2468	36	13	6931	9369	109284730	109282299	0.000000e+00	3938
10	TraesCS5D01G095700	chr5A	97.039	1182	31	2	828	2009	109291582	109290405	0.000000e+00	1986
11	TraesCS5D01G095700	chr5A	97.459	1102	20	4	2006	3099	109289338	109288237	0.000000e+00	1873
12	TraesCS5D01G095700	chr5A	97.148	561	14	2	3098	3658	109288010	109287452	0.000000e+00	946
13	TraesCS5D01G095700	chr5A	99.042	313	3	0	9419	9731	109282301	109281989	6.600000e-156	562
14	TraesCS5D01G095700	chr5A	89.773	88	9	0	1939	2026	364359915	364359828	7.990000e-21	113
15	TraesCS5D01G095700	chr5A	88.372	86	10	0	1941	2026	597290419	597290334	4.810000e-18	104
16	TraesCS5D01G095700	chr3D	95.363	841	23	10	1	829	4190904	4190068	0.000000e+00	1323
17	TraesCS5D01G095700	chr3D	95.318	833	28	10	1	823	607268707	607267876	0.000000e+00	1312
18	TraesCS5D01G095700	chr3D	88.679	212	18	3	5051	5256	608151281	608151070	4.510000e-63	254
19	TraesCS5D01G095700	chr1D	95.422	830	29	7	1	822	366486439	366485611	0.000000e+00	1314
20	TraesCS5D01G095700	chr1D	87.946	224	18	5	5256	5476	93835720	93835937	1.250000e-63	255
21	TraesCS5D01G095700	chr1D	97.222	72	2	0	1939	2010	17195804	17195733	1.330000e-23	122
22	TraesCS5D01G095700	chr4D	95.383	823	31	6	1	822	346121199	346122015	0.000000e+00	1303
23	TraesCS5D01G095700	chr4A	94.958	833	37	3	1	829	248172327	248171496	0.000000e+00	1301
24	TraesCS5D01G095700	chr2B	94.958	833	34	6	1	825	754933760	754934592	0.000000e+00	1299
25	TraesCS5D01G095700	chr2A	94.958	833	30	11	1	829	158606330	158605506	0.000000e+00	1295
26	TraesCS5D01G095700	chr1B	94.193	861	31	13	1	843	182642794	182641935	0.000000e+00	1295
27	TraesCS5D01G095700	chr1B	87.731	432	40	7	5053	5475	363225708	363225281	8.780000e-135	492
28	TraesCS5D01G095700	chr1B	87.500	432	39	8	5053	5475	296602301	296601876	1.470000e-132	484
29	TraesCS5D01G095700	chr1B	77.869	122	26	1	2944	3064	3266030	3265909	3.770000e-09	75
30	TraesCS5D01G095700	chr3A	94.235	850	39	6	1	841	7289273	7288425	0.000000e+00	1290
31	TraesCS5D01G095700	chr3B	89.189	333	27	6	5147	5475	608371667	608371994	3.270000e-109	407
32	TraesCS5D01G095700	chr3B	89.773	88	8	1	1944	2031	405231360	405231274	2.870000e-20	111
33	TraesCS5D01G095700	chr7D	87.349	332	35	6	4324	4650	65628692	65628363	3.320000e-99	374
34	TraesCS5D01G095700	chr7D	90.244	82	7	1	1943	2023	620736039	620735958	1.340000e-18	106
35	TraesCS5D01G095700	chr7B	87.576	330	31	7	5151	5475	386252614	386252938	3.320000e-99	374
36	TraesCS5D01G095700	chr7B	88.839	224	18	3	5256	5476	326396359	326396578	1.610000e-67	268
37	TraesCS5D01G095700	chr7B	90.244	82	7	1	1943	2023	715854800	715854881	1.340000e-18	106
38	TraesCS5D01G095700	chr4B	90.749	227	14	4	5053	5273	302805169	302804944	7.390000e-76	296
39	TraesCS5D01G095700	chr7A	88.393	224	19	5	5256	5476	482532499	482532280	7.500000e-66	263
40	TraesCS5D01G095700	chr6A	87.791	172	13	5	5049	5213	388055065	388055235	2.770000e-45	195
41	TraesCS5D01G095700	chr6B	87.778	90	10	1	1935	2023	63751672	63751583	4.810000e-18	104

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G095700	chr5D	105106412	105116144	9732	True	8456.500000	11736	100.000000	1	9733	2	chr5D.!!$R3	9732
1	TraesCS5D01G095700	chr5B	115077396	115084442	7046	True	3856.333333	6639	98.389333	2569	9733	3	chr5B.!!$R2	7164
2	TraesCS5D01G095700	chr5B	115090053	115091807	1754	True	2955.000000	2955	97.156000	828	2573	1	chr5B.!!$R1	1745
3	TraesCS5D01G095700	chr5A	109281989	109291582	9593	True	2315.500000	4588	97.380500	828	9731	6	chr5A.!!$R3	8903
4	TraesCS5D01G095700	chr3D	4190068	4190904	836	True	1323.000000	1323	95.363000	1	829	1	chr3D.!!$R1	828
5	TraesCS5D01G095700	chr3D	607267876	607268707	831	True	1312.000000	1312	95.318000	1	823	1	chr3D.!!$R2	822
6	TraesCS5D01G095700	chr1D	366485611	366486439	828	True	1314.000000	1314	95.422000	1	822	1	chr1D.!!$R2	821
7	TraesCS5D01G095700	chr4D	346121199	346122015	816	False	1303.000000	1303	95.383000	1	822	1	chr4D.!!$F1	821
8	TraesCS5D01G095700	chr4A	248171496	248172327	831	True	1301.000000	1301	94.958000	1	829	1	chr4A.!!$R1	828
9	TraesCS5D01G095700	chr2B	754933760	754934592	832	False	1299.000000	1299	94.958000	1	825	1	chr2B.!!$F1	824
10	TraesCS5D01G095700	chr2A	158605506	158606330	824	True	1295.000000	1295	94.958000	1	829	1	chr2A.!!$R1	828
11	TraesCS5D01G095700	chr1B	182641935	182642794	859	True	1295.000000	1295	94.193000	1	843	1	chr1B.!!$R2	842
12	TraesCS5D01G095700	chr3A	7288425	7289273	848	True	1290.000000	1290	94.235000	1	841	1	chr3A.!!$R1	840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
588	619	0.254107	AGGGAGAGGGAGGAGAGAGT	60.254	60.000	0.00	0.00	0.00	3.24	F
876	910	2.122167	AGAGGATCGTGCTCCGTCC	61.122	63.158	0.00	8.66	42.67	4.79	F
1601	1642	0.661552	GCGCGGACTACACTATGAGA	59.338	55.000	8.83	0.00	0.00	3.27	F
3396	4746	1.070957	GGGGACTGCGGGTAATAGC	59.929	63.158	0.00	0.00	0.00	2.97	F
3931	5326	0.709992	TTCTTGCCCCCATTAGCCTT	59.290	50.000	0.00	0.00	0.00	4.35	F
4742	6138	3.631250	TGGACTGCAAGGAAAGTTTCTT	58.369	40.909	15.05	4.91	39.30	2.52	F
5711	7113	7.444792	AGCTGCTCTATGAGGAATTAAGATTTG	59.555	37.037	0.00	0.00	27.87	2.32	F
6972	8382	0.180642	TTTGTTCCTACGTGGGCACA	59.819	50.000	18.82	18.82	36.20	4.57	F
7873	9301	2.327325	TAGAAAGGAGCTGAGGTGGT	57.673	50.000	0.00	0.00	0.00	4.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1601	1642	2.880890	GCTGCCATCGGAGTTGAATATT	59.119	45.455	0.00	0.00	0.00	1.28	R
2927	4049	0.183492	TGCAGAGCCAGGAACAAACT	59.817	50.000	0.00	0.00	0.00	2.66	R
3407	4757	0.535102	CCAGCGAGGACACAACCTTT	60.535	55.000	0.00	0.00	40.73	3.11	R
5392	6792	1.205893	GAGTTGCTCCTACAGTCCAGG	59.794	57.143	0.00	0.00	34.20	4.45	R
5953	7355	2.175202	TGCCCTTTCAGTTTGTGTTGT	58.825	42.857	0.00	0.00	0.00	3.32	R
6003	7405	6.901300	TCCCTAACTCCATTAGTATTGTCACT	59.099	38.462	0.00	0.00	39.01	3.41	R
7257	8667	0.773644	AGGCTTGGAGGAAAAGAGCA	59.226	50.000	0.00	0.00	35.12	4.26	R
7891	9319	0.831966	TGACTGTGGTTAACCGTGGT	59.168	50.000	19.65	16.19	39.43	4.16	R
8914	10777	4.466726	TGATCAGATGATAGCTCCAGGATG	59.533	45.833	0.00	0.00	34.37	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	27	6.973460	TTTTACATTTTTCGAAACCCCCTA	57.027	33.333	10.79	0.00	0.00	3.53
442	453	5.392919	CGATCCAGATTGCAAATAAACACCA	60.393	40.000	1.71	0.00	0.00	4.17
559	570	2.091541	AGTGAGAGAAAGCGAGAGAGG	58.908	52.381	0.00	0.00	0.00	3.69
588	619	0.254107	AGGGAGAGGGAGGAGAGAGT	60.254	60.000	0.00	0.00	0.00	3.24
723	755	7.436080	ACAAATATGATGCCTCGCAAAAATAAG	59.564	33.333	0.00	0.00	43.62	1.73
790	822	5.057149	AGAGCGTGTGTTATGTTTTCTCTT	58.943	37.500	0.00	0.00	0.00	2.85
859	893	3.958147	AAGTCCACCCGATGCGCAG	62.958	63.158	18.32	4.18	0.00	5.18
876	910	2.122167	AGAGGATCGTGCTCCGTCC	61.122	63.158	0.00	8.66	42.67	4.79
920	956	2.444256	GCCCAGATAACCCTCGCCT	61.444	63.158	0.00	0.00	0.00	5.52
1322	1358	2.457366	TGCTTTTCCCTCTCTCGTTC	57.543	50.000	0.00	0.00	0.00	3.95
1345	1381	3.537580	TCTTTTCAAGCTACCACACGTT	58.462	40.909	0.00	0.00	0.00	3.99
1601	1642	0.661552	GCGCGGACTACACTATGAGA	59.338	55.000	8.83	0.00	0.00	3.27
1675	1716	2.097466	CACTGAATAACGTTGGGCCATC	59.903	50.000	7.26	5.61	0.00	3.51
1883	1924	7.906199	ATCCAGTCTCTGTAGCTAGTTTTAT	57.094	36.000	0.00	0.00	0.00	1.40
1884	1925	8.998277	ATCCAGTCTCTGTAGCTAGTTTTATA	57.002	34.615	0.00	0.00	0.00	0.98
1885	1926	8.453238	TCCAGTCTCTGTAGCTAGTTTTATAG	57.547	38.462	0.00	0.00	0.00	1.31
2321	3435	3.347216	AGTTGTTCACTTGTTCTGCACT	58.653	40.909	0.00	0.00	27.32	4.40
3012	4134	7.281549	TCCCTCAAGTTTACAAAAAGTAGACAC	59.718	37.037	0.00	0.00	39.58	3.67
3396	4746	1.070957	GGGGACTGCGGGTAATAGC	59.929	63.158	0.00	0.00	0.00	2.97
3399	4749	3.625099	ACTGCGGGTAATAGCGGT	58.375	55.556	0.00	0.00	46.93	5.68
3407	4757	1.227147	GTAATAGCGGTGGCGCTGA	60.227	57.895	11.86	0.00	45.56	4.26
3473	4823	3.202829	TGAACGGCTGTAGGAAAAAGT	57.797	42.857	0.00	0.00	0.00	2.66
3772	5166	3.636300	AGCATTGTTGAGTAACTGGCAAA	59.364	39.130	0.00	0.00	37.68	3.68
3931	5326	0.709992	TTCTTGCCCCCATTAGCCTT	59.290	50.000	0.00	0.00	0.00	4.35
4449	5845	6.839134	AGTTTTCTATGACCAAAAGGTCCTTT	59.161	34.615	11.33	11.33	38.04	3.11
4499	5895	5.292765	TGTGAACTTCTGTTTTGTTTTGCA	58.707	33.333	0.00	0.00	36.39	4.08
4706	6102	7.776107	TCTTCAATAAATTTGTGACAACACCA	58.224	30.769	0.00	0.00	45.40	4.17
4742	6138	3.631250	TGGACTGCAAGGAAAGTTTCTT	58.369	40.909	15.05	4.91	39.30	2.52
5711	7113	7.444792	AGCTGCTCTATGAGGAATTAAGATTTG	59.555	37.037	0.00	0.00	27.87	2.32
5769	7171	9.825972	ATTATAATCAGCGTGCACAAAATATAC	57.174	29.630	18.64	0.00	0.00	1.47
5953	7355	8.757307	ATCCTGACTGGGAAATATTATTAGGA	57.243	34.615	0.00	0.00	39.02	2.94
6003	7405	8.402472	CACAGATTTAACAGTTTTACCTGACAA	58.598	33.333	10.52	0.00	36.30	3.18
6004	7406	8.621286	ACAGATTTAACAGTTTTACCTGACAAG	58.379	33.333	10.52	0.00	36.30	3.16
6005	7407	8.621286	CAGATTTAACAGTTTTACCTGACAAGT	58.379	33.333	0.00	0.00	36.30	3.16
6006	7408	8.621286	AGATTTAACAGTTTTACCTGACAAGTG	58.379	33.333	0.00	0.00	36.30	3.16
6007	7409	7.925043	TTTAACAGTTTTACCTGACAAGTGA	57.075	32.000	0.00	0.00	36.30	3.41
6008	7410	5.813080	AACAGTTTTACCTGACAAGTGAC	57.187	39.130	0.00	0.00	36.30	3.67
6009	7411	4.839121	ACAGTTTTACCTGACAAGTGACA	58.161	39.130	0.00	0.00	36.30	3.58
6171	7573	3.391965	TCAATACAGTTGTTTACGGCGT	58.608	40.909	19.64	19.64	0.00	5.68
6232	7634	6.212888	AGCCCTGCTGTTAATAATTCTTTG	57.787	37.500	0.00	0.00	37.57	2.77
6972	8382	0.180642	TTTGTTCCTACGTGGGCACA	59.819	50.000	18.82	18.82	36.20	4.57
7257	8667	5.221244	GGAACAGCAGATTACCTTGTTGTTT	60.221	40.000	7.85	0.00	32.58	2.83
7727	9154	5.689068	GCTCAAAATTCAAACTGTCCTGAAG	59.311	40.000	10.03	0.00	35.14	3.02
7873	9301	2.327325	TAGAAAGGAGCTGAGGTGGT	57.673	50.000	0.00	0.00	0.00	4.16
7891	9319	1.310904	GTGGGCACGTAGGACAAAAA	58.689	50.000	0.00	0.00	0.00	1.94
7951	9386	0.250295	CGTGGTTTTGAGAGCTGGGA	60.250	55.000	0.00	0.00	0.00	4.37
7971	9406	5.123936	GGGAGTTGTCACTTAAACTTCACT	58.876	41.667	0.00	0.00	36.77	3.41
8169	10032	9.667107	TTTCTCTGACCCAATATTTAACTAGTG	57.333	33.333	0.00	0.00	0.00	2.74
8329	10192	5.968254	TGAGTTCACATTATGCATGCAAAT	58.032	33.333	26.68	20.69	36.14	2.32
8914	10777	5.768317	TGTTTGCTAGTTAACATTTCTGGC	58.232	37.500	8.61	0.78	36.48	4.85
9339	11202	0.744874	TCAGATTTAGCCCCTCGACG	59.255	55.000	0.00	0.00	0.00	5.12
9369	11232	1.952296	GACATGTGATGGCCTTGGATC	59.048	52.381	1.15	0.00	29.82	3.36
9633	11496	0.831307	GGGGTCCACAGTCATCCTAC	59.169	60.000	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	27	6.485313	TCCGCGGATGAATTATCTAAAACATT	59.515	34.615	27.28	0.00	36.03	2.71
559	570	0.478507	CCCTCTCCCTCTCTCTCTCC	59.521	65.000	0.00	0.00	0.00	3.71
588	619	1.560146	TCCTAAGGCGTCTCTCTCTCA	59.440	52.381	0.00	0.00	0.00	3.27
645	677	1.153369	CGATGGCCTCGGTGTTCAT	60.153	57.895	14.53	0.00	43.82	2.57
723	755	2.127708	ACCACAATAGGTCCATCTCCC	58.872	52.381	0.00	0.00	37.28	4.30
843	877	4.451150	TCTGCGCATCGGGTGGAC	62.451	66.667	12.24	0.00	0.00	4.02
897	933	1.760613	CGAGGGTTATCTGGGCTAACA	59.239	52.381	0.00	0.00	31.98	2.41
920	956	1.327303	GTTGGCCCACTGTCATTGAA	58.673	50.000	0.00	0.00	0.00	2.69
1078	1114	1.675310	TTGGCAGCGAAGGATGTGG	60.675	57.895	0.00	0.00	0.00	4.17
1345	1381	3.181428	TGTCACCCCCAAATGTATTCACA	60.181	43.478	0.00	0.00	39.52	3.58
1396	1437	3.908382	GCAACAGCACAGAATCTAAAACG	59.092	43.478	0.00	0.00	0.00	3.60
1601	1642	2.880890	GCTGCCATCGGAGTTGAATATT	59.119	45.455	0.00	0.00	0.00	1.28
1675	1716	5.470098	CCAGATAACCCATAACTCATTTCCG	59.530	44.000	0.00	0.00	0.00	4.30
2927	4049	0.183492	TGCAGAGCCAGGAACAAACT	59.817	50.000	0.00	0.00	0.00	2.66
3396	4746	2.978010	AACCTTTCAGCGCCACCG	60.978	61.111	2.29	0.00	37.57	4.94
3399	4749	1.444119	GACACAACCTTTCAGCGCCA	61.444	55.000	2.29	0.00	0.00	5.69
3407	4757	0.535102	CCAGCGAGGACACAACCTTT	60.535	55.000	0.00	0.00	40.73	3.11
3455	4805	5.009310	CCTTAAACTTTTTCCTACAGCCGTT	59.991	40.000	0.00	0.00	0.00	4.44
3772	5166	5.783100	CACACTGAAAATTGTGCAAGTTT	57.217	34.783	9.62	9.62	40.67	2.66
3931	5326	2.158219	TGGTAGGAAGGGAACACTCTCA	60.158	50.000	0.00	0.00	0.00	3.27
4449	5845	3.932822	TGTTAGGCGATGTCTTTGCTAA	58.067	40.909	0.00	0.00	34.85	3.09
4499	5895	1.920610	AGGCAGAAAAGCTTGCAGAT	58.079	45.000	10.14	0.00	34.17	2.90
4706	6102	3.056607	GCAGTCCAAAGGCATACAACATT	60.057	43.478	0.00	0.00	0.00	2.71
4742	6138	8.504812	TTGAGCAGTAACAATATGCATCTTAA	57.495	30.769	0.19	0.00	42.45	1.85
5392	6792	1.205893	GAGTTGCTCCTACAGTCCAGG	59.794	57.143	0.00	0.00	34.20	4.45
5769	7171	8.197439	AGAAGGTCCTAACAAAACAAAGAAATG	58.803	33.333	0.00	0.00	0.00	2.32
5953	7355	2.175202	TGCCCTTTCAGTTTGTGTTGT	58.825	42.857	0.00	0.00	0.00	3.32
6003	7405	6.901300	TCCCTAACTCCATTAGTATTGTCACT	59.099	38.462	0.00	0.00	39.01	3.41
6004	7406	7.120923	TCCCTAACTCCATTAGTATTGTCAC	57.879	40.000	0.00	0.00	39.01	3.67
6005	7407	7.931015	ATCCCTAACTCCATTAGTATTGTCA	57.069	36.000	0.00	0.00	39.01	3.58
6006	7408	9.708092	GTAATCCCTAACTCCATTAGTATTGTC	57.292	37.037	0.00	0.00	39.01	3.18
6007	7409	9.220906	TGTAATCCCTAACTCCATTAGTATTGT	57.779	33.333	0.00	0.00	39.01	2.71
6008	7410	9.712305	CTGTAATCCCTAACTCCATTAGTATTG	57.288	37.037	0.00	0.00	39.01	1.90
6009	7411	8.881262	CCTGTAATCCCTAACTCCATTAGTATT	58.119	37.037	0.00	0.00	39.01	1.89
6189	7591	7.554476	CAGGGCTAGCTCTTCTTTATTTTAAGT	59.446	37.037	16.48	0.00	0.00	2.24
6972	8382	1.567357	GGAGGAGAGAAGCTGAGGTT	58.433	55.000	0.00	0.00	0.00	3.50
7257	8667	0.773644	AGGCTTGGAGGAAAAGAGCA	59.226	50.000	0.00	0.00	35.12	4.26
7487	8914	5.423931	TCTGAACTGCCACCTATGTTATGTA	59.576	40.000	0.00	0.00	0.00	2.29
7612	9039	2.242926	CTGTTCTGTCAGAGGACCTCA	58.757	52.381	23.60	0.29	43.65	3.86
7727	9154	9.825972	TTTGATTCTCAACGTTTTCTGAATATC	57.174	29.630	0.00	0.63	35.89	1.63
7873	9301	1.310904	GTTTTTGTCCTACGTGCCCA	58.689	50.000	0.00	0.00	0.00	5.36
7891	9319	0.831966	TGACTGTGGTTAACCGTGGT	59.168	50.000	19.65	16.19	39.43	4.16
7951	9386	8.258708	ACTCTTAGTGAAGTTTAAGTGACAACT	58.741	33.333	3.18	0.00	34.32	3.16
8851	10714	8.764524	ACATGTCTTGAAGATAAGTAACACTC	57.235	34.615	0.00	0.00	0.00	3.51
8914	10777	4.466726	TGATCAGATGATAGCTCCAGGATG	59.533	45.833	0.00	0.00	34.37	3.51
9339	11202	6.165577	AGGCCATCACATGTCAAAATTTTAC	58.834	36.000	5.01	3.76	0.00	2.01
9413	11276	8.777865	TCAATTGTTCTCTGACGAATCTAAAT	57.222	30.769	5.13	0.00	0.00	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.