AutoCloner

Multiple sequence alignment - TraesCS5D01G094500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G094500	chr5D	100.000	2480	0	0	1	2480	104143955	104141476	0.000000e+00	4580.0
1	TraesCS5D01G094500	chr5D	85.766	836	79	27	836	1640	104113316	104112490	0.000000e+00	848.0
2	TraesCS5D01G094500	chr5D	88.649	185	18	2	1846	2028	536086302	536086119	3.210000e-54	222.0
3	TraesCS5D01G094500	chr5A	93.146	1459	55	16	721	2145	94092113	94093560	0.000000e+00	2098.0
4	TraesCS5D01G094500	chr5A	89.545	593	54	7	976	1566	94310775	94311361	0.000000e+00	745.0
5	TraesCS5D01G094500	chr5A	88.398	362	17	9	2141	2480	94093816	94094174	1.770000e-111	412.0
6	TraesCS5D01G094500	chr5A	85.000	100	13	2	2267	2366	556090628	556090725	1.570000e-17	100.0
7	TraesCS5D01G094500	chr5A	100.000	30	0	0	623	652	94091668	94091697	3.450000e-04	56.5
8	TraesCS5D01G094500	chr5B	90.156	1473	73	29	606	2037	113457251	113455810	0.000000e+00	1851.0
9	TraesCS5D01G094500	chr5B	86.211	834	79	22	836	1640	113328147	113327321	0.000000e+00	870.0
10	TraesCS5D01G094500	chr5B	93.607	219	10	2	2039	2257	113455720	113455506	8.550000e-85	324.0
11	TraesCS5D01G094500	chr5B	92.437	119	6	2	2183	2299	113455004	113455121	1.530000e-37	167.0
12	TraesCS5D01G094500	chr5B	80.000	160	24	5	461	613	383514467	383514309	7.250000e-21	111.0
13	TraesCS5D01G094500	chr4D	89.414	614	57	5	1	606	409313918	409314531	0.000000e+00	767.0
14	TraesCS5D01G094500	chr4D	88.960	625	57	7	1	617	449446263	449446883	0.000000e+00	761.0
15	TraesCS5D01G094500	chr4D	88.998	609	58	7	1	602	21137970	21138576	0.000000e+00	745.0
16	TraesCS5D01G094500	chrUn	89.141	617	54	8	1	608	5440407	5441019	0.000000e+00	756.0
17	TraesCS5D01G094500	chr1D	89.088	614	59	5	1	606	421526925	421526312	0.000000e+00	756.0
18	TraesCS5D01G094500	chr7D	88.799	616	59	6	1	606	528486093	528486708	0.000000e+00	747.0
19	TraesCS5D01G094500	chr7D	90.426	188	16	2	1846	2033	33062238	33062423	1.900000e-61	246.0
20	TraesCS5D01G094500	chr7D	88.298	188	18	4	1847	2033	504757128	504756944	3.210000e-54	222.0
21	TraesCS5D01G094500	chr6D	88.725	612	60	6	3	606	48470771	48471381	0.000000e+00	739.0
22	TraesCS5D01G094500	chr6D	84.755	715	66	28	839	1531	9147022	9147715	0.000000e+00	676.0
23	TraesCS5D01G094500	chr6D	91.667	48	3	1	2180	2227	150777454	150777408	5.730000e-07	65.8
24	TraesCS5D01G094500	chr2A	88.264	605	68	3	5	607	701850386	701850989	0.000000e+00	721.0
25	TraesCS5D01G094500	chr2A	90.476	84	7	1	2267	2350	724519037	724518955	2.610000e-20	110.0
26	TraesCS5D01G094500	chr2A	84.685	111	10	7	2240	2349	73546099	73546203	1.210000e-18	104.0
27	TraesCS5D01G094500	chr2D	88.158	608	57	9	1	606	361391602	361392196	0.000000e+00	710.0
28	TraesCS5D01G094500	chr6B	86.095	676	61	19	861	1508	17091811	17091141	0.000000e+00	697.0
29	TraesCS5D01G094500	chr6B	84.914	696	68	24	887	1564	16970484	16971160	0.000000e+00	669.0
30	TraesCS5D01G094500	chr6A	81.332	916	94	48	864	1735	10138249	10137367	0.000000e+00	673.0
31	TraesCS5D01G094500	chr4A	86.339	183	21	2	1846	2028	635727115	635727293	1.950000e-46	196.0
32	TraesCS5D01G094500	chr4A	100.000	31	0	0	2181	2211	640773208	640773178	9.580000e-05	58.4
33	TraesCS5D01G094500	chr4A	100.000	30	0	0	2181	2210	410101930	410101959	3.450000e-04	56.5
34	TraesCS5D01G094500	chr1B	91.566	83	7	0	2267	2349	684089039	684089121	5.600000e-22	115.0
35	TraesCS5D01G094500	chr1B	100.000	28	0	0	1848	1875	467275206	467275233	4.000000e-03	52.8
36	TraesCS5D01G094500	chr3A	91.566	83	6	1	2267	2349	737369257	737369176	2.020000e-21	113.0
37	TraesCS5D01G094500	chr1A	91.566	83	6	1	2267	2349	320485592	320485673	2.020000e-21	113.0
38	TraesCS5D01G094500	chr3B	90.361	83	7	1	2267	2349	820294794	820294875	9.380000e-20	108.0
39	TraesCS5D01G094500	chr3B	92.157	51	4	0	2167	2217	732152049	732151999	3.420000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G094500	chr5D	104141476	104143955	2479	True	4580.0	4580	100.0000	1	2480	1	chr5D.!!$R2	2479
1	TraesCS5D01G094500	chr5D	104112490	104113316	826	True	848.0	848	85.7660	836	1640	1	chr5D.!!$R1	804
2	TraesCS5D01G094500	chr5A	94091668	94094174	2506	False	855.5	2098	93.8480	623	2480	3	chr5A.!!$F3	1857
3	TraesCS5D01G094500	chr5A	94310775	94311361	586	False	745.0	745	89.5450	976	1566	1	chr5A.!!$F1	590
4	TraesCS5D01G094500	chr5B	113455506	113457251	1745	True	1087.5	1851	91.8815	606	2257	2	chr5B.!!$R3	1651
5	TraesCS5D01G094500	chr5B	113327321	113328147	826	True	870.0	870	86.2110	836	1640	1	chr5B.!!$R1	804
6	TraesCS5D01G094500	chr4D	409313918	409314531	613	False	767.0	767	89.4140	1	606	1	chr4D.!!$F2	605
7	TraesCS5D01G094500	chr4D	449446263	449446883	620	False	761.0	761	88.9600	1	617	1	chr4D.!!$F3	616
8	TraesCS5D01G094500	chr4D	21137970	21138576	606	False	745.0	745	88.9980	1	602	1	chr4D.!!$F1	601
9	TraesCS5D01G094500	chrUn	5440407	5441019	612	False	756.0	756	89.1410	1	608	1	chrUn.!!$F1	607
10	TraesCS5D01G094500	chr1D	421526312	421526925	613	True	756.0	756	89.0880	1	606	1	chr1D.!!$R1	605
11	TraesCS5D01G094500	chr7D	528486093	528486708	615	False	747.0	747	88.7990	1	606	1	chr7D.!!$F2	605
12	TraesCS5D01G094500	chr6D	48470771	48471381	610	False	739.0	739	88.7250	3	606	1	chr6D.!!$F2	603
13	TraesCS5D01G094500	chr6D	9147022	9147715	693	False	676.0	676	84.7550	839	1531	1	chr6D.!!$F1	692
14	TraesCS5D01G094500	chr2A	701850386	701850989	603	False	721.0	721	88.2640	5	607	1	chr2A.!!$F2	602
15	TraesCS5D01G094500	chr2D	361391602	361392196	594	False	710.0	710	88.1580	1	606	1	chr2D.!!$F1	605
16	TraesCS5D01G094500	chr6B	17091141	17091811	670	True	697.0	697	86.0950	861	1508	1	chr6B.!!$R1	647
17	TraesCS5D01G094500	chr6B	16970484	16971160	676	False	669.0	669	84.9140	887	1564	1	chr6B.!!$F1	677
18	TraesCS5D01G094500	chr6A	10137367	10138249	882	True	673.0	673	81.3320	864	1735	1	chr6A.!!$R1	871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
169	170	0.178953	AAATGTTGAGCCCCTGCACT	60.179	50.0	0.0	0.0	41.13	4.4	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1587	2079	0.72379	CACGACTGACGACGGTACAC	60.724	60.0	6.52	0.0	45.77	2.9	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	0.675083	TCGTTCGAAACCCTGCACTA	59.325	50.000	0.00	0.00	0.00	2.74
67	68	2.551270	AGCTTTGGGAGGTGATGACTA	58.449	47.619	0.00	0.00	34.08	2.59
75	76	3.368531	GGGAGGTGATGACTACTTGTGTC	60.369	52.174	0.00	0.00	35.21	3.67
169	170	0.178953	AAATGTTGAGCCCCTGCACT	60.179	50.000	0.00	0.00	41.13	4.40
174	175	0.615331	TTGAGCCCCTGCACTAAGAG	59.385	55.000	0.00	0.00	41.13	2.85
208	209	9.439500	CATTTGAATAGTTTGTCCAATTCCATT	57.561	29.630	0.00	0.00	0.00	3.16
249	250	7.446931	TGGCACACTCATTAGTATCTTCAAAAA	59.553	33.333	0.00	0.00	33.48	1.94
267	268	4.900635	AAAAGACTTGATTGAGCACGTT	57.099	36.364	0.00	0.00	0.00	3.99
276	277	2.198827	TTGAGCACGTTTGGGATCAT	57.801	45.000	0.00	0.00	0.00	2.45
337	339	5.339611	CGTTGAAGACAATTTCGATTTGGTC	59.660	40.000	11.83	6.63	38.32	4.02
432	437	5.049954	TGGACGTGCAAACTAGTTTTGATAC	60.050	40.000	18.25	12.80	46.76	2.24
477	482	2.225091	TGGTGAACAGGATGGAGCAAAT	60.225	45.455	0.00	0.00	43.62	2.32
525	530	2.224159	ACCGCATTCCAGGACAGGT	61.224	57.895	0.00	0.00	0.00	4.00
553	564	3.738830	CGACCCCGTCATCCTATAAAA	57.261	47.619	0.00	0.00	32.09	1.52
682	697	2.589798	ACGGTAACATGTGATACCCG	57.410	50.000	17.40	16.60	39.46	5.28
732	1102	1.815421	CACATGCTAGACCGGCCAC	60.815	63.158	0.00	0.00	0.00	5.01
733	1103	2.290287	ACATGCTAGACCGGCCACA	61.290	57.895	0.00	0.00	0.00	4.17
734	1104	1.522355	CATGCTAGACCGGCCACAG	60.522	63.158	0.00	0.00	0.00	3.66
735	1105	2.735772	ATGCTAGACCGGCCACAGG	61.736	63.158	0.00	0.00	0.00	4.00
736	1106	4.162690	GCTAGACCGGCCACAGGG	62.163	72.222	0.00	0.00	37.18	4.45
737	1107	2.683933	CTAGACCGGCCACAGGGT	60.684	66.667	0.00	0.31	39.83	4.34
738	1108	2.203877	TAGACCGGCCACAGGGTT	60.204	61.111	0.00	0.00	36.46	4.11
739	1109	1.838073	CTAGACCGGCCACAGGGTTT	61.838	60.000	0.00	0.00	36.46	3.27
740	1110	2.119484	TAGACCGGCCACAGGGTTTG	62.119	60.000	0.00	0.00	36.46	2.93
741	1111	3.485346	GACCGGCCACAGGGTTTGA	62.485	63.158	0.00	0.00	36.46	2.69
742	1112	2.672996	CCGGCCACAGGGTTTGAG	60.673	66.667	2.24	0.00	36.17	3.02
743	1113	2.429930	CGGCCACAGGGTTTGAGA	59.570	61.111	2.24	0.00	36.17	3.27
748	1118	1.476833	GCCACAGGGTTTGAGAGAACA	60.477	52.381	0.00	0.00	36.17	3.18
758	1128	3.918258	TTGAGAGAACAAACGAACACG	57.082	42.857	0.00	0.00	0.00	4.49
881	1251	2.317230	CGAACCTTCGTGCCAAAGT	58.683	52.632	0.00	0.00	45.09	2.66
972	1365	0.997363	TCTTCCTCGACTCCCAGGTA	59.003	55.000	0.00	0.00	0.00	3.08
974	1368	0.324091	TTCCTCGACTCCCAGGTACC	60.324	60.000	2.73	2.73	0.00	3.34
991	1396	2.034879	CCAGCACCAACAGGTAGCG	61.035	63.158	0.00	0.00	35.77	4.26
1125	1547	2.357517	CTGTGTGGCCACGACCTC	60.358	66.667	30.07	17.29	44.92	3.85
1746	2257	3.764434	CTGAGTCTAGAGCCACTTTGGTA	59.236	47.826	0.00	0.00	40.46	3.25
1844	2359	2.281761	CAGCTCGTTTGGCACCCT	60.282	61.111	0.00	0.00	0.00	4.34
1845	2360	1.898574	CAGCTCGTTTGGCACCCTT	60.899	57.895	0.00	0.00	0.00	3.95
1846	2361	1.898574	AGCTCGTTTGGCACCCTTG	60.899	57.895	0.00	0.00	0.00	3.61
1847	2362	1.896660	GCTCGTTTGGCACCCTTGA	60.897	57.895	0.00	0.00	0.00	3.02
1848	2363	1.452145	GCTCGTTTGGCACCCTTGAA	61.452	55.000	0.00	0.00	0.00	2.69
1849	2364	1.028905	CTCGTTTGGCACCCTTGAAA	58.971	50.000	0.00	0.00	0.00	2.69
1850	2365	1.613437	CTCGTTTGGCACCCTTGAAAT	59.387	47.619	0.00	0.00	0.00	2.17
1851	2366	1.339610	TCGTTTGGCACCCTTGAAATG	59.660	47.619	0.00	0.00	0.00	2.32
1852	2367	1.339610	CGTTTGGCACCCTTGAAATGA	59.660	47.619	0.00	0.00	0.00	2.57
1853	2368	2.223923	CGTTTGGCACCCTTGAAATGAA	60.224	45.455	0.00	0.00	0.00	2.57
1854	2369	3.739519	CGTTTGGCACCCTTGAAATGAAA	60.740	43.478	0.00	0.00	0.00	2.69
1855	2370	4.388485	GTTTGGCACCCTTGAAATGAAAT	58.612	39.130	0.00	0.00	0.00	2.17
1856	2371	3.681593	TGGCACCCTTGAAATGAAATG	57.318	42.857	0.00	0.00	0.00	2.32
1857	2372	3.237746	TGGCACCCTTGAAATGAAATGA	58.762	40.909	0.00	0.00	0.00	2.57
1858	2373	3.645212	TGGCACCCTTGAAATGAAATGAA	59.355	39.130	0.00	0.00	0.00	2.57
1859	2374	4.102210	TGGCACCCTTGAAATGAAATGAAA	59.898	37.500	0.00	0.00	0.00	2.69
1975	2530	6.549364	CCATATCCTGTTTGGCTACCATTTTA	59.451	38.462	0.00	0.00	31.53	1.52
2002	2557	8.220434	GCAACAATTGATAAACCAACACATAAC	58.780	33.333	13.59	0.00	0.00	1.89
2094	2737	7.811236	ACATGTTCATCTTCATAAAGCACAAAG	59.189	33.333	0.00	0.00	32.18	2.77
2212	3115	2.364002	CCAGAACAAAAATGACCCGGTT	59.636	45.455	0.00	0.00	0.00	4.44
2233	3136	7.444183	CCGGTTTCCACATATAGACAATACATT	59.556	37.037	0.00	0.00	0.00	2.71
2267	3170	8.893727	ACCAAGCAATAATATACACAAGAGTTC	58.106	33.333	0.00	0.00	0.00	3.01
2282	3185	4.968971	AGAGTTCCCTCCGTAAAGAAAA	57.031	40.909	0.00	0.00	38.58	2.29
2283	3186	5.500546	AGAGTTCCCTCCGTAAAGAAAAT	57.499	39.130	0.00	0.00	38.58	1.82
2284	3187	6.616237	AGAGTTCCCTCCGTAAAGAAAATA	57.384	37.500	0.00	0.00	38.58	1.40
2285	3188	7.196637	AGAGTTCCCTCCGTAAAGAAAATAT	57.803	36.000	0.00	0.00	38.58	1.28
2286	3189	8.315220	AGAGTTCCCTCCGTAAAGAAAATATA	57.685	34.615	0.00	0.00	38.58	0.86
2291	3194	9.962809	TTCCCTCCGTAAAGAAAATATAAAAGA	57.037	29.630	0.00	0.00	0.00	2.52
2292	3195	9.609346	TCCCTCCGTAAAGAAAATATAAAAGAG	57.391	33.333	0.00	0.00	0.00	2.85
2389	3314	0.958091	TGTGCAGCGGTAAAAATGCT	59.042	45.000	0.00	0.00	39.42	3.79
2404	3329	7.277760	GGTAAAAATGCTAGCCAATACCAAAAG	59.722	37.037	13.29	0.00	0.00	2.27
2454	3379	8.746922	TGTTGAAGCATCATTTAGTTCATTTC	57.253	30.769	0.00	0.00	34.96	2.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	3.967467	AGCTTCCTTTCATCCCATGAT	57.033	42.857	0.00	0.00	39.39	2.45
111	112	1.554392	CTTGGTCGAAGATGCTCTCG	58.446	55.000	0.00	0.00	40.67	4.04
169	170	0.326595	TCAAATGTGGCCGGCTCTTA	59.673	50.000	28.56	11.09	0.00	2.10
174	175	1.102978	ACTATTCAAATGTGGCCGGC	58.897	50.000	21.18	21.18	0.00	6.13
208	209	2.327343	GCCAATCACGCAGCTCACA	61.327	57.895	0.00	0.00	0.00	3.58
236	237	8.510505	GCTCAATCAAGTCTTTTTGAAGATACT	58.489	33.333	8.39	0.00	40.21	2.12
238	239	8.292448	GTGCTCAATCAAGTCTTTTTGAAGATA	58.708	33.333	8.39	0.00	40.21	1.98
249	250	2.549754	CCAAACGTGCTCAATCAAGTCT	59.450	45.455	0.00	0.00	0.00	3.24
267	268	3.395054	TGGTTGCCAATATGATCCCAA	57.605	42.857	0.00	0.00	0.00	4.12
304	305	8.123575	TCGAAATTGTCTTCAACGAACATAAAA	58.876	29.630	0.00	0.00	36.33	1.52
314	316	6.675515	GACCAAATCGAAATTGTCTTCAAC	57.324	37.500	11.83	0.00	36.33	3.18
359	363	9.287373	AGTAGTTTTACAACCCAATCGAAATTA	57.713	29.630	0.00	0.00	32.70	1.40
459	464	2.041485	TCCATTTGCTCCATCCTGTTCA	59.959	45.455	0.00	0.00	0.00	3.18
461	466	2.905415	TCCATTTGCTCCATCCTGTT	57.095	45.000	0.00	0.00	0.00	3.16
553	564	4.939271	ACGTCCGGTTTGATTGAATTTTT	58.061	34.783	0.00	0.00	0.00	1.94
559	570	3.220447	GGACGTCCGGTTTGATTGA	57.780	52.632	20.85	0.00	0.00	2.57
581	592	4.933064	CTCCACCGCGCGATCTCC	62.933	72.222	34.63	0.00	0.00	3.71
583	594	3.760035	AACTCCACCGCGCGATCT	61.760	61.111	34.63	10.44	0.00	2.75
665	680	1.937899	GTGCGGGTATCACATGTTACC	59.062	52.381	15.68	15.68	38.85	2.85
677	692	1.521906	GTGTGTGTGTGTGCGGGTA	60.522	57.895	0.00	0.00	0.00	3.69
680	695	0.523125	CTTTGTGTGTGTGTGTGCGG	60.523	55.000	0.00	0.00	0.00	5.69
682	697	3.168193	GTTACTTTGTGTGTGTGTGTGC	58.832	45.455	0.00	0.00	0.00	4.57
724	1082	3.491598	CTCAAACCCTGTGGCCGGT	62.492	63.158	1.90	0.00	33.59	5.28
737	1107	3.062909	CCGTGTTCGTTTGTTCTCTCAAA	59.937	43.478	0.00	0.00	35.36	2.69
738	1108	2.605818	CCGTGTTCGTTTGTTCTCTCAA	59.394	45.455	0.00	0.00	35.01	3.02
739	1109	2.159212	TCCGTGTTCGTTTGTTCTCTCA	60.159	45.455	0.00	0.00	35.01	3.27
740	1110	2.466846	TCCGTGTTCGTTTGTTCTCTC	58.533	47.619	0.00	0.00	35.01	3.20
741	1111	2.100252	TCTCCGTGTTCGTTTGTTCTCT	59.900	45.455	0.00	0.00	35.01	3.10
742	1112	2.466846	TCTCCGTGTTCGTTTGTTCTC	58.533	47.619	0.00	0.00	35.01	2.87
743	1113	2.100252	TCTCTCCGTGTTCGTTTGTTCT	59.900	45.455	0.00	0.00	35.01	3.01
748	1118	2.589798	TGTTCTCTCCGTGTTCGTTT	57.410	45.000	0.00	0.00	35.01	3.60
881	1251	8.048514	GCGGGGGTATTTATAGGTTAATTATGA	58.951	37.037	0.00	0.00	0.00	2.15
991	1396	2.280457	GGACGCCATGGCTAGCTC	60.280	66.667	33.07	20.47	39.32	4.09
1125	1547	2.568090	GCGTTGATGCCCAGGTTG	59.432	61.111	0.00	0.00	0.00	3.77
1586	2078	1.159713	ACGACTGACGACGGTACACA	61.160	55.000	6.52	0.00	45.77	3.72
1587	2079	0.723790	CACGACTGACGACGGTACAC	60.724	60.000	6.52	0.00	45.77	2.90
1844	2359	7.332557	CCCATGGAGATTTCATTTCATTTCAA	58.667	34.615	15.22	0.00	0.00	2.69
1845	2360	6.126997	CCCCATGGAGATTTCATTTCATTTCA	60.127	38.462	15.22	0.00	0.00	2.69
1846	2361	6.098695	TCCCCATGGAGATTTCATTTCATTTC	59.901	38.462	15.22	0.00	35.03	2.17
1847	2362	5.965705	TCCCCATGGAGATTTCATTTCATTT	59.034	36.000	15.22	0.00	35.03	2.32
1848	2363	5.531198	TCCCCATGGAGATTTCATTTCATT	58.469	37.500	15.22	0.00	35.03	2.57
1849	2364	5.146868	TCCCCATGGAGATTTCATTTCAT	57.853	39.130	15.22	0.00	35.03	2.57
1850	2365	4.606476	TCCCCATGGAGATTTCATTTCA	57.394	40.909	15.22	0.00	35.03	2.69
1851	2366	6.490241	AAATCCCCATGGAGATTTCATTTC	57.510	37.500	24.32	0.00	46.08	2.17
1857	2372	5.131475	CCAAATGAAATCCCCATGGAGATTT	59.869	40.000	28.57	28.57	46.08	2.17
1858	2373	4.657039	CCAAATGAAATCCCCATGGAGATT	59.343	41.667	15.35	15.35	46.08	2.40
1859	2374	4.228824	CCAAATGAAATCCCCATGGAGAT	58.771	43.478	15.22	8.48	46.08	2.75
1975	2530	5.911752	TGTGTTGGTTTATCAATTGTTGCT	58.088	33.333	5.13	0.00	0.00	3.91
2002	2557	8.885494	TTATGAAGTTCATTTTTGAAGTTGGG	57.115	30.769	22.90	0.00	40.38	4.12
2197	3100	2.101582	TGTGGAAACCGGGTCATTTTTG	59.898	45.455	6.32	0.00	0.00	2.44
2212	3115	7.719193	CCACCAATGTATTGTCTATATGTGGAA	59.281	37.037	15.68	0.00	39.93	3.53
2267	3170	9.392259	ACTCTTTTATATTTTCTTTACGGAGGG	57.608	33.333	0.00	0.00	0.00	4.30
2373	3298	1.533965	GGCTAGCATTTTTACCGCTGC	60.534	52.381	18.24	0.00	37.20	5.25
2411	3336	6.630444	TCAACAACTAGTCGTTTACTCTCT	57.370	37.500	0.00	0.00	39.80	3.10
2412	3337	6.129141	GCTTCAACAACTAGTCGTTTACTCTC	60.129	42.308	0.00	0.00	39.80	3.20
2413	3338	5.690857	GCTTCAACAACTAGTCGTTTACTCT	59.309	40.000	0.00	0.00	39.80	3.24
2454	3379	7.933396	TGACAATATTTGCTCATCAAGGTATG	58.067	34.615	0.00	0.00	35.84	2.39

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.