Multiple sequence alignment - TraesCS5D01G094100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G094100 chr5D 100.000 3817 0 0 1 3817 103634239 103638055 0.000000e+00 7049.0
1 TraesCS5D01G094100 chr5D 86.802 197 19 5 470 661 437985000 437985194 2.990000e-51 213.0
2 TraesCS5D01G094100 chr5D 87.218 133 15 2 336 468 211916310 211916180 2.380000e-32 150.0
3 TraesCS5D01G094100 chr5D 87.218 133 15 2 336 468 425892969 425893099 2.380000e-32 150.0
4 TraesCS5D01G094100 chr5D 80.000 210 30 10 473 672 425895834 425896041 1.110000e-30 145.0
5 TraesCS5D01G094100 chr5D 85.135 74 6 5 1574 1644 425721496 425721425 1.900000e-08 71.3
6 TraesCS5D01G094100 chr5A 94.788 3070 115 16 1 3037 94747522 94744465 0.000000e+00 4741.0
7 TraesCS5D01G094100 chr5A 95.431 197 9 0 3359 3555 94744470 94744274 7.960000e-82 315.0
8 TraesCS5D01G094100 chr5A 92.568 148 9 1 3669 3814 94744262 94744115 1.070000e-50 211.0
9 TraesCS5D01G094100 chr5A 87.500 72 7 2 1574 1644 539960845 539960775 8.790000e-12 82.4
10 TraesCS5D01G094100 chr5A 90.323 62 4 2 1574 1634 419038605 419038545 3.160000e-11 80.5
11 TraesCS5D01G094100 chr4B 91.217 1742 106 22 41 1750 575780826 575779100 0.000000e+00 2326.0
12 TraesCS5D01G094100 chr4B 91.481 270 19 3 2616 2881 575778025 575777756 6.020000e-98 368.0
13 TraesCS5D01G094100 chr4B 84.986 353 35 6 1971 2310 575778667 575778320 3.650000e-90 342.0
14 TraesCS5D01G094100 chr4B 92.121 165 12 1 2418 2582 549841919 549841756 8.250000e-57 231.0
15 TraesCS5D01G094100 chr4B 89.503 181 13 6 2422 2599 406389457 406389280 1.380000e-54 224.0
16 TraesCS5D01G094100 chr5B 93.217 1430 71 13 1 1413 112573493 112574913 0.000000e+00 2080.0
17 TraesCS5D01G094100 chr5B 91.206 398 19 2 1469 1850 112574914 112575311 9.390000e-146 527.0
18 TraesCS5D01G094100 chr5B 92.121 165 12 1 2422 2585 316709146 316708982 8.250000e-57 231.0
19 TraesCS5D01G094100 chr5B 87.970 133 14 2 336 468 81578397 81578267 5.110000e-34 156.0
20 TraesCS5D01G094100 chr5B 87.218 133 15 2 336 468 532564863 532564733 2.380000e-32 150.0
21 TraesCS5D01G094100 chr5B 100.000 32 0 0 1590 1621 691164646 691164615 4.120000e-05 60.2
22 TraesCS5D01G094100 chr5B 100.000 32 0 0 1590 1621 691514982 691514951 4.120000e-05 60.2
23 TraesCS5D01G094100 chr5B 92.500 40 0 2 1574 1613 267756852 267756816 2.000000e-03 54.7
24 TraesCS5D01G094100 chr7B 92.727 165 11 1 2418 2582 155483857 155483694 1.770000e-58 237.0
25 TraesCS5D01G094100 chr4A 91.908 173 9 4 2422 2589 101750478 101750306 1.770000e-58 237.0
26 TraesCS5D01G094100 chr4A 90.991 111 10 0 358 468 174619001 174618891 2.380000e-32 150.0
27 TraesCS5D01G094100 chr6B 87.685 203 22 2 473 672 494281892 494282094 2.290000e-57 233.0
28 TraesCS5D01G094100 chr3D 92.638 163 9 3 2422 2582 87926000 87926161 8.250000e-57 231.0
29 TraesCS5D01G094100 chr3D 90.816 98 8 1 3552 3648 612889624 612889721 3.090000e-26 130.0
30 TraesCS5D01G094100 chr3D 90.426 94 7 2 3551 3643 74446901 74446993 5.180000e-24 122.0
31 TraesCS5D01G094100 chr4D 91.228 171 12 3 2416 2584 421331239 421331070 2.970000e-56 230.0
32 TraesCS5D01G094100 chr4D 75.380 329 59 16 344 652 13102317 13101991 5.140000e-29 139.0
33 TraesCS5D01G094100 chr4D 89.583 96 9 1 3556 3651 379147199 379147293 1.860000e-23 121.0
34 TraesCS5D01G094100 chrUn 91.515 165 13 1 2418 2582 86671480 86671317 3.840000e-55 226.0
35 TraesCS5D01G094100 chrUn 90.741 54 4 1 1575 1627 277316232 277316179 1.900000e-08 71.3
36 TraesCS5D01G094100 chrUn 88.889 54 5 1 1575 1627 277316332 277316279 8.850000e-07 65.8
37 TraesCS5D01G094100 chr3B 84.722 216 18 7 471 672 815222049 815221835 6.470000e-48 202.0
38 TraesCS5D01G094100 chr3B 90.991 111 10 0 358 468 43922259 43922369 2.380000e-32 150.0
39 TraesCS5D01G094100 chr3B 87.218 133 15 2 336 468 727940177 727940047 2.380000e-32 150.0
40 TraesCS5D01G094100 chr3B 87.209 86 9 2 1574 1658 782841700 782841616 3.140000e-16 97.1
41 TraesCS5D01G094100 chr7D 85.000 200 26 2 471 668 167405607 167405410 2.330000e-47 200.0
42 TraesCS5D01G094100 chr7D 90.526 95 8 1 3551 3644 540570423 540570517 1.440000e-24 124.0
43 TraesCS5D01G094100 chr7D 89.109 101 8 3 3542 3641 632404689 632404591 5.180000e-24 122.0
44 TraesCS5D01G094100 chr7D 93.478 46 1 2 1574 1618 519965953 519965909 2.460000e-07 67.6
45 TraesCS5D01G094100 chr7D 89.362 47 2 2 1574 1620 106075136 106075179 5.330000e-04 56.5
46 TraesCS5D01G094100 chr2D 92.308 91 6 1 3552 3641 643235824 643235914 1.110000e-25 128.0
47 TraesCS5D01G094100 chr2D 91.398 93 7 1 3552 3643 117843040 117843132 4.000000e-25 126.0
48 TraesCS5D01G094100 chr2D 92.222 90 6 1 3556 3644 359396457 359396546 4.000000e-25 126.0
49 TraesCS5D01G094100 chr2D 92.593 54 3 1 1575 1627 282927628 282927681 4.090000e-10 76.8
50 TraesCS5D01G094100 chr2D 90.741 54 4 1 1575 1627 282927528 282927581 1.900000e-08 71.3
51 TraesCS5D01G094100 chr1D 90.526 95 8 1 3551 3644 469154002 469153908 1.440000e-24 124.0
52 TraesCS5D01G094100 chr1A 91.667 72 4 2 1585 1655 36563561 36563491 8.730000e-17 99.0
53 TraesCS5D01G094100 chr1A 93.443 61 2 2 1585 1644 234813505 234813564 5.250000e-14 89.8
54 TraesCS5D01G094100 chr1B 94.737 57 3 0 1585 1641 223137635 223137579 5.250000e-14 89.8
55 TraesCS5D01G094100 chr1B 97.778 45 1 0 1585 1629 56997470 56997426 1.140000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G094100 chr5D 103634239 103638055 3816 False 7049.000000 7049 100.000000 1 3817 1 chr5D.!!$F1 3816
1 TraesCS5D01G094100 chr5A 94744115 94747522 3407 True 1755.666667 4741 94.262333 1 3814 3 chr5A.!!$R3 3813
2 TraesCS5D01G094100 chr4B 575777756 575780826 3070 True 1012.000000 2326 89.228000 41 2881 3 chr4B.!!$R3 2840
3 TraesCS5D01G094100 chr5B 112573493 112575311 1818 False 1303.500000 2080 92.211500 1 1850 2 chr5B.!!$F1 1849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 924 0.981943 AACTTAACTACCGGCTGCCT 59.018 50.0 17.92 0.7 0.00 4.75 F
2104 2371 0.603569 CCAACCGGCGATAGATAGCT 59.396 55.0 9.30 0.0 39.76 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2396 2827 0.106116 TAACCCCTTTTGCGGTGGTT 60.106 50.0 0.0 0.0 39.42 3.67 R
3086 3525 0.033504 GACCAGTGCAGAAACTCGGA 59.966 55.0 0.0 0.0 0.00 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.010138 CAGGGGACAGGGTAATTTTCTCA 59.990 47.826 0.00 0.00 0.00 3.27
63 64 3.010250 AGGGGACAGGGTAATTTTCTCAC 59.990 47.826 0.00 0.00 0.00 3.51
104 105 2.791560 CTGTCGGCTATGAGACAATTCG 59.208 50.000 0.00 0.00 45.36 3.34
168 169 3.713826 TGAACCAACTATTCCCCTGAC 57.286 47.619 0.00 0.00 0.00 3.51
196 197 3.390135 TGTAGCAGAAACTCGAACCAAG 58.610 45.455 0.00 0.00 0.00 3.61
351 362 9.698309 CCAACTGTGCCTATATGCTATATATAC 57.302 37.037 1.58 0.00 0.00 1.47
469 480 1.975680 GTCTACACCTGGGGTTTCAGA 59.024 52.381 7.03 0.44 36.93 3.27
484 510 8.221944 TGGGGTTTCAGAGTTTTATCTCTTTTA 58.778 33.333 0.00 0.00 42.10 1.52
746 784 3.865929 AACAGGCACTCGAGCACGG 62.866 63.158 13.61 6.28 34.60 4.94
776 814 1.336795 CCACACACTGTCATACGCTCA 60.337 52.381 0.00 0.00 0.00 4.26
886 924 0.981943 AACTTAACTACCGGCTGCCT 59.018 50.000 17.92 0.70 0.00 4.75
945 983 3.328931 TCACTCTTCTCTTGGCCTGATTT 59.671 43.478 3.32 0.00 0.00 2.17
1047 1085 6.699642 GGTAATCCTTCTCTCTTTCATTCGAG 59.300 42.308 0.00 0.00 0.00 4.04
1110 1148 5.856126 TTTACGAGGTTGATGTGATGTTC 57.144 39.130 0.00 0.00 0.00 3.18
1121 1159 2.355115 GATGTTCCAGGGGCGGTT 59.645 61.111 0.00 0.00 0.00 4.44
1246 1284 6.220930 ACTGCTTATCGTACTTTCAGTTTGA 58.779 36.000 0.00 0.00 30.08 2.69
1336 1375 3.230134 TCTTGGGTGAAGTCCAATTTGG 58.770 45.455 9.28 9.28 42.63 3.28
1747 1787 4.264397 TGGTGGAGATGGAGACTCTTAAGA 60.264 45.833 4.81 4.81 35.10 2.10
1907 2076 5.276678 CGTATTCCACTGTAAATGCCTAACG 60.277 44.000 0.00 0.00 0.00 3.18
1924 2094 2.690778 CGCAGCCTAAACCAGCCAC 61.691 63.158 0.00 0.00 0.00 5.01
1926 2096 2.040544 CAGCCTAAACCAGCCACGG 61.041 63.158 0.00 0.00 0.00 4.94
1938 2108 0.907704 AGCCACGGTATCTGGAACCA 60.908 55.000 0.00 0.00 36.78 3.67
1993 2247 1.541670 GGAGCCAAACCGTTGACACTA 60.542 52.381 0.00 0.00 36.83 2.74
2007 2269 6.378582 CGTTGACACTAAAGCCATAATTTGT 58.621 36.000 0.00 0.00 0.00 2.83
2010 2272 7.517614 TGACACTAAAGCCATAATTTGTTGA 57.482 32.000 0.00 0.00 0.00 3.18
2046 2308 2.733956 AGGAGGTTTGCAGTGTTTTGA 58.266 42.857 0.00 0.00 0.00 2.69
2099 2366 0.899720 AAAGTCCAACCGGCGATAGA 59.100 50.000 9.30 0.00 39.76 1.98
2102 2369 1.887198 AGTCCAACCGGCGATAGATAG 59.113 52.381 9.30 0.00 39.76 2.08
2104 2371 0.603569 CCAACCGGCGATAGATAGCT 59.396 55.000 9.30 0.00 39.76 3.32
2105 2372 1.816835 CCAACCGGCGATAGATAGCTA 59.183 52.381 9.30 0.00 39.76 3.32
2106 2373 2.427453 CCAACCGGCGATAGATAGCTAT 59.573 50.000 9.30 5.76 40.00 2.97
2107 2374 3.489398 CCAACCGGCGATAGATAGCTATC 60.489 52.174 23.74 23.74 46.22 2.08
2142 2409 8.143835 AGAGTCAAAAATCCAACCAATTGTTAG 58.856 33.333 4.43 0.00 34.69 2.34
2156 2423 6.438425 ACCAATTGTTAGATTCCTGCTCATTT 59.562 34.615 4.43 0.00 0.00 2.32
2157 2424 7.038799 ACCAATTGTTAGATTCCTGCTCATTTT 60.039 33.333 4.43 0.00 0.00 1.82
2217 2484 2.987149 ACACGCTGATTCAACTACTTCG 59.013 45.455 0.00 0.00 0.00 3.79
2226 2493 6.464222 TGATTCAACTACTTCGTGGAAGAAT 58.536 36.000 12.00 2.51 41.71 2.40
2344 2775 2.864343 CTGAAACCTTTCTCAACGACGT 59.136 45.455 0.00 0.00 38.02 4.34
2388 2819 7.883311 GCTAATGTTTTGGAAGGGCTATATAGA 59.117 37.037 14.16 0.00 0.00 1.98
2396 2827 8.736097 TTGGAAGGGCTATATAGATTACTTCA 57.264 34.615 22.92 14.12 35.90 3.02
2496 2927 7.214467 ACATACGGAACAAAATGAGTGAATT 57.786 32.000 0.00 0.00 0.00 2.17
2530 2961 8.738199 AAAATACGTCTATATACATCCGTGTG 57.262 34.615 0.00 0.00 39.39 3.82
2546 2977 6.715344 TCCGTGTGTAGTTCATATTGAAAC 57.285 37.500 0.00 0.00 38.22 2.78
2549 2980 6.814644 CCGTGTGTAGTTCATATTGAAACCTA 59.185 38.462 0.00 0.00 38.22 3.08
2557 2989 8.465273 AGTTCATATTGAAACCTATAAAGGGC 57.535 34.615 0.00 0.00 38.14 5.19
2658 3093 3.944650 TGCATGCTTTGTCGGTGTAATAT 59.055 39.130 20.33 0.00 0.00 1.28
2674 3112 9.436957 CGGTGTAATATCCTTAATTAGCTTCAT 57.563 33.333 0.00 0.00 0.00 2.57
2816 3254 2.234613 CACACTGCACGGTGGTTAG 58.765 57.895 13.87 0.00 41.09 2.34
2818 3256 1.042229 ACACTGCACGGTGGTTAGTA 58.958 50.000 13.87 0.00 41.09 1.82
2824 3263 4.873827 ACTGCACGGTGGTTAGTATTATTG 59.126 41.667 10.60 0.00 0.00 1.90
2859 3298 1.105167 ATGGCATTGCGATCTGTGGG 61.105 55.000 1.91 0.00 0.00 4.61
2892 3331 9.981114 ACTAAATGCACTGTAATTTTTAAAGCT 57.019 25.926 0.00 0.00 0.00 3.74
3010 3449 4.647424 TTGTGATGGTTTTGGAACAGTC 57.353 40.909 0.00 0.00 42.39 3.51
3031 3470 5.542635 AGTCAAGGTACCTGAAGATGTGTAA 59.457 40.000 17.14 0.00 0.00 2.41
3032 3471 6.042781 AGTCAAGGTACCTGAAGATGTGTAAA 59.957 38.462 17.14 0.00 0.00 2.01
3033 3472 6.708949 GTCAAGGTACCTGAAGATGTGTAAAA 59.291 38.462 17.14 0.00 0.00 1.52
3034 3473 7.227910 GTCAAGGTACCTGAAGATGTGTAAAAA 59.772 37.037 17.14 0.00 0.00 1.94
3063 3502 6.003234 TCTCATTTGATCGTAGCTACTAGC 57.997 41.667 21.20 14.04 42.84 3.42
3064 3503 5.531287 TCTCATTTGATCGTAGCTACTAGCA 59.469 40.000 21.20 16.54 45.56 3.49
3065 3504 6.207614 TCTCATTTGATCGTAGCTACTAGCAT 59.792 38.462 21.20 8.04 45.56 3.79
3066 3505 6.749139 TCATTTGATCGTAGCTACTAGCATT 58.251 36.000 21.20 7.84 45.56 3.56
3067 3506 6.642540 TCATTTGATCGTAGCTACTAGCATTG 59.357 38.462 21.20 17.63 45.56 2.82
3068 3507 3.902150 TGATCGTAGCTACTAGCATTGC 58.098 45.455 21.20 0.00 45.56 3.56
3069 3508 2.401017 TCGTAGCTACTAGCATTGCG 57.599 50.000 21.20 5.36 45.56 4.85
3070 3509 1.674441 TCGTAGCTACTAGCATTGCGT 59.326 47.619 21.20 0.00 45.56 5.24
3071 3510 1.781429 CGTAGCTACTAGCATTGCGTG 59.219 52.381 21.20 2.80 45.56 5.34
3072 3511 2.540973 CGTAGCTACTAGCATTGCGTGA 60.541 50.000 21.20 0.00 45.56 4.35
3073 3512 2.215907 AGCTACTAGCATTGCGTGAG 57.784 50.000 10.73 4.98 45.56 3.51
3092 3531 2.317530 GCTAAAGGCTGAATCCGAGT 57.682 50.000 0.00 0.00 38.06 4.18
3093 3532 2.633488 GCTAAAGGCTGAATCCGAGTT 58.367 47.619 0.00 0.00 38.06 3.01
3094 3533 3.010420 GCTAAAGGCTGAATCCGAGTTT 58.990 45.455 0.00 0.00 38.06 2.66
3095 3534 3.064134 GCTAAAGGCTGAATCCGAGTTTC 59.936 47.826 0.00 0.00 38.06 2.78
3096 3535 3.425162 AAAGGCTGAATCCGAGTTTCT 57.575 42.857 0.00 0.00 0.00 2.52
3097 3536 2.393271 AGGCTGAATCCGAGTTTCTG 57.607 50.000 0.00 0.00 0.00 3.02
3098 3537 0.729690 GGCTGAATCCGAGTTTCTGC 59.270 55.000 12.18 12.18 43.34 4.26
3099 3538 1.442769 GCTGAATCCGAGTTTCTGCA 58.557 50.000 14.30 0.00 43.46 4.41
3100 3539 1.129437 GCTGAATCCGAGTTTCTGCAC 59.871 52.381 14.30 0.00 43.46 4.57
3101 3540 2.693069 CTGAATCCGAGTTTCTGCACT 58.307 47.619 0.00 0.00 0.00 4.40
3102 3541 2.414481 CTGAATCCGAGTTTCTGCACTG 59.586 50.000 0.00 0.00 0.00 3.66
3103 3542 1.734465 GAATCCGAGTTTCTGCACTGG 59.266 52.381 0.00 0.00 0.00 4.00
3104 3543 0.687354 ATCCGAGTTTCTGCACTGGT 59.313 50.000 0.00 0.00 0.00 4.00
3105 3544 0.033504 TCCGAGTTTCTGCACTGGTC 59.966 55.000 0.00 0.00 0.00 4.02
3106 3545 0.034059 CCGAGTTTCTGCACTGGTCT 59.966 55.000 0.00 0.00 0.00 3.85
3107 3546 1.541233 CCGAGTTTCTGCACTGGTCTT 60.541 52.381 0.00 0.00 0.00 3.01
3108 3547 1.795286 CGAGTTTCTGCACTGGTCTTC 59.205 52.381 0.00 0.00 0.00 2.87
3109 3548 2.546795 CGAGTTTCTGCACTGGTCTTCT 60.547 50.000 0.00 0.00 0.00 2.85
3110 3549 3.471680 GAGTTTCTGCACTGGTCTTCTT 58.528 45.455 0.00 0.00 0.00 2.52
3111 3550 3.879892 GAGTTTCTGCACTGGTCTTCTTT 59.120 43.478 0.00 0.00 0.00 2.52
3112 3551 3.629398 AGTTTCTGCACTGGTCTTCTTTG 59.371 43.478 0.00 0.00 0.00 2.77
3113 3552 2.260844 TCTGCACTGGTCTTCTTTGG 57.739 50.000 0.00 0.00 0.00 3.28
3114 3553 1.202806 TCTGCACTGGTCTTCTTTGGG 60.203 52.381 0.00 0.00 0.00 4.12
3115 3554 0.550914 TGCACTGGTCTTCTTTGGGT 59.449 50.000 0.00 0.00 0.00 4.51
3116 3555 1.064017 TGCACTGGTCTTCTTTGGGTT 60.064 47.619 0.00 0.00 0.00 4.11
3117 3556 1.609072 GCACTGGTCTTCTTTGGGTTC 59.391 52.381 0.00 0.00 0.00 3.62
3118 3557 2.930950 CACTGGTCTTCTTTGGGTTCA 58.069 47.619 0.00 0.00 0.00 3.18
3119 3558 2.618709 CACTGGTCTTCTTTGGGTTCAC 59.381 50.000 0.00 0.00 0.00 3.18
3120 3559 2.241176 ACTGGTCTTCTTTGGGTTCACA 59.759 45.455 0.00 0.00 0.00 3.58
3121 3560 2.618709 CTGGTCTTCTTTGGGTTCACAC 59.381 50.000 0.00 0.00 0.00 3.82
3122 3561 2.241176 TGGTCTTCTTTGGGTTCACACT 59.759 45.455 0.00 0.00 0.00 3.55
3123 3562 3.288092 GGTCTTCTTTGGGTTCACACTT 58.712 45.455 0.00 0.00 0.00 3.16
3124 3563 3.315470 GGTCTTCTTTGGGTTCACACTTC 59.685 47.826 0.00 0.00 0.00 3.01
3125 3564 3.315470 GTCTTCTTTGGGTTCACACTTCC 59.685 47.826 0.00 0.00 0.00 3.46
3126 3565 1.961793 TCTTTGGGTTCACACTTCCG 58.038 50.000 0.00 0.00 0.00 4.30
3127 3566 1.210967 TCTTTGGGTTCACACTTCCGT 59.789 47.619 0.00 0.00 0.00 4.69
3128 3567 1.602377 CTTTGGGTTCACACTTCCGTC 59.398 52.381 0.00 0.00 0.00 4.79
3129 3568 0.542333 TTGGGTTCACACTTCCGTCA 59.458 50.000 0.00 0.00 0.00 4.35
3130 3569 0.542333 TGGGTTCACACTTCCGTCAA 59.458 50.000 0.00 0.00 0.00 3.18
3131 3570 1.142060 TGGGTTCACACTTCCGTCAAT 59.858 47.619 0.00 0.00 0.00 2.57
3132 3571 2.227194 GGGTTCACACTTCCGTCAATT 58.773 47.619 0.00 0.00 0.00 2.32
3133 3572 2.621526 GGGTTCACACTTCCGTCAATTT 59.378 45.455 0.00 0.00 0.00 1.82
3134 3573 3.304458 GGGTTCACACTTCCGTCAATTTC 60.304 47.826 0.00 0.00 0.00 2.17
3135 3574 3.304458 GGTTCACACTTCCGTCAATTTCC 60.304 47.826 0.00 0.00 0.00 3.13
3136 3575 3.201353 TCACACTTCCGTCAATTTCCA 57.799 42.857 0.00 0.00 0.00 3.53
3137 3576 3.750371 TCACACTTCCGTCAATTTCCAT 58.250 40.909 0.00 0.00 0.00 3.41
3138 3577 3.751175 TCACACTTCCGTCAATTTCCATC 59.249 43.478 0.00 0.00 0.00 3.51
3139 3578 3.501828 CACACTTCCGTCAATTTCCATCA 59.498 43.478 0.00 0.00 0.00 3.07
3140 3579 4.023279 CACACTTCCGTCAATTTCCATCAA 60.023 41.667 0.00 0.00 0.00 2.57
3141 3580 4.023193 ACACTTCCGTCAATTTCCATCAAC 60.023 41.667 0.00 0.00 0.00 3.18
3142 3581 3.506067 ACTTCCGTCAATTTCCATCAACC 59.494 43.478 0.00 0.00 0.00 3.77
3143 3582 3.433306 TCCGTCAATTTCCATCAACCT 57.567 42.857 0.00 0.00 0.00 3.50
3144 3583 3.761897 TCCGTCAATTTCCATCAACCTT 58.238 40.909 0.00 0.00 0.00 3.50
3145 3584 3.505680 TCCGTCAATTTCCATCAACCTTG 59.494 43.478 0.00 0.00 0.00 3.61
3146 3585 3.505680 CCGTCAATTTCCATCAACCTTGA 59.494 43.478 0.00 0.00 42.14 3.02
3147 3586 4.022416 CCGTCAATTTCCATCAACCTTGAA 60.022 41.667 0.00 0.00 41.13 2.69
3148 3587 5.336690 CCGTCAATTTCCATCAACCTTGAAT 60.337 40.000 0.00 0.00 41.13 2.57
3149 3588 5.574055 CGTCAATTTCCATCAACCTTGAATG 59.426 40.000 0.00 0.00 41.13 2.67
3150 3589 6.458210 GTCAATTTCCATCAACCTTGAATGT 58.542 36.000 0.00 0.00 41.13 2.71
3151 3590 7.574779 CGTCAATTTCCATCAACCTTGAATGTA 60.575 37.037 0.00 0.00 41.13 2.29
3152 3591 8.253113 GTCAATTTCCATCAACCTTGAATGTAT 58.747 33.333 0.00 0.00 41.13 2.29
3153 3592 8.814931 TCAATTTCCATCAACCTTGAATGTATT 58.185 29.630 0.00 0.00 41.13 1.89
3157 3596 9.699410 TTTCCATCAACCTTGAATGTATTATCT 57.301 29.630 0.00 0.00 41.13 1.98
3158 3597 8.908786 TCCATCAACCTTGAATGTATTATCTC 57.091 34.615 0.00 0.00 41.13 2.75
3159 3598 8.717717 TCCATCAACCTTGAATGTATTATCTCT 58.282 33.333 0.00 0.00 41.13 3.10
3160 3599 9.347240 CCATCAACCTTGAATGTATTATCTCTT 57.653 33.333 0.00 0.00 41.13 2.85
3163 3602 9.958180 TCAACCTTGAATGTATTATCTCTTCAA 57.042 29.630 0.00 0.00 35.29 2.69
3189 3628 9.988815 AATTTATTACAGTTTATGTTGCCAACA 57.011 25.926 13.44 13.44 46.94 3.33
3190 3629 8.804688 TTTATTACAGTTTATGTTGCCAACAC 57.195 30.769 13.33 0.00 45.50 3.32
3191 3630 3.347958 ACAGTTTATGTTGCCAACACG 57.652 42.857 13.33 0.38 45.50 4.49
3192 3631 2.034053 ACAGTTTATGTTGCCAACACGG 59.966 45.455 13.33 3.57 45.50 4.94
3202 3641 3.299050 CCAACACGGCAGTAAGTGA 57.701 52.632 2.42 0.00 40.56 3.41
3203 3642 1.808411 CCAACACGGCAGTAAGTGAT 58.192 50.000 2.42 0.00 40.56 3.06
3204 3643 1.464608 CCAACACGGCAGTAAGTGATG 59.535 52.381 2.42 1.06 40.56 3.07
3205 3644 2.412870 CAACACGGCAGTAAGTGATGA 58.587 47.619 2.42 0.00 41.63 2.92
3206 3645 2.370281 ACACGGCAGTAAGTGATGAG 57.630 50.000 2.42 0.00 40.56 2.90
3207 3646 1.002366 CACGGCAGTAAGTGATGAGC 58.998 55.000 0.00 0.00 40.56 4.26
3208 3647 0.898320 ACGGCAGTAAGTGATGAGCT 59.102 50.000 0.00 0.00 0.00 4.09
3209 3648 1.276421 ACGGCAGTAAGTGATGAGCTT 59.724 47.619 0.00 0.00 0.00 3.74
3210 3649 1.929836 CGGCAGTAAGTGATGAGCTTC 59.070 52.381 0.00 0.00 0.00 3.86
3211 3650 2.675032 CGGCAGTAAGTGATGAGCTTCA 60.675 50.000 0.00 0.00 0.00 3.02
3212 3651 3.539604 GGCAGTAAGTGATGAGCTTCAT 58.460 45.455 0.00 0.00 40.34 2.57
3213 3652 4.697514 GGCAGTAAGTGATGAGCTTCATA 58.302 43.478 0.00 0.00 37.20 2.15
3214 3653 5.118990 GGCAGTAAGTGATGAGCTTCATAA 58.881 41.667 0.00 0.00 37.20 1.90
3215 3654 5.007136 GGCAGTAAGTGATGAGCTTCATAAC 59.993 44.000 5.82 5.82 38.31 1.89
3216 3655 5.007136 GCAGTAAGTGATGAGCTTCATAACC 59.993 44.000 9.00 0.00 38.72 2.85
3217 3656 6.108687 CAGTAAGTGATGAGCTTCATAACCA 58.891 40.000 9.00 0.00 38.72 3.67
3218 3657 6.595326 CAGTAAGTGATGAGCTTCATAACCAA 59.405 38.462 9.00 0.00 38.72 3.67
3219 3658 5.886960 AAGTGATGAGCTTCATAACCAAC 57.113 39.130 9.00 0.00 38.72 3.77
3220 3659 4.910195 AGTGATGAGCTTCATAACCAACA 58.090 39.130 9.00 0.00 38.72 3.33
3221 3660 4.697352 AGTGATGAGCTTCATAACCAACAC 59.303 41.667 9.00 6.02 38.72 3.32
3222 3661 3.684305 TGATGAGCTTCATAACCAACACG 59.316 43.478 0.00 0.00 37.20 4.49
3223 3662 2.422597 TGAGCTTCATAACCAACACGG 58.577 47.619 0.00 0.00 42.50 4.94
3224 3663 1.130561 GAGCTTCATAACCAACACGGC 59.869 52.381 0.00 0.00 39.03 5.68
3225 3664 0.878416 GCTTCATAACCAACACGGCA 59.122 50.000 0.00 0.00 39.03 5.69
3226 3665 1.135689 GCTTCATAACCAACACGGCAG 60.136 52.381 0.00 0.00 39.03 4.85
3227 3666 2.422597 CTTCATAACCAACACGGCAGA 58.577 47.619 0.00 0.00 39.03 4.26
3228 3667 2.552599 TCATAACCAACACGGCAGAA 57.447 45.000 0.00 0.00 39.03 3.02
3229 3668 2.852449 TCATAACCAACACGGCAGAAA 58.148 42.857 0.00 0.00 39.03 2.52
3230 3669 2.811431 TCATAACCAACACGGCAGAAAG 59.189 45.455 0.00 0.00 39.03 2.62
3231 3670 1.600023 TAACCAACACGGCAGAAAGG 58.400 50.000 0.00 0.00 39.03 3.11
3232 3671 0.106918 AACCAACACGGCAGAAAGGA 60.107 50.000 0.00 0.00 39.03 3.36
3233 3672 0.106918 ACCAACACGGCAGAAAGGAA 60.107 50.000 0.00 0.00 39.03 3.36
3234 3673 1.028905 CCAACACGGCAGAAAGGAAA 58.971 50.000 0.00 0.00 0.00 3.13
3235 3674 1.001378 CCAACACGGCAGAAAGGAAAG 60.001 52.381 0.00 0.00 0.00 2.62
3236 3675 1.946768 CAACACGGCAGAAAGGAAAGA 59.053 47.619 0.00 0.00 0.00 2.52
3237 3676 2.554032 CAACACGGCAGAAAGGAAAGAT 59.446 45.455 0.00 0.00 0.00 2.40
3238 3677 2.154462 ACACGGCAGAAAGGAAAGATG 58.846 47.619 0.00 0.00 0.00 2.90
3239 3678 1.135575 CACGGCAGAAAGGAAAGATGC 60.136 52.381 0.00 0.00 36.16 3.91
3240 3679 1.271597 ACGGCAGAAAGGAAAGATGCT 60.272 47.619 0.00 0.00 37.08 3.79
3241 3680 1.131883 CGGCAGAAAGGAAAGATGCTG 59.868 52.381 0.00 0.00 37.08 4.41
3242 3681 2.165998 GGCAGAAAGGAAAGATGCTGT 58.834 47.619 0.00 0.00 37.08 4.40
3243 3682 2.163211 GGCAGAAAGGAAAGATGCTGTC 59.837 50.000 0.00 0.00 37.08 3.51
3244 3683 2.816087 GCAGAAAGGAAAGATGCTGTCA 59.184 45.455 0.00 0.00 33.83 3.58
3245 3684 3.254166 GCAGAAAGGAAAGATGCTGTCAA 59.746 43.478 0.00 0.00 33.83 3.18
3246 3685 4.615452 GCAGAAAGGAAAGATGCTGTCAAG 60.615 45.833 0.00 0.00 33.83 3.02
3247 3686 4.077822 AGAAAGGAAAGATGCTGTCAAGG 58.922 43.478 0.00 0.00 33.83 3.61
3248 3687 3.795688 AAGGAAAGATGCTGTCAAGGA 57.204 42.857 0.00 0.00 0.00 3.36
3249 3688 3.347077 AGGAAAGATGCTGTCAAGGAG 57.653 47.619 0.00 0.00 0.00 3.69
3250 3689 2.026449 AGGAAAGATGCTGTCAAGGAGG 60.026 50.000 0.00 0.00 0.00 4.30
3251 3690 2.026822 GGAAAGATGCTGTCAAGGAGGA 60.027 50.000 0.00 0.00 0.00 3.71
3252 3691 3.269178 GAAAGATGCTGTCAAGGAGGAG 58.731 50.000 0.00 0.00 0.00 3.69
3253 3692 2.244486 AGATGCTGTCAAGGAGGAGA 57.756 50.000 0.00 0.00 0.00 3.71
3254 3693 2.544721 AGATGCTGTCAAGGAGGAGAA 58.455 47.619 0.00 0.00 0.00 2.87
3255 3694 2.235898 AGATGCTGTCAAGGAGGAGAAC 59.764 50.000 0.00 0.00 0.00 3.01
3256 3695 0.687354 TGCTGTCAAGGAGGAGAACC 59.313 55.000 0.00 0.00 0.00 3.62
3257 3696 0.687354 GCTGTCAAGGAGGAGAACCA 59.313 55.000 0.00 0.00 38.94 3.67
3258 3697 1.609320 GCTGTCAAGGAGGAGAACCAC 60.609 57.143 0.00 0.00 38.94 4.16
3259 3698 1.974236 CTGTCAAGGAGGAGAACCACT 59.026 52.381 0.00 0.00 38.94 4.00
3260 3699 2.370189 CTGTCAAGGAGGAGAACCACTT 59.630 50.000 0.00 0.00 38.94 3.16
3261 3700 3.578716 CTGTCAAGGAGGAGAACCACTTA 59.421 47.826 0.00 0.00 38.94 2.24
3262 3701 3.323979 TGTCAAGGAGGAGAACCACTTAC 59.676 47.826 0.00 0.00 38.94 2.34
3263 3702 3.579151 GTCAAGGAGGAGAACCACTTACT 59.421 47.826 0.00 0.00 38.94 2.24
3264 3703 3.578716 TCAAGGAGGAGAACCACTTACTG 59.421 47.826 0.00 0.00 38.94 2.74
3265 3704 3.261818 AGGAGGAGAACCACTTACTGT 57.738 47.619 0.00 0.00 38.94 3.55
3266 3705 2.900546 AGGAGGAGAACCACTTACTGTG 59.099 50.000 0.00 0.00 45.80 3.66
3281 3720 7.426929 ACTTACTGTGAAAAGACATGCTAAG 57.573 36.000 0.00 0.00 0.00 2.18
3282 3721 6.992715 ACTTACTGTGAAAAGACATGCTAAGT 59.007 34.615 0.00 0.00 0.00 2.24
3283 3722 5.679734 ACTGTGAAAAGACATGCTAAGTG 57.320 39.130 0.00 0.00 0.00 3.16
3284 3723 4.023707 ACTGTGAAAAGACATGCTAAGTGC 60.024 41.667 0.00 0.00 43.25 4.40
3296 3735 3.813529 GCTAAGTGCACAGTAAGTTGG 57.186 47.619 21.04 6.44 42.31 3.77
3297 3736 2.484264 GCTAAGTGCACAGTAAGTTGGG 59.516 50.000 21.04 2.70 42.31 4.12
3298 3737 3.805807 GCTAAGTGCACAGTAAGTTGGGA 60.806 47.826 21.04 0.00 42.31 4.37
3299 3738 3.508845 AAGTGCACAGTAAGTTGGGAT 57.491 42.857 21.04 0.00 0.00 3.85
3300 3739 3.508845 AGTGCACAGTAAGTTGGGATT 57.491 42.857 21.04 0.00 0.00 3.01
3301 3740 3.832527 AGTGCACAGTAAGTTGGGATTT 58.167 40.909 21.04 0.00 0.00 2.17
3302 3741 3.569701 AGTGCACAGTAAGTTGGGATTTG 59.430 43.478 21.04 0.00 0.00 2.32
3303 3742 3.317993 GTGCACAGTAAGTTGGGATTTGT 59.682 43.478 13.17 0.00 0.00 2.83
3304 3743 3.957497 TGCACAGTAAGTTGGGATTTGTT 59.043 39.130 0.00 0.00 0.00 2.83
3305 3744 4.037446 TGCACAGTAAGTTGGGATTTGTTC 59.963 41.667 0.00 0.00 0.00 3.18
3306 3745 4.278419 GCACAGTAAGTTGGGATTTGTTCT 59.722 41.667 0.00 0.00 0.00 3.01
3307 3746 5.562890 GCACAGTAAGTTGGGATTTGTTCTC 60.563 44.000 0.00 0.00 0.00 2.87
3308 3747 5.765182 CACAGTAAGTTGGGATTTGTTCTCT 59.235 40.000 0.00 0.00 0.00 3.10
3309 3748 5.998363 ACAGTAAGTTGGGATTTGTTCTCTC 59.002 40.000 0.00 0.00 0.00 3.20
3310 3749 6.183361 ACAGTAAGTTGGGATTTGTTCTCTCT 60.183 38.462 0.00 0.00 0.00 3.10
3311 3750 6.148480 CAGTAAGTTGGGATTTGTTCTCTCTG 59.852 42.308 0.00 0.00 0.00 3.35
3312 3751 4.713792 AGTTGGGATTTGTTCTCTCTGT 57.286 40.909 0.00 0.00 0.00 3.41
3313 3752 4.392940 AGTTGGGATTTGTTCTCTCTGTG 58.607 43.478 0.00 0.00 0.00 3.66
3314 3753 4.103153 AGTTGGGATTTGTTCTCTCTGTGA 59.897 41.667 0.00 0.00 0.00 3.58
3315 3754 4.916041 TGGGATTTGTTCTCTCTGTGAT 57.084 40.909 0.00 0.00 0.00 3.06
3316 3755 6.013379 AGTTGGGATTTGTTCTCTCTGTGATA 60.013 38.462 0.00 0.00 0.00 2.15
3317 3756 5.982356 TGGGATTTGTTCTCTCTGTGATAG 58.018 41.667 0.00 0.00 0.00 2.08
3318 3757 5.485353 TGGGATTTGTTCTCTCTGTGATAGT 59.515 40.000 0.00 0.00 0.00 2.12
3319 3758 6.667848 TGGGATTTGTTCTCTCTGTGATAGTA 59.332 38.462 0.00 0.00 0.00 1.82
3320 3759 6.981559 GGGATTTGTTCTCTCTGTGATAGTAC 59.018 42.308 0.00 0.00 0.00 2.73
3321 3760 7.363880 GGGATTTGTTCTCTCTGTGATAGTACA 60.364 40.741 0.00 0.00 0.00 2.90
3322 3761 8.200792 GGATTTGTTCTCTCTGTGATAGTACAT 58.799 37.037 0.00 0.00 0.00 2.29
3327 3766 8.989980 TGTTCTCTCTGTGATAGTACATATACG 58.010 37.037 0.00 0.00 36.33 3.06
3328 3767 7.598189 TCTCTCTGTGATAGTACATATACGC 57.402 40.000 0.00 0.00 36.33 4.42
3329 3768 7.159372 TCTCTCTGTGATAGTACATATACGCA 58.841 38.462 0.00 0.00 36.33 5.24
3330 3769 7.824779 TCTCTCTGTGATAGTACATATACGCAT 59.175 37.037 0.00 0.00 36.33 4.73
3331 3770 9.099454 CTCTCTGTGATAGTACATATACGCATA 57.901 37.037 0.00 0.00 36.33 3.14
3332 3771 9.614792 TCTCTGTGATAGTACATATACGCATAT 57.385 33.333 0.00 0.00 36.33 1.78
3342 3781 9.878599 AGTACATATACGCATATTTTTGCTTTC 57.121 29.630 0.00 0.00 40.54 2.62
3343 3782 7.836358 ACATATACGCATATTTTTGCTTTCG 57.164 32.000 0.00 0.00 40.54 3.46
3344 3783 7.414436 ACATATACGCATATTTTTGCTTTCGT 58.586 30.769 0.00 0.00 40.54 3.85
3345 3784 8.552865 ACATATACGCATATTTTTGCTTTCGTA 58.447 29.630 0.00 0.00 40.54 3.43
3346 3785 9.376171 CATATACGCATATTTTTGCTTTCGTAA 57.624 29.630 0.00 0.00 40.54 3.18
3347 3786 5.985526 ACGCATATTTTTGCTTTCGTAAC 57.014 34.783 0.00 0.00 40.54 2.50
3348 3787 5.695818 ACGCATATTTTTGCTTTCGTAACT 58.304 33.333 0.00 0.00 40.54 2.24
3349 3788 5.567534 ACGCATATTTTTGCTTTCGTAACTG 59.432 36.000 0.00 0.00 40.54 3.16
3350 3789 5.496969 CGCATATTTTTGCTTTCGTAACTGC 60.497 40.000 0.00 0.00 40.54 4.40
3351 3790 5.344665 GCATATTTTTGCTTTCGTAACTGCA 59.655 36.000 0.00 0.00 39.57 4.41
3352 3791 6.667386 GCATATTTTTGCTTTCGTAACTGCAC 60.667 38.462 0.00 0.00 39.57 4.57
3353 3792 3.766676 TTTTGCTTTCGTAACTGCACA 57.233 38.095 0.00 0.00 35.01 4.57
3354 3793 2.748461 TTGCTTTCGTAACTGCACAC 57.252 45.000 0.00 0.00 35.01 3.82
3355 3794 1.657822 TGCTTTCGTAACTGCACACA 58.342 45.000 0.00 0.00 0.00 3.72
3356 3795 2.010497 TGCTTTCGTAACTGCACACAA 58.990 42.857 0.00 0.00 0.00 3.33
3357 3796 2.616376 TGCTTTCGTAACTGCACACAAT 59.384 40.909 0.00 0.00 0.00 2.71
3391 3830 5.183140 CAGTGGGAAAACTATTTGGACGATT 59.817 40.000 0.00 0.00 0.00 3.34
3392 3831 5.183140 AGTGGGAAAACTATTTGGACGATTG 59.817 40.000 0.00 0.00 0.00 2.67
3413 3852 9.861138 CGATTGAACTGATTAGAAAATCTCATC 57.139 33.333 0.00 0.00 41.83 2.92
3441 3880 3.688694 ACTGGCGGTACTGTAAAATGA 57.311 42.857 0.00 0.00 0.00 2.57
3485 3924 2.350676 CGCAATAGCAAGTTCAGTGCAA 60.351 45.455 0.00 0.00 44.74 4.08
3500 3939 7.391554 AGTTCAGTGCAATAGTGTGTTTGATAT 59.608 33.333 0.00 0.00 0.00 1.63
3540 3979 6.428385 AGGATTCAAGTCGAAATCAATGTC 57.572 37.500 9.21 0.00 37.12 3.06
3543 3982 6.128172 GGATTCAAGTCGAAATCAATGTCTGT 60.128 38.462 9.21 0.00 37.12 3.41
3551 3990 5.924254 TCGAAATCAATGTCTGTAGTTCGTT 59.076 36.000 0.00 0.00 36.23 3.85
3552 3991 7.061441 GTCGAAATCAATGTCTGTAGTTCGTTA 59.939 37.037 0.00 0.00 36.23 3.18
3553 3992 7.061441 TCGAAATCAATGTCTGTAGTTCGTTAC 59.939 37.037 0.00 0.00 36.23 2.50
3554 3993 7.061905 CGAAATCAATGTCTGTAGTTCGTTACT 59.938 37.037 0.00 0.00 41.04 2.24
3555 3994 7.813852 AATCAATGTCTGTAGTTCGTTACTC 57.186 36.000 0.00 0.00 38.33 2.59
3556 3995 5.706916 TCAATGTCTGTAGTTCGTTACTCC 58.293 41.667 0.00 0.00 38.33 3.85
3557 3996 5.475909 TCAATGTCTGTAGTTCGTTACTCCT 59.524 40.000 0.00 0.00 38.33 3.69
3558 3997 5.564048 ATGTCTGTAGTTCGTTACTCCTC 57.436 43.478 0.00 0.00 38.33 3.71
3559 3998 3.755378 TGTCTGTAGTTCGTTACTCCTCC 59.245 47.826 0.00 0.00 38.33 4.30
3560 3999 3.005554 TCTGTAGTTCGTTACTCCTCCG 58.994 50.000 0.00 0.00 38.33 4.63
3561 4000 2.746362 CTGTAGTTCGTTACTCCTCCGT 59.254 50.000 0.00 0.00 38.33 4.69
3562 4001 3.935203 CTGTAGTTCGTTACTCCTCCGTA 59.065 47.826 0.00 0.00 38.33 4.02
3563 4002 4.323417 TGTAGTTCGTTACTCCTCCGTAA 58.677 43.478 0.00 0.00 38.33 3.18
3564 4003 4.759693 TGTAGTTCGTTACTCCTCCGTAAA 59.240 41.667 0.00 0.00 38.33 2.01
3565 4004 4.431661 AGTTCGTTACTCCTCCGTAAAG 57.568 45.455 0.00 0.00 31.73 1.85
3566 4005 4.074970 AGTTCGTTACTCCTCCGTAAAGA 58.925 43.478 0.00 0.00 36.53 2.52
3567 4006 4.520492 AGTTCGTTACTCCTCCGTAAAGAA 59.480 41.667 7.59 7.59 41.84 2.52
3568 4007 5.010012 AGTTCGTTACTCCTCCGTAAAGAAA 59.990 40.000 11.56 0.00 43.86 2.52
3569 4008 5.649782 TCGTTACTCCTCCGTAAAGAAAT 57.350 39.130 0.00 0.00 35.79 2.17
3570 4009 6.757897 TCGTTACTCCTCCGTAAAGAAATA 57.242 37.500 0.00 0.00 35.79 1.40
3571 4010 7.338800 TCGTTACTCCTCCGTAAAGAAATAT 57.661 36.000 0.00 0.00 35.79 1.28
3572 4011 8.450578 TCGTTACTCCTCCGTAAAGAAATATA 57.549 34.615 0.00 0.00 35.79 0.86
3573 4012 8.902806 TCGTTACTCCTCCGTAAAGAAATATAA 58.097 33.333 0.00 0.00 35.79 0.98
3574 4013 9.178427 CGTTACTCCTCCGTAAAGAAATATAAG 57.822 37.037 0.00 0.00 32.81 1.73
3577 4016 7.435305 ACTCCTCCGTAAAGAAATATAAGAGC 58.565 38.462 0.00 0.00 0.00 4.09
3578 4017 7.069578 ACTCCTCCGTAAAGAAATATAAGAGCA 59.930 37.037 0.00 0.00 0.00 4.26
3579 4018 7.963532 TCCTCCGTAAAGAAATATAAGAGCAT 58.036 34.615 0.00 0.00 0.00 3.79
3580 4019 8.429641 TCCTCCGTAAAGAAATATAAGAGCATT 58.570 33.333 0.00 0.00 0.00 3.56
3581 4020 9.057089 CCTCCGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
3599 4038 8.718102 GAGCATTTAGGTCATTAAAGTAGTGA 57.282 34.615 0.00 0.00 44.14 3.41
3600 4039 9.331282 GAGCATTTAGGTCATTAAAGTAGTGAT 57.669 33.333 0.00 0.00 44.14 3.06
3601 4040 9.686683 AGCATTTAGGTCATTAAAGTAGTGATT 57.313 29.630 0.00 0.00 0.00 2.57
3631 4070 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
3632 4071 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
3648 4087 8.075761 ACAGAGGGAGTACTAAATTACGAATT 57.924 34.615 0.00 0.00 0.00 2.17
3649 4088 8.537858 ACAGAGGGAGTACTAAATTACGAATTT 58.462 33.333 0.00 0.00 43.19 1.82
3650 4089 8.818057 CAGAGGGAGTACTAAATTACGAATTTG 58.182 37.037 0.00 0.00 41.01 2.32
3651 4090 7.985752 AGAGGGAGTACTAAATTACGAATTTGG 59.014 37.037 0.00 12.27 42.81 3.28
3652 4091 7.854337 AGGGAGTACTAAATTACGAATTTGGA 58.146 34.615 16.97 0.00 40.53 3.53
3653 4092 8.491958 AGGGAGTACTAAATTACGAATTTGGAT 58.508 33.333 16.97 8.60 40.53 3.41
3654 4093 9.768662 GGGAGTACTAAATTACGAATTTGGATA 57.231 33.333 16.97 7.99 40.53 2.59
3663 4102 9.950680 AAATTACGAATTTGGATAATGCTACAG 57.049 29.630 0.00 0.00 39.50 2.74
3664 4103 5.424121 ACGAATTTGGATAATGCTACAGC 57.576 39.130 0.00 0.00 42.50 4.40
3665 4104 5.126067 ACGAATTTGGATAATGCTACAGCT 58.874 37.500 2.44 0.00 42.66 4.24
3666 4105 5.008019 ACGAATTTGGATAATGCTACAGCTG 59.992 40.000 13.48 13.48 42.66 4.24
3667 4106 4.843220 ATTTGGATAATGCTACAGCTGC 57.157 40.909 15.27 0.00 42.66 5.25
3676 4115 2.910199 TGCTACAGCTGCCTTATCTTG 58.090 47.619 15.27 0.00 42.66 3.02
3680 4119 1.005215 ACAGCTGCCTTATCTTGCCTT 59.995 47.619 15.27 0.00 0.00 4.35
3744 4185 5.596836 TTCTTGAGCAAAGTTTGGTGATT 57.403 34.783 24.13 0.00 42.23 2.57
3746 4187 5.591099 TCTTGAGCAAAGTTTGGTGATTTC 58.409 37.500 24.13 10.26 42.23 2.17
3783 4224 4.880120 TGAAATTCAGATGAGTGATGCCTC 59.120 41.667 0.00 0.00 0.00 4.70
3784 4225 2.996249 TTCAGATGAGTGATGCCTCC 57.004 50.000 0.00 0.00 0.00 4.30
3800 4241 3.645212 TGCCTCCTAATTCAGAGATGAGG 59.355 47.826 6.28 0.00 40.65 3.86
3806 4247 5.365025 TCCTAATTCAGAGATGAGGTTCAGG 59.635 44.000 0.00 0.00 0.00 3.86
3810 4251 1.144936 GAGATGAGGTTCAGGGCCG 59.855 63.158 0.00 0.00 0.00 6.13
3816 4257 4.740822 GGTTCAGGGCCGTGGCAT 62.741 66.667 24.54 0.00 44.11 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 6.597280 AGAAACAGAGCAGGTATTGAAATCTC 59.403 38.462 0.00 0.00 0.00 2.75
168 169 4.166523 TCGAGTTTCTGCTACAATTCGAG 58.833 43.478 6.05 0.00 36.55 4.04
279 280 7.223584 TGAGATGACTGAATAGTTGGTTCAAA 58.776 34.615 0.00 0.00 37.25 2.69
351 362 4.572985 TGCTCCAGTTTCAAATCAACAG 57.427 40.909 0.00 0.00 0.00 3.16
484 510 6.610075 AACCTCAATGCTTAACAATCCAAT 57.390 33.333 0.00 0.00 0.00 3.16
630 656 2.068915 CAAAGCCTGGGCCCAATTT 58.931 52.632 28.29 22.66 43.17 1.82
631 657 2.595884 GCAAAGCCTGGGCCCAATT 61.596 57.895 28.29 17.98 43.17 2.32
764 802 1.957177 GAGGAGGATGAGCGTATGACA 59.043 52.381 0.00 0.00 0.00 3.58
886 924 0.538746 GGGAGAGGGTTGCGGAAAAA 60.539 55.000 0.00 0.00 0.00 1.94
975 1013 2.283298 GAAGGATCAGAAGCGATGCAA 58.717 47.619 0.00 0.00 36.28 4.08
1047 1085 9.170584 GACTAATAAACACAAAGAGAAAAGCAC 57.829 33.333 0.00 0.00 0.00 4.40
1246 1284 9.969001 ACACAACAATGTAAGGTTATAAGGTAT 57.031 29.630 0.00 0.00 37.82 2.73
1336 1375 4.821589 CTCCGGCCGCTCCTTGAC 62.822 72.222 22.85 0.00 0.00 3.18
1448 1488 0.962855 GGAAAGGCTCCAGCACCTTC 60.963 60.000 0.03 0.15 45.62 3.46
1747 1787 2.280628 GTTAAGCGCCATAAGCTGAGT 58.719 47.619 2.29 0.00 45.31 3.41
1768 1824 9.378551 TCCACAGCAAAGTACTGTATTAATTAG 57.621 33.333 0.00 0.00 46.44 1.73
1924 2094 2.742053 CAAGTTGTGGTTCCAGATACCG 59.258 50.000 0.00 0.00 38.55 4.02
1926 2096 3.058224 GTGCAAGTTGTGGTTCCAGATAC 60.058 47.826 4.48 0.00 0.00 2.24
1938 2108 3.951115 CACATGCAGTGCAAGTTGT 57.049 47.368 22.56 18.79 43.62 3.32
1993 2247 9.171877 TCAAAACTTTCAACAAATTATGGCTTT 57.828 25.926 0.00 0.00 0.00 3.51
2007 2269 8.533569 ACCTCCTAAAGAATCAAAACTTTCAA 57.466 30.769 0.00 0.00 37.49 2.69
2010 2272 7.710907 GCAAACCTCCTAAAGAATCAAAACTTT 59.289 33.333 0.00 0.00 39.27 2.66
2046 2308 6.315393 CCTACGTATTACCAAACTTGAGCAAT 59.685 38.462 0.00 0.00 0.00 3.56
2117 2384 8.141268 TCTAACAATTGGTTGGATTTTTGACTC 58.859 33.333 10.83 0.00 41.44 3.36
2118 2385 8.017418 TCTAACAATTGGTTGGATTTTTGACT 57.983 30.769 10.83 0.00 41.44 3.41
2142 2409 6.218746 AGTGTTTTCAAAATGAGCAGGAATC 58.781 36.000 0.00 0.00 0.00 2.52
2156 2423 5.923733 AACAACCACCATAGTGTTTTCAA 57.076 34.783 0.00 0.00 42.88 2.69
2157 2424 5.923733 AAACAACCACCATAGTGTTTTCA 57.076 34.783 0.00 0.00 42.88 2.69
2217 2484 6.581171 AGAAATGGTTGAAGATTCTTCCAC 57.419 37.500 20.87 19.34 35.11 4.02
2388 2819 3.005367 CCTTTTGCGGTGGTTGAAGTAAT 59.995 43.478 0.00 0.00 0.00 1.89
2396 2827 0.106116 TAACCCCTTTTGCGGTGGTT 60.106 50.000 0.00 0.00 39.42 3.67
2523 2954 5.640357 GGTTTCAATATGAACTACACACGGA 59.360 40.000 0.00 0.00 35.89 4.69
2549 2980 9.503399 CTCCGTTTCTAAATATAAGCCCTTTAT 57.497 33.333 0.00 0.00 36.05 1.40
2557 2989 8.636213 TGTACTCCCTCCGTTTCTAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
2571 3003 2.623889 CCTTAGTGATGTACTCCCTCCG 59.376 54.545 0.00 0.00 40.89 4.63
2658 3093 6.560003 TCAGACCATGAAGCTAATTAAGGA 57.440 37.500 0.00 0.00 34.02 3.36
2678 3116 5.452078 TCCTGCAAACATAAAGGTTTCAG 57.548 39.130 10.20 10.20 38.86 3.02
2838 3277 1.306148 CACAGATCGCAATGCCATCT 58.694 50.000 9.52 9.52 0.00 2.90
2886 3325 6.269307 ACAAGGAGAAGGTTACAGTAGCTTTA 59.731 38.462 0.00 0.00 36.09 1.85
2889 3328 4.161102 ACAAGGAGAAGGTTACAGTAGCT 58.839 43.478 0.00 0.00 0.00 3.32
2891 3330 6.424207 GTGAAACAAGGAGAAGGTTACAGTAG 59.576 42.308 0.00 0.00 36.32 2.57
2892 3331 6.099269 AGTGAAACAAGGAGAAGGTTACAGTA 59.901 38.462 0.00 0.00 41.43 2.74
2984 3423 3.039252 TCCAAAACCATCACAAAGGGT 57.961 42.857 0.00 0.00 36.19 4.34
3010 3449 7.504924 TTTTTACACATCTTCAGGTACCTTG 57.495 36.000 13.15 10.49 0.00 3.61
3037 3476 7.596995 GCTAGTAGCTACGATCAAATGAGATTT 59.403 37.037 17.99 0.00 38.45 2.17
3038 3477 7.087639 GCTAGTAGCTACGATCAAATGAGATT 58.912 38.462 17.99 0.00 38.45 2.40
3039 3478 6.207614 TGCTAGTAGCTACGATCAAATGAGAT 59.792 38.462 22.34 0.00 42.97 2.75
3040 3479 5.531287 TGCTAGTAGCTACGATCAAATGAGA 59.469 40.000 22.34 0.00 42.97 3.27
3041 3480 5.763088 TGCTAGTAGCTACGATCAAATGAG 58.237 41.667 22.34 6.79 42.97 2.90
3042 3481 5.767816 TGCTAGTAGCTACGATCAAATGA 57.232 39.130 22.34 0.00 42.97 2.57
3043 3482 6.617317 GCAATGCTAGTAGCTACGATCAAATG 60.617 42.308 22.34 16.69 42.97 2.32
3044 3483 5.406780 GCAATGCTAGTAGCTACGATCAAAT 59.593 40.000 22.34 6.06 42.97 2.32
3045 3484 4.745125 GCAATGCTAGTAGCTACGATCAAA 59.255 41.667 22.34 4.13 42.97 2.69
3046 3485 4.299155 GCAATGCTAGTAGCTACGATCAA 58.701 43.478 22.34 5.16 42.97 2.57
3047 3486 3.609409 CGCAATGCTAGTAGCTACGATCA 60.609 47.826 22.34 14.80 42.97 2.92
3048 3487 2.911723 CGCAATGCTAGTAGCTACGATC 59.088 50.000 22.34 9.41 42.97 3.69
3049 3488 2.293677 ACGCAATGCTAGTAGCTACGAT 59.706 45.455 22.34 5.35 42.97 3.73
3050 3489 1.674441 ACGCAATGCTAGTAGCTACGA 59.326 47.619 22.34 12.28 42.97 3.43
3051 3490 1.781429 CACGCAATGCTAGTAGCTACG 59.219 52.381 22.34 20.02 42.97 3.51
3052 3491 3.046390 CTCACGCAATGCTAGTAGCTAC 58.954 50.000 22.34 16.43 42.97 3.58
3053 3492 2.543861 GCTCACGCAATGCTAGTAGCTA 60.544 50.000 22.34 9.84 37.92 3.32
3054 3493 1.804372 GCTCACGCAATGCTAGTAGCT 60.804 52.381 22.34 6.04 37.92 3.32
3055 3494 0.579156 GCTCACGCAATGCTAGTAGC 59.421 55.000 15.56 15.56 37.70 3.58
3056 3495 2.215907 AGCTCACGCAATGCTAGTAG 57.784 50.000 2.94 0.00 39.10 2.57
3057 3496 3.793797 TTAGCTCACGCAATGCTAGTA 57.206 42.857 2.94 0.00 39.91 1.82
3058 3497 2.672961 TTAGCTCACGCAATGCTAGT 57.327 45.000 2.94 0.00 39.91 2.57
3059 3498 2.286294 CCTTTAGCTCACGCAATGCTAG 59.714 50.000 2.94 0.00 39.91 3.42
3060 3499 2.279741 CCTTTAGCTCACGCAATGCTA 58.720 47.619 2.94 0.00 38.15 3.49
3061 3500 1.089920 CCTTTAGCTCACGCAATGCT 58.910 50.000 2.94 0.00 40.43 3.79
3062 3501 0.524180 GCCTTTAGCTCACGCAATGC 60.524 55.000 0.00 0.00 39.10 3.56
3063 3502 3.611433 GCCTTTAGCTCACGCAATG 57.389 52.632 0.00 0.00 39.10 2.82
3073 3512 2.317530 ACTCGGATTCAGCCTTTAGC 57.682 50.000 0.00 0.00 44.25 3.09
3074 3513 4.331168 CAGAAACTCGGATTCAGCCTTTAG 59.669 45.833 0.00 0.00 0.00 1.85
3075 3514 4.253685 CAGAAACTCGGATTCAGCCTTTA 58.746 43.478 0.00 0.00 0.00 1.85
3076 3515 3.077359 CAGAAACTCGGATTCAGCCTTT 58.923 45.455 0.00 0.00 0.00 3.11
3077 3516 2.704572 CAGAAACTCGGATTCAGCCTT 58.295 47.619 0.00 0.00 0.00 4.35
3078 3517 1.677217 GCAGAAACTCGGATTCAGCCT 60.677 52.381 0.00 0.00 34.39 4.58
3079 3518 0.729690 GCAGAAACTCGGATTCAGCC 59.270 55.000 0.00 0.00 34.39 4.85
3080 3519 1.129437 GTGCAGAAACTCGGATTCAGC 59.871 52.381 0.00 2.79 39.08 4.26
3081 3520 2.414481 CAGTGCAGAAACTCGGATTCAG 59.586 50.000 0.00 0.00 0.00 3.02
3082 3521 2.416747 CAGTGCAGAAACTCGGATTCA 58.583 47.619 0.00 0.00 0.00 2.57
3083 3522 1.734465 CCAGTGCAGAAACTCGGATTC 59.266 52.381 0.00 0.00 0.00 2.52
3084 3523 1.072331 ACCAGTGCAGAAACTCGGATT 59.928 47.619 0.00 0.00 0.00 3.01
3085 3524 0.687354 ACCAGTGCAGAAACTCGGAT 59.313 50.000 0.00 0.00 0.00 4.18
3086 3525 0.033504 GACCAGTGCAGAAACTCGGA 59.966 55.000 0.00 0.00 0.00 4.55
3087 3526 0.034059 AGACCAGTGCAGAAACTCGG 59.966 55.000 0.00 0.00 0.00 4.63
3088 3527 1.795286 GAAGACCAGTGCAGAAACTCG 59.205 52.381 0.00 0.00 0.00 4.18
3089 3528 3.118905 AGAAGACCAGTGCAGAAACTC 57.881 47.619 0.00 0.00 0.00 3.01
3090 3529 3.567478 AAGAAGACCAGTGCAGAAACT 57.433 42.857 0.00 0.00 0.00 2.66
3091 3530 3.243201 CCAAAGAAGACCAGTGCAGAAAC 60.243 47.826 0.00 0.00 0.00 2.78
3092 3531 2.951642 CCAAAGAAGACCAGTGCAGAAA 59.048 45.455 0.00 0.00 0.00 2.52
3093 3532 2.575532 CCAAAGAAGACCAGTGCAGAA 58.424 47.619 0.00 0.00 0.00 3.02
3094 3533 1.202806 CCCAAAGAAGACCAGTGCAGA 60.203 52.381 0.00 0.00 0.00 4.26
3095 3534 1.242076 CCCAAAGAAGACCAGTGCAG 58.758 55.000 0.00 0.00 0.00 4.41
3096 3535 0.550914 ACCCAAAGAAGACCAGTGCA 59.449 50.000 0.00 0.00 0.00 4.57
3097 3536 1.609072 GAACCCAAAGAAGACCAGTGC 59.391 52.381 0.00 0.00 0.00 4.40
3098 3537 2.618709 GTGAACCCAAAGAAGACCAGTG 59.381 50.000 0.00 0.00 0.00 3.66
3099 3538 2.241176 TGTGAACCCAAAGAAGACCAGT 59.759 45.455 0.00 0.00 0.00 4.00
3100 3539 2.618709 GTGTGAACCCAAAGAAGACCAG 59.381 50.000 0.00 0.00 0.00 4.00
3101 3540 2.241176 AGTGTGAACCCAAAGAAGACCA 59.759 45.455 0.00 0.00 0.00 4.02
3102 3541 2.932261 AGTGTGAACCCAAAGAAGACC 58.068 47.619 0.00 0.00 0.00 3.85
3103 3542 3.315470 GGAAGTGTGAACCCAAAGAAGAC 59.685 47.826 0.00 0.00 0.00 3.01
3104 3543 3.551846 GGAAGTGTGAACCCAAAGAAGA 58.448 45.455 0.00 0.00 0.00 2.87
3105 3544 2.290641 CGGAAGTGTGAACCCAAAGAAG 59.709 50.000 0.00 0.00 0.00 2.85
3106 3545 2.294074 CGGAAGTGTGAACCCAAAGAA 58.706 47.619 0.00 0.00 0.00 2.52
3107 3546 1.210967 ACGGAAGTGTGAACCCAAAGA 59.789 47.619 0.00 0.00 46.97 2.52
3108 3547 1.675552 ACGGAAGTGTGAACCCAAAG 58.324 50.000 0.00 0.00 46.97 2.77
3109 3548 3.886324 ACGGAAGTGTGAACCCAAA 57.114 47.368 0.00 0.00 46.97 3.28
3121 3560 3.758554 AGGTTGATGGAAATTGACGGAAG 59.241 43.478 0.00 0.00 0.00 3.46
3122 3561 3.761897 AGGTTGATGGAAATTGACGGAA 58.238 40.909 0.00 0.00 0.00 4.30
3123 3562 3.433306 AGGTTGATGGAAATTGACGGA 57.567 42.857 0.00 0.00 0.00 4.69
3124 3563 3.505680 TCAAGGTTGATGGAAATTGACGG 59.494 43.478 0.00 0.00 31.01 4.79
3125 3564 4.764679 TCAAGGTTGATGGAAATTGACG 57.235 40.909 0.00 0.00 31.01 4.35
3126 3565 6.458210 ACATTCAAGGTTGATGGAAATTGAC 58.542 36.000 0.00 0.00 37.00 3.18
3127 3566 6.669125 ACATTCAAGGTTGATGGAAATTGA 57.331 33.333 0.00 0.00 37.00 2.57
3131 3570 9.699410 AGATAATACATTCAAGGTTGATGGAAA 57.301 29.630 0.00 0.00 37.00 3.13
3132 3571 9.342308 GAGATAATACATTCAAGGTTGATGGAA 57.658 33.333 0.00 0.00 37.00 3.53
3133 3572 8.717717 AGAGATAATACATTCAAGGTTGATGGA 58.282 33.333 0.00 0.00 37.00 3.41
3134 3573 8.915057 AGAGATAATACATTCAAGGTTGATGG 57.085 34.615 0.00 0.00 37.00 3.51
3137 3576 9.958180 TTGAAGAGATAATACATTCAAGGTTGA 57.042 29.630 0.00 0.00 35.55 3.18
3184 3623 1.464608 CATCACTTACTGCCGTGTTGG 59.535 52.381 0.00 0.00 42.50 3.77
3185 3624 2.412870 TCATCACTTACTGCCGTGTTG 58.587 47.619 0.00 0.00 34.03 3.33
3186 3625 2.688507 CTCATCACTTACTGCCGTGTT 58.311 47.619 0.00 0.00 33.07 3.32
3187 3626 1.673033 GCTCATCACTTACTGCCGTGT 60.673 52.381 0.00 0.00 33.07 4.49
3188 3627 1.002366 GCTCATCACTTACTGCCGTG 58.998 55.000 0.00 0.00 0.00 4.94
3189 3628 0.898320 AGCTCATCACTTACTGCCGT 59.102 50.000 0.00 0.00 0.00 5.68
3190 3629 1.929836 GAAGCTCATCACTTACTGCCG 59.070 52.381 0.00 0.00 0.00 5.69
3191 3630 2.977914 TGAAGCTCATCACTTACTGCC 58.022 47.619 0.00 0.00 0.00 4.85
3192 3631 5.007136 GGTTATGAAGCTCATCACTTACTGC 59.993 44.000 2.47 0.00 38.26 4.40
3193 3632 6.108687 TGGTTATGAAGCTCATCACTTACTG 58.891 40.000 2.47 0.00 38.26 2.74
3194 3633 6.299805 TGGTTATGAAGCTCATCACTTACT 57.700 37.500 2.47 0.00 38.26 2.24
3195 3634 6.371548 TGTTGGTTATGAAGCTCATCACTTAC 59.628 38.462 2.47 5.73 38.26 2.34
3196 3635 6.371548 GTGTTGGTTATGAAGCTCATCACTTA 59.628 38.462 2.47 0.00 38.26 2.24
3197 3636 5.182001 GTGTTGGTTATGAAGCTCATCACTT 59.818 40.000 2.47 0.00 38.26 3.16
3198 3637 4.697352 GTGTTGGTTATGAAGCTCATCACT 59.303 41.667 2.47 0.00 38.26 3.41
3199 3638 4.436050 CGTGTTGGTTATGAAGCTCATCAC 60.436 45.833 2.47 2.29 38.26 3.06
3200 3639 3.684305 CGTGTTGGTTATGAAGCTCATCA 59.316 43.478 2.47 0.00 38.26 3.07
3201 3640 3.063997 CCGTGTTGGTTATGAAGCTCATC 59.936 47.826 2.47 0.00 38.26 2.92
3202 3641 3.009723 CCGTGTTGGTTATGAAGCTCAT 58.990 45.455 0.00 0.00 40.72 2.90
3203 3642 2.422597 CCGTGTTGGTTATGAAGCTCA 58.577 47.619 0.00 0.00 0.00 4.26
3204 3643 1.130561 GCCGTGTTGGTTATGAAGCTC 59.869 52.381 0.00 0.00 41.21 4.09
3205 3644 1.165270 GCCGTGTTGGTTATGAAGCT 58.835 50.000 0.00 0.00 41.21 3.74
3206 3645 0.878416 TGCCGTGTTGGTTATGAAGC 59.122 50.000 0.00 0.00 41.21 3.86
3207 3646 2.422597 TCTGCCGTGTTGGTTATGAAG 58.577 47.619 0.00 0.00 41.21 3.02
3208 3647 2.552599 TCTGCCGTGTTGGTTATGAA 57.447 45.000 0.00 0.00 41.21 2.57
3209 3648 2.552599 TTCTGCCGTGTTGGTTATGA 57.447 45.000 0.00 0.00 41.21 2.15
3210 3649 2.095263 CCTTTCTGCCGTGTTGGTTATG 60.095 50.000 0.00 0.00 41.21 1.90
3211 3650 2.159382 CCTTTCTGCCGTGTTGGTTAT 58.841 47.619 0.00 0.00 41.21 1.89
3212 3651 1.141254 TCCTTTCTGCCGTGTTGGTTA 59.859 47.619 0.00 0.00 41.21 2.85
3213 3652 0.106918 TCCTTTCTGCCGTGTTGGTT 60.107 50.000 0.00 0.00 41.21 3.67
3214 3653 0.106918 TTCCTTTCTGCCGTGTTGGT 60.107 50.000 0.00 0.00 41.21 3.67
3215 3654 1.001378 CTTTCCTTTCTGCCGTGTTGG 60.001 52.381 0.00 0.00 42.50 3.77
3216 3655 1.946768 TCTTTCCTTTCTGCCGTGTTG 59.053 47.619 0.00 0.00 0.00 3.33
3217 3656 2.341846 TCTTTCCTTTCTGCCGTGTT 57.658 45.000 0.00 0.00 0.00 3.32
3218 3657 2.154462 CATCTTTCCTTTCTGCCGTGT 58.846 47.619 0.00 0.00 0.00 4.49
3219 3658 1.135575 GCATCTTTCCTTTCTGCCGTG 60.136 52.381 0.00 0.00 0.00 4.94
3220 3659 1.168714 GCATCTTTCCTTTCTGCCGT 58.831 50.000 0.00 0.00 0.00 5.68
3221 3660 1.131883 CAGCATCTTTCCTTTCTGCCG 59.868 52.381 0.00 0.00 33.34 5.69
3222 3661 2.163211 GACAGCATCTTTCCTTTCTGCC 59.837 50.000 0.00 0.00 33.34 4.85
3223 3662 2.816087 TGACAGCATCTTTCCTTTCTGC 59.184 45.455 0.00 0.00 0.00 4.26
3224 3663 4.082895 CCTTGACAGCATCTTTCCTTTCTG 60.083 45.833 0.00 0.00 0.00 3.02
3225 3664 4.077822 CCTTGACAGCATCTTTCCTTTCT 58.922 43.478 0.00 0.00 0.00 2.52
3226 3665 4.074970 TCCTTGACAGCATCTTTCCTTTC 58.925 43.478 0.00 0.00 0.00 2.62
3227 3666 4.077822 CTCCTTGACAGCATCTTTCCTTT 58.922 43.478 0.00 0.00 0.00 3.11
3228 3667 3.560882 CCTCCTTGACAGCATCTTTCCTT 60.561 47.826 0.00 0.00 0.00 3.36
3229 3668 2.026449 CCTCCTTGACAGCATCTTTCCT 60.026 50.000 0.00 0.00 0.00 3.36
3230 3669 2.026822 TCCTCCTTGACAGCATCTTTCC 60.027 50.000 0.00 0.00 0.00 3.13
3231 3670 3.055530 TCTCCTCCTTGACAGCATCTTTC 60.056 47.826 0.00 0.00 0.00 2.62
3232 3671 2.909006 TCTCCTCCTTGACAGCATCTTT 59.091 45.455 0.00 0.00 0.00 2.52
3233 3672 2.544721 TCTCCTCCTTGACAGCATCTT 58.455 47.619 0.00 0.00 0.00 2.40
3234 3673 2.235898 GTTCTCCTCCTTGACAGCATCT 59.764 50.000 0.00 0.00 0.00 2.90
3235 3674 2.626840 GTTCTCCTCCTTGACAGCATC 58.373 52.381 0.00 0.00 0.00 3.91
3236 3675 1.280421 GGTTCTCCTCCTTGACAGCAT 59.720 52.381 0.00 0.00 0.00 3.79
3237 3676 0.687354 GGTTCTCCTCCTTGACAGCA 59.313 55.000 0.00 0.00 0.00 4.41
3238 3677 0.687354 TGGTTCTCCTCCTTGACAGC 59.313 55.000 0.00 0.00 34.23 4.40
3239 3678 1.974236 AGTGGTTCTCCTCCTTGACAG 59.026 52.381 0.00 0.00 34.23 3.51
3240 3679 2.103153 AGTGGTTCTCCTCCTTGACA 57.897 50.000 0.00 0.00 34.23 3.58
3241 3680 3.579151 AGTAAGTGGTTCTCCTCCTTGAC 59.421 47.826 0.00 0.00 31.63 3.18
3242 3681 3.578716 CAGTAAGTGGTTCTCCTCCTTGA 59.421 47.826 0.00 0.00 31.63 3.02
3243 3682 3.325135 ACAGTAAGTGGTTCTCCTCCTTG 59.675 47.826 0.00 0.00 31.63 3.61
3244 3683 3.325135 CACAGTAAGTGGTTCTCCTCCTT 59.675 47.826 0.00 0.00 44.69 3.36
3245 3684 2.900546 CACAGTAAGTGGTTCTCCTCCT 59.099 50.000 0.00 0.00 44.69 3.69
3246 3685 3.320673 CACAGTAAGTGGTTCTCCTCC 57.679 52.381 0.00 0.00 44.69 4.30
3257 3696 6.992715 ACTTAGCATGTCTTTTCACAGTAAGT 59.007 34.615 0.00 0.00 0.00 2.24
3258 3697 7.293745 CACTTAGCATGTCTTTTCACAGTAAG 58.706 38.462 0.00 0.00 0.00 2.34
3259 3698 6.293407 GCACTTAGCATGTCTTTTCACAGTAA 60.293 38.462 0.00 0.00 44.79 2.24
3260 3699 5.179368 GCACTTAGCATGTCTTTTCACAGTA 59.821 40.000 0.00 0.00 44.79 2.74
3261 3700 4.023707 GCACTTAGCATGTCTTTTCACAGT 60.024 41.667 0.00 0.00 44.79 3.55
3262 3701 4.470462 GCACTTAGCATGTCTTTTCACAG 58.530 43.478 0.00 0.00 44.79 3.66
3263 3702 4.488126 GCACTTAGCATGTCTTTTCACA 57.512 40.909 0.00 0.00 44.79 3.58
3276 3715 2.484264 CCCAACTTACTGTGCACTTAGC 59.516 50.000 19.41 0.00 45.96 3.09
3277 3716 4.002906 TCCCAACTTACTGTGCACTTAG 57.997 45.455 19.41 10.62 0.00 2.18
3278 3717 4.634012 ATCCCAACTTACTGTGCACTTA 57.366 40.909 19.41 6.53 0.00 2.24
3279 3718 3.508845 ATCCCAACTTACTGTGCACTT 57.491 42.857 19.41 7.60 0.00 3.16
3280 3719 3.508845 AATCCCAACTTACTGTGCACT 57.491 42.857 19.41 0.28 0.00 4.40
3281 3720 3.317993 ACAAATCCCAACTTACTGTGCAC 59.682 43.478 10.75 10.75 0.00 4.57
3282 3721 3.561143 ACAAATCCCAACTTACTGTGCA 58.439 40.909 0.00 0.00 0.00 4.57
3283 3722 4.278419 AGAACAAATCCCAACTTACTGTGC 59.722 41.667 0.00 0.00 0.00 4.57
3284 3723 5.765182 AGAGAACAAATCCCAACTTACTGTG 59.235 40.000 0.00 0.00 0.00 3.66
3285 3724 5.941788 AGAGAACAAATCCCAACTTACTGT 58.058 37.500 0.00 0.00 0.00 3.55
3286 3725 6.148480 CAGAGAGAACAAATCCCAACTTACTG 59.852 42.308 0.00 0.00 0.00 2.74
3287 3726 6.183361 ACAGAGAGAACAAATCCCAACTTACT 60.183 38.462 0.00 0.00 0.00 2.24
3288 3727 5.998363 ACAGAGAGAACAAATCCCAACTTAC 59.002 40.000 0.00 0.00 0.00 2.34
3289 3728 5.997746 CACAGAGAGAACAAATCCCAACTTA 59.002 40.000 0.00 0.00 0.00 2.24
3290 3729 4.823989 CACAGAGAGAACAAATCCCAACTT 59.176 41.667 0.00 0.00 0.00 2.66
3291 3730 4.103153 TCACAGAGAGAACAAATCCCAACT 59.897 41.667 0.00 0.00 0.00 3.16
3292 3731 4.389374 TCACAGAGAGAACAAATCCCAAC 58.611 43.478 0.00 0.00 0.00 3.77
3293 3732 4.705110 TCACAGAGAGAACAAATCCCAA 57.295 40.909 0.00 0.00 0.00 4.12
3294 3733 4.916041 ATCACAGAGAGAACAAATCCCA 57.084 40.909 0.00 0.00 0.00 4.37
3295 3734 5.983540 ACTATCACAGAGAGAACAAATCCC 58.016 41.667 0.00 0.00 0.00 3.85
3296 3735 7.548097 TGTACTATCACAGAGAGAACAAATCC 58.452 38.462 0.00 0.00 0.00 3.01
3301 3740 8.989980 CGTATATGTACTATCACAGAGAGAACA 58.010 37.037 0.00 0.00 0.00 3.18
3302 3741 7.958567 GCGTATATGTACTATCACAGAGAGAAC 59.041 40.741 0.00 0.00 0.00 3.01
3303 3742 7.660208 TGCGTATATGTACTATCACAGAGAGAA 59.340 37.037 0.00 0.00 0.00 2.87
3304 3743 7.159372 TGCGTATATGTACTATCACAGAGAGA 58.841 38.462 0.00 0.00 0.00 3.10
3305 3744 7.365840 TGCGTATATGTACTATCACAGAGAG 57.634 40.000 0.00 0.00 0.00 3.20
3306 3745 7.923414 ATGCGTATATGTACTATCACAGAGA 57.077 36.000 0.00 0.00 0.00 3.10
3327 3766 5.344665 TGCAGTTACGAAAGCAAAAATATGC 59.655 36.000 0.00 0.00 46.78 3.14
3328 3767 6.362016 TGTGCAGTTACGAAAGCAAAAATATG 59.638 34.615 0.00 0.00 38.91 1.78
3329 3768 6.362283 GTGTGCAGTTACGAAAGCAAAAATAT 59.638 34.615 0.00 0.00 38.91 1.28
3330 3769 5.683743 GTGTGCAGTTACGAAAGCAAAAATA 59.316 36.000 0.00 0.00 38.91 1.40
3331 3770 4.502645 GTGTGCAGTTACGAAAGCAAAAAT 59.497 37.500 0.00 0.00 38.91 1.82
3332 3771 3.854809 GTGTGCAGTTACGAAAGCAAAAA 59.145 39.130 0.00 0.00 38.91 1.94
3333 3772 3.119814 TGTGTGCAGTTACGAAAGCAAAA 60.120 39.130 0.00 0.00 38.91 2.44
3334 3773 2.420372 TGTGTGCAGTTACGAAAGCAAA 59.580 40.909 0.00 0.00 38.91 3.68
3335 3774 2.010497 TGTGTGCAGTTACGAAAGCAA 58.990 42.857 0.00 0.00 38.91 3.91
3336 3775 1.657822 TGTGTGCAGTTACGAAAGCA 58.342 45.000 0.00 0.00 34.10 3.91
3337 3776 2.748461 TTGTGTGCAGTTACGAAAGC 57.252 45.000 0.00 0.00 0.00 3.51
3338 3777 7.480542 GGTATTTATTGTGTGCAGTTACGAAAG 59.519 37.037 0.00 0.00 0.00 2.62
3339 3778 7.041303 TGGTATTTATTGTGTGCAGTTACGAAA 60.041 33.333 0.00 0.00 0.00 3.46
3340 3779 6.427242 TGGTATTTATTGTGTGCAGTTACGAA 59.573 34.615 0.00 0.00 0.00 3.85
3341 3780 5.932883 TGGTATTTATTGTGTGCAGTTACGA 59.067 36.000 0.00 0.00 0.00 3.43
3342 3781 6.171932 TGGTATTTATTGTGTGCAGTTACG 57.828 37.500 0.00 0.00 0.00 3.18
3343 3782 7.757526 TGATGGTATTTATTGTGTGCAGTTAC 58.242 34.615 0.00 0.00 0.00 2.50
3344 3783 7.609918 ACTGATGGTATTTATTGTGTGCAGTTA 59.390 33.333 0.00 0.00 0.00 2.24
3345 3784 6.434028 ACTGATGGTATTTATTGTGTGCAGTT 59.566 34.615 0.00 0.00 0.00 3.16
3346 3785 5.945784 ACTGATGGTATTTATTGTGTGCAGT 59.054 36.000 0.00 0.00 0.00 4.40
3347 3786 6.260377 CACTGATGGTATTTATTGTGTGCAG 58.740 40.000 0.00 0.00 0.00 4.41
3348 3787 5.125257 CCACTGATGGTATTTATTGTGTGCA 59.875 40.000 0.00 0.00 41.64 4.57
3349 3788 5.450412 CCCACTGATGGTATTTATTGTGTGC 60.450 44.000 0.00 0.00 45.66 4.57
3350 3789 5.885352 TCCCACTGATGGTATTTATTGTGTG 59.115 40.000 0.00 0.00 45.66 3.82
3351 3790 6.073447 TCCCACTGATGGTATTTATTGTGT 57.927 37.500 0.00 0.00 45.66 3.72
3352 3791 7.403312 TTTCCCACTGATGGTATTTATTGTG 57.597 36.000 0.00 0.00 45.66 3.33
3353 3792 7.673926 AGTTTTCCCACTGATGGTATTTATTGT 59.326 33.333 0.00 0.00 45.66 2.71
3354 3793 8.066612 AGTTTTCCCACTGATGGTATTTATTG 57.933 34.615 0.00 0.00 45.66 1.90
3355 3794 9.936329 ATAGTTTTCCCACTGATGGTATTTATT 57.064 29.630 0.00 0.00 45.66 1.40
3356 3795 9.936329 AATAGTTTTCCCACTGATGGTATTTAT 57.064 29.630 0.00 0.00 45.66 1.40
3357 3796 9.762381 AAATAGTTTTCCCACTGATGGTATTTA 57.238 29.630 0.00 0.00 45.66 1.40
3392 3831 8.987890 GCCTAGATGAGATTTTCTAATCAGTTC 58.012 37.037 4.97 0.00 42.18 3.01
3413 3852 0.249398 AGTACCGCCAGTTTGCCTAG 59.751 55.000 0.00 0.00 0.00 3.02
3415 3854 1.302511 CAGTACCGCCAGTTTGCCT 60.303 57.895 0.00 0.00 0.00 4.75
3441 3880 6.166279 CGATGGACAATATAATGGTACTGCT 58.834 40.000 0.00 0.00 0.00 4.24
3540 3979 2.746362 ACGGAGGAGTAACGAACTACAG 59.254 50.000 7.48 2.14 42.17 2.74
3543 3982 5.245531 TCTTTACGGAGGAGTAACGAACTA 58.754 41.667 0.00 0.00 39.07 2.24
3551 3990 8.574737 GCTCTTATATTTCTTTACGGAGGAGTA 58.425 37.037 0.00 0.00 0.00 2.59
3552 3991 7.069578 TGCTCTTATATTTCTTTACGGAGGAGT 59.930 37.037 0.00 0.00 0.00 3.85
3553 3992 7.434492 TGCTCTTATATTTCTTTACGGAGGAG 58.566 38.462 0.00 0.00 0.00 3.69
3554 3993 7.356089 TGCTCTTATATTTCTTTACGGAGGA 57.644 36.000 0.00 0.00 0.00 3.71
3555 3994 8.608844 AATGCTCTTATATTTCTTTACGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
3572 4011 9.167311 CACTACTTTAATGACCTAAATGCTCTT 57.833 33.333 0.00 0.00 0.00 2.85
3573 4012 8.540388 TCACTACTTTAATGACCTAAATGCTCT 58.460 33.333 0.00 0.00 0.00 4.09
3574 4013 8.718102 TCACTACTTTAATGACCTAAATGCTC 57.282 34.615 0.00 0.00 0.00 4.26
3575 4014 9.686683 AATCACTACTTTAATGACCTAAATGCT 57.313 29.630 0.00 0.00 0.00 3.79
3605 4044 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
3606 4045 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
3607 4046 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
3618 4057 8.680903 CGTAATTTAGTACTCCCTCTGTAAAGA 58.319 37.037 0.00 0.00 0.00 2.52
3619 4058 8.680903 TCGTAATTTAGTACTCCCTCTGTAAAG 58.319 37.037 0.00 0.00 0.00 1.85
3620 4059 8.579850 TCGTAATTTAGTACTCCCTCTGTAAA 57.420 34.615 0.00 0.00 0.00 2.01
3621 4060 8.579850 TTCGTAATTTAGTACTCCCTCTGTAA 57.420 34.615 0.00 0.00 0.00 2.41
3622 4061 8.757982 ATTCGTAATTTAGTACTCCCTCTGTA 57.242 34.615 0.00 0.00 0.00 2.74
3623 4062 7.657023 ATTCGTAATTTAGTACTCCCTCTGT 57.343 36.000 0.00 0.00 0.00 3.41
3624 4063 8.818057 CAAATTCGTAATTTAGTACTCCCTCTG 58.182 37.037 0.00 0.00 38.97 3.35
3625 4064 7.985752 CCAAATTCGTAATTTAGTACTCCCTCT 59.014 37.037 0.00 0.00 38.97 3.69
3626 4065 7.983484 TCCAAATTCGTAATTTAGTACTCCCTC 59.017 37.037 0.00 0.00 38.97 4.30
3627 4066 7.854337 TCCAAATTCGTAATTTAGTACTCCCT 58.146 34.615 0.00 0.00 38.97 4.20
3628 4067 8.672823 ATCCAAATTCGTAATTTAGTACTCCC 57.327 34.615 0.00 0.00 38.97 4.30
3648 4087 2.173356 AGGCAGCTGTAGCATTATCCAA 59.827 45.455 16.64 0.00 45.16 3.53
3649 4088 1.770658 AGGCAGCTGTAGCATTATCCA 59.229 47.619 16.64 0.00 45.16 3.41
3650 4089 2.557920 AGGCAGCTGTAGCATTATCC 57.442 50.000 16.64 4.27 45.16 2.59
3653 4092 4.963318 AGATAAGGCAGCTGTAGCATTA 57.037 40.909 16.64 9.78 45.16 1.90
3654 4093 3.853355 AGATAAGGCAGCTGTAGCATT 57.147 42.857 16.64 7.64 45.16 3.56
3655 4094 3.474600 CAAGATAAGGCAGCTGTAGCAT 58.525 45.455 16.64 4.17 45.16 3.79
3656 4095 2.910199 CAAGATAAGGCAGCTGTAGCA 58.090 47.619 16.64 0.00 45.16 3.49
3657 4096 1.601430 GCAAGATAAGGCAGCTGTAGC 59.399 52.381 16.64 2.57 42.49 3.58
3658 4097 2.158842 AGGCAAGATAAGGCAGCTGTAG 60.159 50.000 16.64 0.00 0.00 2.74
3659 4098 1.839994 AGGCAAGATAAGGCAGCTGTA 59.160 47.619 16.64 0.00 0.00 2.74
3660 4099 0.622665 AGGCAAGATAAGGCAGCTGT 59.377 50.000 16.64 0.00 0.00 4.40
3661 4100 1.760192 AAGGCAAGATAAGGCAGCTG 58.240 50.000 10.11 10.11 0.00 4.24
3662 4101 2.521547 AAAGGCAAGATAAGGCAGCT 57.478 45.000 0.00 0.00 0.00 4.24
3663 4102 3.696548 AGTAAAAGGCAAGATAAGGCAGC 59.303 43.478 0.00 0.00 0.00 5.25
3664 4103 5.904362 AAGTAAAAGGCAAGATAAGGCAG 57.096 39.130 0.00 0.00 0.00 4.85
3665 4104 7.954666 AATAAGTAAAAGGCAAGATAAGGCA 57.045 32.000 0.00 0.00 0.00 4.75
3666 4105 9.087424 CAAAATAAGTAAAAGGCAAGATAAGGC 57.913 33.333 0.00 0.00 0.00 4.35
3667 4106 9.087424 GCAAAATAAGTAAAAGGCAAGATAAGG 57.913 33.333 0.00 0.00 0.00 2.69
3676 4115 5.868257 GCAATGGCAAAATAAGTAAAAGGC 58.132 37.500 0.00 0.00 40.72 4.35
3744 4185 9.161629 TCTGAATTTCAAGCGATATTTACAGAA 57.838 29.630 0.01 0.00 29.03 3.02
3746 4187 9.378597 CATCTGAATTTCAAGCGATATTTACAG 57.621 33.333 0.01 0.00 0.00 2.74
3783 4224 5.454471 CCCTGAACCTCATCTCTGAATTAGG 60.454 48.000 0.00 0.00 0.00 2.69
3784 4225 5.609423 CCCTGAACCTCATCTCTGAATTAG 58.391 45.833 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.