Multiple sequence alignment - TraesCS5D01G094600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G094600 chr5D 100.000 7399 0 0 1 7399 104159813 104152415 0.000000e+00 13664
1 TraesCS5D01G094600 chr5D 92.182 2699 182 16 2214 4901 104473811 104471131 0.000000e+00 3788
2 TraesCS5D01G094600 chr5D 87.746 457 43 8 5996 6441 104470116 104469662 8.510000e-144 521
3 TraesCS5D01G094600 chr5D 94.656 262 14 0 7138 7399 421912902 421912641 2.490000e-109 407
4 TraesCS5D01G094600 chr5D 85.441 261 36 2 5932 6191 450611602 450611343 3.400000e-68 270
5 TraesCS5D01G094600 chr5D 80.476 210 27 9 6480 6681 104469647 104469444 1.660000e-31 148
6 TraesCS5D01G094600 chr5B 96.266 5061 133 19 3 5049 113562146 113557128 0.000000e+00 8248
7 TraesCS5D01G094600 chr5B 92.742 2604 169 14 2214 4815 113876628 113874043 0.000000e+00 3744
8 TraesCS5D01G094600 chr5B 93.592 2091 87 21 5085 7140 113557123 113555045 0.000000e+00 3075
9 TraesCS5D01G094600 chr5B 87.991 458 41 8 5996 6441 113873153 113872698 5.080000e-146 529
10 TraesCS5D01G094600 chr5A 96.925 4227 98 14 835 5049 94081823 94086029 0.000000e+00 7057
11 TraesCS5D01G094600 chr5A 92.186 2713 182 18 2198 4899 107392327 107389634 0.000000e+00 3808
12 TraesCS5D01G094600 chr5A 92.798 1583 68 19 5572 7140 94087530 94089080 0.000000e+00 2250
13 TraesCS5D01G094600 chr5A 90.205 439 38 3 370 807 94080089 94080523 1.080000e-157 568
14 TraesCS5D01G094600 chr5A 88.546 454 39 8 5999 6441 107388621 107388170 8.450000e-149 538
15 TraesCS5D01G094600 chr5A 90.836 371 32 2 1 370 94079556 94079925 5.160000e-136 496
16 TraesCS5D01G094600 chr5A 93.902 246 14 1 5310 5554 94087225 94087470 3.260000e-98 370
17 TraesCS5D01G094600 chr5A 93.671 237 14 1 5082 5317 94086031 94086267 3.280000e-93 353
18 TraesCS5D01G094600 chr2A 93.039 862 48 6 6272 7127 592314528 592315383 0.000000e+00 1249
19 TraesCS5D01G094600 chr2D 95.753 259 11 0 7141 7399 534494455 534494713 1.150000e-112 418
20 TraesCS5D01G094600 chr6D 95.367 259 12 0 7141 7399 254820551 254820293 5.340000e-111 412
21 TraesCS5D01G094600 chr1D 95.038 262 13 0 7138 7399 19874678 19874939 5.340000e-111 412
22 TraesCS5D01G094600 chr3D 95.000 260 13 0 7140 7399 42515721 42515462 6.910000e-110 409
23 TraesCS5D01G094600 chr3D 94.981 259 13 0 7141 7399 579578854 579579112 2.490000e-109 407
24 TraesCS5D01G094600 chr7D 94.981 259 13 0 7141 7399 320285484 320285742 2.490000e-109 407
25 TraesCS5D01G094600 chr7D 84.848 264 38 2 5929 6191 65501843 65502105 1.580000e-66 265
26 TraesCS5D01G094600 chr4D 94.961 258 13 0 7141 7398 364641567 364641824 8.940000e-109 405
27 TraesCS5D01G094600 chr4D 94.922 256 13 0 7141 7396 442183705 442183960 1.160000e-107 401
28 TraesCS5D01G094600 chr4D 85.824 261 33 3 5932 6191 465418464 465418207 2.630000e-69 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G094600 chr5D 104152415 104159813 7398 True 13664.000000 13664 100.000000 1 7399 1 chr5D.!!$R1 7398
1 TraesCS5D01G094600 chr5D 104469444 104473811 4367 True 1485.666667 3788 86.801333 2214 6681 3 chr5D.!!$R4 4467
2 TraesCS5D01G094600 chr5B 113555045 113562146 7101 True 5661.500000 8248 94.929000 3 7140 2 chr5B.!!$R1 7137
3 TraesCS5D01G094600 chr5B 113872698 113876628 3930 True 2136.500000 3744 90.366500 2214 6441 2 chr5B.!!$R2 4227
4 TraesCS5D01G094600 chr5A 107388170 107392327 4157 True 2173.000000 3808 90.366000 2198 6441 2 chr5A.!!$R1 4243
5 TraesCS5D01G094600 chr5A 94079556 94089080 9524 False 1849.000000 7057 93.056167 1 7140 6 chr5A.!!$F1 7139
6 TraesCS5D01G094600 chr2A 592314528 592315383 855 False 1249.000000 1249 93.039000 6272 7127 1 chr2A.!!$F1 855

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.173481 TCGCGAAGTCTGCTATTGCT 59.827 50.000 6.20 0.0 40.48 3.91 F
1249 2709 0.106318 GCCGTCTACCTCCCCTTCTA 60.106 60.000 0.00 0.0 0.00 2.10 F
1295 2755 1.032014 GAAGCTCATCGCCTCTCTCT 58.968 55.000 0.00 0.0 40.39 3.10 F
2409 3872 1.074566 CCAGGTTTCTTGCTCTCCCTT 59.925 52.381 0.00 0.0 0.00 3.95 F
4338 5801 1.177401 GGGCACTGGAGGACAAAATC 58.823 55.000 0.00 0.0 0.00 2.17 F
5827 8458 2.158564 AGGGCCACATCCAGTAATGATG 60.159 50.000 6.18 0.0 44.13 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 2934 0.527817 ATACTGCAAGCTACGGCGAC 60.528 55.000 16.62 1.94 44.37 5.19 R
2997 4460 0.030638 CCACCAAACACTCAAAGGCG 59.969 55.000 0.00 0.00 0.00 5.52 R
3345 4808 1.837051 AACAGTCCTCGCCACCAGA 60.837 57.895 0.00 0.00 0.00 3.86 R
4344 5807 2.483714 GGTCATGATGCCGTCACAGTAT 60.484 50.000 0.00 0.00 40.28 2.12 R
6214 8869 0.817634 TCAACCTGAAACTGCACGGG 60.818 55.000 0.00 0.00 38.40 5.28 R
7217 9904 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.898320 CGATCACCTGACTGGAGGTT 59.102 55.000 5.22 0.00 44.53 3.50
74 75 8.966868 TCTTGAATTTGTTTTTAGTTGTCCTCT 58.033 29.630 0.00 0.00 0.00 3.69
92 93 1.146358 CTAGCAAGCCTAACCGTCGC 61.146 60.000 0.00 0.00 0.00 5.19
108 109 0.173481 TCGCGAAGTCTGCTATTGCT 59.827 50.000 6.20 0.00 40.48 3.91
150 152 8.081025 GGTACTAAGGATCCAAATCTTAGTACG 58.919 40.741 30.85 11.21 44.88 3.67
214 216 1.270550 CGAGCAGCCAAAAAGTCCAAT 59.729 47.619 0.00 0.00 0.00 3.16
296 298 6.442244 ACTTTTCTCCATAACTCCTTAGCTCT 59.558 38.462 0.00 0.00 0.00 4.09
354 356 2.073117 ATTACACGCACGACACATGA 57.927 45.000 0.00 0.00 0.00 3.07
390 556 4.118093 TCCATGTGATACACGAAACGAT 57.882 40.909 0.00 0.00 37.14 3.73
391 557 5.251601 TCCATGTGATACACGAAACGATA 57.748 39.130 0.00 0.00 37.14 2.92
392 558 5.278604 TCCATGTGATACACGAAACGATAG 58.721 41.667 0.00 0.00 37.14 2.08
393 559 5.041287 CCATGTGATACACGAAACGATAGT 58.959 41.667 0.00 0.00 45.41 2.12
492 663 7.660617 ACAATCTATTGCACATCTATCTTCCAG 59.339 37.037 2.60 0.00 41.38 3.86
493 664 6.983906 TCTATTGCACATCTATCTTCCAGA 57.016 37.500 0.00 0.00 0.00 3.86
538 709 1.004745 CCTACTCATTGTGGTTGGGCT 59.995 52.381 0.00 0.00 0.00 5.19
561 732 7.254353 GGCTAATTAATTCACTGACCTTACGAC 60.254 40.741 3.39 0.00 0.00 4.34
613 784 5.475719 ACAAGATCAGTGCATTTTTCCATG 58.524 37.500 0.00 0.00 0.00 3.66
626 797 7.135089 CATTTTTCCATGCATCAATTTGTCA 57.865 32.000 0.00 0.00 0.00 3.58
697 868 6.260936 CCCTATCATTACACTTTGCCAAGTAG 59.739 42.308 2.38 1.33 41.69 2.57
807 978 2.840038 TGCTCCAAGATCAGCCTCTAAA 59.160 45.455 0.00 0.00 34.47 1.85
814 2200 4.445557 AGATCAGCCTCTAAATTTCCCC 57.554 45.455 0.00 0.00 0.00 4.81
1249 2709 0.106318 GCCGTCTACCTCCCCTTCTA 60.106 60.000 0.00 0.00 0.00 2.10
1273 2733 1.041447 GGGCGCTAGAAGGTAGGACA 61.041 60.000 7.64 0.00 0.00 4.02
1295 2755 1.032014 GAAGCTCATCGCCTCTCTCT 58.968 55.000 0.00 0.00 40.39 3.10
1297 2757 2.584835 AGCTCATCGCCTCTCTCTAT 57.415 50.000 0.00 0.00 40.39 1.98
1307 2767 7.290014 TCATCGCCTCTCTCTATATCTCTATCT 59.710 40.741 0.00 0.00 0.00 1.98
1401 2861 8.085296 GGATTTGGTACACATGTTGAATTTGTA 58.915 33.333 0.00 0.00 39.29 2.41
1498 2958 1.134818 CCGTAGCTTGCAGTATCCACA 60.135 52.381 0.00 0.00 0.00 4.17
1514 2974 3.325870 TCCACATACTATGCATAAGCGC 58.674 45.455 8.00 0.00 46.23 5.92
1724 3187 5.266242 GCATTATGTCCACGTCAGATTTTC 58.734 41.667 0.00 0.00 0.00 2.29
1794 3257 7.490657 TGCTTATAAGGTTGTCTTTCCTCTA 57.509 36.000 14.28 0.00 36.93 2.43
1814 3277 7.343574 TCCTCTATGTAGTTGGTTACTTATGCA 59.656 37.037 0.00 0.00 38.33 3.96
1834 3297 9.902196 TTATGCAGATGTATTCATGCAATTTAG 57.098 29.630 4.94 0.00 36.84 1.85
1999 3462 8.764524 ATTTATATGGTGCTAATTCGTCTCTC 57.235 34.615 0.00 0.00 0.00 3.20
2117 3580 3.570926 GACCGTGTGTCTCATTAGTCA 57.429 47.619 0.00 0.00 41.03 3.41
2118 3581 4.111375 GACCGTGTGTCTCATTAGTCAT 57.889 45.455 0.00 0.00 41.03 3.06
2237 3700 8.212995 TCTTTGATGATGCATGGAGTTCTTATA 58.787 33.333 2.46 0.00 0.00 0.98
2279 3742 6.569179 TCCTCTATTTTGGTTTTACACAGC 57.431 37.500 0.00 0.00 0.00 4.40
2409 3872 1.074566 CCAGGTTTCTTGCTCTCCCTT 59.925 52.381 0.00 0.00 0.00 3.95
2424 3887 1.214175 TCCCTTTCAAGTGAGTTGGCA 59.786 47.619 0.00 0.00 36.71 4.92
2868 4331 2.430546 ACTCTGAAGTGAGACTTGCG 57.569 50.000 0.00 0.00 38.80 4.85
2997 4460 2.769095 AGAGGTGAAGATAAGACAGGCC 59.231 50.000 0.00 0.00 0.00 5.19
3345 4808 1.752788 GCTGGTGGTACTTGTTTGGGT 60.753 52.381 0.00 0.00 0.00 4.51
3393 4856 1.541588 GTTGTTCCTCTTGTGATGCCC 59.458 52.381 0.00 0.00 0.00 5.36
3618 5081 3.149196 TGAGTTTCTTCATGGTTCTGCC 58.851 45.455 0.00 0.00 37.90 4.85
4338 5801 1.177401 GGGCACTGGAGGACAAAATC 58.823 55.000 0.00 0.00 0.00 2.17
4344 5807 4.651778 CACTGGAGGACAAAATCTTACCA 58.348 43.478 0.00 0.00 0.00 3.25
4774 6241 6.757897 ACATGAATATTTTCTGCTTTCCGA 57.242 33.333 0.00 0.00 32.78 4.55
4990 6463 8.768501 ATTCCCTCCTTCCAAAATATAAGTTC 57.231 34.615 0.00 0.00 0.00 3.01
5095 6569 8.140112 ACTTATATGCCTTGTATCTTAGGGAG 57.860 38.462 0.00 0.00 35.21 4.30
5185 6744 7.661040 ACTCAATTCCGAAACTTCATGAATTT 58.339 30.769 8.96 6.93 36.75 1.82
5192 6751 6.884295 TCCGAAACTTCATGAATTTCTACCAT 59.116 34.615 24.66 8.76 31.47 3.55
5231 6790 3.121944 GTGTGCTTCTGTTATCGTGTCAG 59.878 47.826 0.00 0.00 0.00 3.51
5295 6855 3.359002 CCTTGTCTGGCTTGGTGC 58.641 61.111 0.00 0.00 41.94 5.01
5312 6872 3.372554 GCTCCTGCACGGGTACCTC 62.373 68.421 12.72 0.75 43.18 3.85
5341 7866 7.338710 TGTAAGGCTGCTTCTCTGTAAAATAT 58.661 34.615 0.00 0.00 0.00 1.28
5343 7868 5.053145 AGGCTGCTTCTCTGTAAAATATCG 58.947 41.667 0.00 0.00 0.00 2.92
5506 8064 4.899352 AGGCATATGATGGAAGTAGGAC 57.101 45.455 6.97 0.00 0.00 3.85
5560 8138 6.069088 TCCCAAAATGAGGGTATACTTGACAT 60.069 38.462 2.25 1.95 46.82 3.06
5573 8175 8.765219 GGTATACTTGACATGTGTTATAGCTTG 58.235 37.037 1.15 0.00 0.00 4.01
5638 8248 4.184079 AGAGCTAAGCCTTGCAAATTTG 57.816 40.909 14.03 14.03 0.00 2.32
5639 8249 3.828451 AGAGCTAAGCCTTGCAAATTTGA 59.172 39.130 22.31 4.41 0.00 2.69
5640 8250 4.281688 AGAGCTAAGCCTTGCAAATTTGAA 59.718 37.500 22.31 8.84 0.00 2.69
5641 8251 4.959723 AGCTAAGCCTTGCAAATTTGAAA 58.040 34.783 22.31 16.63 0.00 2.69
5642 8252 5.554070 AGCTAAGCCTTGCAAATTTGAAAT 58.446 33.333 22.31 5.23 0.00 2.17
5643 8253 5.999600 AGCTAAGCCTTGCAAATTTGAAATT 59.000 32.000 22.31 11.26 0.00 1.82
5644 8254 6.487668 AGCTAAGCCTTGCAAATTTGAAATTT 59.512 30.769 22.31 9.92 0.00 1.82
5645 8255 6.798476 GCTAAGCCTTGCAAATTTGAAATTTC 59.202 34.615 22.31 11.41 0.00 2.17
5673 8283 6.599244 TGTTGGTGAACTTCTGATTATGATCC 59.401 38.462 0.00 0.00 32.79 3.36
5719 8343 8.208903 ACCAATAGGCGTTAGATACTAATTTGT 58.791 33.333 0.00 0.00 39.06 2.83
5741 8365 5.179368 TGTGATTTCTTACTGTGCACTAAGC 59.821 40.000 19.41 6.38 45.96 3.09
5790 8421 9.149225 GGAATGTATGTTGTTTGCATTTGAATA 57.851 29.630 0.00 0.00 30.96 1.75
5827 8458 2.158564 AGGGCCACATCCAGTAATGATG 60.159 50.000 6.18 0.00 44.13 3.07
5871 8502 5.570320 ACACCTTACACTATTGCCAGAATT 58.430 37.500 0.00 0.00 0.00 2.17
5975 8629 6.702972 TTGCAACAATTGACCAATATTTCG 57.297 33.333 13.59 0.00 0.00 3.46
5984 8638 3.270877 GACCAATATTTCGGCTCAGTGT 58.729 45.455 0.00 0.00 0.00 3.55
5995 8650 2.414824 CGGCTCAGTGTGACTCTAGTTC 60.415 54.545 0.00 0.00 0.00 3.01
6001 8656 2.959030 AGTGTGACTCTAGTTCAGCACA 59.041 45.455 19.20 12.87 34.28 4.57
6286 8941 0.894184 ATCCACGTGTCGAGTCTGGT 60.894 55.000 15.65 0.00 0.00 4.00
6295 8950 1.808945 GTCGAGTCTGGTTCTTCGGTA 59.191 52.381 0.00 0.00 0.00 4.02
6871 9552 3.612251 GCAAGACCCTGCATGCAT 58.388 55.556 22.97 6.38 42.17 3.96
6872 9553 1.141019 GCAAGACCCTGCATGCATG 59.859 57.895 22.97 22.70 42.17 4.06
6948 9631 3.005050 TGCTGCTCCATTTCAGTTTTCAG 59.995 43.478 0.00 0.00 33.09 3.02
6961 9644 2.092968 AGTTTTCAGTGAGGCTGTGTGA 60.093 45.455 0.00 0.00 45.23 3.58
6962 9645 1.953559 TTTCAGTGAGGCTGTGTGAC 58.046 50.000 0.00 0.00 45.23 3.67
6963 9646 1.123077 TTCAGTGAGGCTGTGTGACT 58.877 50.000 0.00 0.00 45.23 3.41
6977 9663 3.689161 TGTGTGACTGGTTGAACAAGAAG 59.311 43.478 6.74 0.00 0.00 2.85
7014 9700 2.370519 GGTGGTTTTATTTTGGGGCAGT 59.629 45.455 0.00 0.00 0.00 4.40
7074 9761 4.069232 TGGAACTCTGCCGCCTCG 62.069 66.667 0.00 0.00 0.00 4.63
7091 9778 3.700154 CCTCGTATCTCATGTGTCAGTG 58.300 50.000 0.00 0.00 0.00 3.66
7142 9829 1.066430 TGAACGGGTTCAGTGATAGGC 60.066 52.381 10.04 0.00 43.90 3.93
7143 9830 0.981183 AACGGGTTCAGTGATAGGCA 59.019 50.000 0.00 0.00 0.00 4.75
7144 9831 0.981183 ACGGGTTCAGTGATAGGCAA 59.019 50.000 0.00 0.00 0.00 4.52
7145 9832 1.349688 ACGGGTTCAGTGATAGGCAAA 59.650 47.619 0.00 0.00 0.00 3.68
7146 9833 2.026262 ACGGGTTCAGTGATAGGCAAAT 60.026 45.455 0.00 0.00 0.00 2.32
7147 9834 3.016736 CGGGTTCAGTGATAGGCAAATT 58.983 45.455 0.00 0.00 0.00 1.82
7148 9835 3.443681 CGGGTTCAGTGATAGGCAAATTT 59.556 43.478 0.00 0.00 0.00 1.82
7149 9836 4.675146 CGGGTTCAGTGATAGGCAAATTTG 60.675 45.833 14.03 14.03 0.00 2.32
7150 9837 4.462483 GGGTTCAGTGATAGGCAAATTTGA 59.538 41.667 22.31 1.15 0.00 2.69
7151 9838 5.402398 GGTTCAGTGATAGGCAAATTTGAC 58.598 41.667 22.31 19.61 36.08 3.18
7152 9839 5.048083 GGTTCAGTGATAGGCAAATTTGACA 60.048 40.000 25.59 12.12 39.18 3.58
7153 9840 6.446318 GTTCAGTGATAGGCAAATTTGACAA 58.554 36.000 25.59 5.96 39.18 3.18
7154 9841 6.647334 TCAGTGATAGGCAAATTTGACAAA 57.353 33.333 25.59 13.64 39.18 2.83
7155 9842 7.230849 TCAGTGATAGGCAAATTTGACAAAT 57.769 32.000 25.59 17.65 39.18 2.32
7156 9843 7.669427 TCAGTGATAGGCAAATTTGACAAATT 58.331 30.769 25.59 18.41 42.62 1.82
7168 9855 7.538303 AATTTGACAAATTTGACTTGTGGAC 57.462 32.000 24.64 5.11 37.84 4.02
7169 9856 4.285807 TGACAAATTTGACTTGTGGACG 57.714 40.909 24.64 0.00 37.14 4.79
7170 9857 3.942115 TGACAAATTTGACTTGTGGACGA 59.058 39.130 24.64 0.00 37.14 4.20
7171 9858 4.396478 TGACAAATTTGACTTGTGGACGAA 59.604 37.500 24.64 0.00 37.14 3.85
7172 9859 5.106118 TGACAAATTTGACTTGTGGACGAAA 60.106 36.000 24.64 0.00 37.14 3.46
7173 9860 5.901552 ACAAATTTGACTTGTGGACGAAAT 58.098 33.333 24.64 0.00 35.70 2.17
7174 9861 5.977129 ACAAATTTGACTTGTGGACGAAATC 59.023 36.000 24.64 0.00 35.70 2.17
7175 9862 5.766150 AATTTGACTTGTGGACGAAATCA 57.234 34.783 0.00 0.00 0.00 2.57
7176 9863 5.766150 ATTTGACTTGTGGACGAAATCAA 57.234 34.783 0.00 0.00 0.00 2.57
7177 9864 5.568685 TTTGACTTGTGGACGAAATCAAA 57.431 34.783 0.00 0.00 33.45 2.69
7178 9865 5.766150 TTGACTTGTGGACGAAATCAAAT 57.234 34.783 0.00 0.00 0.00 2.32
7179 9866 5.766150 TGACTTGTGGACGAAATCAAATT 57.234 34.783 0.00 0.00 0.00 1.82
7180 9867 6.869315 TGACTTGTGGACGAAATCAAATTA 57.131 33.333 0.00 0.00 0.00 1.40
7181 9868 6.664515 TGACTTGTGGACGAAATCAAATTAC 58.335 36.000 0.00 0.00 0.00 1.89
7182 9869 6.261158 TGACTTGTGGACGAAATCAAATTACA 59.739 34.615 0.00 0.00 0.00 2.41
7183 9870 6.668323 ACTTGTGGACGAAATCAAATTACAG 58.332 36.000 0.00 0.00 0.00 2.74
7184 9871 6.485313 ACTTGTGGACGAAATCAAATTACAGA 59.515 34.615 0.00 0.00 0.00 3.41
7185 9872 6.869315 TGTGGACGAAATCAAATTACAGAA 57.131 33.333 0.00 0.00 0.00 3.02
7186 9873 7.447374 TGTGGACGAAATCAAATTACAGAAT 57.553 32.000 0.00 0.00 0.00 2.40
7187 9874 7.304735 TGTGGACGAAATCAAATTACAGAATG 58.695 34.615 0.00 0.00 46.00 2.67
7188 9875 7.174080 TGTGGACGAAATCAAATTACAGAATGA 59.826 33.333 0.00 0.00 39.69 2.57
7189 9876 8.020819 GTGGACGAAATCAAATTACAGAATGAA 58.979 33.333 0.00 0.00 39.69 2.57
7190 9877 8.020819 TGGACGAAATCAAATTACAGAATGAAC 58.979 33.333 0.00 0.00 39.69 3.18
7191 9878 8.237267 GGACGAAATCAAATTACAGAATGAACT 58.763 33.333 0.00 0.00 39.69 3.01
7192 9879 8.955061 ACGAAATCAAATTACAGAATGAACTG 57.045 30.769 0.00 0.00 39.69 3.16
7193 9880 7.538678 ACGAAATCAAATTACAGAATGAACTGC 59.461 33.333 0.00 0.00 39.69 4.40
7194 9881 7.008628 CGAAATCAAATTACAGAATGAACTGCC 59.991 37.037 0.00 0.00 39.69 4.85
7195 9882 5.643379 TCAAATTACAGAATGAACTGCCC 57.357 39.130 0.00 0.00 39.69 5.36
7196 9883 4.155826 TCAAATTACAGAATGAACTGCCCG 59.844 41.667 0.00 0.00 39.69 6.13
7197 9884 2.851263 TTACAGAATGAACTGCCCGT 57.149 45.000 0.00 0.00 39.69 5.28
7198 9885 2.093306 TACAGAATGAACTGCCCGTG 57.907 50.000 0.00 0.00 39.69 4.94
7199 9886 0.396435 ACAGAATGAACTGCCCGTGA 59.604 50.000 0.00 0.00 39.69 4.35
7200 9887 1.202758 ACAGAATGAACTGCCCGTGAA 60.203 47.619 0.00 0.00 39.69 3.18
7201 9888 1.879380 CAGAATGAACTGCCCGTGAAA 59.121 47.619 0.00 0.00 39.69 2.69
7202 9889 1.880027 AGAATGAACTGCCCGTGAAAC 59.120 47.619 0.00 0.00 0.00 2.78
7203 9890 1.880027 GAATGAACTGCCCGTGAAACT 59.120 47.619 0.00 0.00 31.75 2.66
7204 9891 2.851263 ATGAACTGCCCGTGAAACTA 57.149 45.000 0.00 0.00 31.75 2.24
7205 9892 2.851263 TGAACTGCCCGTGAAACTAT 57.149 45.000 0.00 0.00 31.75 2.12
7206 9893 3.134574 TGAACTGCCCGTGAAACTATT 57.865 42.857 0.00 0.00 31.75 1.73
7207 9894 3.482436 TGAACTGCCCGTGAAACTATTT 58.518 40.909 0.00 0.00 31.75 1.40
7208 9895 3.500680 TGAACTGCCCGTGAAACTATTTC 59.499 43.478 0.00 0.00 40.08 2.17
7209 9896 3.134574 ACTGCCCGTGAAACTATTTCA 57.865 42.857 0.00 0.00 46.68 2.69
7219 9906 5.917541 TGAAACTATTTCACGAGGTTGAC 57.082 39.130 0.00 0.00 44.21 3.18
7220 9907 4.753107 TGAAACTATTTCACGAGGTTGACC 59.247 41.667 0.00 0.00 44.21 4.02
7221 9908 4.995487 GAAACTATTTCACGAGGTTGACCT 59.005 41.667 1.47 1.47 43.41 3.85
7222 9909 5.469084 GAAACTATTTCACGAGGTTGACCTT 59.531 40.000 3.83 0.00 42.02 3.50
7223 9910 6.017357 GAAACTATTTCACGAGGTTGACCTTT 60.017 38.462 3.83 0.00 42.02 3.11
7224 9911 7.468220 GAAACTATTTCACGAGGTTGACCTTTT 60.468 37.037 3.83 0.00 42.02 2.27
7233 9920 2.422127 AGGTTGACCTTTTTGTGTGACG 59.578 45.455 0.00 0.00 46.09 4.35
7234 9921 2.182014 GTTGACCTTTTTGTGTGACGC 58.818 47.619 0.00 0.00 0.00 5.19
7235 9922 0.736053 TGACCTTTTTGTGTGACGCC 59.264 50.000 0.00 0.00 0.00 5.68
7236 9923 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.000 0.00 0.00 0.00 6.13
7237 9924 1.008995 CCTTTTTGTGTGACGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
7238 9925 1.440938 CCTTTTTGTGTGACGCCCGA 61.441 55.000 0.00 0.00 0.00 5.14
7239 9926 0.316689 CTTTTTGTGTGACGCCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
7240 9927 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
7241 9928 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
7244 9931 2.187163 TGTGACGCCCGACACAAA 59.813 55.556 19.92 2.16 44.68 2.83
7245 9932 1.885388 TGTGACGCCCGACACAAAG 60.885 57.895 19.92 0.00 44.68 2.77
7246 9933 2.280524 TGACGCCCGACACAAAGG 60.281 61.111 0.00 0.00 0.00 3.11
7247 9934 2.280592 GACGCCCGACACAAAGGT 60.281 61.111 0.00 0.00 0.00 3.50
7261 9948 4.985413 CACAAAGGTGCCACACTATATTG 58.015 43.478 0.00 0.00 38.37 1.90
7262 9949 4.458989 CACAAAGGTGCCACACTATATTGT 59.541 41.667 0.00 0.00 38.37 2.71
7263 9950 4.458989 ACAAAGGTGCCACACTATATTGTG 59.541 41.667 14.59 14.59 45.57 3.33
7264 9951 2.643551 AGGTGCCACACTATATTGTGC 58.356 47.619 15.79 12.13 44.79 4.57
7265 9952 2.026356 AGGTGCCACACTATATTGTGCA 60.026 45.455 15.79 14.09 44.79 4.57
7266 9953 2.752354 GGTGCCACACTATATTGTGCAA 59.248 45.455 15.79 5.18 44.79 4.08
7267 9954 3.427503 GGTGCCACACTATATTGTGCAAC 60.428 47.826 15.79 15.24 44.79 4.17
7268 9955 2.418280 TGCCACACTATATTGTGCAACG 59.582 45.455 15.79 5.54 44.79 4.10
7269 9956 2.791158 GCCACACTATATTGTGCAACGC 60.791 50.000 15.79 10.78 44.79 4.84
7270 9957 2.223249 CCACACTATATTGTGCAACGCC 60.223 50.000 15.79 0.00 44.79 5.68
7271 9958 2.677836 CACACTATATTGTGCAACGCCT 59.322 45.455 15.90 0.00 42.39 5.52
7272 9959 2.936498 ACACTATATTGTGCAACGCCTC 59.064 45.455 15.90 0.00 42.39 4.70
7273 9960 2.935849 CACTATATTGTGCAACGCCTCA 59.064 45.455 4.35 0.00 42.39 3.86
7274 9961 2.936498 ACTATATTGTGCAACGCCTCAC 59.064 45.455 0.00 0.00 42.39 3.51
7275 9962 1.819928 ATATTGTGCAACGCCTCACA 58.180 45.000 0.00 0.86 42.39 3.58
7276 9963 1.155889 TATTGTGCAACGCCTCACAG 58.844 50.000 0.00 0.00 43.15 3.66
7277 9964 0.534877 ATTGTGCAACGCCTCACAGA 60.535 50.000 0.00 0.00 43.15 3.41
7278 9965 0.534877 TTGTGCAACGCCTCACAGAT 60.535 50.000 0.00 0.00 43.15 2.90
7279 9966 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
7280 9967 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
7281 9968 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
7287 9974 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
7288 9975 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
7289 9976 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
7299 9986 4.925576 CGCTACACGCCTAGCCCG 62.926 72.222 6.41 0.22 36.53 6.13
7315 10002 4.988598 CGCGTTGCACCCCAGACT 62.989 66.667 0.00 0.00 0.00 3.24
7316 10003 3.357079 GCGTTGCACCCCAGACTG 61.357 66.667 0.00 0.00 0.00 3.51
7317 10004 3.357079 CGTTGCACCCCAGACTGC 61.357 66.667 0.00 0.00 0.00 4.40
7318 10005 2.985847 GTTGCACCCCAGACTGCC 60.986 66.667 0.00 0.00 31.97 4.85
7319 10006 3.177884 TTGCACCCCAGACTGCCT 61.178 61.111 0.00 0.00 31.97 4.75
7320 10007 1.845664 TTGCACCCCAGACTGCCTA 60.846 57.895 0.00 0.00 31.97 3.93
7321 10008 1.422977 TTGCACCCCAGACTGCCTAA 61.423 55.000 0.00 0.00 31.97 2.69
7322 10009 1.378762 GCACCCCAGACTGCCTAAA 59.621 57.895 0.00 0.00 0.00 1.85
7323 10010 0.251165 GCACCCCAGACTGCCTAAAA 60.251 55.000 0.00 0.00 0.00 1.52
7324 10011 1.821666 GCACCCCAGACTGCCTAAAAA 60.822 52.381 0.00 0.00 0.00 1.94
7325 10012 2.807676 CACCCCAGACTGCCTAAAAAT 58.192 47.619 0.00 0.00 0.00 1.82
7326 10013 3.165071 CACCCCAGACTGCCTAAAAATT 58.835 45.455 0.00 0.00 0.00 1.82
7327 10014 3.056607 CACCCCAGACTGCCTAAAAATTG 60.057 47.826 0.00 0.00 0.00 2.32
7328 10015 2.094026 CCCCAGACTGCCTAAAAATTGC 60.094 50.000 0.00 0.00 0.00 3.56
7329 10016 2.827921 CCCAGACTGCCTAAAAATTGCT 59.172 45.455 0.00 0.00 0.00 3.91
7330 10017 4.016444 CCCAGACTGCCTAAAAATTGCTA 58.984 43.478 0.00 0.00 0.00 3.49
7331 10018 4.462483 CCCAGACTGCCTAAAAATTGCTAA 59.538 41.667 0.00 0.00 0.00 3.09
7332 10019 5.393461 CCCAGACTGCCTAAAAATTGCTAAG 60.393 44.000 0.00 0.00 0.00 2.18
7333 10020 5.183904 CCAGACTGCCTAAAAATTGCTAAGT 59.816 40.000 0.00 0.00 0.00 2.24
7334 10021 6.317857 CAGACTGCCTAAAAATTGCTAAGTC 58.682 40.000 0.00 0.00 31.68 3.01
7335 10022 6.003950 AGACTGCCTAAAAATTGCTAAGTCA 58.996 36.000 0.00 0.00 33.10 3.41
7336 10023 6.660949 AGACTGCCTAAAAATTGCTAAGTCAT 59.339 34.615 0.00 0.00 33.10 3.06
7337 10024 7.177392 AGACTGCCTAAAAATTGCTAAGTCATT 59.823 33.333 0.00 0.00 33.10 2.57
7338 10025 7.092716 ACTGCCTAAAAATTGCTAAGTCATTG 58.907 34.615 0.00 0.00 0.00 2.82
7339 10026 6.991938 TGCCTAAAAATTGCTAAGTCATTGT 58.008 32.000 0.00 0.00 0.00 2.71
7340 10027 6.867816 TGCCTAAAAATTGCTAAGTCATTGTG 59.132 34.615 0.00 0.00 0.00 3.33
7341 10028 6.311200 GCCTAAAAATTGCTAAGTCATTGTGG 59.689 38.462 0.00 0.00 0.00 4.17
7342 10029 7.601856 CCTAAAAATTGCTAAGTCATTGTGGA 58.398 34.615 0.00 0.00 0.00 4.02
7343 10030 7.756722 CCTAAAAATTGCTAAGTCATTGTGGAG 59.243 37.037 0.00 0.00 0.00 3.86
7344 10031 4.708726 AATTGCTAAGTCATTGTGGAGC 57.291 40.909 0.00 0.00 0.00 4.70
7345 10032 1.725641 TGCTAAGTCATTGTGGAGCG 58.274 50.000 0.00 0.00 32.53 5.03
7346 10033 0.375106 GCTAAGTCATTGTGGAGCGC 59.625 55.000 0.00 0.00 0.00 5.92
7347 10034 1.009829 CTAAGTCATTGTGGAGCGCC 58.990 55.000 2.29 0.00 0.00 6.53
7348 10035 0.613260 TAAGTCATTGTGGAGCGCCT 59.387 50.000 8.34 0.00 34.31 5.52
7349 10036 0.613260 AAGTCATTGTGGAGCGCCTA 59.387 50.000 8.34 0.00 34.31 3.93
7350 10037 0.613260 AGTCATTGTGGAGCGCCTAA 59.387 50.000 8.34 3.54 34.31 2.69
7351 10038 1.009829 GTCATTGTGGAGCGCCTAAG 58.990 55.000 8.34 0.00 34.31 2.18
7352 10039 0.901827 TCATTGTGGAGCGCCTAAGA 59.098 50.000 8.34 0.00 34.31 2.10
7353 10040 1.134699 TCATTGTGGAGCGCCTAAGAG 60.135 52.381 8.34 1.23 34.31 2.85
7354 10041 0.462759 ATTGTGGAGCGCCTAAGAGC 60.463 55.000 8.34 0.00 39.42 4.09
7370 10057 2.184322 GCTAGGCGCTGCACTGTA 59.816 61.111 7.64 0.00 35.14 2.74
7371 10058 1.227380 GCTAGGCGCTGCACTGTAT 60.227 57.895 7.64 0.00 35.14 2.29
7372 10059 0.032130 GCTAGGCGCTGCACTGTATA 59.968 55.000 7.64 0.00 35.14 1.47
7373 10060 1.932604 GCTAGGCGCTGCACTGTATAG 60.933 57.143 7.64 0.00 35.14 1.31
7374 10061 1.338337 CTAGGCGCTGCACTGTATAGT 59.662 52.381 7.64 0.00 37.75 2.12
7383 10070 2.591915 ACTGTATAGTGTGGCGCCT 58.408 52.632 29.70 9.99 35.34 5.52
7384 10071 1.771565 ACTGTATAGTGTGGCGCCTA 58.228 50.000 29.70 14.39 35.34 3.93
7385 10072 1.681793 ACTGTATAGTGTGGCGCCTAG 59.318 52.381 29.70 13.13 35.34 3.02
7386 10073 4.165507 ACTGTATAGTGTGGCGCCTAGC 62.166 54.545 29.70 17.93 39.66 3.42
7398 10085 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.942976 ACCAGATTACCAAGATACGAAGAAA 58.057 36.000 0.00 0.00 0.00 2.52
74 75 1.153706 GCGACGGTTAGGCTTGCTA 60.154 57.895 0.00 0.00 0.00 3.49
92 93 2.475187 GCACAAGCAATAGCAGACTTCG 60.475 50.000 0.00 0.00 45.49 3.79
108 109 6.097839 CCTTAGTACCCTAGACTTATGCACAA 59.902 42.308 0.00 0.00 0.00 3.33
122 124 7.140304 ACTAAGATTTGGATCCTTAGTACCCT 58.860 38.462 17.46 1.80 36.09 4.34
150 152 2.462889 CACCAATTGCATATTGTCGGC 58.537 47.619 15.67 0.00 0.00 5.54
214 216 3.377253 AGATAGACCGGGAGTGTTGTA 57.623 47.619 6.32 0.00 0.00 2.41
296 298 4.570772 GCACACGCTATTCCTTTTATGAGA 59.429 41.667 0.00 0.00 34.30 3.27
354 356 9.383519 GTATCACATGGATATCGGAAACAATAT 57.616 33.333 0.00 0.00 40.49 1.28
399 565 7.942894 GCCTGGAGGGTAACTAAATATTGTATT 59.057 37.037 0.00 0.00 37.43 1.89
435 604 2.586635 AGTCAAAACGGCGCGACA 60.587 55.556 14.85 0.00 0.00 4.35
538 709 8.525316 TGAGTCGTAAGGTCAGTGAATTAATTA 58.475 33.333 0.00 0.00 38.47 1.40
584 755 7.653311 GGAAAAATGCACTGATCTTGTTAGTTT 59.347 33.333 0.00 0.00 0.00 2.66
605 776 5.875910 GGATGACAAATTGATGCATGGAAAA 59.124 36.000 2.46 0.00 0.00 2.29
613 784 4.261909 GGGAGATGGATGACAAATTGATGC 60.262 45.833 0.00 0.00 0.00 3.91
626 797 1.145945 TCTAGCGAGTGGGAGATGGAT 59.854 52.381 0.00 0.00 0.00 3.41
697 868 1.727335 GCTAAGACTTGGCTCGTCAAC 59.273 52.381 15.68 0.00 33.94 3.18
740 911 7.871853 TGTTGAGGAGTATAAAAACTTTCTGC 58.128 34.615 0.00 0.00 0.00 4.26
807 978 4.475919 AATAAGGCTATGCTGGGGAAAT 57.524 40.909 0.00 0.00 0.00 2.17
814 2200 8.139989 AGAATTGCTTTTAATAAGGCTATGCTG 58.860 33.333 0.00 0.00 36.56 4.41
1234 2694 4.810584 CCTACTTAGAAGGGGAGGTAGA 57.189 50.000 0.00 0.00 31.36 2.59
1249 2709 2.308690 CTACCTTCTAGCGCCCTACTT 58.691 52.381 2.29 0.00 0.00 2.24
1297 2757 8.681806 CAGAAGAACAGAACACAGATAGAGATA 58.318 37.037 0.00 0.00 0.00 1.98
1307 2767 3.616821 CGACAACAGAAGAACAGAACACA 59.383 43.478 0.00 0.00 0.00 3.72
1401 2861 3.369576 GCTCTCAACCGAATCTAGGGTTT 60.370 47.826 0.00 0.00 43.84 3.27
1474 2934 0.527817 ATACTGCAAGCTACGGCGAC 60.528 55.000 16.62 1.94 44.37 5.19
1498 2958 5.644977 TGTAGAGCGCTTATGCATAGTAT 57.355 39.130 13.26 0.00 39.64 2.12
1514 2974 5.986135 GCCATTTACTCCTGTGTATGTAGAG 59.014 44.000 0.00 0.00 0.00 2.43
1561 3022 2.248248 CACCAGTTCCCTGAGAGTACA 58.752 52.381 0.00 0.00 41.50 2.90
1630 3091 6.454795 GAGCAACCTCATTTTAAATGGAACA 58.545 36.000 16.42 0.00 39.73 3.18
1724 3187 7.121168 TCAATCCCAAAATCTAAACAGCTGTAG 59.879 37.037 22.01 15.22 0.00 2.74
1794 3257 7.338710 ACATCTGCATAAGTAACCAACTACAT 58.661 34.615 0.00 0.00 37.50 2.29
1906 3369 9.654663 AAGAAACTATCAACTACAATGAGGTAC 57.345 33.333 0.00 0.00 0.00 3.34
1938 3401 7.149080 CGAGCAAACAGAAGATTAAACAACATG 60.149 37.037 0.00 0.00 0.00 3.21
1999 3462 7.546358 TGGCATCATAATTTACAGGTGAAAAG 58.454 34.615 0.00 0.00 0.00 2.27
2135 3598 7.036220 TGTGTAAAACCAAACAATACACCAAG 58.964 34.615 10.74 0.00 43.45 3.61
2138 3601 7.829378 TTTGTGTAAAACCAAACAATACACC 57.171 32.000 10.74 0.00 43.45 4.16
2319 3782 2.421107 AATCGAGCCATCAGCAGATTGT 60.421 45.455 7.33 0.00 44.26 2.71
2409 3872 4.576873 TCGTTATTTGCCAACTCACTTGAA 59.423 37.500 0.00 0.00 30.42 2.69
2424 3887 5.639931 GCTCTCTTCAGGTTTCTCGTTATTT 59.360 40.000 0.00 0.00 0.00 1.40
2997 4460 0.030638 CCACCAAACACTCAAAGGCG 59.969 55.000 0.00 0.00 0.00 5.52
3345 4808 1.837051 AACAGTCCTCGCCACCAGA 60.837 57.895 0.00 0.00 0.00 3.86
3393 4856 6.539649 TTCGTTATGTTCTCCTCAACAAAG 57.460 37.500 0.00 0.00 39.69 2.77
3618 5081 5.705441 TGTAATAACAGGAGCAGTTTCAAGG 59.295 40.000 0.00 0.00 0.00 3.61
4338 5801 2.665649 TGCCGTCACAGTATGGTAAG 57.334 50.000 0.00 0.00 43.62 2.34
4344 5807 2.483714 GGTCATGATGCCGTCACAGTAT 60.484 50.000 0.00 0.00 40.28 2.12
4763 6230 2.183478 TTGAGCATTCGGAAAGCAGA 57.817 45.000 18.76 3.21 0.00 4.26
4774 6241 2.298163 CCAGTTTCCAGCTTTGAGCATT 59.702 45.455 2.47 0.00 45.56 3.56
4917 6390 8.362464 TCCAGAAACTAGCTTGATTAGAGTTA 57.638 34.615 1.04 0.00 30.34 2.24
4919 6392 6.859112 TCCAGAAACTAGCTTGATTAGAGT 57.141 37.500 1.04 0.00 0.00 3.24
4920 6393 7.969314 GTTTCCAGAAACTAGCTTGATTAGAG 58.031 38.462 14.55 0.00 45.26 2.43
4921 6394 7.907214 GTTTCCAGAAACTAGCTTGATTAGA 57.093 36.000 14.55 0.00 45.26 2.10
5055 6529 9.866655 AGGCATATAAGTTTCATCCTAATTCAA 57.133 29.630 0.00 0.00 0.00 2.69
5056 6530 9.866655 AAGGCATATAAGTTTCATCCTAATTCA 57.133 29.630 0.00 0.00 0.00 2.57
5058 6532 9.646522 ACAAGGCATATAAGTTTCATCCTAATT 57.353 29.630 0.00 0.00 0.00 1.40
5061 6535 9.944376 GATACAAGGCATATAAGTTTCATCCTA 57.056 33.333 0.00 0.00 0.00 2.94
5062 6536 8.664079 AGATACAAGGCATATAAGTTTCATCCT 58.336 33.333 0.00 0.00 0.00 3.24
5063 6537 8.854614 AGATACAAGGCATATAAGTTTCATCC 57.145 34.615 0.00 0.00 0.00 3.51
5066 6540 9.778741 CCTAAGATACAAGGCATATAAGTTTCA 57.221 33.333 0.00 0.00 0.00 2.69
5067 6541 9.220767 CCCTAAGATACAAGGCATATAAGTTTC 57.779 37.037 0.00 0.00 0.00 2.78
5068 6542 8.945193 TCCCTAAGATACAAGGCATATAAGTTT 58.055 33.333 0.00 0.00 0.00 2.66
5069 6543 8.506196 TCCCTAAGATACAAGGCATATAAGTT 57.494 34.615 0.00 0.00 0.00 2.66
5070 6544 7.181125 CCTCCCTAAGATACAAGGCATATAAGT 59.819 40.741 0.00 0.00 0.00 2.24
5071 6545 7.365117 CCCTCCCTAAGATACAAGGCATATAAG 60.365 44.444 0.00 0.00 0.00 1.73
5072 6546 6.443849 CCCTCCCTAAGATACAAGGCATATAA 59.556 42.308 0.00 0.00 0.00 0.98
5073 6547 5.964477 CCCTCCCTAAGATACAAGGCATATA 59.036 44.000 0.00 0.00 0.00 0.86
5074 6548 4.785376 CCCTCCCTAAGATACAAGGCATAT 59.215 45.833 0.00 0.00 0.00 1.78
5075 6549 4.140543 TCCCTCCCTAAGATACAAGGCATA 60.141 45.833 0.00 0.00 0.00 3.14
5076 6550 2.982488 CCCTCCCTAAGATACAAGGCAT 59.018 50.000 0.00 0.00 0.00 4.40
5077 6551 2.022428 TCCCTCCCTAAGATACAAGGCA 60.022 50.000 0.00 0.00 0.00 4.75
5078 6552 2.635427 CTCCCTCCCTAAGATACAAGGC 59.365 54.545 0.00 0.00 0.00 4.35
5079 6553 3.930035 ACTCCCTCCCTAAGATACAAGG 58.070 50.000 0.00 0.00 0.00 3.61
5080 6554 5.536916 CAGTACTCCCTCCCTAAGATACAAG 59.463 48.000 0.00 0.00 0.00 3.16
5083 6557 5.321934 TCAGTACTCCCTCCCTAAGATAC 57.678 47.826 0.00 0.00 0.00 2.24
5095 6569 8.718734 CAAAACTTGTAGTTATTCAGTACTCCC 58.281 37.037 0.00 0.00 37.47 4.30
5185 6744 3.384168 ACAGCCCACTAATGATGGTAGA 58.616 45.455 0.00 0.00 35.23 2.59
5192 6751 1.423541 ACACCAACAGCCCACTAATGA 59.576 47.619 0.00 0.00 0.00 2.57
5231 6790 4.462834 AGTTAGGCAATTAAGTGAAAGGGC 59.537 41.667 7.18 0.00 0.00 5.19
5262 6822 3.947196 GACAAGGCATATCCATGTTGACA 59.053 43.478 0.00 0.00 45.94 3.58
5295 6855 2.722201 GGAGGTACCCGTGCAGGAG 61.722 68.421 8.74 0.00 45.00 3.69
5312 6872 2.681848 CAGAGAAGCAGCCTTACATTGG 59.318 50.000 0.00 0.00 0.00 3.16
5407 7933 3.955650 TGGCTAGGTGTTAGTGAGTTC 57.044 47.619 0.00 0.00 0.00 3.01
5586 8188 5.841957 AAATCACCTCAAATGTATCCAGC 57.158 39.130 0.00 0.00 0.00 4.85
5638 8248 6.473455 CAGAAGTTCACCAACACAGAAATTTC 59.527 38.462 10.33 10.33 34.60 2.17
5639 8249 6.152661 TCAGAAGTTCACCAACACAGAAATTT 59.847 34.615 5.50 0.00 34.60 1.82
5640 8250 5.652014 TCAGAAGTTCACCAACACAGAAATT 59.348 36.000 5.50 0.00 34.60 1.82
5641 8251 5.192927 TCAGAAGTTCACCAACACAGAAAT 58.807 37.500 5.50 0.00 34.60 2.17
5642 8252 4.584874 TCAGAAGTTCACCAACACAGAAA 58.415 39.130 5.50 0.00 34.60 2.52
5643 8253 4.214986 TCAGAAGTTCACCAACACAGAA 57.785 40.909 5.50 0.00 34.60 3.02
5644 8254 3.904800 TCAGAAGTTCACCAACACAGA 57.095 42.857 5.50 0.00 34.60 3.41
5645 8255 6.427853 TCATAATCAGAAGTTCACCAACACAG 59.572 38.462 5.50 0.00 34.60 3.66
5673 8283 6.358118 TGGTAAATGCAATCTAAAGTAGCG 57.642 37.500 0.00 0.00 0.00 4.26
5719 8343 5.551233 AGCTTAGTGCACAGTAAGAAATCA 58.449 37.500 23.13 0.00 43.60 2.57
5741 8365 6.039270 TCCATAGAACAACAAAAGTGACCAAG 59.961 38.462 0.00 0.00 0.00 3.61
5790 8421 2.358195 GGCCCTTTCCATCATAGTGGTT 60.358 50.000 0.00 0.00 40.27 3.67
5791 8422 1.215423 GGCCCTTTCCATCATAGTGGT 59.785 52.381 0.00 0.00 40.27 4.16
5847 8478 4.202245 TCTGGCAATAGTGTAAGGTGTC 57.798 45.455 0.00 0.00 0.00 3.67
5871 8502 2.127708 GGCTTAAGGGGGAGAGATTCA 58.872 52.381 4.29 0.00 0.00 2.57
5975 8629 2.558795 TGAACTAGAGTCACACTGAGCC 59.441 50.000 0.00 0.00 0.00 4.70
5984 8638 8.621532 AAAATTATTGTGCTGAACTAGAGTCA 57.378 30.769 0.00 0.00 0.00 3.41
6025 8680 3.128242 CACAGAATCATCCCTGAAACAGC 59.872 47.826 0.00 0.00 34.37 4.40
6098 8753 0.994247 TGATCAAGGGACCAGCATGT 59.006 50.000 0.00 0.00 0.00 3.21
6214 8869 0.817634 TCAACCTGAAACTGCACGGG 60.818 55.000 0.00 0.00 38.40 5.28
6286 8941 4.913335 AAGATACGATGCTACCGAAGAA 57.087 40.909 0.00 0.00 0.00 2.52
6295 8950 2.505819 ACTTCCCCAAAGATACGATGCT 59.494 45.455 0.00 0.00 38.44 3.79
6512 9186 2.911509 ATGCAAGCCACGCCAACA 60.912 55.556 0.00 0.00 0.00 3.33
6870 9551 2.014128 CCTGGAAATAAACCGACGCAT 58.986 47.619 0.00 0.00 0.00 4.73
6871 9552 1.270947 ACCTGGAAATAAACCGACGCA 60.271 47.619 0.00 0.00 0.00 5.24
6872 9553 1.129811 CACCTGGAAATAAACCGACGC 59.870 52.381 0.00 0.00 0.00 5.19
6873 9554 2.419667 ACACCTGGAAATAAACCGACG 58.580 47.619 0.00 0.00 0.00 5.12
6914 9595 0.463295 GAGCAGCAGCAAGGATAGCA 60.463 55.000 3.17 0.00 45.49 3.49
6915 9596 1.165284 GGAGCAGCAGCAAGGATAGC 61.165 60.000 3.17 0.00 45.49 2.97
6916 9597 0.179702 TGGAGCAGCAGCAAGGATAG 59.820 55.000 3.17 0.00 45.49 2.08
6948 9631 0.179045 AACCAGTCACACAGCCTCAC 60.179 55.000 0.00 0.00 0.00 3.51
6961 9644 3.950397 TGACACTTCTTGTTCAACCAGT 58.050 40.909 0.00 0.00 39.17 4.00
6962 9645 5.276270 CAATGACACTTCTTGTTCAACCAG 58.724 41.667 0.00 0.00 39.17 4.00
6963 9646 4.097741 CCAATGACACTTCTTGTTCAACCA 59.902 41.667 0.00 0.00 39.17 3.67
6977 9663 1.613437 CCACCCTGAAACCAATGACAC 59.387 52.381 0.00 0.00 0.00 3.67
7014 9700 7.364200 CGTAAATAACAAATCCAACTCCACAA 58.636 34.615 0.00 0.00 0.00 3.33
7074 9761 5.230936 CGAATGACACTGACACATGAGATAC 59.769 44.000 0.00 0.00 0.00 2.24
7091 9778 4.430007 TCCTTGTATACACAGCGAATGAC 58.570 43.478 4.68 0.00 35.67 3.06
7144 9831 6.255453 CGTCCACAAGTCAAATTTGTCAAATT 59.745 34.615 16.26 16.26 42.62 1.82
7145 9832 5.748152 CGTCCACAAGTCAAATTTGTCAAAT 59.252 36.000 17.47 4.91 36.67 2.32
7146 9833 5.098893 CGTCCACAAGTCAAATTTGTCAAA 58.901 37.500 17.47 0.00 36.67 2.69
7147 9834 4.396478 TCGTCCACAAGTCAAATTTGTCAA 59.604 37.500 17.47 0.00 36.67 3.18
7148 9835 3.942115 TCGTCCACAAGTCAAATTTGTCA 59.058 39.130 17.47 0.00 36.67 3.58
7149 9836 4.545823 TCGTCCACAAGTCAAATTTGTC 57.454 40.909 17.47 12.30 36.67 3.18
7150 9837 4.974368 TTCGTCCACAAGTCAAATTTGT 57.026 36.364 17.47 0.00 39.23 2.83
7151 9838 5.976534 TGATTTCGTCCACAAGTCAAATTTG 59.023 36.000 12.15 12.15 0.00 2.32
7152 9839 6.142818 TGATTTCGTCCACAAGTCAAATTT 57.857 33.333 0.00 0.00 0.00 1.82
7153 9840 5.766150 TGATTTCGTCCACAAGTCAAATT 57.234 34.783 0.00 0.00 0.00 1.82
7154 9841 5.766150 TTGATTTCGTCCACAAGTCAAAT 57.234 34.783 0.00 0.00 29.41 2.32
7155 9842 5.568685 TTTGATTTCGTCCACAAGTCAAA 57.431 34.783 1.87 1.87 37.22 2.69
7156 9843 5.766150 ATTTGATTTCGTCCACAAGTCAA 57.234 34.783 0.00 0.00 30.18 3.18
7157 9844 5.766150 AATTTGATTTCGTCCACAAGTCA 57.234 34.783 0.00 0.00 0.00 3.41
7158 9845 6.664515 TGTAATTTGATTTCGTCCACAAGTC 58.335 36.000 0.00 0.00 0.00 3.01
7159 9846 6.485313 TCTGTAATTTGATTTCGTCCACAAGT 59.515 34.615 0.00 0.00 0.00 3.16
7160 9847 6.898041 TCTGTAATTTGATTTCGTCCACAAG 58.102 36.000 0.00 0.00 0.00 3.16
7161 9848 6.869315 TCTGTAATTTGATTTCGTCCACAA 57.131 33.333 0.00 0.00 0.00 3.33
7162 9849 6.869315 TTCTGTAATTTGATTTCGTCCACA 57.131 33.333 0.00 0.00 0.00 4.17
7163 9850 7.526608 TCATTCTGTAATTTGATTTCGTCCAC 58.473 34.615 0.00 0.00 0.00 4.02
7164 9851 7.680442 TCATTCTGTAATTTGATTTCGTCCA 57.320 32.000 0.00 0.00 0.00 4.02
7165 9852 8.237267 AGTTCATTCTGTAATTTGATTTCGTCC 58.763 33.333 0.00 0.00 0.00 4.79
7166 9853 9.055248 CAGTTCATTCTGTAATTTGATTTCGTC 57.945 33.333 0.00 0.00 0.00 4.20
7167 9854 7.538678 GCAGTTCATTCTGTAATTTGATTTCGT 59.461 33.333 0.00 0.00 37.70 3.85
7168 9855 7.008628 GGCAGTTCATTCTGTAATTTGATTTCG 59.991 37.037 0.00 0.00 37.70 3.46
7169 9856 7.276438 GGGCAGTTCATTCTGTAATTTGATTTC 59.724 37.037 0.00 0.00 37.70 2.17
7170 9857 7.099120 GGGCAGTTCATTCTGTAATTTGATTT 58.901 34.615 0.00 0.00 37.70 2.17
7171 9858 6.625740 CGGGCAGTTCATTCTGTAATTTGATT 60.626 38.462 0.00 0.00 37.70 2.57
7172 9859 5.163622 CGGGCAGTTCATTCTGTAATTTGAT 60.164 40.000 0.00 0.00 37.70 2.57
7173 9860 4.155826 CGGGCAGTTCATTCTGTAATTTGA 59.844 41.667 0.00 0.00 37.70 2.69
7174 9861 4.082787 ACGGGCAGTTCATTCTGTAATTTG 60.083 41.667 0.00 0.00 37.70 2.32
7175 9862 4.079253 ACGGGCAGTTCATTCTGTAATTT 58.921 39.130 0.00 0.00 37.70 1.82
7176 9863 3.440173 CACGGGCAGTTCATTCTGTAATT 59.560 43.478 0.00 0.00 37.70 1.40
7177 9864 3.009723 CACGGGCAGTTCATTCTGTAAT 58.990 45.455 0.00 0.00 37.70 1.89
7178 9865 2.037902 TCACGGGCAGTTCATTCTGTAA 59.962 45.455 0.00 0.00 37.70 2.41
7179 9866 1.621317 TCACGGGCAGTTCATTCTGTA 59.379 47.619 0.00 0.00 37.70 2.74
7180 9867 0.396435 TCACGGGCAGTTCATTCTGT 59.604 50.000 0.00 0.00 37.70 3.41
7181 9868 1.522668 TTCACGGGCAGTTCATTCTG 58.477 50.000 0.00 0.00 38.35 3.02
7182 9869 1.880027 GTTTCACGGGCAGTTCATTCT 59.120 47.619 0.00 0.00 0.00 2.40
7183 9870 1.880027 AGTTTCACGGGCAGTTCATTC 59.120 47.619 0.00 0.00 0.00 2.67
7184 9871 1.981256 AGTTTCACGGGCAGTTCATT 58.019 45.000 0.00 0.00 0.00 2.57
7185 9872 2.851263 TAGTTTCACGGGCAGTTCAT 57.149 45.000 0.00 0.00 0.00 2.57
7186 9873 2.851263 ATAGTTTCACGGGCAGTTCA 57.149 45.000 0.00 0.00 0.00 3.18
7187 9874 3.500680 TGAAATAGTTTCACGGGCAGTTC 59.499 43.478 1.24 0.00 44.21 3.01
7188 9875 3.482436 TGAAATAGTTTCACGGGCAGTT 58.518 40.909 1.24 0.00 44.21 3.16
7189 9876 3.134574 TGAAATAGTTTCACGGGCAGT 57.865 42.857 1.24 0.00 44.21 4.40
7197 9884 4.753107 GGTCAACCTCGTGAAATAGTTTCA 59.247 41.667 1.24 1.24 46.68 2.69
7198 9885 4.995487 AGGTCAACCTCGTGAAATAGTTTC 59.005 41.667 0.00 0.00 44.77 2.78
7199 9886 4.969484 AGGTCAACCTCGTGAAATAGTTT 58.031 39.130 0.00 0.00 44.77 2.66
7200 9887 4.618920 AGGTCAACCTCGTGAAATAGTT 57.381 40.909 0.00 0.00 44.77 2.24
7213 9900 2.792749 CGTCACACAAAAAGGTCAACC 58.207 47.619 0.00 0.00 0.00 3.77
7214 9901 2.182014 GCGTCACACAAAAAGGTCAAC 58.818 47.619 0.00 0.00 0.00 3.18
7215 9902 1.133407 GGCGTCACACAAAAAGGTCAA 59.867 47.619 0.00 0.00 0.00 3.18
7216 9903 0.736053 GGCGTCACACAAAAAGGTCA 59.264 50.000 0.00 0.00 0.00 4.02
7217 9904 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85
7218 9905 1.720694 CGGGCGTCACACAAAAAGGT 61.721 55.000 0.00 0.00 0.00 3.50
7219 9906 1.008995 CGGGCGTCACACAAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
7220 9907 0.316689 GTCGGGCGTCACACAAAAAG 60.317 55.000 0.00 0.00 0.00 2.27
7221 9908 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
7222 9909 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
7223 9910 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
7224 9911 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
7226 9913 2.101209 CTTTGTGTCGGGCGTCACAC 62.101 60.000 3.82 3.82 42.01 3.82
7227 9914 1.885388 CTTTGTGTCGGGCGTCACA 60.885 57.895 0.00 0.00 40.99 3.58
7228 9915 2.604174 CCTTTGTGTCGGGCGTCAC 61.604 63.158 0.00 0.00 35.37 3.67
7229 9916 2.280524 CCTTTGTGTCGGGCGTCA 60.281 61.111 0.00 0.00 0.00 4.35
7230 9917 2.280592 ACCTTTGTGTCGGGCGTC 60.281 61.111 0.00 0.00 0.00 5.19
7231 9918 2.590575 CACCTTTGTGTCGGGCGT 60.591 61.111 0.00 0.00 37.72 5.68
7232 9919 4.025401 GCACCTTTGTGTCGGGCG 62.025 66.667 0.00 0.00 44.65 6.13
7233 9920 3.670377 GGCACCTTTGTGTCGGGC 61.670 66.667 0.00 0.00 44.65 6.13
7238 9925 2.656947 ATAGTGTGGCACCTTTGTGT 57.343 45.000 16.26 0.00 44.65 3.72
7239 9926 4.458989 ACAATATAGTGTGGCACCTTTGTG 59.541 41.667 16.26 11.16 45.65 3.33
7240 9927 4.458989 CACAATATAGTGTGGCACCTTTGT 59.541 41.667 22.50 14.72 44.29 2.83
7241 9928 4.985413 CACAATATAGTGTGGCACCTTTG 58.015 43.478 22.50 14.17 44.29 2.77
7251 9938 2.936498 GAGGCGTTGCACAATATAGTGT 59.064 45.455 0.00 0.00 41.52 3.55
7252 9939 2.935849 TGAGGCGTTGCACAATATAGTG 59.064 45.455 0.00 0.00 42.37 2.74
7253 9940 2.936498 GTGAGGCGTTGCACAATATAGT 59.064 45.455 0.00 0.00 35.19 2.12
7254 9941 2.935849 TGTGAGGCGTTGCACAATATAG 59.064 45.455 0.00 0.00 41.61 1.31
7255 9942 2.935849 CTGTGAGGCGTTGCACAATATA 59.064 45.455 0.00 0.00 43.65 0.86
7256 9943 1.739466 CTGTGAGGCGTTGCACAATAT 59.261 47.619 0.00 0.00 43.65 1.28
7257 9944 1.155889 CTGTGAGGCGTTGCACAATA 58.844 50.000 0.00 0.00 43.65 1.90
7258 9945 0.534877 TCTGTGAGGCGTTGCACAAT 60.535 50.000 0.00 0.00 43.65 2.71
7259 9946 0.534877 ATCTGTGAGGCGTTGCACAA 60.535 50.000 0.00 0.00 43.65 3.33
7260 9947 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
7261 9948 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
7262 9949 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
7263 9950 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
7269 9956 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
7270 9957 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
7271 9958 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
7272 9959 2.873367 CGTGTAGCGCCTATCTGTG 58.127 57.895 2.29 0.00 0.00 3.66
7300 9987 3.357079 GCAGTCTGGGGTGCAACG 61.357 66.667 1.14 0.00 39.62 4.10
7301 9988 2.124507 TAGGCAGTCTGGGGTGCAAC 62.125 60.000 1.14 0.00 41.75 4.17
7302 9989 1.422977 TTAGGCAGTCTGGGGTGCAA 61.423 55.000 1.14 0.00 41.75 4.08
7303 9990 1.422977 TTTAGGCAGTCTGGGGTGCA 61.423 55.000 1.14 0.00 41.75 4.57
7304 9991 0.251165 TTTTAGGCAGTCTGGGGTGC 60.251 55.000 1.14 0.00 39.08 5.01
7305 9992 2.286365 TTTTTAGGCAGTCTGGGGTG 57.714 50.000 1.14 0.00 0.00 4.61
7306 9993 3.165071 CAATTTTTAGGCAGTCTGGGGT 58.835 45.455 1.14 0.00 0.00 4.95
7307 9994 2.094026 GCAATTTTTAGGCAGTCTGGGG 60.094 50.000 1.14 0.00 0.00 4.96
7308 9995 2.827921 AGCAATTTTTAGGCAGTCTGGG 59.172 45.455 1.14 0.00 0.00 4.45
7309 9996 5.183904 ACTTAGCAATTTTTAGGCAGTCTGG 59.816 40.000 1.14 0.00 0.00 3.86
7310 9997 6.072508 TGACTTAGCAATTTTTAGGCAGTCTG 60.073 38.462 0.00 0.00 33.92 3.51
7311 9998 6.003950 TGACTTAGCAATTTTTAGGCAGTCT 58.996 36.000 0.00 0.00 33.92 3.24
7312 9999 6.254281 TGACTTAGCAATTTTTAGGCAGTC 57.746 37.500 0.00 0.00 33.59 3.51
7313 10000 6.840780 ATGACTTAGCAATTTTTAGGCAGT 57.159 33.333 0.00 0.00 0.00 4.40
7314 10001 7.062605 CACAATGACTTAGCAATTTTTAGGCAG 59.937 37.037 0.00 0.00 0.00 4.85
7315 10002 6.867816 CACAATGACTTAGCAATTTTTAGGCA 59.132 34.615 0.00 0.00 0.00 4.75
7316 10003 6.311200 CCACAATGACTTAGCAATTTTTAGGC 59.689 38.462 0.00 0.00 0.00 3.93
7317 10004 7.601856 TCCACAATGACTTAGCAATTTTTAGG 58.398 34.615 0.00 0.00 0.00 2.69
7318 10005 7.274250 GCTCCACAATGACTTAGCAATTTTTAG 59.726 37.037 0.00 0.00 0.00 1.85
7319 10006 7.090173 GCTCCACAATGACTTAGCAATTTTTA 58.910 34.615 0.00 0.00 0.00 1.52
7320 10007 5.928264 GCTCCACAATGACTTAGCAATTTTT 59.072 36.000 0.00 0.00 0.00 1.94
7321 10008 5.473039 GCTCCACAATGACTTAGCAATTTT 58.527 37.500 0.00 0.00 0.00 1.82
7322 10009 4.379813 CGCTCCACAATGACTTAGCAATTT 60.380 41.667 0.00 0.00 0.00 1.82
7323 10010 3.127548 CGCTCCACAATGACTTAGCAATT 59.872 43.478 0.00 0.00 0.00 2.32
7324 10011 2.679837 CGCTCCACAATGACTTAGCAAT 59.320 45.455 0.00 0.00 0.00 3.56
7325 10012 2.076100 CGCTCCACAATGACTTAGCAA 58.924 47.619 0.00 0.00 0.00 3.91
7326 10013 1.725641 CGCTCCACAATGACTTAGCA 58.274 50.000 0.00 0.00 0.00 3.49
7327 10014 0.375106 GCGCTCCACAATGACTTAGC 59.625 55.000 0.00 0.00 0.00 3.09
7328 10015 1.009829 GGCGCTCCACAATGACTTAG 58.990 55.000 7.64 0.00 0.00 2.18
7329 10016 0.613260 AGGCGCTCCACAATGACTTA 59.387 50.000 7.64 0.00 33.74 2.24
7330 10017 0.613260 TAGGCGCTCCACAATGACTT 59.387 50.000 7.64 0.00 33.74 3.01
7331 10018 0.613260 TTAGGCGCTCCACAATGACT 59.387 50.000 7.64 0.00 33.74 3.41
7332 10019 1.009829 CTTAGGCGCTCCACAATGAC 58.990 55.000 7.64 0.00 33.74 3.06
7333 10020 0.901827 TCTTAGGCGCTCCACAATGA 59.098 50.000 7.64 0.00 33.74 2.57
7334 10021 1.293924 CTCTTAGGCGCTCCACAATG 58.706 55.000 7.64 0.00 33.74 2.82
7335 10022 0.462759 GCTCTTAGGCGCTCCACAAT 60.463 55.000 7.64 0.00 33.74 2.71
7336 10023 1.079127 GCTCTTAGGCGCTCCACAA 60.079 57.895 7.64 0.00 33.74 3.33
7337 10024 0.683179 TAGCTCTTAGGCGCTCCACA 60.683 55.000 7.64 0.00 37.68 4.17
7338 10025 0.031449 CTAGCTCTTAGGCGCTCCAC 59.969 60.000 7.64 0.00 37.68 4.02
7339 10026 1.109920 CCTAGCTCTTAGGCGCTCCA 61.110 60.000 7.64 0.00 42.50 3.86
7340 10027 1.663173 CCTAGCTCTTAGGCGCTCC 59.337 63.158 7.64 0.00 42.50 4.70
7353 10040 4.475312 ACTATACAGTGCAGCGCCTAGC 62.475 54.545 2.29 7.01 38.99 3.42
7354 10041 1.338337 ACTATACAGTGCAGCGCCTAG 59.662 52.381 2.29 0.00 32.25 3.02
7355 10042 1.067060 CACTATACAGTGCAGCGCCTA 59.933 52.381 2.29 0.00 45.44 3.93
7356 10043 0.179100 CACTATACAGTGCAGCGCCT 60.179 55.000 2.29 0.00 45.44 5.52
7357 10044 2.301505 CACTATACAGTGCAGCGCC 58.698 57.895 2.29 0.00 45.44 6.53
7365 10052 1.681793 CTAGGCGCCACACTATACAGT 59.318 52.381 31.54 5.27 34.42 3.55
7366 10053 1.603172 GCTAGGCGCCACACTATACAG 60.603 57.143 31.54 11.37 0.00 2.74
7367 10054 0.387929 GCTAGGCGCCACACTATACA 59.612 55.000 31.54 0.33 0.00 2.29
7368 10055 0.674534 AGCTAGGCGCCACACTATAC 59.325 55.000 31.54 8.64 40.39 1.47
7369 10056 0.959553 GAGCTAGGCGCCACACTATA 59.040 55.000 31.54 10.17 40.39 1.31
7370 10057 0.757188 AGAGCTAGGCGCCACACTAT 60.757 55.000 31.54 16.52 40.39 2.12
7371 10058 1.379977 AGAGCTAGGCGCCACACTA 60.380 57.895 31.54 11.42 40.39 2.74
7372 10059 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
7373 10060 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
7374 10061 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
7375 10062 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
7376 10063 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.