Multiple sequence alignment - TraesCS5D01G093700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G093700 chr5D 100.000 6224 0 0 1 6224 102516591 102522814 0.000000e+00 11494.0
1 TraesCS5D01G093700 chr5B 96.214 3962 86 19 1815 5762 112185884 112189795 0.000000e+00 6427.0
2 TraesCS5D01G093700 chr5B 95.620 1210 27 6 631 1822 112180511 112181712 0.000000e+00 1917.0
3 TraesCS5D01G093700 chr5B 95.000 60 3 0 2424 2483 112186337 112186278 1.850000e-15 95.3
4 TraesCS5D01G093700 chr5A 95.762 3846 115 16 2284 6097 96428553 96424724 0.000000e+00 6156.0
5 TraesCS5D01G093700 chr5A 92.297 2194 121 16 157 2303 96430765 96428573 0.000000e+00 3072.0
6 TraesCS5D01G093700 chr5A 96.667 60 2 0 2424 2483 96428608 96428667 3.970000e-17 100.0
7 TraesCS5D01G093700 chr7D 87.664 608 47 9 2480 3076 369457671 369457081 0.000000e+00 682.0
8 TraesCS5D01G093700 chr7D 84.355 620 62 18 2480 3083 305132397 305131797 5.410000e-160 575.0
9 TraesCS5D01G093700 chr7D 86.182 275 35 1 2480 2751 471545016 471544742 1.700000e-75 294.0
10 TraesCS5D01G093700 chr7D 94.915 177 7 2 1 177 187347818 187347644 6.150000e-70 276.0
11 TraesCS5D01G093700 chr7D 94.444 108 5 1 2311 2417 175941706 175941813 1.390000e-36 165.0
12 TraesCS5D01G093700 chr7D 94.393 107 5 1 2311 2416 236827487 236827381 4.990000e-36 163.0
13 TraesCS5D01G093700 chr7D 82.822 163 24 4 266 426 319884261 319884421 6.500000e-30 143.0
14 TraesCS5D01G093700 chr7D 82.609 161 26 2 266 425 380644559 380644400 2.340000e-29 141.0
15 TraesCS5D01G093700 chr7D 77.500 200 33 7 212 410 268188698 268188510 6.600000e-20 110.0
16 TraesCS5D01G093700 chr2A 87.561 611 48 10 2480 3076 515951993 515952589 0.000000e+00 682.0
17 TraesCS5D01G093700 chr2B 87.171 608 51 11 2480 3076 451827389 451827980 0.000000e+00 665.0
18 TraesCS5D01G093700 chr2B 84.277 159 23 2 268 425 79849282 79849125 3.000000e-33 154.0
19 TraesCS5D01G093700 chr3D 86.513 608 56 10 2480 3076 182651295 182650703 0.000000e+00 645.0
20 TraesCS5D01G093700 chr3D 98.182 165 2 1 1 164 94387894 94388058 2.840000e-73 287.0
21 TraesCS5D01G093700 chr3D 92.982 171 11 1 2907 3076 290589520 290589350 1.340000e-61 248.0
22 TraesCS5D01G093700 chr3D 82.609 161 26 2 266 425 121770930 121770771 2.340000e-29 141.0
23 TraesCS5D01G093700 chr3D 82.609 161 26 2 266 425 121834418 121834259 2.340000e-29 141.0
24 TraesCS5D01G093700 chr3B 86.535 609 53 13 2480 3074 424127776 424128369 1.460000e-180 643.0
25 TraesCS5D01G093700 chr3B 83.502 594 73 10 2480 3059 482411313 482411895 1.190000e-146 531.0
26 TraesCS5D01G093700 chr3B 90.244 123 9 3 2316 2437 341950181 341950061 2.320000e-34 158.0
27 TraesCS5D01G093700 chr4A 85.855 608 61 11 2480 3076 242895724 242896317 1.910000e-174 623.0
28 TraesCS5D01G093700 chr4A 93.989 183 8 3 1 180 595034539 595034721 2.210000e-69 274.0
29 TraesCS5D01G093700 chr4A 92.793 111 7 1 2311 2420 215140003 215139893 6.460000e-35 159.0
30 TraesCS5D01G093700 chr6A 85.382 602 68 9 2480 3076 231611794 231611208 1.920000e-169 606.0
31 TraesCS5D01G093700 chr6A 96.988 166 3 1 1 166 153692612 153692775 1.710000e-70 278.0
32 TraesCS5D01G093700 chr6A 95.429 175 6 2 1 173 282414828 282414654 1.710000e-70 278.0
33 TraesCS5D01G093700 chr7A 83.500 600 80 9 2480 3076 195409433 195408850 5.490000e-150 542.0
34 TraesCS5D01G093700 chr7A 89.916 119 10 2 2316 2433 206958833 206958950 1.080000e-32 152.0
35 TraesCS5D01G093700 chr3A 83.250 400 53 7 2482 2876 164414702 164415092 7.670000e-94 355.0
36 TraesCS5D01G093700 chr3A 82.587 402 54 8 2482 2876 143675506 143675898 2.150000e-89 340.0
37 TraesCS5D01G093700 chr4D 85.479 303 31 9 1 299 313129398 313129105 2.820000e-78 303.0
38 TraesCS5D01G093700 chr4D 97.024 168 4 1 1 168 439057380 439057214 1.320000e-71 281.0
39 TraesCS5D01G093700 chr4D 90.769 130 12 0 201 330 169246675 169246804 2.310000e-39 174.0
40 TraesCS5D01G093700 chr4D 88.971 136 15 0 195 330 271259980 271260115 1.070000e-37 169.0
41 TraesCS5D01G093700 chr4D 82.143 168 28 2 266 432 267593908 267593742 6.500000e-30 143.0
42 TraesCS5D01G093700 chr4D 82.143 168 29 1 266 432 499048804 499048971 6.500000e-30 143.0
43 TraesCS5D01G093700 chr6D 88.186 237 22 5 2480 2715 150157308 150157539 1.710000e-70 278.0
44 TraesCS5D01G093700 chr6D 100.000 28 0 0 212 239 333078698 333078725 1.100000e-02 52.8
45 TraesCS5D01G093700 chr2D 94.444 180 8 2 1 178 587754829 587755008 6.150000e-70 276.0
46 TraesCS5D01G093700 chr2D 93.989 183 8 3 1 180 373071112 373070930 2.210000e-69 274.0
47 TraesCS5D01G093700 chr2D 93.519 108 6 1 2311 2417 98988178 98988071 6.460000e-35 159.0
48 TraesCS5D01G093700 chr7B 80.632 253 47 2 157 409 498135253 498135503 1.770000e-45 195.0
49 TraesCS5D01G093700 chr7B 88.462 130 11 4 2316 2441 531650823 531650694 3.000000e-33 154.0
50 TraesCS5D01G093700 chr4B 88.462 130 15 0 201 330 647089228 647089357 2.320000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G093700 chr5D 102516591 102522814 6223 False 11494 11494 100.0000 1 6224 1 chr5D.!!$F1 6223
1 TraesCS5D01G093700 chr5B 112185884 112189795 3911 False 6427 6427 96.2140 1815 5762 1 chr5B.!!$F2 3947
2 TraesCS5D01G093700 chr5B 112180511 112181712 1201 False 1917 1917 95.6200 631 1822 1 chr5B.!!$F1 1191
3 TraesCS5D01G093700 chr5A 96424724 96430765 6041 True 4614 6156 94.0295 157 6097 2 chr5A.!!$R1 5940
4 TraesCS5D01G093700 chr7D 369457081 369457671 590 True 682 682 87.6640 2480 3076 1 chr7D.!!$R5 596
5 TraesCS5D01G093700 chr7D 305131797 305132397 600 True 575 575 84.3550 2480 3083 1 chr7D.!!$R4 603
6 TraesCS5D01G093700 chr2A 515951993 515952589 596 False 682 682 87.5610 2480 3076 1 chr2A.!!$F1 596
7 TraesCS5D01G093700 chr2B 451827389 451827980 591 False 665 665 87.1710 2480 3076 1 chr2B.!!$F1 596
8 TraesCS5D01G093700 chr3D 182650703 182651295 592 True 645 645 86.5130 2480 3076 1 chr3D.!!$R3 596
9 TraesCS5D01G093700 chr3B 424127776 424128369 593 False 643 643 86.5350 2480 3074 1 chr3B.!!$F1 594
10 TraesCS5D01G093700 chr3B 482411313 482411895 582 False 531 531 83.5020 2480 3059 1 chr3B.!!$F2 579
11 TraesCS5D01G093700 chr4A 242895724 242896317 593 False 623 623 85.8550 2480 3076 1 chr4A.!!$F1 596
12 TraesCS5D01G093700 chr6A 231611208 231611794 586 True 606 606 85.3820 2480 3076 1 chr6A.!!$R1 596
13 TraesCS5D01G093700 chr7A 195408850 195409433 583 True 542 542 83.5000 2480 3076 1 chr7A.!!$R1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 327 0.179084 CCGGGCATGAATACGACACT 60.179 55.000 0.00 0.00 0.00 3.55 F
569 577 0.179092 GTATCCCGGTCGTTTGAGGG 60.179 60.000 0.00 0.00 45.10 4.30 F
940 950 1.751437 GCTCTTCCCCGCAATTTACT 58.249 50.000 0.00 0.00 0.00 2.24 F
1892 1937 1.267261 CGTCTGTTCTCCTTCTCGTGT 59.733 52.381 0.00 0.00 0.00 4.49 F
2202 2251 2.382882 TGTGCCACATGTTTCCTTTCA 58.617 42.857 0.00 0.00 0.00 2.69 F
2833 2941 2.426381 GCCTAGTAGTACTGAAACCGCT 59.574 50.000 13.29 0.00 0.00 5.52 F
3951 4069 1.134670 GCTACTGGCCAGGTGAACTAG 60.135 57.143 35.42 25.36 34.27 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 1502 0.322546 ATCAGAAGCCCCGTGTTTCC 60.323 55.000 0.00 0.0 34.96 3.13 R
1492 1509 1.153086 CCAAGGATCAGAAGCCCCG 60.153 63.158 0.00 0.0 0.00 5.73 R
2800 2905 1.141254 CTACTAGGCACGAGGAGGAGA 59.859 57.143 0.00 0.0 38.43 3.71 R
3366 3484 4.935205 CCAGTTCATTGTATGGAAAGTCGA 59.065 41.667 0.00 0.0 34.60 4.20 R
3951 4069 9.677567 TTGCATTAGAGTTTAGTTGACAAATTC 57.322 29.630 0.00 0.0 0.00 2.17 R
4339 4457 1.341285 ACCAGCCTCAGCAATGCATAA 60.341 47.619 8.35 0.0 43.56 1.90 R
5282 5403 0.034186 TGGCATGATTGACTCCCACC 60.034 55.000 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.838531 AAGTAGAGGCATACTAGTGACAC 57.161 43.478 5.39 0.00 34.90 3.67
23 24 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
24 25 5.127491 AGTAGAGGCATACTAGTGACACTC 58.873 45.833 12.39 8.31 34.21 3.51
25 26 4.243793 AGAGGCATACTAGTGACACTCT 57.756 45.455 12.39 10.40 0.00 3.24
26 27 3.951037 AGAGGCATACTAGTGACACTCTG 59.049 47.826 12.39 9.04 33.23 3.35
27 28 3.697045 GAGGCATACTAGTGACACTCTGT 59.303 47.826 12.39 14.35 0.00 3.41
28 29 4.090090 AGGCATACTAGTGACACTCTGTT 58.910 43.478 12.39 0.00 0.00 3.16
29 30 4.528596 AGGCATACTAGTGACACTCTGTTT 59.471 41.667 12.39 5.23 0.00 2.83
30 31 4.627467 GGCATACTAGTGACACTCTGTTTG 59.373 45.833 12.39 16.63 0.00 2.93
31 32 5.230942 GCATACTAGTGACACTCTGTTTGT 58.769 41.667 12.39 5.61 0.00 2.83
32 33 5.346281 GCATACTAGTGACACTCTGTTTGTC 59.654 44.000 12.39 9.81 43.22 3.18
33 34 6.682746 CATACTAGTGACACTCTGTTTGTCT 58.317 40.000 12.39 0.00 43.30 3.41
34 35 7.575155 GCATACTAGTGACACTCTGTTTGTCTA 60.575 40.741 12.39 0.00 43.30 2.59
35 36 6.902771 ACTAGTGACACTCTGTTTGTCTAT 57.097 37.500 12.39 0.00 43.30 1.98
36 37 6.682746 ACTAGTGACACTCTGTTTGTCTATG 58.317 40.000 12.39 0.00 43.30 2.23
37 38 5.537300 AGTGACACTCTGTTTGTCTATGT 57.463 39.130 1.07 0.00 43.30 2.29
38 39 6.650427 AGTGACACTCTGTTTGTCTATGTA 57.350 37.500 1.07 0.00 43.30 2.29
39 40 7.233389 AGTGACACTCTGTTTGTCTATGTAT 57.767 36.000 1.07 0.00 43.30 2.29
40 41 7.671302 AGTGACACTCTGTTTGTCTATGTATT 58.329 34.615 1.07 0.00 43.30 1.89
41 42 7.815068 AGTGACACTCTGTTTGTCTATGTATTC 59.185 37.037 1.07 0.00 43.30 1.75
42 43 7.598869 GTGACACTCTGTTTGTCTATGTATTCA 59.401 37.037 0.00 0.00 43.30 2.57
43 44 7.598869 TGACACTCTGTTTGTCTATGTATTCAC 59.401 37.037 11.01 0.00 43.30 3.18
44 45 7.441836 ACACTCTGTTTGTCTATGTATTCACA 58.558 34.615 0.00 0.00 39.52 3.58
45 46 7.385205 ACACTCTGTTTGTCTATGTATTCACAC 59.615 37.037 0.00 0.00 37.54 3.82
46 47 7.384932 CACTCTGTTTGTCTATGTATTCACACA 59.615 37.037 0.00 0.00 37.54 3.72
47 48 8.097038 ACTCTGTTTGTCTATGTATTCACACAT 58.903 33.333 0.00 0.00 41.88 3.21
48 49 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
49 50 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
50 51 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
51 52 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
53 54 9.883142 TTTGTCTATGTATTCACACATGTATCA 57.117 29.630 0.00 0.00 39.46 2.15
55 56 9.480053 TGTCTATGTATTCACACATGTATCATG 57.520 33.333 0.00 7.99 39.46 3.07
56 57 9.481340 GTCTATGTATTCACACATGTATCATGT 57.519 33.333 9.21 9.21 39.46 3.21
60 61 7.984391 TGTATTCACACATGTATCATGTTTCC 58.016 34.615 11.89 0.00 0.00 3.13
61 62 5.544136 TTCACACATGTATCATGTTTCCG 57.456 39.130 11.89 4.94 0.00 4.30
62 63 3.938334 TCACACATGTATCATGTTTCCGG 59.062 43.478 11.89 0.00 0.00 5.14
63 64 3.689161 CACACATGTATCATGTTTCCGGT 59.311 43.478 11.89 5.17 0.00 5.28
64 65 4.155826 CACACATGTATCATGTTTCCGGTT 59.844 41.667 11.89 0.00 0.00 4.44
65 66 5.352846 CACACATGTATCATGTTTCCGGTTA 59.647 40.000 11.89 0.00 0.00 2.85
66 67 5.941058 ACACATGTATCATGTTTCCGGTTAA 59.059 36.000 11.89 0.00 0.00 2.01
67 68 6.601613 ACACATGTATCATGTTTCCGGTTAAT 59.398 34.615 11.89 0.00 0.00 1.40
68 69 7.771361 ACACATGTATCATGTTTCCGGTTAATA 59.229 33.333 11.89 0.00 0.00 0.98
69 70 8.067784 CACATGTATCATGTTTCCGGTTAATAC 58.932 37.037 11.89 2.60 0.00 1.89
70 71 7.771361 ACATGTATCATGTTTCCGGTTAATACA 59.229 33.333 0.00 7.97 34.10 2.29
71 72 8.616942 CATGTATCATGTTTCCGGTTAATACAA 58.383 33.333 0.00 0.00 33.52 2.41
72 73 8.740123 TGTATCATGTTTCCGGTTAATACAAT 57.260 30.769 0.00 0.00 0.00 2.71
73 74 9.179909 TGTATCATGTTTCCGGTTAATACAATT 57.820 29.630 0.00 0.00 0.00 2.32
74 75 9.659830 GTATCATGTTTCCGGTTAATACAATTC 57.340 33.333 0.00 0.00 0.00 2.17
75 76 7.931578 TCATGTTTCCGGTTAATACAATTCT 57.068 32.000 0.00 0.00 0.00 2.40
76 77 9.621629 ATCATGTTTCCGGTTAATACAATTCTA 57.378 29.630 0.00 0.00 0.00 2.10
77 78 9.104965 TCATGTTTCCGGTTAATACAATTCTAG 57.895 33.333 0.00 0.00 0.00 2.43
78 79 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
79 80 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
80 81 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
81 82 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
82 83 6.822442 TCCGGTTAATACAATTCTAGCATGA 58.178 36.000 0.00 0.00 0.00 3.07
83 84 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
84 85 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
85 86 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
143 144 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
155 156 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
169 170 2.374184 TCCTTCAATTAATGTGGGCGG 58.626 47.619 0.00 0.00 0.00 6.13
170 171 1.408702 CCTTCAATTAATGTGGGCGGG 59.591 52.381 0.00 0.00 0.00 6.13
182 183 2.732619 GGGCGGGAGAAGGACGAAT 61.733 63.158 0.00 0.00 0.00 3.34
190 191 1.749258 GAAGGACGAATGGGTGGCC 60.749 63.158 0.00 0.00 0.00 5.36
218 219 2.220824 TCGTTTGAACATGAAGCAGTCG 59.779 45.455 0.00 3.80 0.00 4.18
226 227 3.337889 GAAGCAGTCGCGTGCACA 61.338 61.111 21.73 0.00 46.60 4.57
322 323 2.110213 GGCCGGGCATGAATACGA 59.890 61.111 25.33 0.00 0.00 3.43
326 327 0.179084 CCGGGCATGAATACGACACT 60.179 55.000 0.00 0.00 0.00 3.55
329 330 1.933853 GGGCATGAATACGACACTGAC 59.066 52.381 0.00 0.00 0.00 3.51
330 331 2.616960 GGCATGAATACGACACTGACA 58.383 47.619 0.00 0.00 0.00 3.58
365 366 4.050934 CCGTTTTGGGCGGGAAGC 62.051 66.667 0.00 0.00 44.98 3.86
392 393 2.345991 CGAGGAAGCGGGTTTGGA 59.654 61.111 0.00 0.00 0.00 3.53
402 403 1.000359 GGGTTTGGATGGGTCAGGG 60.000 63.158 0.00 0.00 0.00 4.45
405 406 2.227757 TTTGGATGGGTCAGGGCGA 61.228 57.895 0.00 0.00 0.00 5.54
410 411 2.388890 GATGGGTCAGGGCGATCAGG 62.389 65.000 0.00 0.00 0.00 3.86
411 412 4.554036 GGGTCAGGGCGATCAGGC 62.554 72.222 0.00 0.00 45.91 4.85
425 431 3.640407 AGGCATCGGTGTGGCAGT 61.640 61.111 0.00 0.00 46.19 4.40
426 432 2.267642 GGCATCGGTGTGGCAGTA 59.732 61.111 0.00 0.00 43.52 2.74
444 450 2.501223 TAGCCCGGACGTCAGCAAAG 62.501 60.000 18.91 3.60 0.00 2.77
447 453 3.423154 CGGACGTCAGCAAAGCCC 61.423 66.667 18.91 0.00 0.00 5.19
448 454 2.032681 GGACGTCAGCAAAGCCCT 59.967 61.111 18.91 0.00 0.00 5.19
449 455 1.295423 GGACGTCAGCAAAGCCCTA 59.705 57.895 18.91 0.00 0.00 3.53
467 473 2.288825 CCTAGTCTGACTTCGGTTTGCA 60.289 50.000 16.53 0.00 0.00 4.08
468 474 2.325583 AGTCTGACTTCGGTTTGCAA 57.674 45.000 4.06 0.00 0.00 4.08
504 512 2.173669 CGCCTGCGGACCAATACAG 61.174 63.158 3.07 0.00 35.56 2.74
507 515 1.747206 GCCTGCGGACCAATACAGATT 60.747 52.381 0.00 0.00 31.67 2.40
510 518 0.582005 GCGGACCAATACAGATTCGC 59.418 55.000 0.00 0.00 30.50 4.70
516 524 2.006888 CCAATACAGATTCGCGTTGGT 58.993 47.619 5.77 1.35 33.25 3.67
520 528 4.852609 ATACAGATTCGCGTTGGTTAAC 57.147 40.909 5.77 0.00 0.00 2.01
523 531 3.562557 ACAGATTCGCGTTGGTTAACTTT 59.437 39.130 5.77 0.00 34.60 2.66
527 535 1.522258 TCGCGTTGGTTAACTTTCGTC 59.478 47.619 5.77 4.19 34.60 4.20
528 536 1.258458 CGCGTTGGTTAACTTTCGTCA 59.742 47.619 5.42 0.00 34.60 4.35
533 541 4.377022 CGTTGGTTAACTTTCGTCATCTGG 60.377 45.833 5.42 0.00 34.60 3.86
535 543 4.312443 TGGTTAACTTTCGTCATCTGGAC 58.688 43.478 5.42 0.00 43.36 4.02
545 553 2.133553 GTCATCTGGACAGCATGATCG 58.866 52.381 0.00 0.00 46.19 3.69
549 557 0.531532 CTGGACAGCATGATCGGGAC 60.532 60.000 0.00 0.00 39.69 4.46
569 577 0.179092 GTATCCCGGTCGTTTGAGGG 60.179 60.000 0.00 0.00 45.10 4.30
572 580 2.738480 CCGGTCGTTTGAGGGTGA 59.262 61.111 0.00 0.00 0.00 4.02
579 587 2.110213 TTTGAGGGTGAGCGCGTT 59.890 55.556 8.43 0.00 0.00 4.84
624 633 9.608617 AACATGACGTAGAACTATAATATCACG 57.391 33.333 0.00 0.00 0.00 4.35
627 636 7.516481 TGACGTAGAACTATAATATCACGCTC 58.484 38.462 0.00 0.00 0.00 5.03
747 756 7.386851 CAGGATAAATAGTCCATAACCATCGT 58.613 38.462 0.00 0.00 38.25 3.73
940 950 1.751437 GCTCTTCCCCGCAATTTACT 58.249 50.000 0.00 0.00 0.00 2.24
1308 1318 2.761208 CAGGATCTCTTTGGTACGTCCT 59.239 50.000 0.00 0.00 35.09 3.85
1421 1431 9.683069 GCTTGTATTCTTGATATTTTACATGGG 57.317 33.333 0.00 0.00 0.00 4.00
1657 1685 5.059833 GGTCTTAGGATGATCATGGTGTTC 58.940 45.833 14.30 0.00 0.00 3.18
1784 1829 4.142116 CGTTTAAGTCCTTGGTTGGGTTTT 60.142 41.667 0.00 0.00 0.00 2.43
1892 1937 1.267261 CGTCTGTTCTCCTTCTCGTGT 59.733 52.381 0.00 0.00 0.00 4.49
2060 2109 4.621034 CGTGAATTGTTATTTTGCTGTCCC 59.379 41.667 0.00 0.00 0.00 4.46
2079 2128 6.843752 TGTCCCTTTCCTACATGTTTTCTTA 58.156 36.000 2.30 0.00 0.00 2.10
2178 2227 7.067372 TGGATATGAAGTTTATTGAGTGCCTTG 59.933 37.037 0.00 0.00 0.00 3.61
2202 2251 2.382882 TGTGCCACATGTTTCCTTTCA 58.617 42.857 0.00 0.00 0.00 2.69
2219 2268 7.466746 TCCTTTCAAATTGTGATTCTAAGGG 57.533 36.000 5.55 0.00 35.70 3.95
2417 2505 6.983890 ACTAAAGGCTTTGTTATTGTTGTTGG 59.016 34.615 22.32 0.00 0.00 3.77
2678 2778 2.753043 CCAGAAGCTTGGCGCCAT 60.753 61.111 33.25 16.51 40.39 4.40
2800 2905 3.525199 ACCACCTTCAGATCAAGGCTAAT 59.475 43.478 10.94 0.00 46.34 1.73
2833 2941 2.426381 GCCTAGTAGTACTGAAACCGCT 59.574 50.000 13.29 0.00 0.00 5.52
2855 2963 5.808030 GCTCCTCATGTACTCAGTTTTAGTC 59.192 44.000 0.00 0.00 0.00 2.59
2857 2965 5.778241 TCCTCATGTACTCAGTTTTAGTCCA 59.222 40.000 0.00 0.00 0.00 4.02
2907 3015 7.361286 CCAAAGTTTGTCTTCATAGCTCTAACC 60.361 40.741 14.36 0.00 35.02 2.85
2908 3016 6.613153 AGTTTGTCTTCATAGCTCTAACCT 57.387 37.500 0.00 0.00 0.00 3.50
2909 3017 6.635755 AGTTTGTCTTCATAGCTCTAACCTC 58.364 40.000 0.00 0.00 0.00 3.85
2910 3018 6.211584 AGTTTGTCTTCATAGCTCTAACCTCA 59.788 38.462 0.00 0.00 0.00 3.86
2911 3019 6.798427 TTGTCTTCATAGCTCTAACCTCAT 57.202 37.500 0.00 0.00 0.00 2.90
2912 3020 7.898014 TTGTCTTCATAGCTCTAACCTCATA 57.102 36.000 0.00 0.00 0.00 2.15
2913 3021 7.517614 TGTCTTCATAGCTCTAACCTCATAG 57.482 40.000 0.00 0.00 0.00 2.23
2914 3022 6.015856 TGTCTTCATAGCTCTAACCTCATAGC 60.016 42.308 0.00 0.00 35.16 2.97
2915 3023 6.208599 GTCTTCATAGCTCTAACCTCATAGCT 59.791 42.308 0.00 0.00 46.58 3.32
2916 3024 6.432783 TCTTCATAGCTCTAACCTCATAGCTC 59.567 42.308 0.00 0.00 43.96 4.09
2917 3025 5.886609 TCATAGCTCTAACCTCATAGCTCT 58.113 41.667 0.00 0.00 43.96 4.09
2918 3026 7.021998 TCATAGCTCTAACCTCATAGCTCTA 57.978 40.000 0.00 0.00 43.96 2.43
2919 3027 7.462590 TCATAGCTCTAACCTCATAGCTCTAA 58.537 38.462 0.00 0.00 43.96 2.10
2920 3028 7.392113 TCATAGCTCTAACCTCATAGCTCTAAC 59.608 40.741 0.00 0.00 43.96 2.34
3151 3267 4.619973 TGATGTTGTCATTTTGCCACTTC 58.380 39.130 0.00 0.00 34.06 3.01
3157 3273 5.596836 TGTCATTTTGCCACTTCTTTCTT 57.403 34.783 0.00 0.00 0.00 2.52
3187 3303 9.699410 TCCTTTTGACCTTTGAATATATCATGT 57.301 29.630 0.00 0.00 38.03 3.21
3951 4069 1.134670 GCTACTGGCCAGGTGAACTAG 60.135 57.143 35.42 25.36 34.27 2.57
3985 4103 9.334693 CAACTAAACTCTAATGCAATTTCAGTC 57.665 33.333 0.00 0.00 37.87 3.51
4339 4457 3.650369 GGAACGCACACAACCGAT 58.350 55.556 0.00 0.00 0.00 4.18
5137 5255 3.520402 CCACCGTGGCACAAGTTT 58.480 55.556 19.09 0.00 44.16 2.66
5151 5269 2.037367 GTTTTCCCTCAGGCCCCC 59.963 66.667 0.00 0.00 0.00 5.40
5190 5308 2.887152 GGAAATCCCCGATCAATTGGAG 59.113 50.000 5.42 0.00 32.77 3.86
5241 5359 6.989759 TGTTATGAATACAGTGCCGATATTGT 59.010 34.615 0.00 0.00 0.00 2.71
5282 5403 0.306840 TCCGTTCGATACTAGCGCAG 59.693 55.000 11.47 7.81 0.00 5.18
5317 5438 3.179443 TGCCAACCGAGAGATGTAATC 57.821 47.619 0.00 0.00 46.04 1.75
5789 5919 3.092301 CTGCATAGACGAGATATGGGGA 58.908 50.000 0.00 0.00 32.35 4.81
5793 5923 5.013079 TGCATAGACGAGATATGGGGAAAAT 59.987 40.000 0.00 0.00 32.35 1.82
5796 5926 7.439655 GCATAGACGAGATATGGGGAAAATATC 59.560 40.741 0.00 0.00 37.30 1.63
5895 6031 4.017126 GGAGTACCTTGGAAAATGAAGGG 58.983 47.826 0.00 0.00 42.79 3.95
5898 6034 1.203001 ACCTTGGAAAATGAAGGGCGA 60.203 47.619 0.00 0.00 42.79 5.54
5912 6048 0.948623 GGGCGAAAATGGTGTTTGCC 60.949 55.000 6.84 6.84 35.60 4.52
5913 6049 0.249657 GGCGAAAATGGTGTTTGCCA 60.250 50.000 10.00 0.00 43.48 4.92
5962 6098 8.998814 TCCTTGGTAATATGAAAGAATCTACCA 58.001 33.333 0.00 0.00 33.78 3.25
5995 6131 1.139853 CGCCCTTCTAATCCTGAGCTT 59.860 52.381 0.00 0.00 0.00 3.74
5996 6132 2.570135 GCCCTTCTAATCCTGAGCTTG 58.430 52.381 0.00 0.00 0.00 4.01
6002 6138 1.936547 CTAATCCTGAGCTTGAACGCC 59.063 52.381 0.00 0.00 0.00 5.68
6020 6160 3.880490 ACGCCATGAACAGTAAAAACTGA 59.120 39.130 12.23 0.00 39.99 3.41
6062 6202 9.862371 TGAACATTGCTTAGTTTTCTTTTTACA 57.138 25.926 0.00 0.00 0.00 2.41
6077 6217 8.612233 TTCTTTTTACATGCAAATTTTTGTGC 57.388 26.923 0.00 1.52 40.24 4.57
6086 6226 6.621316 TGCAAATTTTTGTGCTGAAATCAT 57.379 29.167 5.05 0.00 41.48 2.45
6097 6237 5.591472 TGTGCTGAAATCATATTCCTGAAGG 59.409 40.000 0.00 0.00 0.00 3.46
6098 6238 5.591877 GTGCTGAAATCATATTCCTGAAGGT 59.408 40.000 0.00 0.00 36.34 3.50
6099 6239 6.096001 GTGCTGAAATCATATTCCTGAAGGTT 59.904 38.462 0.00 0.00 36.34 3.50
6100 6240 6.664816 TGCTGAAATCATATTCCTGAAGGTTT 59.335 34.615 0.00 0.00 36.34 3.27
6101 6241 6.976925 GCTGAAATCATATTCCTGAAGGTTTG 59.023 38.462 0.00 0.00 36.34 2.93
6102 6242 7.408756 TGAAATCATATTCCTGAAGGTTTGG 57.591 36.000 0.00 0.00 36.34 3.28
6103 6243 6.380846 TGAAATCATATTCCTGAAGGTTTGGG 59.619 38.462 0.00 0.00 36.34 4.12
6104 6244 3.631250 TCATATTCCTGAAGGTTTGGGC 58.369 45.455 0.00 0.00 36.34 5.36
6105 6245 3.011144 TCATATTCCTGAAGGTTTGGGCA 59.989 43.478 0.00 0.00 36.34 5.36
6106 6246 2.397044 ATTCCTGAAGGTTTGGGCAA 57.603 45.000 0.00 0.00 36.34 4.52
6107 6247 2.166907 TTCCTGAAGGTTTGGGCAAA 57.833 45.000 0.00 0.00 36.34 3.68
6108 6248 2.166907 TCCTGAAGGTTTGGGCAAAA 57.833 45.000 0.00 0.00 36.34 2.44
6109 6249 2.472029 TCCTGAAGGTTTGGGCAAAAA 58.528 42.857 0.00 0.00 36.34 1.94
6110 6250 3.044894 TCCTGAAGGTTTGGGCAAAAAT 58.955 40.909 0.00 0.00 36.34 1.82
6111 6251 4.227197 TCCTGAAGGTTTGGGCAAAAATA 58.773 39.130 0.00 0.00 36.34 1.40
6112 6252 4.656112 TCCTGAAGGTTTGGGCAAAAATAA 59.344 37.500 0.00 0.00 36.34 1.40
6113 6253 4.754618 CCTGAAGGTTTGGGCAAAAATAAC 59.245 41.667 0.00 0.00 31.33 1.89
6114 6254 5.359194 TGAAGGTTTGGGCAAAAATAACA 57.641 34.783 0.00 0.00 31.33 2.41
6115 6255 5.745227 TGAAGGTTTGGGCAAAAATAACAA 58.255 33.333 0.00 0.00 31.33 2.83
6116 6256 6.180472 TGAAGGTTTGGGCAAAAATAACAAA 58.820 32.000 0.00 0.00 31.33 2.83
6117 6257 6.659242 TGAAGGTTTGGGCAAAAATAACAAAA 59.341 30.769 0.00 0.00 33.43 2.44
6118 6258 7.340487 TGAAGGTTTGGGCAAAAATAACAAAAT 59.660 29.630 0.00 0.00 33.43 1.82
6119 6259 7.036996 AGGTTTGGGCAAAAATAACAAAATG 57.963 32.000 0.00 0.00 33.43 2.32
6120 6260 6.040278 AGGTTTGGGCAAAAATAACAAAATGG 59.960 34.615 0.00 0.00 33.43 3.16
6121 6261 5.444663 TTGGGCAAAAATAACAAAATGGC 57.555 34.783 0.00 0.00 0.00 4.40
6122 6262 4.464008 TGGGCAAAAATAACAAAATGGCA 58.536 34.783 0.00 0.00 35.31 4.92
6123 6263 4.276926 TGGGCAAAAATAACAAAATGGCAC 59.723 37.500 0.00 0.00 35.31 5.01
6124 6264 4.518590 GGGCAAAAATAACAAAATGGCACT 59.481 37.500 0.00 0.00 35.31 4.40
6125 6265 5.334802 GGGCAAAAATAACAAAATGGCACTC 60.335 40.000 0.00 0.00 35.31 3.51
6126 6266 5.334802 GGCAAAAATAACAAAATGGCACTCC 60.335 40.000 0.00 0.00 33.98 3.85
6138 6278 3.940209 TGGCACTCCAAATGCTTTTAG 57.060 42.857 0.00 0.00 42.93 1.85
6139 6279 3.495331 TGGCACTCCAAATGCTTTTAGA 58.505 40.909 0.00 0.00 42.93 2.10
6140 6280 3.894427 TGGCACTCCAAATGCTTTTAGAA 59.106 39.130 0.00 0.00 42.93 2.10
6141 6281 4.022068 TGGCACTCCAAATGCTTTTAGAAG 60.022 41.667 0.00 0.00 42.93 2.85
6142 6282 4.021981 GGCACTCCAAATGCTTTTAGAAGT 60.022 41.667 0.00 0.00 42.93 3.01
6143 6283 5.183140 GGCACTCCAAATGCTTTTAGAAGTA 59.817 40.000 0.00 0.00 42.93 2.24
6144 6284 6.317857 GCACTCCAAATGCTTTTAGAAGTAG 58.682 40.000 0.00 0.53 40.08 2.57
6145 6285 6.072452 GCACTCCAAATGCTTTTAGAAGTAGT 60.072 38.462 0.00 0.00 40.08 2.73
6146 6286 7.522374 CACTCCAAATGCTTTTAGAAGTAGTC 58.478 38.462 0.00 0.00 35.25 2.59
6147 6287 7.389053 CACTCCAAATGCTTTTAGAAGTAGTCT 59.611 37.037 0.00 0.00 40.71 3.24
6148 6288 7.939588 ACTCCAAATGCTTTTAGAAGTAGTCTT 59.060 33.333 0.00 0.00 37.84 3.01
6149 6289 8.691661 TCCAAATGCTTTTAGAAGTAGTCTTT 57.308 30.769 0.00 0.00 37.84 2.52
6150 6290 9.131791 TCCAAATGCTTTTAGAAGTAGTCTTTT 57.868 29.630 0.00 0.00 37.84 2.27
6151 6291 9.750125 CCAAATGCTTTTAGAAGTAGTCTTTTT 57.250 29.630 0.00 0.00 37.84 1.94
6156 6296 8.557029 TGCTTTTAGAAGTAGTCTTTTTGTAGC 58.443 33.333 0.00 0.00 37.84 3.58
6157 6297 8.557029 GCTTTTAGAAGTAGTCTTTTTGTAGCA 58.443 33.333 0.00 0.00 37.84 3.49
6161 6301 9.772973 TTAGAAGTAGTCTTTTTGTAGCATTGA 57.227 29.630 0.00 0.00 37.84 2.57
6162 6302 8.854614 AGAAGTAGTCTTTTTGTAGCATTGAT 57.145 30.769 0.00 0.00 29.66 2.57
6163 6303 9.289782 AGAAGTAGTCTTTTTGTAGCATTGATT 57.710 29.630 0.00 0.00 29.66 2.57
6164 6304 9.899226 GAAGTAGTCTTTTTGTAGCATTGATTT 57.101 29.630 0.00 0.00 33.64 2.17
6181 6321 3.849064 TTTTTCCCACGGCACTGG 58.151 55.556 0.00 0.00 0.00 4.00
6182 6322 1.227664 TTTTTCCCACGGCACTGGA 59.772 52.632 0.37 0.00 32.30 3.86
6183 6323 0.395862 TTTTTCCCACGGCACTGGAA 60.396 50.000 0.37 0.00 36.40 3.53
6184 6324 0.178975 TTTTCCCACGGCACTGGAAT 60.179 50.000 0.37 0.00 37.95 3.01
6185 6325 0.893270 TTTCCCACGGCACTGGAATG 60.893 55.000 0.37 0.00 37.95 2.67
6186 6326 2.034066 CCCACGGCACTGGAATGT 59.966 61.111 0.37 0.00 32.30 2.71
6187 6327 2.334946 CCCACGGCACTGGAATGTG 61.335 63.158 0.37 0.00 40.62 3.21
6188 6328 1.600636 CCACGGCACTGGAATGTGT 60.601 57.895 0.00 0.00 39.89 3.72
6189 6329 1.172180 CCACGGCACTGGAATGTGTT 61.172 55.000 0.00 0.00 39.89 3.32
6190 6330 0.667993 CACGGCACTGGAATGTGTTT 59.332 50.000 0.00 0.00 39.89 2.83
6191 6331 1.066908 CACGGCACTGGAATGTGTTTT 59.933 47.619 0.00 0.00 39.89 2.43
6192 6332 1.336755 ACGGCACTGGAATGTGTTTTC 59.663 47.619 0.00 0.00 39.89 2.29
6193 6333 1.608590 CGGCACTGGAATGTGTTTTCT 59.391 47.619 0.00 0.00 39.89 2.52
6194 6334 2.034558 CGGCACTGGAATGTGTTTTCTT 59.965 45.455 0.00 0.00 39.89 2.52
6195 6335 3.642705 GGCACTGGAATGTGTTTTCTTC 58.357 45.455 0.00 0.00 39.89 2.87
6196 6336 3.068024 GGCACTGGAATGTGTTTTCTTCA 59.932 43.478 0.00 0.00 39.89 3.02
6197 6337 4.044426 GCACTGGAATGTGTTTTCTTCAC 58.956 43.478 0.00 0.00 39.89 3.18
6199 6339 5.276270 CACTGGAATGTGTTTTCTTCACAG 58.724 41.667 5.11 0.00 46.54 3.66
6200 6340 5.066375 CACTGGAATGTGTTTTCTTCACAGA 59.934 40.000 0.00 0.00 46.54 3.41
6201 6341 5.652014 ACTGGAATGTGTTTTCTTCACAGAA 59.348 36.000 0.00 0.00 46.54 3.02
6202 6342 6.152661 ACTGGAATGTGTTTTCTTCACAGAAA 59.847 34.615 0.00 0.00 46.54 2.52
6203 6343 7.111247 TGGAATGTGTTTTCTTCACAGAAAT 57.889 32.000 5.11 0.00 46.36 2.17
6204 6344 7.555087 TGGAATGTGTTTTCTTCACAGAAATT 58.445 30.769 5.11 0.00 46.36 1.82
6205 6345 8.040132 TGGAATGTGTTTTCTTCACAGAAATTT 58.960 29.630 5.11 0.00 46.36 1.82
6206 6346 8.330302 GGAATGTGTTTTCTTCACAGAAATTTG 58.670 33.333 0.00 0.00 46.36 2.32
6207 6347 6.645700 TGTGTTTTCTTCACAGAAATTTGC 57.354 33.333 0.00 0.00 46.36 3.68
6208 6348 6.162079 TGTGTTTTCTTCACAGAAATTTGCA 58.838 32.000 0.00 0.00 46.36 4.08
6209 6349 6.648310 TGTGTTTTCTTCACAGAAATTTGCAA 59.352 30.769 0.00 0.00 46.36 4.08
6210 6350 7.148606 TGTGTTTTCTTCACAGAAATTTGCAAG 60.149 33.333 0.00 0.00 46.36 4.01
6211 6351 6.873076 TGTTTTCTTCACAGAAATTTGCAAGT 59.127 30.769 0.00 0.00 46.36 3.16
6212 6352 7.063308 TGTTTTCTTCACAGAAATTTGCAAGTC 59.937 33.333 0.00 0.00 46.36 3.01
6213 6353 6.455360 TTCTTCACAGAAATTTGCAAGTCT 57.545 33.333 0.00 1.28 35.99 3.24
6214 6354 5.824429 TCTTCACAGAAATTTGCAAGTCTG 58.176 37.500 24.26 24.26 42.60 3.51
6216 6356 6.542005 TCTTCACAGAAATTTGCAAGTCTGTA 59.458 34.615 27.93 18.87 46.87 2.74
6217 6357 6.304356 TCACAGAAATTTGCAAGTCTGTAG 57.696 37.500 27.93 23.18 46.87 2.74
6218 6358 6.054941 TCACAGAAATTTGCAAGTCTGTAGA 58.945 36.000 27.93 24.30 46.87 2.59
6219 6359 6.542005 TCACAGAAATTTGCAAGTCTGTAGAA 59.458 34.615 27.93 19.06 46.87 2.10
6220 6360 6.634436 CACAGAAATTTGCAAGTCTGTAGAAC 59.366 38.462 27.93 6.02 46.87 3.01
6221 6361 6.318648 ACAGAAATTTGCAAGTCTGTAGAACA 59.681 34.615 27.59 1.87 46.76 3.18
6222 6362 7.013655 ACAGAAATTTGCAAGTCTGTAGAACAT 59.986 33.333 27.59 11.64 46.76 2.71
6223 6363 7.864379 CAGAAATTTGCAAGTCTGTAGAACATT 59.136 33.333 20.48 4.39 34.15 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
1 2 5.104277 AGAGTGTCACTAGTATGCCTCTACT 60.104 44.000 5.21 0.00 36.04 2.57
2 3 5.008217 CAGAGTGTCACTAGTATGCCTCTAC 59.992 48.000 5.21 0.00 0.00 2.59
3 4 5.126779 CAGAGTGTCACTAGTATGCCTCTA 58.873 45.833 5.21 0.00 0.00 2.43
4 5 3.951037 CAGAGTGTCACTAGTATGCCTCT 59.049 47.826 5.21 1.89 0.00 3.69
5 6 3.697045 ACAGAGTGTCACTAGTATGCCTC 59.303 47.826 5.21 0.00 0.00 4.70
6 7 3.702792 ACAGAGTGTCACTAGTATGCCT 58.297 45.455 5.21 0.00 0.00 4.75
7 8 4.457834 AACAGAGTGTCACTAGTATGCC 57.542 45.455 5.21 0.00 0.00 4.40
8 9 5.230942 ACAAACAGAGTGTCACTAGTATGC 58.769 41.667 5.21 0.00 0.00 3.14
9 10 6.682746 AGACAAACAGAGTGTCACTAGTATG 58.317 40.000 5.21 5.56 46.44 2.39
10 11 6.902771 AGACAAACAGAGTGTCACTAGTAT 57.097 37.500 5.21 0.00 46.44 2.12
11 12 7.447545 ACATAGACAAACAGAGTGTCACTAGTA 59.552 37.037 5.21 0.00 46.44 1.82
12 13 6.265649 ACATAGACAAACAGAGTGTCACTAGT 59.734 38.462 5.21 5.11 46.44 2.57
13 14 6.682746 ACATAGACAAACAGAGTGTCACTAG 58.317 40.000 5.21 4.44 46.44 2.57
14 15 6.650427 ACATAGACAAACAGAGTGTCACTA 57.350 37.500 5.21 0.00 46.44 2.74
15 16 5.537300 ACATAGACAAACAGAGTGTCACT 57.463 39.130 4.81 4.81 46.44 3.41
16 17 7.598869 TGAATACATAGACAAACAGAGTGTCAC 59.401 37.037 7.26 0.00 46.44 3.67
17 18 7.598869 GTGAATACATAGACAAACAGAGTGTCA 59.401 37.037 7.26 0.00 46.44 3.58
18 19 7.598869 TGTGAATACATAGACAAACAGAGTGTC 59.401 37.037 0.00 0.00 44.75 3.67
19 20 7.385205 GTGTGAATACATAGACAAACAGAGTGT 59.615 37.037 0.00 0.00 39.39 3.55
20 21 7.384932 TGTGTGAATACATAGACAAACAGAGTG 59.615 37.037 0.00 0.00 39.39 3.51
21 22 7.441836 TGTGTGAATACATAGACAAACAGAGT 58.558 34.615 0.00 0.00 39.39 3.24
22 23 7.889589 TGTGTGAATACATAGACAAACAGAG 57.110 36.000 0.00 0.00 39.39 3.35
23 24 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
24 25 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
25 26 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
27 28 9.883142 TGATACATGTGTGAATACATAGACAAA 57.117 29.630 9.11 0.00 39.17 2.83
29 30 9.480053 CATGATACATGTGTGAATACATAGACA 57.520 33.333 9.11 0.00 39.17 3.41
30 31 9.481340 ACATGATACATGTGTGAATACATAGAC 57.519 33.333 15.11 0.00 39.17 2.59
34 35 8.623903 GGAAACATGATACATGTGTGAATACAT 58.376 33.333 16.29 0.00 41.77 2.29
35 36 7.201600 CGGAAACATGATACATGTGTGAATACA 60.202 37.037 16.29 0.00 34.63 2.29
36 37 7.125755 CGGAAACATGATACATGTGTGAATAC 58.874 38.462 16.29 1.40 31.80 1.89
37 38 6.259829 CCGGAAACATGATACATGTGTGAATA 59.740 38.462 16.29 0.00 31.80 1.75
38 39 5.066375 CCGGAAACATGATACATGTGTGAAT 59.934 40.000 16.29 0.00 31.80 2.57
39 40 4.394610 CCGGAAACATGATACATGTGTGAA 59.605 41.667 16.29 0.00 31.80 3.18
40 41 3.938334 CCGGAAACATGATACATGTGTGA 59.062 43.478 16.29 0.00 31.80 3.58
41 42 3.689161 ACCGGAAACATGATACATGTGTG 59.311 43.478 9.46 4.81 31.80 3.82
42 43 3.950397 ACCGGAAACATGATACATGTGT 58.050 40.909 9.46 11.88 31.80 3.72
43 44 4.963276 AACCGGAAACATGATACATGTG 57.037 40.909 9.46 7.59 31.80 3.21
44 45 7.771361 TGTATTAACCGGAAACATGATACATGT 59.229 33.333 9.46 10.94 0.00 3.21
45 46 8.148807 TGTATTAACCGGAAACATGATACATG 57.851 34.615 9.46 9.72 0.00 3.21
46 47 8.740123 TTGTATTAACCGGAAACATGATACAT 57.260 30.769 9.46 0.00 31.27 2.29
47 48 8.740123 ATTGTATTAACCGGAAACATGATACA 57.260 30.769 9.46 9.57 0.00 2.29
48 49 9.659830 GAATTGTATTAACCGGAAACATGATAC 57.340 33.333 9.46 7.13 0.00 2.24
49 50 9.621629 AGAATTGTATTAACCGGAAACATGATA 57.378 29.630 9.46 0.00 0.00 2.15
50 51 8.519799 AGAATTGTATTAACCGGAAACATGAT 57.480 30.769 9.46 0.00 0.00 2.45
51 52 7.931578 AGAATTGTATTAACCGGAAACATGA 57.068 32.000 9.46 0.00 0.00 3.07
52 53 7.855904 GCTAGAATTGTATTAACCGGAAACATG 59.144 37.037 9.46 0.00 0.00 3.21
53 54 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
54 55 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
55 56 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
56 57 7.771361 TCATGCTAGAATTGTATTAACCGGAAA 59.229 33.333 9.46 1.61 0.00 3.13
57 58 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
58 59 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
59 60 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
134 135 4.982241 TGAAGGAAATATGCCCTAGAGG 57.018 45.455 0.00 0.00 39.47 3.69
135 136 8.924511 TTAATTGAAGGAAATATGCCCTAGAG 57.075 34.615 0.00 0.00 31.36 2.43
136 137 9.300681 CATTAATTGAAGGAAATATGCCCTAGA 57.699 33.333 0.00 0.00 31.36 2.43
137 138 9.082313 ACATTAATTGAAGGAAATATGCCCTAG 57.918 33.333 0.00 0.00 31.36 3.02
138 139 8.859090 CACATTAATTGAAGGAAATATGCCCTA 58.141 33.333 0.00 0.00 31.36 3.53
139 140 7.202029 CCACATTAATTGAAGGAAATATGCCCT 60.202 37.037 0.00 0.00 0.00 5.19
140 141 6.930722 CCACATTAATTGAAGGAAATATGCCC 59.069 38.462 0.00 0.00 0.00 5.36
141 142 6.930722 CCCACATTAATTGAAGGAAATATGCC 59.069 38.462 0.00 0.00 0.00 4.40
142 143 6.424812 GCCCACATTAATTGAAGGAAATATGC 59.575 38.462 0.00 0.00 0.00 3.14
143 144 6.642131 CGCCCACATTAATTGAAGGAAATATG 59.358 38.462 0.00 0.00 0.00 1.78
144 145 6.239289 CCGCCCACATTAATTGAAGGAAATAT 60.239 38.462 0.00 0.00 0.00 1.28
145 146 5.068460 CCGCCCACATTAATTGAAGGAAATA 59.932 40.000 0.00 0.00 0.00 1.40
146 147 4.141959 CCGCCCACATTAATTGAAGGAAAT 60.142 41.667 0.00 0.00 0.00 2.17
147 148 3.194542 CCGCCCACATTAATTGAAGGAAA 59.805 43.478 0.00 0.00 0.00 3.13
148 149 2.757868 CCGCCCACATTAATTGAAGGAA 59.242 45.455 0.00 0.00 0.00 3.36
149 150 2.374184 CCGCCCACATTAATTGAAGGA 58.626 47.619 0.00 0.00 0.00 3.36
150 151 1.408702 CCCGCCCACATTAATTGAAGG 59.591 52.381 0.00 0.00 0.00 3.46
151 152 2.358898 CTCCCGCCCACATTAATTGAAG 59.641 50.000 0.00 0.00 0.00 3.02
152 153 2.025793 TCTCCCGCCCACATTAATTGAA 60.026 45.455 0.00 0.00 0.00 2.69
153 154 1.562008 TCTCCCGCCCACATTAATTGA 59.438 47.619 0.00 0.00 0.00 2.57
154 155 2.051334 TCTCCCGCCCACATTAATTG 57.949 50.000 0.00 0.00 0.00 2.32
155 156 2.654863 CTTCTCCCGCCCACATTAATT 58.345 47.619 0.00 0.00 0.00 1.40
169 170 0.107654 CCACCCATTCGTCCTTCTCC 60.108 60.000 0.00 0.00 0.00 3.71
170 171 0.744771 GCCACCCATTCGTCCTTCTC 60.745 60.000 0.00 0.00 0.00 2.87
190 191 1.519343 TCATGTTCAAACGACACGACG 59.481 47.619 0.00 0.00 39.31 5.12
281 282 1.749638 AGACGCTACCTCTCACCGG 60.750 63.158 0.00 0.00 0.00 5.28
283 284 1.139947 GCAGACGCTACCTCTCACC 59.860 63.158 0.00 0.00 34.30 4.02
310 311 2.348666 GTGTCAGTGTCGTATTCATGCC 59.651 50.000 0.00 0.00 0.00 4.40
322 323 1.169577 CCGCTCTAGAGTGTCAGTGT 58.830 55.000 27.23 0.00 37.24 3.55
326 327 3.052620 GCGCCGCTCTAGAGTGTCA 62.053 63.158 27.23 0.00 37.24 3.58
329 330 2.278466 CAGCGCCGCTCTAGAGTG 60.278 66.667 23.80 23.80 36.40 3.51
330 331 2.438614 TCAGCGCCGCTCTAGAGT 60.439 61.111 20.75 0.00 36.40 3.24
365 366 3.121030 CTTCCTCGCCCTTGCACG 61.121 66.667 0.00 0.00 37.32 5.34
392 393 2.446848 CCTGATCGCCCTGACCCAT 61.447 63.158 0.00 0.00 0.00 4.00
405 406 2.124570 GCCACACCGATGCCTGAT 60.125 61.111 0.00 0.00 0.00 2.90
410 411 2.464459 GCTACTGCCACACCGATGC 61.464 63.158 0.00 0.00 0.00 3.91
411 412 3.799753 GCTACTGCCACACCGATG 58.200 61.111 0.00 0.00 0.00 3.84
425 431 2.501223 CTTTGCTGACGTCCGGGCTA 62.501 60.000 14.12 8.97 0.00 3.93
426 432 3.883744 CTTTGCTGACGTCCGGGCT 62.884 63.158 14.12 0.00 0.00 5.19
436 442 1.276421 GTCAGACTAGGGCTTTGCTGA 59.724 52.381 0.00 0.00 0.00 4.26
444 450 0.896226 AACCGAAGTCAGACTAGGGC 59.104 55.000 22.29 6.35 32.55 5.19
447 453 3.026630 TGCAAACCGAAGTCAGACTAG 57.973 47.619 2.64 1.15 0.00 2.57
448 454 3.462483 TTGCAAACCGAAGTCAGACTA 57.538 42.857 2.64 0.00 0.00 2.59
449 455 2.325583 TTGCAAACCGAAGTCAGACT 57.674 45.000 0.00 0.00 0.00 3.24
475 481 2.734591 GCAGGCGATCCGGACATA 59.265 61.111 6.12 0.00 37.47 2.29
476 482 4.592192 CGCAGGCGATCCGGACAT 62.592 66.667 6.12 0.00 42.83 3.06
489 495 1.860950 CGAATCTGTATTGGTCCGCAG 59.139 52.381 0.00 0.00 0.00 5.18
498 506 4.933400 AGTTAACCAACGCGAATCTGTATT 59.067 37.500 15.93 4.04 39.78 1.89
504 512 3.150731 CGAAAGTTAACCAACGCGAATC 58.849 45.455 15.93 0.00 39.78 2.52
507 515 1.569708 ACGAAAGTTAACCAACGCGA 58.430 45.000 15.93 0.00 46.40 5.87
527 535 1.509703 CCGATCATGCTGTCCAGATG 58.490 55.000 0.00 0.31 0.00 2.90
528 536 0.395686 CCCGATCATGCTGTCCAGAT 59.604 55.000 0.00 0.00 0.00 2.90
533 541 0.384309 TACGTCCCGATCATGCTGTC 59.616 55.000 0.00 0.00 0.00 3.51
535 543 1.670087 GGATACGTCCCGATCATGCTG 60.670 57.143 0.00 0.00 38.69 4.41
549 557 0.526954 CCTCAAACGACCGGGATACG 60.527 60.000 6.32 8.75 43.80 3.06
561 569 2.251642 AACGCGCTCACCCTCAAAC 61.252 57.895 5.73 0.00 0.00 2.93
579 587 3.243805 TGTTTTACCGTGAGATCGTTCCA 60.244 43.478 0.00 0.00 0.00 3.53
624 633 1.609208 TTGAAGAAACTGCCAGGAGC 58.391 50.000 0.00 0.00 44.14 4.70
627 636 4.589216 TTTGATTGAAGAAACTGCCAGG 57.411 40.909 0.00 0.00 0.00 4.45
932 942 1.247419 TGGCACGGGGCAGTAAATTG 61.247 55.000 11.16 0.00 45.76 2.32
990 1000 3.781307 CCGGCCATGAGACGGGAA 61.781 66.667 17.87 0.00 43.69 3.97
1485 1502 0.322546 ATCAGAAGCCCCGTGTTTCC 60.323 55.000 0.00 0.00 34.96 3.13
1492 1509 1.153086 CCAAGGATCAGAAGCCCCG 60.153 63.158 0.00 0.00 0.00 5.73
1892 1937 5.386060 AGGATTCGAGATAGTACCATGTCA 58.614 41.667 0.00 0.00 0.00 3.58
2060 2109 8.044060 TGAGCATAAGAAAACATGTAGGAAAG 57.956 34.615 0.00 0.00 0.00 2.62
2178 2227 4.519540 AAGGAAACATGTGGCACATAAC 57.480 40.909 30.96 20.48 44.52 1.89
2202 2251 8.328758 TGTCTGATACCCTTAGAATCACAATTT 58.671 33.333 0.00 0.00 0.00 1.82
2219 2268 7.677276 GCCTGATGTATTTTGTGTGTCTGATAC 60.677 40.741 0.00 0.00 0.00 2.24
2336 2424 4.829492 CCCAGAAGATCTCAAAACCAACTT 59.171 41.667 0.00 0.00 0.00 2.66
2678 2778 2.505650 TCAAAGCCGGATGGATGAAA 57.494 45.000 5.05 0.00 37.49 2.69
2800 2905 1.141254 CTACTAGGCACGAGGAGGAGA 59.859 57.143 0.00 0.00 38.43 3.71
2833 2941 5.778241 TGGACTAAAACTGAGTACATGAGGA 59.222 40.000 0.00 0.00 32.61 3.71
2855 2963 6.399639 TTGAAAGGTTTTAGGCTTAGTTGG 57.600 37.500 0.00 0.00 0.00 3.77
2857 2965 7.289084 TGGAATTGAAAGGTTTTAGGCTTAGTT 59.711 33.333 0.00 0.00 0.00 2.24
2907 3015 9.699703 GGGTTAATAGAAAGTTAGAGCTATGAG 57.300 37.037 0.00 0.00 0.00 2.90
2908 3016 8.648693 GGGGTTAATAGAAAGTTAGAGCTATGA 58.351 37.037 0.00 0.00 0.00 2.15
2909 3017 7.878644 GGGGGTTAATAGAAAGTTAGAGCTATG 59.121 40.741 0.00 0.00 0.00 2.23
2910 3018 7.571357 TGGGGGTTAATAGAAAGTTAGAGCTAT 59.429 37.037 0.00 0.00 0.00 2.97
2911 3019 6.904654 TGGGGGTTAATAGAAAGTTAGAGCTA 59.095 38.462 0.00 0.00 0.00 3.32
2912 3020 5.729718 TGGGGGTTAATAGAAAGTTAGAGCT 59.270 40.000 0.00 0.00 0.00 4.09
2913 3021 5.997843 TGGGGGTTAATAGAAAGTTAGAGC 58.002 41.667 0.00 0.00 0.00 4.09
2914 3022 7.147373 TGGATGGGGGTTAATAGAAAGTTAGAG 60.147 40.741 0.00 0.00 0.00 2.43
2915 3023 6.679303 TGGATGGGGGTTAATAGAAAGTTAGA 59.321 38.462 0.00 0.00 0.00 2.10
2916 3024 6.906848 TGGATGGGGGTTAATAGAAAGTTAG 58.093 40.000 0.00 0.00 0.00 2.34
2917 3025 6.911993 TGGATGGGGGTTAATAGAAAGTTA 57.088 37.500 0.00 0.00 0.00 2.24
2918 3026 5.806955 TGGATGGGGGTTAATAGAAAGTT 57.193 39.130 0.00 0.00 0.00 2.66
2919 3027 5.255443 AGTTGGATGGGGGTTAATAGAAAGT 59.745 40.000 0.00 0.00 0.00 2.66
2920 3028 5.766590 AGTTGGATGGGGGTTAATAGAAAG 58.233 41.667 0.00 0.00 0.00 2.62
3366 3484 4.935205 CCAGTTCATTGTATGGAAAGTCGA 59.065 41.667 0.00 0.00 34.60 4.20
3951 4069 9.677567 TTGCATTAGAGTTTAGTTGACAAATTC 57.322 29.630 0.00 0.00 0.00 2.17
4339 4457 1.341285 ACCAGCCTCAGCAATGCATAA 60.341 47.619 8.35 0.00 43.56 1.90
5122 5240 1.388837 GGGAAAACTTGTGCCACGGT 61.389 55.000 0.00 0.00 0.00 4.83
5137 5255 4.667935 TTCGGGGGCCTGAGGGAA 62.668 66.667 0.84 0.00 32.36 3.97
5151 5269 1.071699 TCCCTTTCTTGGACCTGTTCG 59.928 52.381 0.00 0.00 0.00 3.95
5190 5308 0.248949 GGTATTGAGACGCCGGACTC 60.249 60.000 5.05 11.24 35.83 3.36
5241 5359 2.158219 TGAACAGGTCCAAGAGGTAGGA 60.158 50.000 0.00 0.00 35.89 2.94
5282 5403 0.034186 TGGCATGATTGACTCCCACC 60.034 55.000 0.00 0.00 0.00 4.61
5317 5438 2.005451 GCAGTAGAGGCTTGTCACATG 58.995 52.381 0.00 0.00 0.00 3.21
5745 5873 9.698309 GCAGTACATAGTGTATCTCATATTGTT 57.302 33.333 0.00 0.00 35.05 2.83
5747 5875 9.866798 ATGCAGTACATAGTGTATCTCATATTG 57.133 33.333 0.00 0.00 37.17 1.90
5796 5926 8.152898 TGAGTAAATGATGATCTCCATACTTGG 58.847 37.037 0.00 0.00 45.15 3.61
5797 5927 9.722184 ATGAGTAAATGATGATCTCCATACTTG 57.278 33.333 0.00 0.00 35.17 3.16
5822 5958 5.687166 TTAGTAAATCCCTCACCGTTCAT 57.313 39.130 0.00 0.00 0.00 2.57
5895 6031 3.280920 TGGCAAACACCATTTTCGC 57.719 47.368 0.00 0.00 33.75 4.70
5912 6048 2.787601 ACAACACTGAGCAAAGCATG 57.212 45.000 0.00 0.00 0.00 4.06
5913 6049 4.916983 TTAACAACACTGAGCAAAGCAT 57.083 36.364 0.00 0.00 0.00 3.79
5962 6098 2.007608 GAAGGGCGCTTTCGAAGTATT 58.992 47.619 17.99 0.00 38.10 1.89
5970 6106 1.943340 CAGGATTAGAAGGGCGCTTTC 59.057 52.381 17.99 12.11 0.00 2.62
5995 6131 4.336993 AGTTTTTACTGTTCATGGCGTTCA 59.663 37.500 0.00 0.00 0.00 3.18
5996 6132 4.675114 CAGTTTTTACTGTTCATGGCGTTC 59.325 41.667 0.00 0.00 33.32 3.95
6036 6176 9.862371 TGTAAAAAGAAAACTAAGCAATGTTCA 57.138 25.926 0.00 0.00 0.00 3.18
6053 6193 7.909121 CAGCACAAAAATTTGCATGTAAAAAGA 59.091 29.630 13.11 0.00 41.79 2.52
6061 6201 6.431278 TGATTTCAGCACAAAAATTTGCATG 58.569 32.000 5.82 3.24 41.79 4.06
6062 6202 6.621316 TGATTTCAGCACAAAAATTTGCAT 57.379 29.167 5.82 0.00 41.79 3.96
6077 6217 7.417116 CCCAAACCTTCAGGAATATGATTTCAG 60.417 40.741 0.00 0.00 38.94 3.02
6086 6226 3.534357 TTGCCCAAACCTTCAGGAATA 57.466 42.857 0.00 0.00 38.94 1.75
6097 6237 5.689514 GCCATTTTGTTATTTTTGCCCAAAC 59.310 36.000 0.00 0.00 0.00 2.93
6098 6238 5.360714 TGCCATTTTGTTATTTTTGCCCAAA 59.639 32.000 0.00 0.00 0.00 3.28
6099 6239 4.889409 TGCCATTTTGTTATTTTTGCCCAA 59.111 33.333 0.00 0.00 0.00 4.12
6100 6240 4.276926 GTGCCATTTTGTTATTTTTGCCCA 59.723 37.500 0.00 0.00 0.00 5.36
6101 6241 4.518590 AGTGCCATTTTGTTATTTTTGCCC 59.481 37.500 0.00 0.00 0.00 5.36
6102 6242 5.334802 GGAGTGCCATTTTGTTATTTTTGCC 60.335 40.000 0.00 0.00 0.00 4.52
6103 6243 5.238214 TGGAGTGCCATTTTGTTATTTTTGC 59.762 36.000 0.00 0.00 39.92 3.68
6104 6244 6.857777 TGGAGTGCCATTTTGTTATTTTTG 57.142 33.333 0.00 0.00 39.92 2.44
6105 6245 7.872113 TTTGGAGTGCCATTTTGTTATTTTT 57.128 28.000 0.00 0.00 45.46 1.94
6106 6246 7.521910 GCATTTGGAGTGCCATTTTGTTATTTT 60.522 33.333 0.00 0.00 45.46 1.82
6107 6247 6.072563 GCATTTGGAGTGCCATTTTGTTATTT 60.073 34.615 0.00 0.00 45.46 1.40
6108 6248 5.412286 GCATTTGGAGTGCCATTTTGTTATT 59.588 36.000 0.00 0.00 45.46 1.40
6109 6249 4.937015 GCATTTGGAGTGCCATTTTGTTAT 59.063 37.500 0.00 0.00 45.46 1.89
6110 6250 4.040217 AGCATTTGGAGTGCCATTTTGTTA 59.960 37.500 0.00 0.00 45.46 2.41
6111 6251 3.140623 GCATTTGGAGTGCCATTTTGTT 58.859 40.909 0.00 0.00 45.46 2.83
6112 6252 2.369532 AGCATTTGGAGTGCCATTTTGT 59.630 40.909 0.00 0.00 45.46 2.83
6113 6253 3.048337 AGCATTTGGAGTGCCATTTTG 57.952 42.857 0.00 0.00 45.46 2.44
6114 6254 3.775261 AAGCATTTGGAGTGCCATTTT 57.225 38.095 0.00 0.00 45.46 1.82
6115 6255 3.775261 AAAGCATTTGGAGTGCCATTT 57.225 38.095 0.00 0.00 45.46 2.32
6116 6256 3.775261 AAAAGCATTTGGAGTGCCATT 57.225 38.095 0.00 0.00 45.46 3.16
6117 6257 4.088634 TCTAAAAGCATTTGGAGTGCCAT 58.911 39.130 0.00 0.00 45.46 4.40
6118 6258 3.495331 TCTAAAAGCATTTGGAGTGCCA 58.505 40.909 0.00 0.00 43.50 4.92
6119 6259 4.021981 ACTTCTAAAAGCATTTGGAGTGCC 60.022 41.667 0.78 0.00 43.50 5.01
6120 6260 5.126396 ACTTCTAAAAGCATTTGGAGTGC 57.874 39.130 0.78 0.00 39.02 4.40
6121 6261 7.389053 AGACTACTTCTAAAAGCATTTGGAGTG 59.611 37.037 0.78 2.04 39.02 3.51
6122 6262 7.454225 AGACTACTTCTAAAAGCATTTGGAGT 58.546 34.615 0.78 2.50 39.02 3.85
6123 6263 7.913674 AGACTACTTCTAAAAGCATTTGGAG 57.086 36.000 0.78 0.00 39.02 3.86
6124 6264 8.691661 AAAGACTACTTCTAAAAGCATTTGGA 57.308 30.769 0.00 0.00 34.96 3.53
6125 6265 9.750125 AAAAAGACTACTTCTAAAAGCATTTGG 57.250 29.630 0.00 0.00 34.96 3.28
6130 6270 8.557029 GCTACAAAAAGACTACTTCTAAAAGCA 58.443 33.333 0.00 0.00 35.81 3.91
6131 6271 8.557029 TGCTACAAAAAGACTACTTCTAAAAGC 58.443 33.333 0.00 0.00 35.81 3.51
6135 6275 9.772973 TCAATGCTACAAAAAGACTACTTCTAA 57.227 29.630 0.00 0.00 35.05 2.10
6136 6276 9.944376 ATCAATGCTACAAAAAGACTACTTCTA 57.056 29.630 0.00 0.00 35.05 2.10
6137 6277 8.854614 ATCAATGCTACAAAAAGACTACTTCT 57.145 30.769 0.00 0.00 35.05 2.85
6138 6278 9.899226 AAATCAATGCTACAAAAAGACTACTTC 57.101 29.630 0.00 0.00 35.05 3.01
6164 6304 0.395862 TTCCAGTGCCGTGGGAAAAA 60.396 50.000 1.75 0.00 37.74 1.94
6165 6305 0.178975 ATTCCAGTGCCGTGGGAAAA 60.179 50.000 0.00 0.00 43.40 2.29
6166 6306 0.893270 CATTCCAGTGCCGTGGGAAA 60.893 55.000 0.00 0.00 43.40 3.13
6167 6307 1.303236 CATTCCAGTGCCGTGGGAA 60.303 57.895 1.75 0.00 44.22 3.97
6168 6308 2.350895 CATTCCAGTGCCGTGGGA 59.649 61.111 1.75 0.00 38.26 4.37
6169 6309 2.034066 ACATTCCAGTGCCGTGGG 59.966 61.111 1.75 0.00 38.26 4.61
6170 6310 1.172180 AACACATTCCAGTGCCGTGG 61.172 55.000 0.00 0.00 43.23 4.94
6171 6311 0.667993 AAACACATTCCAGTGCCGTG 59.332 50.000 0.00 0.00 43.23 4.94
6172 6312 1.336755 GAAAACACATTCCAGTGCCGT 59.663 47.619 0.00 0.00 43.23 5.68
6173 6313 1.608590 AGAAAACACATTCCAGTGCCG 59.391 47.619 0.00 0.00 43.23 5.69
6174 6314 3.068024 TGAAGAAAACACATTCCAGTGCC 59.932 43.478 0.00 0.00 43.23 5.01
6175 6315 4.044426 GTGAAGAAAACACATTCCAGTGC 58.956 43.478 0.00 0.00 43.23 4.40
6176 6316 5.066375 TCTGTGAAGAAAACACATTCCAGTG 59.934 40.000 0.00 0.00 45.18 3.66
6177 6317 5.192927 TCTGTGAAGAAAACACATTCCAGT 58.807 37.500 0.00 0.00 45.18 4.00
6178 6318 5.756195 TCTGTGAAGAAAACACATTCCAG 57.244 39.130 0.00 0.00 45.18 3.86
6179 6319 6.522625 TTTCTGTGAAGAAAACACATTCCA 57.477 33.333 0.00 0.00 45.18 3.53
6180 6320 8.330302 CAAATTTCTGTGAAGAAAACACATTCC 58.670 33.333 5.11 0.00 45.18 3.01
6181 6321 7.847564 GCAAATTTCTGTGAAGAAAACACATTC 59.152 33.333 5.11 0.00 45.18 2.67
6182 6322 7.333921 TGCAAATTTCTGTGAAGAAAACACATT 59.666 29.630 5.11 0.00 45.18 2.71
6183 6323 6.817641 TGCAAATTTCTGTGAAGAAAACACAT 59.182 30.769 5.11 0.00 45.18 3.21
6184 6324 6.162079 TGCAAATTTCTGTGAAGAAAACACA 58.838 32.000 5.11 0.00 44.34 3.72
6185 6325 6.645700 TGCAAATTTCTGTGAAGAAAACAC 57.354 33.333 5.11 0.00 40.60 3.32
6186 6326 6.873076 ACTTGCAAATTTCTGTGAAGAAAACA 59.127 30.769 0.00 0.41 40.60 2.83
6187 6327 7.276438 AGACTTGCAAATTTCTGTGAAGAAAAC 59.724 33.333 0.00 0.00 40.60 2.43
6188 6328 7.276218 CAGACTTGCAAATTTCTGTGAAGAAAA 59.724 33.333 18.11 0.00 40.60 2.29
6189 6329 6.753279 CAGACTTGCAAATTTCTGTGAAGAAA 59.247 34.615 18.11 3.56 41.33 2.52
6190 6330 6.127647 ACAGACTTGCAAATTTCTGTGAAGAA 60.128 34.615 25.90 0.00 43.50 2.52
6191 6331 5.357878 ACAGACTTGCAAATTTCTGTGAAGA 59.642 36.000 25.90 0.00 43.50 2.87
6192 6332 5.585390 ACAGACTTGCAAATTTCTGTGAAG 58.415 37.500 25.90 9.66 43.50 3.02
6193 6333 5.581126 ACAGACTTGCAAATTTCTGTGAA 57.419 34.783 25.90 0.00 43.50 3.18
6194 6334 6.054941 TCTACAGACTTGCAAATTTCTGTGA 58.945 36.000 30.34 24.60 44.31 3.58
6195 6335 6.304356 TCTACAGACTTGCAAATTTCTGTG 57.696 37.500 30.34 23.50 44.31 3.66
6196 6336 6.318648 TGTTCTACAGACTTGCAAATTTCTGT 59.681 34.615 27.84 27.84 45.61 3.41
6197 6337 6.728200 TGTTCTACAGACTTGCAAATTTCTG 58.272 36.000 22.10 22.10 40.11 3.02
6198 6338 6.942532 TGTTCTACAGACTTGCAAATTTCT 57.057 33.333 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.