Multiple sequence alignment - TraesCS5D01G093300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G093300 chr5D 100.000 2765 0 0 1 2765 102273650 102276414 0.000000e+00 5107
1 TraesCS5D01G093300 chr5A 93.882 2419 89 26 99 2480 97560922 97563318 0.000000e+00 3592
2 TraesCS5D01G093300 chr5A 96.629 267 9 0 2499 2765 97563305 97563571 7.030000e-121 444
3 TraesCS5D01G093300 chr5B 94.444 1674 53 21 806 2458 111679203 111680857 0.000000e+00 2540
4 TraesCS5D01G093300 chr5B 93.099 768 51 2 37 803 111677129 111677895 0.000000e+00 1123
5 TraesCS5D01G093300 chr5B 98.253 229 4 0 2537 2765 111680881 111681109 4.290000e-108 401


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G093300 chr5D 102273650 102276414 2764 False 5107.000000 5107 100.000000 1 2765 1 chr5D.!!$F1 2764
1 TraesCS5D01G093300 chr5A 97560922 97563571 2649 False 2018.000000 3592 95.255500 99 2765 2 chr5A.!!$F1 2666
2 TraesCS5D01G093300 chr5B 111677129 111681109 3980 False 1354.666667 2540 95.265333 37 2765 3 chr5B.!!$F1 2728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.526954 GCGGACCGATACATGAACGT 60.527 55.0 20.5 0.0 0.0 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 3324 0.81321 GAGCCAAGATCAGCTTCCCG 60.813 60.0 6.4 0.0 40.11 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.501714 GTGCCGCGGACCGATACA 62.502 66.667 33.48 12.98 40.02 2.29
26 27 3.533105 TGCCGCGGACCGATACAT 61.533 61.111 33.48 0.00 40.02 2.29
27 28 3.036084 GCCGCGGACCGATACATG 61.036 66.667 33.48 0.00 40.02 3.21
28 29 2.725641 CCGCGGACCGATACATGA 59.274 61.111 24.07 0.00 40.02 3.07
29 30 1.066752 CCGCGGACCGATACATGAA 59.933 57.895 24.07 0.00 40.02 2.57
30 31 1.213094 CCGCGGACCGATACATGAAC 61.213 60.000 24.07 0.00 40.02 3.18
31 32 1.537289 CGCGGACCGATACATGAACG 61.537 60.000 20.50 4.03 40.02 3.95
32 33 0.526954 GCGGACCGATACATGAACGT 60.527 55.000 20.50 0.00 0.00 3.99
33 34 1.917273 CGGACCGATACATGAACGTT 58.083 50.000 8.64 0.00 0.00 3.99
34 35 1.586578 CGGACCGATACATGAACGTTG 59.413 52.381 8.64 0.00 0.00 4.10
35 36 1.931172 GGACCGATACATGAACGTTGG 59.069 52.381 5.00 0.00 0.00 3.77
45 46 3.748048 ACATGAACGTTGGATGACTTCAG 59.252 43.478 19.08 1.69 0.00 3.02
48 49 0.670546 ACGTTGGATGACTTCAGCGG 60.671 55.000 0.00 0.00 40.85 5.52
64 65 2.426023 GGTCCAGACAGCACGGTT 59.574 61.111 0.00 0.00 0.00 4.44
65 66 1.961277 GGTCCAGACAGCACGGTTG 60.961 63.158 0.00 0.00 0.00 3.77
67 68 2.669569 CCAGACAGCACGGTTGGG 60.670 66.667 0.00 0.00 0.00 4.12
70 71 3.041940 GACAGCACGGTTGGGACG 61.042 66.667 0.00 0.00 37.36 4.79
71 72 3.509137 GACAGCACGGTTGGGACGA 62.509 63.158 0.00 0.00 34.93 4.20
74 75 1.671054 AGCACGGTTGGGACGAATG 60.671 57.895 0.00 0.00 34.93 2.67
77 78 2.433491 CGGTTGGGACGAATGCGA 60.433 61.111 0.00 0.00 41.64 5.10
79 80 1.375523 GGTTGGGACGAATGCGAGT 60.376 57.895 0.00 0.00 41.64 4.18
81 82 0.669318 GTTGGGACGAATGCGAGTGA 60.669 55.000 0.00 0.00 41.64 3.41
85 86 2.093921 TGGGACGAATGCGAGTGATTTA 60.094 45.455 0.00 0.00 41.64 1.40
92 93 2.004583 TGCGAGTGATTTAAGGGTCG 57.995 50.000 0.00 0.00 0.00 4.79
95 96 1.287425 GAGTGATTTAAGGGTCGGCG 58.713 55.000 0.00 0.00 0.00 6.46
119 120 5.074746 TGAGATGCCCTTACCTGTATCTA 57.925 43.478 0.00 0.00 34.63 1.98
333 335 3.142838 GCATGGCGTGGGCTGATT 61.143 61.111 9.08 0.00 39.81 2.57
588 590 1.415659 GAGATCTATGTGCCTGGTGCT 59.584 52.381 0.00 0.00 42.00 4.40
652 654 5.924356 TCTGTGGTGACTTGAGATTGTAAA 58.076 37.500 0.00 0.00 0.00 2.01
767 770 4.649218 CGATTCCCCCACAAATAGGAAAAT 59.351 41.667 0.00 0.00 41.53 1.82
1452 2767 0.179194 CCGTCTTCGTCTTCGAGTCC 60.179 60.000 0.00 0.00 46.81 3.85
1524 2839 4.736896 GACGTCGGGAAGCGCCTT 62.737 66.667 2.29 0.00 36.66 4.35
1821 3149 6.696411 TCTTTCTTTTTCTTTTGTTCTGGCA 58.304 32.000 0.00 0.00 0.00 4.92
1918 3246 9.490379 TGAGAAATTCCTAAACTCTCTTGTTAC 57.510 33.333 0.00 0.00 34.80 2.50
1961 3289 5.674525 CCTCAGGAGATGTAACTGCAATAA 58.325 41.667 0.00 0.00 32.42 1.40
1963 3291 6.769822 CCTCAGGAGATGTAACTGCAATAAAT 59.230 38.462 0.00 0.00 32.42 1.40
1964 3292 7.933577 CCTCAGGAGATGTAACTGCAATAAATA 59.066 37.037 0.00 0.00 32.42 1.40
1965 3293 8.893219 TCAGGAGATGTAACTGCAATAAATAG 57.107 34.615 0.00 0.00 32.42 1.73
1966 3294 7.442364 TCAGGAGATGTAACTGCAATAAATAGC 59.558 37.037 0.00 0.00 32.42 2.97
1967 3295 7.227314 CAGGAGATGTAACTGCAATAAATAGCA 59.773 37.037 0.00 0.00 39.25 3.49
1969 3297 9.219603 GGAGATGTAACTGCAATAAATAGCATA 57.780 33.333 0.00 0.00 40.42 3.14
2116 3474 8.231837 CCAAGTTTTTATGCAAATTTGATCAGG 58.768 33.333 22.31 2.26 36.12 3.86
2218 3576 3.106827 TCCCATACTGAGATGAAGTGCA 58.893 45.455 0.00 0.00 0.00 4.57
2331 3690 7.123397 GCTATATGATATTCCTCCTCACTGTGA 59.877 40.741 10.50 10.50 0.00 3.58
2400 3765 8.898761 TCTATTTTATTTGTGTGATACCGCAAT 58.101 29.630 0.00 0.00 35.01 3.56
2431 3796 4.142315 CCACAAATGCTCTGGAAACATAGG 60.142 45.833 0.00 0.00 41.51 2.57
2442 3807 7.336931 GCTCTGGAAACATAGGTCTTAATTTGA 59.663 37.037 0.00 0.00 41.51 2.69
2476 3847 3.181329 TCTCCCTCATAAGCAAGAACCA 58.819 45.455 0.00 0.00 0.00 3.67
2477 3848 3.587061 TCTCCCTCATAAGCAAGAACCAA 59.413 43.478 0.00 0.00 0.00 3.67
2478 3849 4.228210 TCTCCCTCATAAGCAAGAACCAAT 59.772 41.667 0.00 0.00 0.00 3.16
2479 3850 4.934356 TCCCTCATAAGCAAGAACCAATT 58.066 39.130 0.00 0.00 0.00 2.32
2480 3851 5.332743 TCCCTCATAAGCAAGAACCAATTT 58.667 37.500 0.00 0.00 0.00 1.82
2481 3852 5.418840 TCCCTCATAAGCAAGAACCAATTTC 59.581 40.000 0.00 0.00 33.95 2.17
2482 3853 5.394553 CCCTCATAAGCAAGAACCAATTTCC 60.395 44.000 0.00 0.00 34.32 3.13
2483 3854 5.394553 CCTCATAAGCAAGAACCAATTTCCC 60.395 44.000 0.00 0.00 34.32 3.97
2484 3855 4.466015 TCATAAGCAAGAACCAATTTCCCC 59.534 41.667 0.00 0.00 34.32 4.81
2485 3856 2.702270 AGCAAGAACCAATTTCCCCT 57.298 45.000 0.00 0.00 34.32 4.79
2486 3857 3.825908 AGCAAGAACCAATTTCCCCTA 57.174 42.857 0.00 0.00 34.32 3.53
2487 3858 4.126520 AGCAAGAACCAATTTCCCCTAA 57.873 40.909 0.00 0.00 34.32 2.69
2488 3859 4.488770 AGCAAGAACCAATTTCCCCTAAA 58.511 39.130 0.00 0.00 34.32 1.85
2489 3860 4.528206 AGCAAGAACCAATTTCCCCTAAAG 59.472 41.667 0.00 0.00 34.32 1.85
2490 3861 4.526650 GCAAGAACCAATTTCCCCTAAAGA 59.473 41.667 0.00 0.00 34.32 2.52
2491 3862 5.011635 GCAAGAACCAATTTCCCCTAAAGAA 59.988 40.000 0.00 0.00 34.32 2.52
2492 3863 6.463755 GCAAGAACCAATTTCCCCTAAAGAAA 60.464 38.462 0.00 0.00 37.61 2.52
2493 3864 7.505258 CAAGAACCAATTTCCCCTAAAGAAAA 58.495 34.615 0.00 0.00 36.83 2.29
2494 3865 7.684317 AGAACCAATTTCCCCTAAAGAAAAA 57.316 32.000 0.00 0.00 36.83 1.94
2495 3866 7.735917 AGAACCAATTTCCCCTAAAGAAAAAG 58.264 34.615 0.00 0.00 36.83 2.27
2496 3867 7.567250 AGAACCAATTTCCCCTAAAGAAAAAGA 59.433 33.333 0.00 0.00 36.83 2.52
2497 3868 7.684317 ACCAATTTCCCCTAAAGAAAAAGAA 57.316 32.000 0.00 0.00 36.83 2.52
2498 3869 8.096621 ACCAATTTCCCCTAAAGAAAAAGAAA 57.903 30.769 0.00 0.00 36.83 2.52
2499 3870 8.210946 ACCAATTTCCCCTAAAGAAAAAGAAAG 58.789 33.333 0.00 0.00 36.83 2.62
2500 3871 7.173218 CCAATTTCCCCTAAAGAAAAAGAAAGC 59.827 37.037 0.00 0.00 36.83 3.51
2501 3872 6.800072 TTTCCCCTAAAGAAAAAGAAAGCA 57.200 33.333 0.00 0.00 30.48 3.91
2502 3873 6.800072 TTCCCCTAAAGAAAAAGAAAGCAA 57.200 33.333 0.00 0.00 0.00 3.91
2503 3874 6.405278 TCCCCTAAAGAAAAAGAAAGCAAG 57.595 37.500 0.00 0.00 0.00 4.01
2504 3875 6.133356 TCCCCTAAAGAAAAAGAAAGCAAGA 58.867 36.000 0.00 0.00 0.00 3.02
2505 3876 6.609616 TCCCCTAAAGAAAAAGAAAGCAAGAA 59.390 34.615 0.00 0.00 0.00 2.52
2506 3877 6.701841 CCCCTAAAGAAAAAGAAAGCAAGAAC 59.298 38.462 0.00 0.00 0.00 3.01
2507 3878 6.701841 CCCTAAAGAAAAAGAAAGCAAGAACC 59.298 38.462 0.00 0.00 0.00 3.62
2524 3895 3.953612 AGAACCAATTCACAAGTGCAGAA 59.046 39.130 0.00 0.00 37.29 3.02
2555 3926 2.305343 AGAAGCAAGCTCAAGAGGACAT 59.695 45.455 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.785189 ATGTATCGGTCCGCGGCAC 62.785 63.158 23.51 19.14 0.00 5.01
9 10 3.533105 ATGTATCGGTCCGCGGCA 61.533 61.111 23.51 11.51 0.00 5.69
10 11 2.964438 TTCATGTATCGGTCCGCGGC 62.964 60.000 23.51 16.04 0.00 6.53
11 12 1.066752 TTCATGTATCGGTCCGCGG 59.933 57.895 22.12 22.12 0.00 6.46
12 13 1.537289 CGTTCATGTATCGGTCCGCG 61.537 60.000 6.34 0.00 0.00 6.46
13 14 0.526954 ACGTTCATGTATCGGTCCGC 60.527 55.000 6.34 0.00 0.00 5.54
14 15 1.586578 CAACGTTCATGTATCGGTCCG 59.413 52.381 4.39 4.39 0.00 4.79
15 16 1.931172 CCAACGTTCATGTATCGGTCC 59.069 52.381 0.00 0.00 0.00 4.46
16 17 2.883574 TCCAACGTTCATGTATCGGTC 58.116 47.619 0.00 0.00 0.00 4.79
17 18 3.118920 TCATCCAACGTTCATGTATCGGT 60.119 43.478 13.84 0.00 0.00 4.69
18 19 3.245284 GTCATCCAACGTTCATGTATCGG 59.755 47.826 13.84 4.15 0.00 4.18
19 20 4.112634 AGTCATCCAACGTTCATGTATCG 58.887 43.478 13.84 0.00 0.00 2.92
20 21 5.580691 TGAAGTCATCCAACGTTCATGTATC 59.419 40.000 13.84 11.43 0.00 2.24
21 22 5.487433 TGAAGTCATCCAACGTTCATGTAT 58.513 37.500 13.84 4.52 0.00 2.29
22 23 4.888917 TGAAGTCATCCAACGTTCATGTA 58.111 39.130 13.84 2.43 0.00 2.29
23 24 3.738982 TGAAGTCATCCAACGTTCATGT 58.261 40.909 13.84 0.00 0.00 3.21
24 25 3.425359 GCTGAAGTCATCCAACGTTCATG 60.425 47.826 0.00 4.01 0.00 3.07
25 26 2.744202 GCTGAAGTCATCCAACGTTCAT 59.256 45.455 0.00 0.00 0.00 2.57
26 27 2.143122 GCTGAAGTCATCCAACGTTCA 58.857 47.619 0.00 0.00 0.00 3.18
27 28 1.126846 CGCTGAAGTCATCCAACGTTC 59.873 52.381 0.00 0.00 0.00 3.95
28 29 1.148310 CGCTGAAGTCATCCAACGTT 58.852 50.000 0.00 0.00 0.00 3.99
29 30 0.670546 CCGCTGAAGTCATCCAACGT 60.671 55.000 0.00 0.00 0.00 3.99
30 31 0.670546 ACCGCTGAAGTCATCCAACG 60.671 55.000 0.00 0.00 0.00 4.10
31 32 1.079503 GACCGCTGAAGTCATCCAAC 58.920 55.000 0.00 0.00 34.27 3.77
32 33 0.036388 GGACCGCTGAAGTCATCCAA 60.036 55.000 0.00 0.00 35.89 3.53
33 34 1.191489 TGGACCGCTGAAGTCATCCA 61.191 55.000 0.00 0.00 35.89 3.41
34 35 0.460987 CTGGACCGCTGAAGTCATCC 60.461 60.000 0.00 0.00 35.89 3.51
35 36 0.532573 TCTGGACCGCTGAAGTCATC 59.467 55.000 0.00 0.00 35.89 2.92
48 49 1.961277 CCAACCGTGCTGTCTGGAC 60.961 63.158 0.00 0.00 0.00 4.02
64 65 0.249120 AATCACTCGCATTCGTCCCA 59.751 50.000 0.00 0.00 36.96 4.37
65 66 1.369625 AAATCACTCGCATTCGTCCC 58.630 50.000 0.00 0.00 36.96 4.46
67 68 3.001330 CCCTTAAATCACTCGCATTCGTC 59.999 47.826 0.00 0.00 36.96 4.20
70 71 3.001330 CGACCCTTAAATCACTCGCATTC 59.999 47.826 0.00 0.00 0.00 2.67
71 72 2.936498 CGACCCTTAAATCACTCGCATT 59.064 45.455 0.00 0.00 0.00 3.56
74 75 1.287425 CCGACCCTTAAATCACTCGC 58.713 55.000 0.00 0.00 0.00 5.03
77 78 0.611714 ACGCCGACCCTTAAATCACT 59.388 50.000 0.00 0.00 0.00 3.41
79 80 1.002201 TCAACGCCGACCCTTAAATCA 59.998 47.619 0.00 0.00 0.00 2.57
81 82 1.276989 TCTCAACGCCGACCCTTAAAT 59.723 47.619 0.00 0.00 0.00 1.40
85 86 1.079127 CATCTCAACGCCGACCCTT 60.079 57.895 0.00 0.00 0.00 3.95
95 96 2.789409 ACAGGTAAGGGCATCTCAAC 57.211 50.000 0.00 0.00 0.00 3.18
119 120 1.097547 GTGCGCACCCATGATAGCTT 61.098 55.000 30.12 0.00 0.00 3.74
333 335 0.520847 TACGCGTGTGGATTCGTACA 59.479 50.000 24.59 0.00 36.50 2.90
448 450 8.021396 GCATTTTTACTCGTTTCTCTAACCAAT 58.979 33.333 0.00 0.00 32.92 3.16
588 590 0.685097 ACTTGCTTCCTCCGCAGTAA 59.315 50.000 0.00 0.00 38.80 2.24
767 770 5.754406 TGCGCTACACTTCTTTACACTTTTA 59.246 36.000 9.73 0.00 0.00 1.52
803 806 4.584327 TTATCCGATGTGATCATGTCGT 57.416 40.909 22.76 13.08 34.06 4.34
1961 3289 5.912149 TCCAACCTGGAAGATATGCTATT 57.088 39.130 0.00 0.00 45.00 1.73
1987 3324 0.813210 GAGCCAAGATCAGCTTCCCG 60.813 60.000 6.40 0.00 40.11 5.14
2116 3474 0.098376 CAGAAAGCAGCTCGGCAATC 59.902 55.000 0.00 0.00 35.83 2.67
2200 3558 3.803231 GCTCTGCACTTCATCTCAGTATG 59.197 47.826 0.00 0.00 37.54 2.39
2218 3576 2.641305 GCAATGATGGAGTTCAGCTCT 58.359 47.619 0.00 0.00 43.62 4.09
2331 3690 0.548682 ACTGTGGAAGGAGATGGCCT 60.549 55.000 3.32 0.00 40.93 5.19
2400 3765 3.947196 CCAGAGCATTTGTGGCTATTACA 59.053 43.478 0.00 0.00 42.78 2.41
2442 3807 7.510675 TTATGAGGGAGAAAATGGTACTCTT 57.489 36.000 0.00 0.00 0.00 2.85
2458 3823 5.394553 GGAAATTGGTTCTTGCTTATGAGGG 60.395 44.000 0.00 0.00 36.40 4.30
2476 3847 7.801104 TGCTTTCTTTTTCTTTAGGGGAAATT 58.199 30.769 0.00 0.00 33.51 1.82
2477 3848 7.373617 TGCTTTCTTTTTCTTTAGGGGAAAT 57.626 32.000 0.00 0.00 33.51 2.17
2478 3849 6.800072 TGCTTTCTTTTTCTTTAGGGGAAA 57.200 33.333 0.00 0.00 0.00 3.13
2479 3850 6.609616 TCTTGCTTTCTTTTTCTTTAGGGGAA 59.390 34.615 0.00 0.00 0.00 3.97
2480 3851 6.133356 TCTTGCTTTCTTTTTCTTTAGGGGA 58.867 36.000 0.00 0.00 0.00 4.81
2481 3852 6.405278 TCTTGCTTTCTTTTTCTTTAGGGG 57.595 37.500 0.00 0.00 0.00 4.79
2482 3853 6.701841 GGTTCTTGCTTTCTTTTTCTTTAGGG 59.298 38.462 0.00 0.00 0.00 3.53
2483 3854 7.264947 TGGTTCTTGCTTTCTTTTTCTTTAGG 58.735 34.615 0.00 0.00 0.00 2.69
2484 3855 8.702163 TTGGTTCTTGCTTTCTTTTTCTTTAG 57.298 30.769 0.00 0.00 0.00 1.85
2485 3856 9.665719 AATTGGTTCTTGCTTTCTTTTTCTTTA 57.334 25.926 0.00 0.00 0.00 1.85
2486 3857 8.565896 AATTGGTTCTTGCTTTCTTTTTCTTT 57.434 26.923 0.00 0.00 0.00 2.52
2487 3858 7.823799 TGAATTGGTTCTTGCTTTCTTTTTCTT 59.176 29.630 0.00 0.00 35.33 2.52
2488 3859 7.278646 GTGAATTGGTTCTTGCTTTCTTTTTCT 59.721 33.333 0.00 0.00 35.33 2.52
2489 3860 7.064490 TGTGAATTGGTTCTTGCTTTCTTTTTC 59.936 33.333 0.00 0.00 35.33 2.29
2490 3861 6.878389 TGTGAATTGGTTCTTGCTTTCTTTTT 59.122 30.769 0.00 0.00 35.33 1.94
2491 3862 6.405538 TGTGAATTGGTTCTTGCTTTCTTTT 58.594 32.000 0.00 0.00 35.33 2.27
2492 3863 5.976458 TGTGAATTGGTTCTTGCTTTCTTT 58.024 33.333 0.00 0.00 35.33 2.52
2493 3864 5.596836 TGTGAATTGGTTCTTGCTTTCTT 57.403 34.783 0.00 0.00 35.33 2.52
2494 3865 5.127682 ACTTGTGAATTGGTTCTTGCTTTCT 59.872 36.000 0.00 0.00 35.33 2.52
2495 3866 5.232838 CACTTGTGAATTGGTTCTTGCTTTC 59.767 40.000 0.00 0.00 35.33 2.62
2496 3867 5.111293 CACTTGTGAATTGGTTCTTGCTTT 58.889 37.500 0.00 0.00 35.33 3.51
2497 3868 4.685924 CACTTGTGAATTGGTTCTTGCTT 58.314 39.130 0.00 0.00 35.33 3.91
2498 3869 3.491447 GCACTTGTGAATTGGTTCTTGCT 60.491 43.478 4.79 0.00 35.33 3.91
2499 3870 2.796593 GCACTTGTGAATTGGTTCTTGC 59.203 45.455 4.79 0.00 35.33 4.01
2500 3871 4.044336 TGCACTTGTGAATTGGTTCTTG 57.956 40.909 4.79 0.00 35.33 3.02
2501 3872 3.953612 TCTGCACTTGTGAATTGGTTCTT 59.046 39.130 4.79 0.00 35.33 2.52
2502 3873 3.554934 TCTGCACTTGTGAATTGGTTCT 58.445 40.909 4.79 0.00 35.33 3.01
2503 3874 3.988379 TCTGCACTTGTGAATTGGTTC 57.012 42.857 4.79 0.00 34.85 3.62
2504 3875 4.734398 TTTCTGCACTTGTGAATTGGTT 57.266 36.364 4.79 0.00 0.00 3.67
2505 3876 4.734398 TTTTCTGCACTTGTGAATTGGT 57.266 36.364 4.79 0.00 0.00 3.67
2506 3877 4.508861 CCTTTTTCTGCACTTGTGAATTGG 59.491 41.667 4.79 0.00 0.00 3.16
2507 3878 4.025480 GCCTTTTTCTGCACTTGTGAATTG 60.025 41.667 4.79 0.00 0.00 2.32
2548 3919 1.980765 TCTATGCATCCCCATGTCCTC 59.019 52.381 0.19 0.00 31.86 3.71
2555 3926 2.575735 TGAGTTGTTCTATGCATCCCCA 59.424 45.455 0.19 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.