Multiple sequence alignment - TraesCS5D01G093100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G093100 chr5D 100.000 3086 0 0 1 3086 101760110 101757025 0.000000e+00 5699
1 TraesCS5D01G093100 chr5D 99.793 482 0 1 2606 3086 565205912 565206393 0.000000e+00 883
2 TraesCS5D01G093100 chr5D 99.378 482 2 1 2606 3086 501392111 501391630 0.000000e+00 872
3 TraesCS5D01G093100 chr5B 94.797 1922 47 24 712 2605 110420292 110418396 0.000000e+00 2946
4 TraesCS5D01G093100 chr5B 87.189 562 46 15 76 615 110421261 110420704 1.570000e-172 616
5 TraesCS5D01G093100 chr5A 92.372 2045 64 46 625 2605 98429028 98431044 0.000000e+00 2828
6 TraesCS5D01G093100 chr5A 91.652 587 33 11 1 573 98428445 98429029 0.000000e+00 798
7 TraesCS5D01G093100 chr4D 99.378 482 2 1 2606 3086 145626867 145627348 0.000000e+00 872
8 TraesCS5D01G093100 chr4D 99.378 482 2 1 2606 3086 308484502 308484021 0.000000e+00 872
9 TraesCS5D01G093100 chr4D 99.378 482 2 1 2606 3086 361842259 361842740 0.000000e+00 872
10 TraesCS5D01G093100 chr4D 99.378 482 2 1 2606 3086 439832478 439831997 0.000000e+00 872
11 TraesCS5D01G093100 chr4D 99.375 480 2 1 2606 3084 385580338 385580817 0.000000e+00 869
12 TraesCS5D01G093100 chr3D 99.170 482 3 1 2606 3086 29299848 29299367 0.000000e+00 867
13 TraesCS5D01G093100 chr2D 98.566 488 6 1 2600 3086 477418885 477419372 0.000000e+00 861


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G093100 chr5D 101757025 101760110 3085 True 5699 5699 100.000 1 3086 1 chr5D.!!$R1 3085
1 TraesCS5D01G093100 chr5B 110418396 110421261 2865 True 1781 2946 90.993 76 2605 2 chr5B.!!$R1 2529
2 TraesCS5D01G093100 chr5A 98428445 98431044 2599 False 1813 2828 92.012 1 2605 2 chr5A.!!$F1 2604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 1299 0.3199 GGATGATGGATGGACGGTCG 60.32 60.0 1.43 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2790 3207 0.03438 TCGAGGAGTTCCGATCCAGT 60.034 55.0 0.0 0.0 42.08 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 124 4.069304 CCAAAGATCCACCAACTCGTTTA 58.931 43.478 0.00 0.00 0.00 2.01
126 131 3.118334 TCCACCAACTCGTTTACCTGAAA 60.118 43.478 0.00 0.00 0.00 2.69
127 132 3.628487 CCACCAACTCGTTTACCTGAAAA 59.372 43.478 0.00 0.00 0.00 2.29
129 134 5.449304 CACCAACTCGTTTACCTGAAAATC 58.551 41.667 0.00 0.00 0.00 2.17
135 141 7.562454 ACTCGTTTACCTGAAAATCTTTCAA 57.438 32.000 3.62 0.00 0.00 2.69
175 181 9.617975 CTCTTTATCTCTTGTTGATTTTTCACC 57.382 33.333 0.00 0.00 0.00 4.02
176 182 9.130661 TCTTTATCTCTTGTTGATTTTTCACCA 57.869 29.630 0.00 0.00 0.00 4.17
177 183 9.748708 CTTTATCTCTTGTTGATTTTTCACCAA 57.251 29.630 0.00 0.00 0.00 3.67
181 187 9.865321 ATCTCTTGTTGATTTTTCACCAATATG 57.135 29.630 0.00 0.00 0.00 1.78
182 188 8.859090 TCTCTTGTTGATTTTTCACCAATATGT 58.141 29.630 0.00 0.00 0.00 2.29
183 189 8.815141 TCTTGTTGATTTTTCACCAATATGTG 57.185 30.769 0.00 0.00 37.59 3.21
195 209 6.872920 TCACCAATATGTGAAAATTAAGGGC 58.127 36.000 0.00 0.00 42.06 5.19
196 210 6.667414 TCACCAATATGTGAAAATTAAGGGCT 59.333 34.615 0.00 0.00 42.06 5.19
197 211 7.836685 TCACCAATATGTGAAAATTAAGGGCTA 59.163 33.333 0.00 0.00 42.06 3.93
198 212 7.920682 CACCAATATGTGAAAATTAAGGGCTAC 59.079 37.037 0.00 0.00 38.55 3.58
199 213 7.138736 CCAATATGTGAAAATTAAGGGCTACG 58.861 38.462 0.00 0.00 0.00 3.51
200 214 4.632538 ATGTGAAAATTAAGGGCTACGC 57.367 40.909 0.00 0.00 0.00 4.42
220 236 6.203808 ACGCCCAAAAATCTTAGGTAATTC 57.796 37.500 0.00 0.00 0.00 2.17
232 248 2.680577 AGGTAATTCCACGTCGTTGTC 58.319 47.619 0.00 0.00 39.02 3.18
362 380 2.842496 TGTCCCTTGCTCATTCTCTCAT 59.158 45.455 0.00 0.00 0.00 2.90
388 406 3.449746 TGTTTTCCTTGGGTATGAGGG 57.550 47.619 0.00 0.00 33.73 4.30
417 435 6.459670 TTTCGCCAGATTATGTAGAGTGTA 57.540 37.500 0.00 0.00 0.00 2.90
420 438 5.238868 TCGCCAGATTATGTAGAGTGTACTC 59.761 44.000 3.85 3.85 43.17 2.59
453 478 6.291377 TCATCACCCAAGTTAATGCTAGATC 58.709 40.000 0.00 0.00 0.00 2.75
512 537 3.356290 TGCTCATCACTCAGCTGTACTA 58.644 45.455 14.67 0.00 36.53 1.82
521 546 7.241042 TCACTCAGCTGTACTAAAGGTTTAT 57.759 36.000 14.67 0.00 0.00 1.40
558 583 2.024369 TCTCTATCACTGGGCTGTGGTA 60.024 50.000 10.25 7.41 38.40 3.25
587 612 6.499106 AATGACTTGGAATTTCCCTTTTGT 57.501 33.333 12.90 4.64 35.03 2.83
615 640 0.401738 AGGTGTGCTGCAGGTTATGT 59.598 50.000 17.12 0.00 0.00 2.29
659 709 8.492673 TTTGATGCCAAGTAGAAATACAGTAG 57.507 34.615 0.00 0.00 33.23 2.57
660 710 7.182817 TGATGCCAAGTAGAAATACAGTAGT 57.817 36.000 0.00 0.00 0.00 2.73
661 711 8.301252 TGATGCCAAGTAGAAATACAGTAGTA 57.699 34.615 0.00 0.00 34.10 1.82
662 712 8.924303 TGATGCCAAGTAGAAATACAGTAGTAT 58.076 33.333 0.00 0.00 42.66 2.12
665 715 9.192642 TGCCAAGTAGAAATACAGTAGTATGTA 57.807 33.333 0.00 0.00 40.00 2.29
676 742 9.857656 AATACAGTAGTATGTAGTTGCCTAGTA 57.142 33.333 0.00 0.00 40.00 1.82
762 1102 4.285292 CCGCAATGAATAAAGCAGCTAAG 58.715 43.478 0.00 0.00 0.00 2.18
763 1103 4.285292 CGCAATGAATAAAGCAGCTAAGG 58.715 43.478 0.00 0.00 0.00 2.69
764 1104 4.614946 GCAATGAATAAAGCAGCTAAGGG 58.385 43.478 0.00 0.00 0.00 3.95
766 1106 5.163519 GCAATGAATAAAGCAGCTAAGGGAA 60.164 40.000 0.00 0.00 0.00 3.97
819 1187 9.823098 CTTTTTCTTGTCTGAAGATTATCACTG 57.177 33.333 0.00 0.00 0.00 3.66
820 1188 6.974932 TTCTTGTCTGAAGATTATCACTGC 57.025 37.500 0.00 0.00 0.00 4.40
821 1189 5.423015 TCTTGTCTGAAGATTATCACTGCC 58.577 41.667 0.00 0.00 0.00 4.85
882 1257 7.176515 TGACTTGCAAGGAGCTAATTTGATTTA 59.823 33.333 29.18 0.00 45.94 1.40
914 1289 2.060275 CCTTCCTGGATGGATGATGGA 58.940 52.381 21.04 0.00 45.68 3.41
915 1290 2.648304 CCTTCCTGGATGGATGATGGAT 59.352 50.000 21.04 0.00 45.68 3.41
916 1291 3.561528 CCTTCCTGGATGGATGATGGATG 60.562 52.174 21.04 0.00 45.68 3.51
917 1292 1.990327 TCCTGGATGGATGATGGATGG 59.010 52.381 0.00 0.00 40.56 3.51
918 1293 1.990327 CCTGGATGGATGATGGATGGA 59.010 52.381 0.00 0.00 38.35 3.41
919 1294 2.290768 CCTGGATGGATGATGGATGGAC 60.291 54.545 0.00 0.00 38.35 4.02
920 1295 1.348696 TGGATGGATGATGGATGGACG 59.651 52.381 0.00 0.00 0.00 4.79
921 1296 1.339438 GGATGGATGATGGATGGACGG 60.339 57.143 0.00 0.00 0.00 4.79
922 1297 1.349026 GATGGATGATGGATGGACGGT 59.651 52.381 0.00 0.00 0.00 4.83
923 1298 0.758734 TGGATGATGGATGGACGGTC 59.241 55.000 0.00 0.00 0.00 4.79
924 1299 0.319900 GGATGATGGATGGACGGTCG 60.320 60.000 1.43 0.00 0.00 4.79
925 1300 0.319900 GATGATGGATGGACGGTCGG 60.320 60.000 1.43 0.00 0.00 4.79
926 1301 0.759060 ATGATGGATGGACGGTCGGA 60.759 55.000 1.43 0.00 0.00 4.55
2087 2471 3.554692 GATGAACGGCCGCTGACG 61.555 66.667 28.58 0.21 39.67 4.35
2301 2689 1.368641 TTTCGGCCTGTCATTGATCG 58.631 50.000 0.00 0.00 0.00 3.69
2316 2704 1.933181 TGATCGTGCCAATCATCGTTC 59.067 47.619 0.00 0.00 0.00 3.95
2386 2775 1.358725 ATTTGATCGTGTCGTGGGCG 61.359 55.000 0.00 0.00 39.92 6.13
2403 2792 2.053627 GGCGTCAAAATGCAACTTCTG 58.946 47.619 0.00 0.00 39.30 3.02
2434 2823 0.102300 CATACGATGTGACCAGGCGA 59.898 55.000 0.00 0.00 0.00 5.54
2438 2827 1.148157 CGATGTGACCAGGCGACATC 61.148 60.000 16.83 16.83 41.67 3.06
2499 2915 2.268762 TGTAGTGACCAATGCAGCAA 57.731 45.000 0.00 0.00 0.00 3.91
2605 3022 7.775053 TCATTTAACAAGAAAGGCCACTAAT 57.225 32.000 5.01 0.00 0.00 1.73
2606 3023 7.601856 TCATTTAACAAGAAAGGCCACTAATG 58.398 34.615 5.01 7.88 0.00 1.90
2607 3024 6.969993 TTTAACAAGAAAGGCCACTAATGT 57.030 33.333 5.01 0.95 0.00 2.71
2608 3025 8.519526 CATTTAACAAGAAAGGCCACTAATGTA 58.480 33.333 5.01 0.00 0.00 2.29
2609 3026 7.681939 TTAACAAGAAAGGCCACTAATGTAG 57.318 36.000 5.01 0.00 0.00 2.74
2610 3027 5.499004 ACAAGAAAGGCCACTAATGTAGA 57.501 39.130 5.01 0.00 0.00 2.59
2611 3028 5.876357 ACAAGAAAGGCCACTAATGTAGAA 58.124 37.500 5.01 0.00 0.00 2.10
2612 3029 5.940470 ACAAGAAAGGCCACTAATGTAGAAG 59.060 40.000 5.01 0.00 0.00 2.85
2613 3030 5.104259 AGAAAGGCCACTAATGTAGAAGG 57.896 43.478 5.01 0.00 0.00 3.46
2614 3031 4.536489 AGAAAGGCCACTAATGTAGAAGGT 59.464 41.667 5.01 0.00 0.00 3.50
2615 3032 4.929146 AAGGCCACTAATGTAGAAGGTT 57.071 40.909 5.01 0.00 0.00 3.50
2616 3033 6.214819 AGAAAGGCCACTAATGTAGAAGGTTA 59.785 38.462 5.01 0.00 0.00 2.85
2617 3034 6.576778 AAGGCCACTAATGTAGAAGGTTAT 57.423 37.500 5.01 0.00 0.00 1.89
2618 3035 5.930135 AGGCCACTAATGTAGAAGGTTATG 58.070 41.667 5.01 0.00 0.00 1.90
2619 3036 4.515567 GGCCACTAATGTAGAAGGTTATGC 59.484 45.833 0.00 0.00 0.00 3.14
2620 3037 5.123227 GCCACTAATGTAGAAGGTTATGCA 58.877 41.667 0.00 0.00 0.00 3.96
2621 3038 5.588648 GCCACTAATGTAGAAGGTTATGCAA 59.411 40.000 0.00 0.00 0.00 4.08
2622 3039 6.458342 GCCACTAATGTAGAAGGTTATGCAAC 60.458 42.308 0.00 0.00 0.00 4.17
2623 3040 6.823689 CCACTAATGTAGAAGGTTATGCAACT 59.176 38.462 0.00 0.00 34.88 3.16
2624 3041 7.011482 CCACTAATGTAGAAGGTTATGCAACTC 59.989 40.741 0.00 0.00 34.88 3.01
2625 3042 7.549134 CACTAATGTAGAAGGTTATGCAACTCA 59.451 37.037 0.00 0.00 34.88 3.41
2626 3043 6.743575 AATGTAGAAGGTTATGCAACTCAC 57.256 37.500 0.00 0.00 34.88 3.51
2627 3044 4.242475 TGTAGAAGGTTATGCAACTCACG 58.758 43.478 0.00 0.00 34.88 4.35
2628 3045 3.678056 AGAAGGTTATGCAACTCACGA 57.322 42.857 0.00 0.00 34.88 4.35
2629 3046 4.207891 AGAAGGTTATGCAACTCACGAT 57.792 40.909 0.00 0.00 34.88 3.73
2630 3047 5.339008 AGAAGGTTATGCAACTCACGATA 57.661 39.130 0.00 0.00 34.88 2.92
2631 3048 5.918608 AGAAGGTTATGCAACTCACGATAT 58.081 37.500 0.00 0.00 34.88 1.63
2632 3049 7.050970 AGAAGGTTATGCAACTCACGATATA 57.949 36.000 0.00 0.00 34.88 0.86
2633 3050 7.671302 AGAAGGTTATGCAACTCACGATATAT 58.329 34.615 0.00 0.00 34.88 0.86
2634 3051 8.150945 AGAAGGTTATGCAACTCACGATATATT 58.849 33.333 0.00 0.00 34.88 1.28
2635 3052 7.658179 AGGTTATGCAACTCACGATATATTG 57.342 36.000 0.00 0.00 34.88 1.90
2636 3053 7.441836 AGGTTATGCAACTCACGATATATTGA 58.558 34.615 6.98 0.00 34.88 2.57
2637 3054 8.097038 AGGTTATGCAACTCACGATATATTGAT 58.903 33.333 6.98 0.00 34.88 2.57
2638 3055 8.383619 GGTTATGCAACTCACGATATATTGATC 58.616 37.037 6.98 0.00 34.88 2.92
2650 3067 6.881017 CGATATATTGATCGGGTGCAATATG 58.119 40.000 14.83 0.09 43.65 1.78
2651 3068 4.970662 ATATTGATCGGGTGCAATATGC 57.029 40.909 0.00 0.00 42.79 3.14
2652 3069 8.846055 CGATATATTGATCGGGTGCAATATGCA 61.846 40.741 14.83 0.00 46.52 3.96
2673 3090 8.997621 ATGCACGTATATATAAGTACAAAGGG 57.002 34.615 13.52 2.19 0.00 3.95
2674 3091 7.954835 TGCACGTATATATAAGTACAAAGGGT 58.045 34.615 10.46 0.00 0.00 4.34
2675 3092 9.076781 TGCACGTATATATAAGTACAAAGGGTA 57.923 33.333 10.46 0.00 0.00 3.69
2676 3093 9.565213 GCACGTATATATAAGTACAAAGGGTAG 57.435 37.037 10.46 0.00 31.13 3.18
2677 3094 9.565213 CACGTATATATAAGTACAAAGGGTAGC 57.435 37.037 10.46 0.00 31.13 3.58
2678 3095 8.743714 ACGTATATATAAGTACAAAGGGTAGCC 58.256 37.037 9.27 1.60 31.13 3.93
2679 3096 8.742777 CGTATATATAAGTACAAAGGGTAGCCA 58.257 37.037 14.62 0.00 31.13 4.75
2680 3097 9.866798 GTATATATAAGTACAAAGGGTAGCCAC 57.133 37.037 14.62 1.68 31.13 5.01
2681 3098 2.467566 AAGTACAAAGGGTAGCCACG 57.532 50.000 14.62 3.17 31.13 4.94
2682 3099 1.345063 AGTACAAAGGGTAGCCACGT 58.655 50.000 14.62 9.28 31.13 4.49
2683 3100 1.274447 AGTACAAAGGGTAGCCACGTC 59.726 52.381 14.62 0.00 31.13 4.34
2684 3101 0.609662 TACAAAGGGTAGCCACGTCC 59.390 55.000 14.62 0.00 0.00 4.79
2685 3102 1.125711 ACAAAGGGTAGCCACGTCCT 61.126 55.000 14.62 0.00 0.00 3.85
2686 3103 0.391263 CAAAGGGTAGCCACGTCCTC 60.391 60.000 14.62 0.00 0.00 3.71
2687 3104 0.834687 AAAGGGTAGCCACGTCCTCA 60.835 55.000 14.62 0.00 0.00 3.86
2688 3105 0.834687 AAGGGTAGCCACGTCCTCAA 60.835 55.000 14.62 0.00 0.00 3.02
2689 3106 1.079336 GGGTAGCCACGTCCTCAAC 60.079 63.158 5.96 0.00 0.00 3.18
2690 3107 1.542187 GGGTAGCCACGTCCTCAACT 61.542 60.000 5.96 0.00 0.00 3.16
2691 3108 1.180029 GGTAGCCACGTCCTCAACTA 58.820 55.000 0.00 0.00 0.00 2.24
2692 3109 1.755380 GGTAGCCACGTCCTCAACTAT 59.245 52.381 0.00 0.00 0.00 2.12
2693 3110 2.954318 GGTAGCCACGTCCTCAACTATA 59.046 50.000 0.00 0.00 0.00 1.31
2694 3111 3.243334 GGTAGCCACGTCCTCAACTATAC 60.243 52.174 0.00 0.00 0.00 1.47
2695 3112 2.453521 AGCCACGTCCTCAACTATACA 58.546 47.619 0.00 0.00 0.00 2.29
2696 3113 3.031736 AGCCACGTCCTCAACTATACAT 58.968 45.455 0.00 0.00 0.00 2.29
2697 3114 3.123804 GCCACGTCCTCAACTATACATG 58.876 50.000 0.00 0.00 0.00 3.21
2698 3115 3.717707 CCACGTCCTCAACTATACATGG 58.282 50.000 0.00 0.00 0.00 3.66
2699 3116 3.383505 CCACGTCCTCAACTATACATGGA 59.616 47.826 0.00 0.00 0.00 3.41
2700 3117 4.142026 CCACGTCCTCAACTATACATGGAA 60.142 45.833 0.00 0.00 0.00 3.53
2701 3118 5.043903 CACGTCCTCAACTATACATGGAAG 58.956 45.833 0.00 0.00 0.00 3.46
2702 3119 4.099573 ACGTCCTCAACTATACATGGAAGG 59.900 45.833 0.00 0.00 0.00 3.46
2703 3120 4.341235 CGTCCTCAACTATACATGGAAGGA 59.659 45.833 0.00 0.00 0.00 3.36
2704 3121 5.508153 CGTCCTCAACTATACATGGAAGGAG 60.508 48.000 0.00 0.00 0.00 3.69
2705 3122 4.901849 TCCTCAACTATACATGGAAGGAGG 59.098 45.833 0.00 2.69 40.51 4.30
2706 3123 4.901849 CCTCAACTATACATGGAAGGAGGA 59.098 45.833 7.56 0.00 41.42 3.71
2707 3124 5.011533 CCTCAACTATACATGGAAGGAGGAG 59.988 48.000 7.56 1.46 41.42 3.69
2708 3125 4.901849 TCAACTATACATGGAAGGAGGAGG 59.098 45.833 0.00 0.00 0.00 4.30
2709 3126 3.863086 ACTATACATGGAAGGAGGAGGG 58.137 50.000 0.00 0.00 0.00 4.30
2710 3127 1.439543 ATACATGGAAGGAGGAGGGC 58.560 55.000 0.00 0.00 0.00 5.19
2711 3128 0.343372 TACATGGAAGGAGGAGGGCT 59.657 55.000 0.00 0.00 0.00 5.19
2712 3129 0.551131 ACATGGAAGGAGGAGGGCTT 60.551 55.000 0.00 0.00 0.00 4.35
2713 3130 0.106819 CATGGAAGGAGGAGGGCTTG 60.107 60.000 0.00 0.00 0.00 4.01
2714 3131 0.551131 ATGGAAGGAGGAGGGCTTGT 60.551 55.000 0.00 0.00 0.00 3.16
2715 3132 0.772124 TGGAAGGAGGAGGGCTTGTT 60.772 55.000 0.00 0.00 0.00 2.83
2716 3133 0.322906 GGAAGGAGGAGGGCTTGTTG 60.323 60.000 0.00 0.00 0.00 3.33
2717 3134 0.402121 GAAGGAGGAGGGCTTGTTGT 59.598 55.000 0.00 0.00 0.00 3.32
2718 3135 1.628846 GAAGGAGGAGGGCTTGTTGTA 59.371 52.381 0.00 0.00 0.00 2.41
2719 3136 0.984995 AGGAGGAGGGCTTGTTGTAC 59.015 55.000 0.00 0.00 0.00 2.90
2720 3137 0.690762 GGAGGAGGGCTTGTTGTACA 59.309 55.000 0.00 0.00 0.00 2.90
2721 3138 1.073284 GGAGGAGGGCTTGTTGTACAA 59.927 52.381 3.59 3.59 36.54 2.41
2753 3170 8.144478 ACACATATGTATCTACATCTCAACACC 58.856 37.037 8.32 0.00 45.11 4.16
2754 3171 7.600375 CACATATGTATCTACATCTCAACACCC 59.400 40.741 8.32 0.00 45.11 4.61
2755 3172 5.552870 ATGTATCTACATCTCAACACCCC 57.447 43.478 0.00 0.00 42.96 4.95
2756 3173 3.709653 TGTATCTACATCTCAACACCCCC 59.290 47.826 0.00 0.00 0.00 5.40
2776 3193 2.434884 CAGTCGAAGCGGCACCAT 60.435 61.111 1.45 0.00 32.13 3.55
2777 3194 2.434884 AGTCGAAGCGGCACCATG 60.435 61.111 1.45 0.00 32.13 3.66
2778 3195 3.499737 GTCGAAGCGGCACCATGG 61.500 66.667 11.19 11.19 0.00 3.66
2779 3196 4.015406 TCGAAGCGGCACCATGGT 62.015 61.111 13.00 13.00 0.00 3.55
2780 3197 3.499737 CGAAGCGGCACCATGGTC 61.500 66.667 16.53 10.07 0.00 4.02
2781 3198 3.499737 GAAGCGGCACCATGGTCG 61.500 66.667 16.53 18.00 0.00 4.79
2782 3199 3.950794 GAAGCGGCACCATGGTCGA 62.951 63.158 25.47 0.00 0.00 4.20
2783 3200 4.760047 AGCGGCACCATGGTCGAC 62.760 66.667 25.47 17.52 0.00 4.20
2787 3204 3.047280 GCACCATGGTCGACGCAA 61.047 61.111 16.53 0.00 0.00 4.85
2788 3205 2.612567 GCACCATGGTCGACGCAAA 61.613 57.895 16.53 0.00 0.00 3.68
2789 3206 1.497278 CACCATGGTCGACGCAAAG 59.503 57.895 16.53 0.00 0.00 2.77
2790 3207 0.948623 CACCATGGTCGACGCAAAGA 60.949 55.000 16.53 0.00 0.00 2.52
2791 3208 0.949105 ACCATGGTCGACGCAAAGAC 60.949 55.000 13.00 0.00 36.70 3.01
2792 3209 0.670546 CCATGGTCGACGCAAAGACT 60.671 55.000 9.92 0.00 37.52 3.24
2793 3210 0.439985 CATGGTCGACGCAAAGACTG 59.560 55.000 9.92 0.47 37.52 3.51
2794 3211 0.670546 ATGGTCGACGCAAAGACTGG 60.671 55.000 9.92 0.00 37.52 4.00
2795 3212 1.006571 GGTCGACGCAAAGACTGGA 60.007 57.895 9.92 0.00 37.52 3.86
2796 3213 0.389948 GGTCGACGCAAAGACTGGAT 60.390 55.000 9.92 0.00 37.52 3.41
2797 3214 0.992802 GTCGACGCAAAGACTGGATC 59.007 55.000 0.00 0.00 34.74 3.36
2798 3215 0.456142 TCGACGCAAAGACTGGATCG 60.456 55.000 0.00 0.00 0.00 3.69
2799 3216 1.413767 CGACGCAAAGACTGGATCGG 61.414 60.000 0.00 0.00 0.00 4.18
2800 3217 0.108804 GACGCAAAGACTGGATCGGA 60.109 55.000 0.00 0.00 0.00 4.55
2801 3218 0.320374 ACGCAAAGACTGGATCGGAA 59.680 50.000 0.00 0.00 0.00 4.30
2802 3219 0.721718 CGCAAAGACTGGATCGGAAC 59.278 55.000 0.00 0.00 0.00 3.62
2803 3220 1.673033 CGCAAAGACTGGATCGGAACT 60.673 52.381 0.00 0.00 0.00 3.01
2804 3221 2.003301 GCAAAGACTGGATCGGAACTC 58.997 52.381 0.00 0.00 0.00 3.01
2805 3222 2.622436 CAAAGACTGGATCGGAACTCC 58.378 52.381 0.00 0.00 0.00 3.85
2806 3223 2.234908 CAAAGACTGGATCGGAACTCCT 59.765 50.000 0.00 0.00 33.69 3.69
2807 3224 1.770294 AGACTGGATCGGAACTCCTC 58.230 55.000 0.00 0.00 33.69 3.71
2808 3225 0.382515 GACTGGATCGGAACTCCTCG 59.617 60.000 0.00 0.00 33.69 4.63
2809 3226 0.034380 ACTGGATCGGAACTCCTCGA 60.034 55.000 0.00 0.00 39.79 4.04
2810 3227 1.103803 CTGGATCGGAACTCCTCGAA 58.896 55.000 0.00 0.00 38.92 3.71
2811 3228 1.476891 CTGGATCGGAACTCCTCGAAA 59.523 52.381 0.00 0.00 38.92 3.46
2812 3229 1.476891 TGGATCGGAACTCCTCGAAAG 59.523 52.381 0.00 0.00 38.92 2.62
2813 3230 1.749634 GGATCGGAACTCCTCGAAAGA 59.250 52.381 1.70 0.00 38.92 2.52
2814 3231 2.479901 GGATCGGAACTCCTCGAAAGAC 60.480 54.545 1.70 0.00 38.92 3.01
2815 3232 0.520404 TCGGAACTCCTCGAAAGACG 59.480 55.000 1.70 3.93 44.09 4.18
2816 3233 1.071567 CGGAACTCCTCGAAAGACGC 61.072 60.000 1.70 0.00 42.26 5.19
2817 3234 1.071567 GGAACTCCTCGAAAGACGCG 61.072 60.000 3.53 3.53 42.26 6.01
2818 3235 1.071567 GAACTCCTCGAAAGACGCGG 61.072 60.000 12.47 0.00 46.69 6.46
2819 3236 1.803366 AACTCCTCGAAAGACGCGGT 61.803 55.000 12.47 0.00 45.66 5.68
2820 3237 0.957395 ACTCCTCGAAAGACGCGGTA 60.957 55.000 12.47 0.00 45.66 4.02
2821 3238 0.248134 CTCCTCGAAAGACGCGGTAG 60.248 60.000 12.47 0.00 45.66 3.18
2822 3239 0.674581 TCCTCGAAAGACGCGGTAGA 60.675 55.000 12.47 0.00 45.66 2.59
2823 3240 0.522915 CCTCGAAAGACGCGGTAGAC 60.523 60.000 12.47 0.00 41.31 2.59
2824 3241 0.167470 CTCGAAAGACGCGGTAGACA 59.833 55.000 12.47 0.00 42.26 3.41
2825 3242 0.592637 TCGAAAGACGCGGTAGACAA 59.407 50.000 12.47 0.00 42.26 3.18
2826 3243 0.982673 CGAAAGACGCGGTAGACAAG 59.017 55.000 12.47 0.00 34.51 3.16
2827 3244 0.714439 GAAAGACGCGGTAGACAAGC 59.286 55.000 12.47 0.00 0.00 4.01
2828 3245 0.669625 AAAGACGCGGTAGACAAGCC 60.670 55.000 12.47 0.00 0.00 4.35
2829 3246 2.502692 AAGACGCGGTAGACAAGCCC 62.503 60.000 12.47 0.00 0.00 5.19
2830 3247 2.995574 ACGCGGTAGACAAGCCCT 60.996 61.111 12.47 0.00 0.00 5.19
2831 3248 2.264794 CGCGGTAGACAAGCCCTT 59.735 61.111 0.00 0.00 0.00 3.95
2832 3249 1.375523 CGCGGTAGACAAGCCCTTT 60.376 57.895 0.00 0.00 0.00 3.11
2833 3250 1.635663 CGCGGTAGACAAGCCCTTTG 61.636 60.000 0.00 0.00 42.68 2.77
2843 3260 3.498927 CAAGCCCTTTGTCATGATGTC 57.501 47.619 0.00 0.00 31.92 3.06
2844 3261 2.821378 CAAGCCCTTTGTCATGATGTCA 59.179 45.455 0.00 0.00 31.92 3.58
2845 3262 2.719739 AGCCCTTTGTCATGATGTCAG 58.280 47.619 0.00 0.00 0.00 3.51
2846 3263 1.133790 GCCCTTTGTCATGATGTCAGC 59.866 52.381 0.00 0.00 0.00 4.26
2847 3264 2.439409 CCCTTTGTCATGATGTCAGCA 58.561 47.619 0.00 0.00 0.00 4.41
2848 3265 2.821378 CCCTTTGTCATGATGTCAGCAA 59.179 45.455 0.00 0.00 0.00 3.91
2849 3266 3.256383 CCCTTTGTCATGATGTCAGCAAA 59.744 43.478 0.00 2.75 0.00 3.68
2850 3267 4.081862 CCCTTTGTCATGATGTCAGCAAAT 60.082 41.667 0.00 0.00 31.14 2.32
2851 3268 5.475719 CCTTTGTCATGATGTCAGCAAATT 58.524 37.500 0.00 0.00 31.14 1.82
2852 3269 5.347635 CCTTTGTCATGATGTCAGCAAATTG 59.652 40.000 0.00 0.00 31.14 2.32
2853 3270 5.456548 TTGTCATGATGTCAGCAAATTGT 57.543 34.783 0.00 0.00 0.00 2.71
2854 3271 5.456548 TGTCATGATGTCAGCAAATTGTT 57.543 34.783 0.00 0.00 0.00 2.83
2855 3272 5.224135 TGTCATGATGTCAGCAAATTGTTG 58.776 37.500 3.32 3.32 37.83 3.33
2856 3273 5.009811 TGTCATGATGTCAGCAAATTGTTGA 59.990 36.000 8.44 8.44 35.22 3.18
2857 3274 5.571741 GTCATGATGTCAGCAAATTGTTGAG 59.428 40.000 12.70 1.02 38.26 3.02
2858 3275 5.474189 TCATGATGTCAGCAAATTGTTGAGA 59.526 36.000 12.70 12.11 38.26 3.27
2859 3276 5.112220 TGATGTCAGCAAATTGTTGAGAC 57.888 39.130 12.70 4.01 38.26 3.36
2860 3277 3.607422 TGTCAGCAAATTGTTGAGACG 57.393 42.857 12.70 0.00 38.26 4.18
2861 3278 2.942376 TGTCAGCAAATTGTTGAGACGT 59.058 40.909 12.70 0.00 38.26 4.34
2862 3279 4.123506 TGTCAGCAAATTGTTGAGACGTA 58.876 39.130 12.70 0.00 38.26 3.57
2863 3280 4.211164 TGTCAGCAAATTGTTGAGACGTAG 59.789 41.667 12.70 0.00 38.26 3.51
2864 3281 3.745975 TCAGCAAATTGTTGAGACGTAGG 59.254 43.478 8.44 0.00 32.63 3.18
2865 3282 3.074412 AGCAAATTGTTGAGACGTAGGG 58.926 45.455 0.00 0.00 36.83 3.53
2866 3283 3.071479 GCAAATTGTTGAGACGTAGGGA 58.929 45.455 0.00 0.00 36.83 4.20
2867 3284 3.120304 GCAAATTGTTGAGACGTAGGGAC 60.120 47.826 0.00 0.00 36.83 4.46
2868 3285 4.062293 CAAATTGTTGAGACGTAGGGACA 58.938 43.478 0.00 0.00 36.83 4.02
2869 3286 4.553330 AATTGTTGAGACGTAGGGACAT 57.447 40.909 0.00 0.00 0.00 3.06
2870 3287 3.313012 TTGTTGAGACGTAGGGACATG 57.687 47.619 0.00 0.00 0.00 3.21
2871 3288 1.067142 TGTTGAGACGTAGGGACATGC 60.067 52.381 0.00 0.00 0.00 4.06
2872 3289 1.067142 GTTGAGACGTAGGGACATGCA 60.067 52.381 0.00 0.00 0.00 3.96
2873 3290 0.817654 TGAGACGTAGGGACATGCAG 59.182 55.000 0.00 0.00 0.00 4.41
2874 3291 0.528684 GAGACGTAGGGACATGCAGC 60.529 60.000 0.00 0.00 0.00 5.25
2875 3292 1.218047 GACGTAGGGACATGCAGCA 59.782 57.895 0.00 0.00 0.00 4.41
2876 3293 1.079127 ACGTAGGGACATGCAGCAC 60.079 57.895 0.00 0.00 0.00 4.40
2877 3294 2.167219 CGTAGGGACATGCAGCACG 61.167 63.158 0.00 0.00 0.00 5.34
2878 3295 2.125147 TAGGGACATGCAGCACGC 60.125 61.111 0.00 0.00 42.89 5.34
2881 3298 2.813474 GGACATGCAGCACGCGTA 60.813 61.111 13.44 0.00 46.97 4.42
2882 3299 2.395690 GACATGCAGCACGCGTAC 59.604 61.111 13.44 6.32 46.97 3.67
2883 3300 2.356913 ACATGCAGCACGCGTACA 60.357 55.556 13.44 8.80 46.97 2.90
2884 3301 1.695893 GACATGCAGCACGCGTACAT 61.696 55.000 13.44 10.95 46.97 2.29
2885 3302 1.297085 CATGCAGCACGCGTACATG 60.297 57.895 13.44 18.88 46.97 3.21
2886 3303 1.447663 ATGCAGCACGCGTACATGA 60.448 52.632 13.44 0.00 46.97 3.07
2887 3304 1.695893 ATGCAGCACGCGTACATGAC 61.696 55.000 13.44 8.02 46.97 3.06
2888 3305 3.081133 CAGCACGCGTACATGACC 58.919 61.111 13.44 0.00 0.00 4.02
2889 3306 1.736282 CAGCACGCGTACATGACCA 60.736 57.895 13.44 0.00 0.00 4.02
2890 3307 1.005512 AGCACGCGTACATGACCAA 60.006 52.632 13.44 0.00 0.00 3.67
2891 3308 1.014044 AGCACGCGTACATGACCAAG 61.014 55.000 13.44 0.00 0.00 3.61
2892 3309 1.011968 GCACGCGTACATGACCAAGA 61.012 55.000 13.44 0.00 0.00 3.02
2893 3310 0.992072 CACGCGTACATGACCAAGAG 59.008 55.000 13.44 0.00 0.00 2.85
2894 3311 0.736325 ACGCGTACATGACCAAGAGC 60.736 55.000 11.67 0.00 0.00 4.09
2895 3312 0.458543 CGCGTACATGACCAAGAGCT 60.459 55.000 0.00 0.00 0.00 4.09
2896 3313 1.202256 CGCGTACATGACCAAGAGCTA 60.202 52.381 0.00 0.00 0.00 3.32
2897 3314 2.194271 GCGTACATGACCAAGAGCTAC 58.806 52.381 0.00 0.00 0.00 3.58
2898 3315 2.810650 CGTACATGACCAAGAGCTACC 58.189 52.381 0.00 0.00 0.00 3.18
2899 3316 2.427453 CGTACATGACCAAGAGCTACCT 59.573 50.000 0.00 0.00 0.00 3.08
2900 3317 3.735208 CGTACATGACCAAGAGCTACCTG 60.735 52.174 0.00 0.00 0.00 4.00
2901 3318 2.260822 ACATGACCAAGAGCTACCTGT 58.739 47.619 0.00 0.00 0.00 4.00
2902 3319 2.639839 ACATGACCAAGAGCTACCTGTT 59.360 45.455 0.00 0.00 0.00 3.16
2903 3320 3.265791 CATGACCAAGAGCTACCTGTTC 58.734 50.000 0.00 0.00 0.00 3.18
2904 3321 1.272490 TGACCAAGAGCTACCTGTTCG 59.728 52.381 0.00 0.00 0.00 3.95
2905 3322 0.037232 ACCAAGAGCTACCTGTTCGC 60.037 55.000 0.00 0.00 0.00 4.70
2906 3323 1.078759 CCAAGAGCTACCTGTTCGCG 61.079 60.000 0.00 0.00 0.00 5.87
2907 3324 0.109272 CAAGAGCTACCTGTTCGCGA 60.109 55.000 3.71 3.71 0.00 5.87
2908 3325 0.601558 AAGAGCTACCTGTTCGCGAA 59.398 50.000 19.38 19.38 0.00 4.70
2909 3326 0.109226 AGAGCTACCTGTTCGCGAAC 60.109 55.000 38.12 38.12 41.50 3.95
2922 3339 4.904116 GTTCGCGAACAAAATGGATATCA 58.096 39.130 39.21 4.41 40.84 2.15
2923 3340 5.328691 GTTCGCGAACAAAATGGATATCAA 58.671 37.500 39.21 3.99 40.84 2.57
2924 3341 5.749596 TCGCGAACAAAATGGATATCAAT 57.250 34.783 6.20 0.00 0.00 2.57
2925 3342 5.747565 TCGCGAACAAAATGGATATCAATC 58.252 37.500 6.20 0.00 0.00 2.67
2926 3343 5.527214 TCGCGAACAAAATGGATATCAATCT 59.473 36.000 6.20 0.00 32.29 2.40
2927 3344 5.848036 CGCGAACAAAATGGATATCAATCTC 59.152 40.000 0.00 0.00 32.29 2.75
2928 3345 6.511605 CGCGAACAAAATGGATATCAATCTCA 60.512 38.462 0.00 0.00 32.29 3.27
2929 3346 7.195646 GCGAACAAAATGGATATCAATCTCAA 58.804 34.615 4.83 0.00 32.29 3.02
2930 3347 7.864379 GCGAACAAAATGGATATCAATCTCAAT 59.136 33.333 4.83 0.00 32.29 2.57
2931 3348 9.177304 CGAACAAAATGGATATCAATCTCAATG 57.823 33.333 4.83 0.00 32.29 2.82
2933 3350 9.811995 AACAAAATGGATATCAATCTCAATGTG 57.188 29.630 4.83 0.00 32.29 3.21
2934 3351 7.924412 ACAAAATGGATATCAATCTCAATGTGC 59.076 33.333 4.83 0.00 32.29 4.57
2935 3352 7.834881 AAATGGATATCAATCTCAATGTGCT 57.165 32.000 4.83 0.00 32.29 4.40
2936 3353 7.834881 AATGGATATCAATCTCAATGTGCTT 57.165 32.000 4.83 0.00 32.29 3.91
2937 3354 6.628919 TGGATATCAATCTCAATGTGCTTG 57.371 37.500 4.83 0.00 36.09 4.01
2938 3355 5.533528 TGGATATCAATCTCAATGTGCTTGG 59.466 40.000 4.83 0.00 35.43 3.61
2939 3356 3.795623 ATCAATCTCAATGTGCTTGGC 57.204 42.857 0.12 0.00 35.43 4.52
2940 3357 1.469703 TCAATCTCAATGTGCTTGGCG 59.530 47.619 0.12 0.00 35.43 5.69
2941 3358 0.171903 AATCTCAATGTGCTTGGCGC 59.828 50.000 0.00 0.00 39.75 6.53
2942 3359 1.985447 ATCTCAATGTGCTTGGCGCG 61.985 55.000 0.00 0.00 42.51 6.86
2943 3360 2.969806 CTCAATGTGCTTGGCGCGT 61.970 57.895 8.43 0.00 42.51 6.01
2944 3361 2.502510 CAATGTGCTTGGCGCGTC 60.503 61.111 2.29 2.29 42.51 5.19
2945 3362 4.088762 AATGTGCTTGGCGCGTCG 62.089 61.111 6.09 0.00 42.51 5.12
2948 3365 4.505217 GTGCTTGGCGCGTCGATG 62.505 66.667 6.09 0.00 43.27 3.84
2949 3366 4.733371 TGCTTGGCGCGTCGATGA 62.733 61.111 9.31 0.00 43.27 2.92
2950 3367 3.264897 GCTTGGCGCGTCGATGAT 61.265 61.111 9.31 0.00 0.00 2.45
2951 3368 2.622629 CTTGGCGCGTCGATGATG 59.377 61.111 9.31 0.48 0.00 3.07
2952 3369 1.878069 CTTGGCGCGTCGATGATGA 60.878 57.895 9.31 0.00 0.00 2.92
2953 3370 1.420641 CTTGGCGCGTCGATGATGAA 61.421 55.000 9.31 0.00 0.00 2.57
2954 3371 1.692148 TTGGCGCGTCGATGATGAAC 61.692 55.000 9.31 0.00 0.00 3.18
2955 3372 2.621000 GCGCGTCGATGATGAACC 59.379 61.111 9.31 0.00 0.00 3.62
2956 3373 2.913478 CGCGTCGATGATGAACCG 59.087 61.111 9.31 0.00 0.00 4.44
2957 3374 2.576893 CGCGTCGATGATGAACCGG 61.577 63.158 9.31 0.00 0.00 5.28
2958 3375 2.237751 GCGTCGATGATGAACCGGG 61.238 63.158 9.31 0.00 0.00 5.73
2959 3376 1.141019 CGTCGATGATGAACCGGGT 59.859 57.895 6.32 0.00 0.00 5.28
2960 3377 0.459585 CGTCGATGATGAACCGGGTT 60.460 55.000 13.26 13.26 0.00 4.11
2961 3378 1.006832 GTCGATGATGAACCGGGTTG 58.993 55.000 18.88 0.60 0.00 3.77
2962 3379 0.107897 TCGATGATGAACCGGGTTGG 60.108 55.000 18.88 0.00 46.41 3.77
2963 3380 1.714899 CGATGATGAACCGGGTTGGC 61.715 60.000 18.88 4.25 43.94 4.52
2964 3381 0.679640 GATGATGAACCGGGTTGGCA 60.680 55.000 18.88 10.53 43.94 4.92
2965 3382 0.680921 ATGATGAACCGGGTTGGCAG 60.681 55.000 18.88 0.00 43.94 4.85
2966 3383 1.002624 GATGAACCGGGTTGGCAGA 60.003 57.895 18.88 0.00 43.94 4.26
2967 3384 1.002134 ATGAACCGGGTTGGCAGAG 60.002 57.895 18.88 0.00 43.94 3.35
2968 3385 1.488705 ATGAACCGGGTTGGCAGAGA 61.489 55.000 18.88 0.00 43.94 3.10
2969 3386 1.376037 GAACCGGGTTGGCAGAGAG 60.376 63.158 18.88 0.00 43.94 3.20
2970 3387 2.804828 GAACCGGGTTGGCAGAGAGG 62.805 65.000 18.88 0.00 43.94 3.69
2971 3388 3.322466 CCGGGTTGGCAGAGAGGT 61.322 66.667 0.00 0.00 0.00 3.85
2972 3389 1.987855 CCGGGTTGGCAGAGAGGTA 60.988 63.158 0.00 0.00 0.00 3.08
2973 3390 1.517832 CGGGTTGGCAGAGAGGTAG 59.482 63.158 0.00 0.00 0.00 3.18
2974 3391 0.970937 CGGGTTGGCAGAGAGGTAGA 60.971 60.000 0.00 0.00 0.00 2.59
2975 3392 0.537653 GGGTTGGCAGAGAGGTAGAC 59.462 60.000 0.00 0.00 0.00 2.59
2976 3393 0.537653 GGTTGGCAGAGAGGTAGACC 59.462 60.000 0.00 0.00 0.00 3.85
2977 3394 0.173708 GTTGGCAGAGAGGTAGACCG 59.826 60.000 0.00 0.00 42.08 4.79
2978 3395 1.605058 TTGGCAGAGAGGTAGACCGC 61.605 60.000 0.00 0.00 42.08 5.68
2979 3396 2.052690 GGCAGAGAGGTAGACCGCA 61.053 63.158 5.20 0.00 42.08 5.69
2980 3397 1.435515 GCAGAGAGGTAGACCGCAG 59.564 63.158 5.20 0.00 42.08 5.18
2981 3398 1.032657 GCAGAGAGGTAGACCGCAGA 61.033 60.000 5.20 0.00 42.08 4.26
2982 3399 1.464734 CAGAGAGGTAGACCGCAGAA 58.535 55.000 5.20 0.00 42.08 3.02
2983 3400 1.819288 CAGAGAGGTAGACCGCAGAAA 59.181 52.381 5.20 0.00 42.08 2.52
2984 3401 1.819903 AGAGAGGTAGACCGCAGAAAC 59.180 52.381 5.20 0.00 42.08 2.78
2985 3402 1.544691 GAGAGGTAGACCGCAGAAACA 59.455 52.381 5.20 0.00 42.08 2.83
2986 3403 2.166664 GAGAGGTAGACCGCAGAAACAT 59.833 50.000 5.20 0.00 42.08 2.71
2987 3404 2.567615 AGAGGTAGACCGCAGAAACATT 59.432 45.455 5.20 0.00 42.08 2.71
2988 3405 2.673368 GAGGTAGACCGCAGAAACATTG 59.327 50.000 0.00 0.00 42.08 2.82
2989 3406 2.038557 AGGTAGACCGCAGAAACATTGT 59.961 45.455 0.00 0.00 42.08 2.71
2990 3407 2.415512 GGTAGACCGCAGAAACATTGTC 59.584 50.000 0.00 0.00 0.00 3.18
2991 3408 2.254546 AGACCGCAGAAACATTGTCA 57.745 45.000 0.00 0.00 0.00 3.58
2992 3409 1.873591 AGACCGCAGAAACATTGTCAC 59.126 47.619 0.00 0.00 0.00 3.67
2993 3410 1.601903 GACCGCAGAAACATTGTCACA 59.398 47.619 0.00 0.00 0.00 3.58
2994 3411 1.603802 ACCGCAGAAACATTGTCACAG 59.396 47.619 0.00 0.00 0.00 3.66
2995 3412 1.603802 CCGCAGAAACATTGTCACAGT 59.396 47.619 0.00 0.00 0.00 3.55
2996 3413 2.805671 CCGCAGAAACATTGTCACAGTA 59.194 45.455 0.00 0.00 0.00 2.74
2997 3414 3.120546 CCGCAGAAACATTGTCACAGTAG 60.121 47.826 0.00 0.00 0.00 2.57
2998 3415 3.740832 CGCAGAAACATTGTCACAGTAGA 59.259 43.478 0.00 0.00 0.00 2.59
2999 3416 4.376413 CGCAGAAACATTGTCACAGTAGAC 60.376 45.833 0.00 0.00 38.99 2.59
3000 3417 4.511454 GCAGAAACATTGTCACAGTAGACA 59.489 41.667 0.00 0.00 46.12 3.41
3007 3424 3.297830 TGTCACAGTAGACAATCGTGG 57.702 47.619 0.00 0.00 44.92 4.94
3008 3425 1.993370 GTCACAGTAGACAATCGTGGC 59.007 52.381 0.00 0.00 38.40 5.01
3009 3426 1.067142 TCACAGTAGACAATCGTGGCC 60.067 52.381 0.00 0.00 30.22 5.36
3010 3427 1.066858 CACAGTAGACAATCGTGGCCT 60.067 52.381 3.32 0.00 30.22 5.19
3011 3428 1.623811 ACAGTAGACAATCGTGGCCTT 59.376 47.619 3.32 0.00 30.22 4.35
3012 3429 2.002586 CAGTAGACAATCGTGGCCTTG 58.997 52.381 3.32 1.98 30.22 3.61
3013 3430 1.623811 AGTAGACAATCGTGGCCTTGT 59.376 47.619 7.76 7.76 38.26 3.16
3015 3432 2.927004 GACAATCGTGGCCTTGTCA 58.073 52.632 23.67 0.00 46.67 3.58
3016 3433 1.234821 GACAATCGTGGCCTTGTCAA 58.765 50.000 23.67 0.00 46.67 3.18
3017 3434 0.951558 ACAATCGTGGCCTTGTCAAC 59.048 50.000 3.32 0.00 29.85 3.18
3018 3435 0.240945 CAATCGTGGCCTTGTCAACC 59.759 55.000 3.32 0.00 0.00 3.77
3019 3436 1.234615 AATCGTGGCCTTGTCAACCG 61.235 55.000 3.32 0.00 0.00 4.44
3020 3437 3.353836 CGTGGCCTTGTCAACCGG 61.354 66.667 3.32 0.00 0.00 5.28
3021 3438 2.112297 GTGGCCTTGTCAACCGGA 59.888 61.111 9.46 0.00 0.00 5.14
3022 3439 1.966451 GTGGCCTTGTCAACCGGAG 60.966 63.158 9.46 0.00 0.00 4.63
3023 3440 2.144078 TGGCCTTGTCAACCGGAGA 61.144 57.895 9.46 2.03 0.00 3.71
3024 3441 1.671379 GGCCTTGTCAACCGGAGAC 60.671 63.158 20.04 20.04 36.55 3.36
3025 3442 1.070786 GCCTTGTCAACCGGAGACA 59.929 57.895 23.84 23.84 43.72 3.41
3030 3447 0.033504 TGTCAACCGGAGACAAGAGC 59.966 55.000 24.89 5.29 42.57 4.09
3031 3448 0.318762 GTCAACCGGAGACAAGAGCT 59.681 55.000 21.32 0.00 36.06 4.09
3032 3449 0.603569 TCAACCGGAGACAAGAGCTC 59.396 55.000 9.46 5.27 0.00 4.09
3033 3450 0.318441 CAACCGGAGACAAGAGCTCA 59.682 55.000 17.77 0.00 34.07 4.26
3034 3451 1.066573 CAACCGGAGACAAGAGCTCAT 60.067 52.381 17.77 0.00 34.07 2.90
3035 3452 0.534412 ACCGGAGACAAGAGCTCATG 59.466 55.000 17.77 17.40 34.07 3.07
3036 3453 0.809241 CCGGAGACAAGAGCTCATGC 60.809 60.000 18.49 11.30 40.05 4.06
3037 3454 0.108472 CGGAGACAAGAGCTCATGCA 60.108 55.000 18.49 0.00 42.74 3.96
3038 3455 1.654317 GGAGACAAGAGCTCATGCAG 58.346 55.000 18.49 4.30 42.74 4.41
3039 3456 1.206610 GGAGACAAGAGCTCATGCAGA 59.793 52.381 18.49 0.00 42.74 4.26
3040 3457 2.354503 GGAGACAAGAGCTCATGCAGAA 60.355 50.000 18.49 0.00 42.74 3.02
3041 3458 2.931325 GAGACAAGAGCTCATGCAGAAG 59.069 50.000 18.49 0.00 42.74 2.85
3042 3459 1.397692 GACAAGAGCTCATGCAGAAGC 59.602 52.381 18.49 13.75 42.74 3.86
3043 3460 1.003349 ACAAGAGCTCATGCAGAAGCT 59.997 47.619 21.83 21.83 42.74 3.74
3044 3461 1.398739 CAAGAGCTCATGCAGAAGCTG 59.601 52.381 25.45 11.87 42.74 4.24
3045 3462 0.903236 AGAGCTCATGCAGAAGCTGA 59.097 50.000 25.45 8.41 42.74 4.26
3046 3463 1.008329 GAGCTCATGCAGAAGCTGAC 58.992 55.000 25.45 11.76 42.74 3.51
3047 3464 0.740164 AGCTCATGCAGAAGCTGACG 60.740 55.000 21.22 3.00 42.74 4.35
3048 3465 0.738762 GCTCATGCAGAAGCTGACGA 60.739 55.000 14.20 0.00 42.74 4.20
3049 3466 1.718396 CTCATGCAGAAGCTGACGAA 58.282 50.000 0.00 0.00 42.74 3.85
3050 3467 1.659601 CTCATGCAGAAGCTGACGAAG 59.340 52.381 0.00 0.00 42.74 3.79
3060 3477 2.533318 CTGACGAAGCCAGGAACAC 58.467 57.895 0.00 0.00 0.00 3.32
3061 3478 0.034059 CTGACGAAGCCAGGAACACT 59.966 55.000 0.00 0.00 0.00 3.55
3062 3479 0.033504 TGACGAAGCCAGGAACACTC 59.966 55.000 0.00 0.00 0.00 3.51
3063 3480 1.006102 ACGAAGCCAGGAACACTCG 60.006 57.895 0.00 0.00 0.00 4.18
3064 3481 1.738099 CGAAGCCAGGAACACTCGG 60.738 63.158 0.00 0.00 0.00 4.63
3065 3482 2.032681 AAGCCAGGAACACTCGGC 59.967 61.111 0.00 0.00 41.09 5.54
3066 3483 3.883744 AAGCCAGGAACACTCGGCG 62.884 63.158 0.00 0.00 43.66 6.46
3067 3484 4.373116 GCCAGGAACACTCGGCGA 62.373 66.667 10.14 10.14 34.99 5.54
3068 3485 2.432628 CCAGGAACACTCGGCGAC 60.433 66.667 4.99 0.00 0.00 5.19
3080 3497 4.364409 GGCGACGACGTTGGCAAC 62.364 66.667 30.70 20.27 41.41 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.410673 TCAAAGTATCTTAGTGGGAGCTATAG 57.589 38.462 0.00 0.00 0.00 1.31
119 124 9.586435 CAGTAAAAACTTGAAAGATTTTCAGGT 57.414 29.630 12.55 11.91 40.20 4.00
149 155 9.617975 GGTGAAAAATCAACAAGAGATAAAGAG 57.382 33.333 0.00 0.00 0.00 2.85
151 157 9.748708 TTGGTGAAAAATCAACAAGAGATAAAG 57.251 29.630 5.25 0.00 41.77 1.85
171 177 6.667414 AGCCCTTAATTTTCACATATTGGTGA 59.333 34.615 0.00 0.00 45.54 4.02
172 178 6.877236 AGCCCTTAATTTTCACATATTGGTG 58.123 36.000 0.00 0.00 40.16 4.17
173 179 7.201785 CGTAGCCCTTAATTTTCACATATTGGT 60.202 37.037 0.00 0.00 0.00 3.67
174 180 7.138736 CGTAGCCCTTAATTTTCACATATTGG 58.861 38.462 0.00 0.00 0.00 3.16
195 209 6.937436 ATTACCTAAGATTTTTGGGCGTAG 57.063 37.500 1.75 0.00 34.04 3.51
196 210 6.319405 GGAATTACCTAAGATTTTTGGGCGTA 59.681 38.462 1.75 0.00 34.04 4.42
197 211 5.126545 GGAATTACCTAAGATTTTTGGGCGT 59.873 40.000 1.75 0.00 34.04 5.68
198 212 5.126384 TGGAATTACCTAAGATTTTTGGGCG 59.874 40.000 1.75 0.00 39.86 6.13
199 213 6.338146 GTGGAATTACCTAAGATTTTTGGGC 58.662 40.000 1.75 0.00 39.86 5.36
200 214 6.152154 ACGTGGAATTACCTAAGATTTTTGGG 59.848 38.462 1.75 0.00 39.86 4.12
220 236 1.654105 GCTAATCAGACAACGACGTGG 59.346 52.381 0.00 0.00 0.00 4.94
232 248 0.830648 TTCGGGTCAGGGCTAATCAG 59.169 55.000 0.00 0.00 0.00 2.90
362 380 6.407525 CCTCATACCCAAGGAAAACAACAAAA 60.408 38.462 0.00 0.00 34.35 2.44
417 435 5.070981 ACTTGGGTGATGATATCAATCGAGT 59.929 40.000 9.99 9.57 41.69 4.18
420 438 7.728847 TTAACTTGGGTGATGATATCAATCG 57.271 36.000 9.99 0.00 41.69 3.34
453 478 6.313164 TGTCTTATATCTAGACCTATGTCGCG 59.687 42.308 0.00 0.00 46.51 5.87
512 537 7.722363 AGGAATTGACAACGAAATAAACCTTT 58.278 30.769 0.00 0.00 0.00 3.11
521 546 6.590292 GTGATAGAGAGGAATTGACAACGAAA 59.410 38.462 0.00 0.00 0.00 3.46
565 590 6.499106 AACAAAAGGGAAATTCCAAGTCAT 57.501 33.333 14.68 0.00 38.64 3.06
566 591 5.948742 AACAAAAGGGAAATTCCAAGTCA 57.051 34.783 14.68 0.00 38.64 3.41
568 593 6.306643 TGAAACAAAAGGGAAATTCCAAGT 57.693 33.333 14.68 1.67 38.64 3.16
569 594 7.047271 TCTTGAAACAAAAGGGAAATTCCAAG 58.953 34.615 14.68 4.90 38.64 3.61
570 595 6.951971 TCTTGAAACAAAAGGGAAATTCCAA 58.048 32.000 14.68 0.00 38.64 3.53
571 596 6.552445 TCTTGAAACAAAAGGGAAATTCCA 57.448 33.333 14.68 0.00 38.64 3.53
572 597 7.012327 CCTTTCTTGAAACAAAAGGGAAATTCC 59.988 37.037 2.79 2.79 43.44 3.01
573 598 7.919690 CCTTTCTTGAAACAAAAGGGAAATTC 58.080 34.615 5.41 0.00 43.44 2.17
582 607 4.928615 CAGCACACCTTTCTTGAAACAAAA 59.071 37.500 0.00 0.00 0.00 2.44
587 612 2.098614 TGCAGCACACCTTTCTTGAAA 58.901 42.857 0.00 0.00 0.00 2.69
667 717 3.875727 CTGTCTACGCTACTACTAGGCAA 59.124 47.826 0.00 0.00 0.00 4.52
668 718 3.464907 CTGTCTACGCTACTACTAGGCA 58.535 50.000 0.00 0.00 0.00 4.75
669 719 2.807392 CCTGTCTACGCTACTACTAGGC 59.193 54.545 0.00 0.00 0.00 3.93
670 720 3.808726 CACCTGTCTACGCTACTACTAGG 59.191 52.174 0.00 0.00 0.00 3.02
676 742 0.526662 GCACACCTGTCTACGCTACT 59.473 55.000 0.00 0.00 0.00 2.57
762 1102 1.452833 GAGATGGCTGCTGGTTCCC 60.453 63.158 0.00 0.00 0.00 3.97
763 1103 0.463474 GAGAGATGGCTGCTGGTTCC 60.463 60.000 0.00 0.00 0.00 3.62
764 1104 0.540923 AGAGAGATGGCTGCTGGTTC 59.459 55.000 0.00 0.00 0.00 3.62
766 1106 0.325484 AGAGAGAGATGGCTGCTGGT 60.325 55.000 0.00 0.00 0.00 4.00
768 1108 1.338973 GAGAGAGAGAGATGGCTGCTG 59.661 57.143 0.00 0.00 0.00 4.41
769 1109 1.696063 GAGAGAGAGAGATGGCTGCT 58.304 55.000 0.00 0.00 0.00 4.24
770 1110 0.311790 CGAGAGAGAGAGATGGCTGC 59.688 60.000 0.00 0.00 0.00 5.25
773 1113 3.211045 AGTAACGAGAGAGAGAGATGGC 58.789 50.000 0.00 0.00 0.00 4.40
775 1115 7.535139 AGAAAAAGTAACGAGAGAGAGAGATG 58.465 38.462 0.00 0.00 0.00 2.90
776 1116 7.696992 AGAAAAAGTAACGAGAGAGAGAGAT 57.303 36.000 0.00 0.00 0.00 2.75
899 1274 2.614734 CGTCCATCCATCATCCATCCAG 60.615 54.545 0.00 0.00 0.00 3.86
914 1289 1.748403 CATCCATCCGACCGTCCAT 59.252 57.895 0.00 0.00 0.00 3.41
915 1290 2.431454 CCATCCATCCGACCGTCCA 61.431 63.158 0.00 0.00 0.00 4.02
916 1291 1.472662 ATCCATCCATCCGACCGTCC 61.473 60.000 0.00 0.00 0.00 4.79
917 1292 0.319900 CATCCATCCATCCGACCGTC 60.320 60.000 0.00 0.00 0.00 4.79
918 1293 1.748403 CATCCATCCATCCGACCGT 59.252 57.895 0.00 0.00 0.00 4.83
919 1294 1.669115 GCATCCATCCATCCGACCG 60.669 63.158 0.00 0.00 0.00 4.79
920 1295 0.604780 CTGCATCCATCCATCCGACC 60.605 60.000 0.00 0.00 0.00 4.79
921 1296 0.394192 TCTGCATCCATCCATCCGAC 59.606 55.000 0.00 0.00 0.00 4.79
922 1297 0.683412 CTCTGCATCCATCCATCCGA 59.317 55.000 0.00 0.00 0.00 4.55
923 1298 0.395686 ACTCTGCATCCATCCATCCG 59.604 55.000 0.00 0.00 0.00 4.18
924 1299 1.893544 CACTCTGCATCCATCCATCC 58.106 55.000 0.00 0.00 0.00 3.51
925 1300 1.236628 GCACTCTGCATCCATCCATC 58.763 55.000 0.00 0.00 44.26 3.51
926 1301 3.416253 GCACTCTGCATCCATCCAT 57.584 52.632 0.00 0.00 44.26 3.41
994 1369 2.433604 TCTCCTTCATCTCCATCTGCAC 59.566 50.000 0.00 0.00 0.00 4.57
995 1370 2.699321 CTCTCCTTCATCTCCATCTGCA 59.301 50.000 0.00 0.00 0.00 4.41
996 1371 2.964464 TCTCTCCTTCATCTCCATCTGC 59.036 50.000 0.00 0.00 0.00 4.26
1386 1761 1.139947 GAGCAGCCACTCGTACCTC 59.860 63.158 0.00 0.00 0.00 3.85
2094 2478 4.404654 GCAAGAAAGCGGCCGGTG 62.405 66.667 33.14 19.09 0.00 4.94
2095 2479 4.947147 TGCAAGAAAGCGGCCGGT 62.947 61.111 26.97 26.97 37.31 5.28
2301 2689 2.032178 GCTAAGGAACGATGATTGGCAC 59.968 50.000 0.00 0.00 0.00 5.01
2386 2775 6.645700 TTTTCACAGAAGTTGCATTTTGAC 57.354 33.333 0.00 0.00 0.00 3.18
2403 2792 6.456988 GGTCACATCGTATGGATCTTTTTCAC 60.457 42.308 0.00 0.00 31.28 3.18
2434 2823 7.201530 GCACTACTTTTTCATAGCTTACGATGT 60.202 37.037 0.00 0.00 31.45 3.06
2438 2827 6.403333 TGCACTACTTTTTCATAGCTTACG 57.597 37.500 0.00 0.00 0.00 3.18
2499 2915 5.337009 CCAAATTTCTCTTAGCAATGCACCT 60.337 40.000 8.35 0.00 0.00 4.00
2605 3022 4.021807 TCGTGAGTTGCATAACCTTCTACA 60.022 41.667 0.00 0.00 37.52 2.74
2606 3023 4.491676 TCGTGAGTTGCATAACCTTCTAC 58.508 43.478 0.00 0.00 37.52 2.59
2607 3024 4.794278 TCGTGAGTTGCATAACCTTCTA 57.206 40.909 0.00 0.00 37.52 2.10
2608 3025 3.678056 TCGTGAGTTGCATAACCTTCT 57.322 42.857 0.00 0.00 37.52 2.85
2609 3026 7.891183 ATATATCGTGAGTTGCATAACCTTC 57.109 36.000 0.00 0.00 37.52 3.46
2610 3027 7.931407 TCAATATATCGTGAGTTGCATAACCTT 59.069 33.333 0.00 0.00 37.52 3.50
2611 3028 7.441836 TCAATATATCGTGAGTTGCATAACCT 58.558 34.615 0.00 0.00 37.52 3.50
2612 3029 7.652300 TCAATATATCGTGAGTTGCATAACC 57.348 36.000 0.00 0.00 37.52 2.85
2613 3030 8.104530 CGATCAATATATCGTGAGTTGCATAAC 58.895 37.037 0.00 0.00 42.93 1.89
2614 3031 7.275560 CCGATCAATATATCGTGAGTTGCATAA 59.724 37.037 7.03 0.00 45.72 1.90
2615 3032 6.751888 CCGATCAATATATCGTGAGTTGCATA 59.248 38.462 7.03 0.00 45.72 3.14
2616 3033 5.578336 CCGATCAATATATCGTGAGTTGCAT 59.422 40.000 7.03 0.00 45.72 3.96
2617 3034 4.923281 CCGATCAATATATCGTGAGTTGCA 59.077 41.667 7.03 0.00 45.72 4.08
2618 3035 4.327357 CCCGATCAATATATCGTGAGTTGC 59.673 45.833 7.03 0.00 45.72 4.17
2619 3036 5.346011 CACCCGATCAATATATCGTGAGTTG 59.654 44.000 7.03 0.00 45.72 3.16
2620 3037 5.470368 CACCCGATCAATATATCGTGAGTT 58.530 41.667 7.03 0.00 45.72 3.01
2621 3038 4.618460 GCACCCGATCAATATATCGTGAGT 60.618 45.833 7.03 0.38 45.72 3.41
2622 3039 3.859961 GCACCCGATCAATATATCGTGAG 59.140 47.826 7.03 0.00 45.72 3.51
2623 3040 3.257127 TGCACCCGATCAATATATCGTGA 59.743 43.478 7.03 0.00 45.72 4.35
2624 3041 3.584834 TGCACCCGATCAATATATCGTG 58.415 45.455 7.03 0.00 45.72 4.35
2625 3042 3.953712 TGCACCCGATCAATATATCGT 57.046 42.857 7.03 0.00 45.72 3.73
2626 3043 6.564686 GCATATTGCACCCGATCAATATATCG 60.565 42.308 7.03 1.57 44.38 2.92
2627 3044 6.662616 GCATATTGCACCCGATCAATATATC 58.337 40.000 7.03 1.23 44.26 1.63
2628 3045 6.624352 GCATATTGCACCCGATCAATATAT 57.376 37.500 7.03 0.00 44.26 0.86
2630 3047 4.970662 GCATATTGCACCCGATCAATAT 57.029 40.909 0.00 0.00 44.26 1.28
2648 3065 8.591072 ACCCTTTGTACTTATATATACGTGCAT 58.409 33.333 16.97 3.81 30.07 3.96
2649 3066 7.954835 ACCCTTTGTACTTATATATACGTGCA 58.045 34.615 13.70 13.70 0.00 4.57
2650 3067 9.565213 CTACCCTTTGTACTTATATATACGTGC 57.435 37.037 11.18 10.35 0.00 5.34
2651 3068 9.565213 GCTACCCTTTGTACTTATATATACGTG 57.435 37.037 11.18 0.06 0.00 4.49
2652 3069 8.743714 GGCTACCCTTTGTACTTATATATACGT 58.256 37.037 7.04 7.04 0.00 3.57
2653 3070 8.742777 TGGCTACCCTTTGTACTTATATATACG 58.257 37.037 0.00 0.00 0.00 3.06
2654 3071 9.866798 GTGGCTACCCTTTGTACTTATATATAC 57.133 37.037 0.00 0.00 0.00 1.47
2655 3072 8.742777 CGTGGCTACCCTTTGTACTTATATATA 58.257 37.037 0.00 0.00 0.00 0.86
2656 3073 7.234166 ACGTGGCTACCCTTTGTACTTATATAT 59.766 37.037 0.00 0.00 0.00 0.86
2657 3074 6.550854 ACGTGGCTACCCTTTGTACTTATATA 59.449 38.462 0.00 0.00 0.00 0.86
2658 3075 5.364735 ACGTGGCTACCCTTTGTACTTATAT 59.635 40.000 0.00 0.00 0.00 0.86
2659 3076 4.711355 ACGTGGCTACCCTTTGTACTTATA 59.289 41.667 0.00 0.00 0.00 0.98
2660 3077 3.516700 ACGTGGCTACCCTTTGTACTTAT 59.483 43.478 0.00 0.00 0.00 1.73
2661 3078 2.899256 ACGTGGCTACCCTTTGTACTTA 59.101 45.455 0.00 0.00 0.00 2.24
2662 3079 1.695788 ACGTGGCTACCCTTTGTACTT 59.304 47.619 0.00 0.00 0.00 2.24
2663 3080 1.274447 GACGTGGCTACCCTTTGTACT 59.726 52.381 0.00 0.00 0.00 2.73
2664 3081 1.673923 GGACGTGGCTACCCTTTGTAC 60.674 57.143 0.00 0.00 0.00 2.90
2665 3082 0.609662 GGACGTGGCTACCCTTTGTA 59.390 55.000 0.00 0.00 0.00 2.41
2666 3083 1.125711 AGGACGTGGCTACCCTTTGT 61.126 55.000 0.00 0.00 0.00 2.83
2667 3084 0.391263 GAGGACGTGGCTACCCTTTG 60.391 60.000 0.00 0.00 0.00 2.77
2668 3085 0.834687 TGAGGACGTGGCTACCCTTT 60.835 55.000 0.00 0.00 0.00 3.11
2669 3086 0.834687 TTGAGGACGTGGCTACCCTT 60.835 55.000 0.00 0.00 0.00 3.95
2670 3087 1.229082 TTGAGGACGTGGCTACCCT 60.229 57.895 0.00 0.00 0.00 4.34
2671 3088 1.079336 GTTGAGGACGTGGCTACCC 60.079 63.158 0.00 0.00 0.00 3.69
2672 3089 1.180029 TAGTTGAGGACGTGGCTACC 58.820 55.000 0.00 0.00 0.00 3.18
2673 3090 3.379372 TGTATAGTTGAGGACGTGGCTAC 59.621 47.826 0.00 0.00 0.00 3.58
2674 3091 3.623703 TGTATAGTTGAGGACGTGGCTA 58.376 45.455 0.00 0.00 0.00 3.93
2675 3092 2.453521 TGTATAGTTGAGGACGTGGCT 58.546 47.619 0.00 0.00 0.00 4.75
2676 3093 2.953466 TGTATAGTTGAGGACGTGGC 57.047 50.000 0.00 0.00 0.00 5.01
2677 3094 3.383505 TCCATGTATAGTTGAGGACGTGG 59.616 47.826 0.00 5.88 46.20 4.94
2678 3095 4.649088 TCCATGTATAGTTGAGGACGTG 57.351 45.455 0.00 0.00 0.00 4.49
2679 3096 4.099573 CCTTCCATGTATAGTTGAGGACGT 59.900 45.833 0.00 0.00 0.00 4.34
2680 3097 4.341235 TCCTTCCATGTATAGTTGAGGACG 59.659 45.833 0.00 0.00 0.00 4.79
2681 3098 5.221541 CCTCCTTCCATGTATAGTTGAGGAC 60.222 48.000 0.00 0.00 39.33 3.85
2682 3099 4.901849 CCTCCTTCCATGTATAGTTGAGGA 59.098 45.833 0.00 0.00 39.33 3.71
2683 3100 4.901849 TCCTCCTTCCATGTATAGTTGAGG 59.098 45.833 0.00 0.00 38.53 3.86
2684 3101 5.011533 CCTCCTCCTTCCATGTATAGTTGAG 59.988 48.000 0.00 0.00 0.00 3.02
2685 3102 4.901849 CCTCCTCCTTCCATGTATAGTTGA 59.098 45.833 0.00 0.00 0.00 3.18
2686 3103 4.040952 CCCTCCTCCTTCCATGTATAGTTG 59.959 50.000 0.00 0.00 0.00 3.16
2687 3104 4.235372 CCCTCCTCCTTCCATGTATAGTT 58.765 47.826 0.00 0.00 0.00 2.24
2688 3105 3.863086 CCCTCCTCCTTCCATGTATAGT 58.137 50.000 0.00 0.00 0.00 2.12
2689 3106 2.569404 GCCCTCCTCCTTCCATGTATAG 59.431 54.545 0.00 0.00 0.00 1.31
2690 3107 2.182312 AGCCCTCCTCCTTCCATGTATA 59.818 50.000 0.00 0.00 0.00 1.47
2691 3108 1.061033 AGCCCTCCTCCTTCCATGTAT 60.061 52.381 0.00 0.00 0.00 2.29
2692 3109 0.343372 AGCCCTCCTCCTTCCATGTA 59.657 55.000 0.00 0.00 0.00 2.29
2693 3110 0.551131 AAGCCCTCCTCCTTCCATGT 60.551 55.000 0.00 0.00 0.00 3.21
2694 3111 0.106819 CAAGCCCTCCTCCTTCCATG 60.107 60.000 0.00 0.00 0.00 3.66
2695 3112 0.551131 ACAAGCCCTCCTCCTTCCAT 60.551 55.000 0.00 0.00 0.00 3.41
2696 3113 0.772124 AACAAGCCCTCCTCCTTCCA 60.772 55.000 0.00 0.00 0.00 3.53
2697 3114 0.322906 CAACAAGCCCTCCTCCTTCC 60.323 60.000 0.00 0.00 0.00 3.46
2698 3115 0.402121 ACAACAAGCCCTCCTCCTTC 59.598 55.000 0.00 0.00 0.00 3.46
2699 3116 1.351350 GTACAACAAGCCCTCCTCCTT 59.649 52.381 0.00 0.00 0.00 3.36
2700 3117 0.984995 GTACAACAAGCCCTCCTCCT 59.015 55.000 0.00 0.00 0.00 3.69
2701 3118 0.690762 TGTACAACAAGCCCTCCTCC 59.309 55.000 0.00 0.00 0.00 4.30
2702 3119 2.561478 TTGTACAACAAGCCCTCCTC 57.439 50.000 3.59 0.00 32.34 3.71
2727 3144 8.144478 GGTGTTGAGATGTAGATACATATGTGT 58.856 37.037 18.81 12.06 46.20 3.72
2728 3145 7.600375 GGGTGTTGAGATGTAGATACATATGTG 59.400 40.741 18.81 0.00 46.20 3.21
2729 3146 7.256332 GGGGTGTTGAGATGTAGATACATATGT 60.256 40.741 13.93 13.93 46.20 2.29
2730 3147 7.099764 GGGGTGTTGAGATGTAGATACATATG 58.900 42.308 4.92 0.00 46.20 1.78
2731 3148 6.213600 GGGGGTGTTGAGATGTAGATACATAT 59.786 42.308 5.49 2.70 46.20 1.78
2732 3149 5.542635 GGGGGTGTTGAGATGTAGATACATA 59.457 44.000 5.49 0.00 46.20 2.29
2734 3151 3.709653 GGGGGTGTTGAGATGTAGATACA 59.290 47.826 0.00 0.00 40.98 2.29
2735 3152 4.338379 GGGGGTGTTGAGATGTAGATAC 57.662 50.000 0.00 0.00 0.00 2.24
2759 3176 2.434884 ATGGTGCCGCTTCGACTG 60.435 61.111 0.00 0.00 0.00 3.51
2760 3177 2.434884 CATGGTGCCGCTTCGACT 60.435 61.111 0.00 0.00 0.00 4.18
2761 3178 3.499737 CCATGGTGCCGCTTCGAC 61.500 66.667 2.57 0.00 0.00 4.20
2762 3179 3.950794 GACCATGGTGCCGCTTCGA 62.951 63.158 25.52 0.00 0.00 3.71
2763 3180 3.499737 GACCATGGTGCCGCTTCG 61.500 66.667 25.52 0.00 0.00 3.79
2764 3181 3.499737 CGACCATGGTGCCGCTTC 61.500 66.667 25.52 4.57 0.00 3.86
2765 3182 4.015406 TCGACCATGGTGCCGCTT 62.015 61.111 25.52 0.00 0.00 4.68
2766 3183 4.760047 GTCGACCATGGTGCCGCT 62.760 66.667 25.52 0.00 0.00 5.52
2770 3187 2.513065 CTTTGCGTCGACCATGGTGC 62.513 60.000 25.52 19.93 0.00 5.01
2771 3188 0.948623 TCTTTGCGTCGACCATGGTG 60.949 55.000 25.52 14.83 0.00 4.17
2772 3189 0.949105 GTCTTTGCGTCGACCATGGT 60.949 55.000 19.89 19.89 0.00 3.55
2773 3190 0.670546 AGTCTTTGCGTCGACCATGG 60.671 55.000 11.19 11.19 0.00 3.66
2774 3191 0.439985 CAGTCTTTGCGTCGACCATG 59.560 55.000 10.58 0.00 0.00 3.66
2775 3192 0.670546 CCAGTCTTTGCGTCGACCAT 60.671 55.000 10.58 0.00 0.00 3.55
2776 3193 1.300620 CCAGTCTTTGCGTCGACCA 60.301 57.895 10.58 6.30 0.00 4.02
2777 3194 0.389948 ATCCAGTCTTTGCGTCGACC 60.390 55.000 10.58 3.43 0.00 4.79
2778 3195 0.992802 GATCCAGTCTTTGCGTCGAC 59.007 55.000 5.18 5.18 0.00 4.20
2779 3196 0.456142 CGATCCAGTCTTTGCGTCGA 60.456 55.000 0.00 0.00 35.49 4.20
2780 3197 1.413767 CCGATCCAGTCTTTGCGTCG 61.414 60.000 0.00 0.00 34.18 5.12
2781 3198 0.108804 TCCGATCCAGTCTTTGCGTC 60.109 55.000 0.00 0.00 0.00 5.19
2782 3199 0.320374 TTCCGATCCAGTCTTTGCGT 59.680 50.000 0.00 0.00 0.00 5.24
2783 3200 0.721718 GTTCCGATCCAGTCTTTGCG 59.278 55.000 0.00 0.00 0.00 4.85
2784 3201 2.003301 GAGTTCCGATCCAGTCTTTGC 58.997 52.381 0.00 0.00 0.00 3.68
2785 3202 2.234908 AGGAGTTCCGATCCAGTCTTTG 59.765 50.000 0.00 0.00 42.08 2.77
2786 3203 2.498078 GAGGAGTTCCGATCCAGTCTTT 59.502 50.000 0.00 0.00 42.08 2.52
2787 3204 2.104170 GAGGAGTTCCGATCCAGTCTT 58.896 52.381 0.00 0.00 42.08 3.01
2788 3205 1.770294 GAGGAGTTCCGATCCAGTCT 58.230 55.000 0.00 0.00 42.08 3.24
2789 3206 0.382515 CGAGGAGTTCCGATCCAGTC 59.617 60.000 0.00 0.00 42.08 3.51
2790 3207 0.034380 TCGAGGAGTTCCGATCCAGT 60.034 55.000 0.00 0.00 42.08 4.00
2791 3208 1.103803 TTCGAGGAGTTCCGATCCAG 58.896 55.000 0.00 0.00 42.08 3.86
2792 3209 1.476891 CTTTCGAGGAGTTCCGATCCA 59.523 52.381 0.00 0.00 42.08 3.41
2793 3210 1.749634 TCTTTCGAGGAGTTCCGATCC 59.250 52.381 0.00 0.00 42.08 3.36
2794 3211 2.791849 CGTCTTTCGAGGAGTTCCGATC 60.792 54.545 0.00 0.00 42.86 3.69
2795 3212 1.132643 CGTCTTTCGAGGAGTTCCGAT 59.867 52.381 0.00 0.00 42.86 4.18
2796 3213 0.520404 CGTCTTTCGAGGAGTTCCGA 59.480 55.000 0.00 0.00 42.86 4.55
2797 3214 1.071567 GCGTCTTTCGAGGAGTTCCG 61.072 60.000 0.00 0.00 42.86 4.30
2798 3215 1.071567 CGCGTCTTTCGAGGAGTTCC 61.072 60.000 0.00 0.00 42.86 3.62
2799 3216 2.350833 CGCGTCTTTCGAGGAGTTC 58.649 57.895 0.00 0.00 42.86 3.01
2800 3217 4.554163 CGCGTCTTTCGAGGAGTT 57.446 55.556 0.00 0.00 42.86 3.01
2805 3222 0.167470 TGTCTACCGCGTCTTTCGAG 59.833 55.000 4.92 0.00 42.86 4.04
2806 3223 0.592637 TTGTCTACCGCGTCTTTCGA 59.407 50.000 4.92 0.00 42.86 3.71
2807 3224 0.982673 CTTGTCTACCGCGTCTTTCG 59.017 55.000 4.92 0.00 43.12 3.46
2808 3225 0.714439 GCTTGTCTACCGCGTCTTTC 59.286 55.000 4.92 0.00 0.00 2.62
2809 3226 0.669625 GGCTTGTCTACCGCGTCTTT 60.670 55.000 4.92 0.00 0.00 2.52
2810 3227 1.080025 GGCTTGTCTACCGCGTCTT 60.080 57.895 4.92 0.00 0.00 3.01
2811 3228 2.572284 GGCTTGTCTACCGCGTCT 59.428 61.111 4.92 0.00 0.00 4.18
2812 3229 2.502692 AAGGGCTTGTCTACCGCGTC 62.503 60.000 4.92 0.00 0.00 5.19
2813 3230 2.108278 AAAGGGCTTGTCTACCGCGT 62.108 55.000 4.92 0.00 0.00 6.01
2814 3231 1.375523 AAAGGGCTTGTCTACCGCG 60.376 57.895 0.00 0.00 0.00 6.46
2815 3232 0.605589 ACAAAGGGCTTGTCTACCGC 60.606 55.000 0.00 0.00 45.50 5.68
2816 3233 3.625745 ACAAAGGGCTTGTCTACCG 57.374 52.632 0.00 0.00 45.50 4.02
2823 3240 2.821378 TGACATCATGACAAAGGGCTTG 59.179 45.455 0.00 0.00 41.19 4.01
2824 3241 3.087031 CTGACATCATGACAAAGGGCTT 58.913 45.455 0.00 0.00 0.00 4.35
2825 3242 2.719739 CTGACATCATGACAAAGGGCT 58.280 47.619 0.00 0.00 0.00 5.19
2826 3243 1.133790 GCTGACATCATGACAAAGGGC 59.866 52.381 0.00 0.00 0.00 5.19
2827 3244 2.439409 TGCTGACATCATGACAAAGGG 58.561 47.619 0.00 0.00 0.00 3.95
2828 3245 4.508461 TTTGCTGACATCATGACAAAGG 57.492 40.909 0.00 0.00 0.00 3.11
2829 3246 5.924254 ACAATTTGCTGACATCATGACAAAG 59.076 36.000 0.00 0.00 31.41 2.77
2830 3247 5.845103 ACAATTTGCTGACATCATGACAAA 58.155 33.333 0.00 3.34 31.98 2.83
2831 3248 5.456548 ACAATTTGCTGACATCATGACAA 57.543 34.783 0.00 0.00 0.00 3.18
2832 3249 5.009811 TCAACAATTTGCTGACATCATGACA 59.990 36.000 0.00 0.00 32.17 3.58
2833 3250 5.463286 TCAACAATTTGCTGACATCATGAC 58.537 37.500 0.00 0.00 32.17 3.06
2834 3251 5.474189 TCTCAACAATTTGCTGACATCATGA 59.526 36.000 0.00 0.00 32.17 3.07
2835 3252 5.571741 GTCTCAACAATTTGCTGACATCATG 59.428 40.000 0.00 0.00 36.63 3.07
2836 3253 5.618418 CGTCTCAACAATTTGCTGACATCAT 60.618 40.000 0.00 0.00 36.53 2.45
2837 3254 4.319694 CGTCTCAACAATTTGCTGACATCA 60.320 41.667 0.00 0.00 36.53 3.07
2838 3255 4.153986 CGTCTCAACAATTTGCTGACATC 58.846 43.478 0.00 0.00 36.53 3.06
2839 3256 3.565482 ACGTCTCAACAATTTGCTGACAT 59.435 39.130 0.00 0.00 36.53 3.06
2840 3257 2.942376 ACGTCTCAACAATTTGCTGACA 59.058 40.909 0.00 0.00 36.53 3.58
2841 3258 3.609103 ACGTCTCAACAATTTGCTGAC 57.391 42.857 0.00 1.31 34.94 3.51
2842 3259 3.745975 CCTACGTCTCAACAATTTGCTGA 59.254 43.478 0.00 2.73 32.17 4.26
2843 3260 3.120199 CCCTACGTCTCAACAATTTGCTG 60.120 47.826 0.00 0.00 32.17 4.41
2844 3261 3.074412 CCCTACGTCTCAACAATTTGCT 58.926 45.455 0.00 0.00 32.17 3.91
2845 3262 3.071479 TCCCTACGTCTCAACAATTTGC 58.929 45.455 0.00 0.00 32.17 3.68
2846 3263 4.062293 TGTCCCTACGTCTCAACAATTTG 58.938 43.478 0.00 0.00 0.00 2.32
2847 3264 4.345859 TGTCCCTACGTCTCAACAATTT 57.654 40.909 0.00 0.00 0.00 1.82
2848 3265 4.253685 CATGTCCCTACGTCTCAACAATT 58.746 43.478 0.00 0.00 0.00 2.32
2849 3266 3.861840 CATGTCCCTACGTCTCAACAAT 58.138 45.455 0.00 0.00 0.00 2.71
2850 3267 2.611971 GCATGTCCCTACGTCTCAACAA 60.612 50.000 0.00 0.00 0.00 2.83
2851 3268 1.067142 GCATGTCCCTACGTCTCAACA 60.067 52.381 0.00 0.00 0.00 3.33
2852 3269 1.067142 TGCATGTCCCTACGTCTCAAC 60.067 52.381 0.00 0.00 0.00 3.18
2853 3270 1.204704 CTGCATGTCCCTACGTCTCAA 59.795 52.381 0.00 0.00 0.00 3.02
2854 3271 0.817654 CTGCATGTCCCTACGTCTCA 59.182 55.000 0.00 0.00 0.00 3.27
2855 3272 0.528684 GCTGCATGTCCCTACGTCTC 60.529 60.000 0.00 0.00 0.00 3.36
2856 3273 1.257750 TGCTGCATGTCCCTACGTCT 61.258 55.000 0.00 0.00 0.00 4.18
2857 3274 1.084370 GTGCTGCATGTCCCTACGTC 61.084 60.000 5.27 0.00 0.00 4.34
2858 3275 1.079127 GTGCTGCATGTCCCTACGT 60.079 57.895 5.27 0.00 0.00 3.57
2859 3276 2.167219 CGTGCTGCATGTCCCTACG 61.167 63.158 13.62 2.21 0.00 3.51
2860 3277 2.464459 GCGTGCTGCATGTCCCTAC 61.464 63.158 21.76 1.75 45.45 3.18
2861 3278 2.125147 GCGTGCTGCATGTCCCTA 60.125 61.111 21.76 0.00 45.45 3.53
2864 3281 2.813474 TACGCGTGCTGCATGTCC 60.813 61.111 24.59 6.57 46.97 4.02
2865 3282 1.695893 ATGTACGCGTGCTGCATGTC 61.696 55.000 27.18 13.43 46.97 3.06
2866 3283 1.741401 ATGTACGCGTGCTGCATGT 60.741 52.632 27.18 15.18 46.97 3.21
2867 3284 1.297085 CATGTACGCGTGCTGCATG 60.297 57.895 27.18 24.58 46.97 4.06
2868 3285 1.447663 TCATGTACGCGTGCTGCAT 60.448 52.632 27.18 18.81 46.97 3.96
2869 3286 2.048690 TCATGTACGCGTGCTGCA 60.049 55.556 27.18 17.49 46.97 4.41
2870 3287 2.395690 GTCATGTACGCGTGCTGC 59.604 61.111 27.18 12.60 41.47 5.25
2871 3288 1.288419 TTGGTCATGTACGCGTGCTG 61.288 55.000 27.18 21.02 0.00 4.41
2872 3289 1.005512 TTGGTCATGTACGCGTGCT 60.006 52.632 27.18 10.85 0.00 4.40
2873 3290 1.011968 TCTTGGTCATGTACGCGTGC 61.012 55.000 24.59 22.71 0.00 5.34
2874 3291 0.992072 CTCTTGGTCATGTACGCGTG 59.008 55.000 24.59 4.79 0.00 5.34
2875 3292 0.736325 GCTCTTGGTCATGTACGCGT 60.736 55.000 19.17 19.17 0.00 6.01
2876 3293 0.458543 AGCTCTTGGTCATGTACGCG 60.459 55.000 3.53 3.53 0.00 6.01
2877 3294 2.194271 GTAGCTCTTGGTCATGTACGC 58.806 52.381 0.00 0.00 0.00 4.42
2878 3295 2.427453 AGGTAGCTCTTGGTCATGTACG 59.573 50.000 0.00 0.00 0.00 3.67
2879 3296 3.195825 ACAGGTAGCTCTTGGTCATGTAC 59.804 47.826 0.00 0.00 0.00 2.90
2880 3297 3.441101 ACAGGTAGCTCTTGGTCATGTA 58.559 45.455 0.00 0.00 0.00 2.29
2881 3298 2.260822 ACAGGTAGCTCTTGGTCATGT 58.739 47.619 0.00 0.00 0.00 3.21
2882 3299 3.265791 GAACAGGTAGCTCTTGGTCATG 58.734 50.000 0.00 0.00 39.28 3.07
2883 3300 2.093973 CGAACAGGTAGCTCTTGGTCAT 60.094 50.000 11.74 0.00 39.41 3.06
2884 3301 1.272490 CGAACAGGTAGCTCTTGGTCA 59.728 52.381 11.74 0.00 39.41 4.02
2885 3302 1.997669 CGAACAGGTAGCTCTTGGTC 58.002 55.000 0.00 0.00 36.65 4.02
2886 3303 0.037232 GCGAACAGGTAGCTCTTGGT 60.037 55.000 0.00 0.00 0.00 3.67
2887 3304 1.078759 CGCGAACAGGTAGCTCTTGG 61.079 60.000 0.00 0.00 0.00 3.61
2888 3305 0.109272 TCGCGAACAGGTAGCTCTTG 60.109 55.000 6.20 0.00 0.00 3.02
2889 3306 0.601558 TTCGCGAACAGGTAGCTCTT 59.398 50.000 19.38 0.00 0.00 2.85
2890 3307 0.109226 GTTCGCGAACAGGTAGCTCT 60.109 55.000 39.21 0.00 40.84 4.09
2891 3308 0.388134 TGTTCGCGAACAGGTAGCTC 60.388 55.000 42.01 19.82 45.42 4.09
2892 3309 1.663739 TGTTCGCGAACAGGTAGCT 59.336 52.632 42.01 0.00 45.42 3.32
2893 3310 4.255126 TGTTCGCGAACAGGTAGC 57.745 55.556 42.01 21.21 45.42 3.58
2900 3317 4.904116 TGATATCCATTTTGTTCGCGAAC 58.096 39.130 38.12 38.12 41.50 3.95
2901 3318 5.553290 TTGATATCCATTTTGTTCGCGAA 57.447 34.783 19.38 19.38 0.00 4.70
2902 3319 5.527214 AGATTGATATCCATTTTGTTCGCGA 59.473 36.000 3.71 3.71 0.00 5.87
2903 3320 5.751680 AGATTGATATCCATTTTGTTCGCG 58.248 37.500 0.00 0.00 0.00 5.87
2904 3321 6.728200 TGAGATTGATATCCATTTTGTTCGC 58.272 36.000 0.00 0.00 0.00 4.70
2905 3322 9.177304 CATTGAGATTGATATCCATTTTGTTCG 57.823 33.333 0.00 0.00 0.00 3.95
2907 3324 9.811995 CACATTGAGATTGATATCCATTTTGTT 57.188 29.630 0.00 0.00 0.00 2.83
2908 3325 7.924412 GCACATTGAGATTGATATCCATTTTGT 59.076 33.333 0.00 0.00 0.00 2.83
2909 3326 8.141909 AGCACATTGAGATTGATATCCATTTTG 58.858 33.333 0.00 0.00 0.00 2.44
2910 3327 8.246430 AGCACATTGAGATTGATATCCATTTT 57.754 30.769 0.00 0.00 0.00 1.82
2911 3328 7.834881 AGCACATTGAGATTGATATCCATTT 57.165 32.000 0.00 0.00 0.00 2.32
2912 3329 7.255836 CCAAGCACATTGAGATTGATATCCATT 60.256 37.037 12.69 0.00 41.83 3.16
2913 3330 6.208797 CCAAGCACATTGAGATTGATATCCAT 59.791 38.462 12.69 0.00 41.83 3.41
2914 3331 5.533528 CCAAGCACATTGAGATTGATATCCA 59.466 40.000 12.69 0.00 41.83 3.41
2915 3332 5.564259 GCCAAGCACATTGAGATTGATATCC 60.564 44.000 12.69 0.00 41.83 2.59
2916 3333 5.458891 GCCAAGCACATTGAGATTGATATC 58.541 41.667 12.69 0.00 41.83 1.63
2917 3334 4.023450 CGCCAAGCACATTGAGATTGATAT 60.023 41.667 12.69 0.00 41.83 1.63
2918 3335 3.313249 CGCCAAGCACATTGAGATTGATA 59.687 43.478 12.69 0.00 41.83 2.15
2919 3336 2.098607 CGCCAAGCACATTGAGATTGAT 59.901 45.455 12.69 0.00 41.83 2.57
2920 3337 1.469703 CGCCAAGCACATTGAGATTGA 59.530 47.619 12.69 0.00 41.83 2.57
2921 3338 1.904144 CGCCAAGCACATTGAGATTG 58.096 50.000 5.27 5.27 41.83 2.67
2933 3350 3.264897 ATCATCGACGCGCCAAGC 61.265 61.111 5.73 0.00 43.95 4.01
2934 3351 1.420641 TTCATCATCGACGCGCCAAG 61.421 55.000 5.73 0.00 0.00 3.61
2935 3352 1.446966 TTCATCATCGACGCGCCAA 60.447 52.632 5.73 0.00 0.00 4.52
2936 3353 2.164663 GTTCATCATCGACGCGCCA 61.165 57.895 5.73 0.00 0.00 5.69
2937 3354 2.621000 GTTCATCATCGACGCGCC 59.379 61.111 5.73 0.00 0.00 6.53
2938 3355 2.621000 GGTTCATCATCGACGCGC 59.379 61.111 5.73 0.00 0.00 6.86
2939 3356 2.576893 CCGGTTCATCATCGACGCG 61.577 63.158 3.53 3.53 0.00 6.01
2940 3357 2.237751 CCCGGTTCATCATCGACGC 61.238 63.158 0.00 0.00 0.00 5.19
2941 3358 0.459585 AACCCGGTTCATCATCGACG 60.460 55.000 0.00 0.00 0.00 5.12
2942 3359 1.006832 CAACCCGGTTCATCATCGAC 58.993 55.000 0.00 0.00 0.00 4.20
2943 3360 0.107897 CCAACCCGGTTCATCATCGA 60.108 55.000 0.00 0.00 0.00 3.59
2944 3361 1.714899 GCCAACCCGGTTCATCATCG 61.715 60.000 0.00 0.00 36.97 3.84
2945 3362 0.679640 TGCCAACCCGGTTCATCATC 60.680 55.000 0.00 0.00 36.97 2.92
2946 3363 0.680921 CTGCCAACCCGGTTCATCAT 60.681 55.000 0.00 0.00 36.97 2.45
2947 3364 1.303236 CTGCCAACCCGGTTCATCA 60.303 57.895 0.00 0.00 36.97 3.07
2948 3365 1.002624 TCTGCCAACCCGGTTCATC 60.003 57.895 0.00 0.00 36.97 2.92
2949 3366 1.002134 CTCTGCCAACCCGGTTCAT 60.002 57.895 0.00 0.00 36.97 2.57
2950 3367 2.111999 CTCTCTGCCAACCCGGTTCA 62.112 60.000 0.00 0.00 36.97 3.18
2951 3368 1.376037 CTCTCTGCCAACCCGGTTC 60.376 63.158 0.00 0.00 36.97 3.62
2952 3369 2.750350 CTCTCTGCCAACCCGGTT 59.250 61.111 0.00 0.00 36.97 4.44
2953 3370 2.741878 TACCTCTCTGCCAACCCGGT 62.742 60.000 0.00 0.00 36.97 5.28
2954 3371 1.961180 CTACCTCTCTGCCAACCCGG 61.961 65.000 0.00 0.00 38.11 5.73
2955 3372 0.970937 TCTACCTCTCTGCCAACCCG 60.971 60.000 0.00 0.00 0.00 5.28
2956 3373 0.537653 GTCTACCTCTCTGCCAACCC 59.462 60.000 0.00 0.00 0.00 4.11
2957 3374 0.537653 GGTCTACCTCTCTGCCAACC 59.462 60.000 0.00 0.00 0.00 3.77
2958 3375 0.173708 CGGTCTACCTCTCTGCCAAC 59.826 60.000 0.00 0.00 0.00 3.77
2959 3376 1.605058 GCGGTCTACCTCTCTGCCAA 61.605 60.000 0.00 0.00 0.00 4.52
2960 3377 2.052690 GCGGTCTACCTCTCTGCCA 61.053 63.158 0.00 0.00 0.00 4.92
2961 3378 2.010582 CTGCGGTCTACCTCTCTGCC 62.011 65.000 0.00 0.00 33.14 4.85
2962 3379 1.032657 TCTGCGGTCTACCTCTCTGC 61.033 60.000 0.00 0.00 0.00 4.26
2963 3380 1.464734 TTCTGCGGTCTACCTCTCTG 58.535 55.000 0.00 0.00 0.00 3.35
2964 3381 1.819903 GTTTCTGCGGTCTACCTCTCT 59.180 52.381 0.00 0.00 0.00 3.10
2965 3382 1.544691 TGTTTCTGCGGTCTACCTCTC 59.455 52.381 0.00 0.00 0.00 3.20
2966 3383 1.629043 TGTTTCTGCGGTCTACCTCT 58.371 50.000 0.00 0.00 0.00 3.69
2967 3384 2.673368 CAATGTTTCTGCGGTCTACCTC 59.327 50.000 0.00 0.00 0.00 3.85
2968 3385 2.038557 ACAATGTTTCTGCGGTCTACCT 59.961 45.455 0.00 0.00 0.00 3.08
2969 3386 2.415512 GACAATGTTTCTGCGGTCTACC 59.584 50.000 0.00 0.00 0.00 3.18
2970 3387 3.064207 TGACAATGTTTCTGCGGTCTAC 58.936 45.455 0.00 0.00 0.00 2.59
2971 3388 3.064207 GTGACAATGTTTCTGCGGTCTA 58.936 45.455 0.00 0.00 0.00 2.59
2972 3389 1.873591 GTGACAATGTTTCTGCGGTCT 59.126 47.619 0.00 0.00 0.00 3.85
2973 3390 1.601903 TGTGACAATGTTTCTGCGGTC 59.398 47.619 0.00 0.00 0.00 4.79
2974 3391 1.603802 CTGTGACAATGTTTCTGCGGT 59.396 47.619 0.00 0.00 0.00 5.68
2975 3392 1.603802 ACTGTGACAATGTTTCTGCGG 59.396 47.619 0.00 0.00 0.00 5.69
2976 3393 3.740832 TCTACTGTGACAATGTTTCTGCG 59.259 43.478 0.00 0.00 0.00 5.18
2977 3394 4.511454 TGTCTACTGTGACAATGTTTCTGC 59.489 41.667 9.56 0.00 43.08 4.26
2987 3404 2.609491 GCCACGATTGTCTACTGTGACA 60.609 50.000 8.37 8.37 44.17 3.58
2988 3405 1.993370 GCCACGATTGTCTACTGTGAC 59.007 52.381 0.00 0.00 37.47 3.67
2989 3406 1.067142 GGCCACGATTGTCTACTGTGA 60.067 52.381 0.00 0.00 32.39 3.58
2990 3407 1.066858 AGGCCACGATTGTCTACTGTG 60.067 52.381 5.01 0.00 0.00 3.66
2991 3408 1.267121 AGGCCACGATTGTCTACTGT 58.733 50.000 5.01 0.00 0.00 3.55
2992 3409 2.002586 CAAGGCCACGATTGTCTACTG 58.997 52.381 5.01 0.00 0.00 2.74
2993 3410 1.623811 ACAAGGCCACGATTGTCTACT 59.376 47.619 5.01 0.00 34.62 2.57
2994 3411 2.094762 ACAAGGCCACGATTGTCTAC 57.905 50.000 5.01 0.00 34.62 2.59
2998 3415 0.951558 GTTGACAAGGCCACGATTGT 59.048 50.000 5.01 6.67 42.17 2.71
2999 3416 0.240945 GGTTGACAAGGCCACGATTG 59.759 55.000 5.01 2.64 0.00 2.67
3000 3417 1.234615 CGGTTGACAAGGCCACGATT 61.235 55.000 5.01 0.00 0.00 3.34
3001 3418 1.671054 CGGTTGACAAGGCCACGAT 60.671 57.895 5.01 0.00 0.00 3.73
3002 3419 2.280524 CGGTTGACAAGGCCACGA 60.281 61.111 5.01 0.00 0.00 4.35
3003 3420 3.353836 CCGGTTGACAAGGCCACG 61.354 66.667 5.01 0.00 0.00 4.94
3004 3421 1.966451 CTCCGGTTGACAAGGCCAC 60.966 63.158 5.01 0.00 0.00 5.01
3005 3422 2.144078 TCTCCGGTTGACAAGGCCA 61.144 57.895 5.01 0.00 0.00 5.36
3006 3423 1.671379 GTCTCCGGTTGACAAGGCC 60.671 63.158 19.87 0.00 34.80 5.19
3007 3424 0.534203 TTGTCTCCGGTTGACAAGGC 60.534 55.000 28.32 11.39 45.77 4.35
3008 3425 3.698250 TTGTCTCCGGTTGACAAGG 57.302 52.632 28.32 0.00 45.77 3.61
3011 3428 0.033504 GCTCTTGTCTCCGGTTGACA 59.966 55.000 22.32 22.32 41.94 3.58
3012 3429 0.318762 AGCTCTTGTCTCCGGTTGAC 59.681 55.000 18.61 18.61 35.21 3.18
3013 3430 0.603569 GAGCTCTTGTCTCCGGTTGA 59.396 55.000 6.43 0.00 0.00 3.18
3014 3431 0.318441 TGAGCTCTTGTCTCCGGTTG 59.682 55.000 16.19 0.00 0.00 3.77
3015 3432 1.066573 CATGAGCTCTTGTCTCCGGTT 60.067 52.381 18.96 0.00 0.00 4.44
3016 3433 0.534412 CATGAGCTCTTGTCTCCGGT 59.466 55.000 18.96 0.00 0.00 5.28
3017 3434 0.809241 GCATGAGCTCTTGTCTCCGG 60.809 60.000 25.45 0.00 37.91 5.14
3018 3435 0.108472 TGCATGAGCTCTTGTCTCCG 60.108 55.000 25.45 5.03 42.74 4.63
3019 3436 1.206610 TCTGCATGAGCTCTTGTCTCC 59.793 52.381 25.45 12.82 42.74 3.71
3020 3437 2.669300 TCTGCATGAGCTCTTGTCTC 57.331 50.000 25.45 13.11 42.74 3.36
3021 3438 2.936114 GCTTCTGCATGAGCTCTTGTCT 60.936 50.000 25.45 0.35 42.74 3.41
3022 3439 1.397692 GCTTCTGCATGAGCTCTTGTC 59.602 52.381 25.45 19.02 42.74 3.18
3023 3440 1.003349 AGCTTCTGCATGAGCTCTTGT 59.997 47.619 25.45 6.29 42.74 3.16
3024 3441 1.398739 CAGCTTCTGCATGAGCTCTTG 59.601 52.381 22.03 22.03 42.74 3.02
3025 3442 1.278413 TCAGCTTCTGCATGAGCTCTT 59.722 47.619 18.08 5.66 42.74 2.85
3026 3443 0.903236 TCAGCTTCTGCATGAGCTCT 59.097 50.000 18.08 0.00 42.74 4.09
3027 3444 1.008329 GTCAGCTTCTGCATGAGCTC 58.992 55.000 18.08 6.82 42.74 4.09
3028 3445 0.740164 CGTCAGCTTCTGCATGAGCT 60.740 55.000 15.89 15.89 42.74 4.09
3029 3446 0.738762 TCGTCAGCTTCTGCATGAGC 60.739 55.000 12.21 12.21 42.74 4.26
3030 3447 1.659601 CTTCGTCAGCTTCTGCATGAG 59.340 52.381 0.00 0.00 42.74 2.90
3031 3448 1.718396 CTTCGTCAGCTTCTGCATGA 58.282 50.000 0.00 0.00 42.74 3.07
3032 3449 0.096628 GCTTCGTCAGCTTCTGCATG 59.903 55.000 0.00 0.00 46.27 4.06
3033 3450 2.464682 GCTTCGTCAGCTTCTGCAT 58.535 52.632 0.00 0.00 46.27 3.96
3034 3451 3.957260 GCTTCGTCAGCTTCTGCA 58.043 55.556 2.55 0.00 46.27 4.41
3042 3459 0.034059 AGTGTTCCTGGCTTCGTCAG 59.966 55.000 0.00 0.00 34.71 3.51
3043 3460 0.033504 GAGTGTTCCTGGCTTCGTCA 59.966 55.000 0.00 0.00 0.00 4.35
3044 3461 1.009389 CGAGTGTTCCTGGCTTCGTC 61.009 60.000 0.00 0.00 0.00 4.20
3045 3462 1.006102 CGAGTGTTCCTGGCTTCGT 60.006 57.895 0.00 0.00 0.00 3.85
3046 3463 1.738099 CCGAGTGTTCCTGGCTTCG 60.738 63.158 0.00 0.00 0.00 3.79
3047 3464 2.035442 GCCGAGTGTTCCTGGCTTC 61.035 63.158 0.00 0.00 44.16 3.86
3048 3465 2.032681 GCCGAGTGTTCCTGGCTT 59.967 61.111 0.00 0.00 44.16 4.35
3049 3466 4.379243 CGCCGAGTGTTCCTGGCT 62.379 66.667 0.21 0.00 45.36 4.75
3050 3467 4.373116 TCGCCGAGTGTTCCTGGC 62.373 66.667 0.00 0.00 44.09 4.85
3051 3468 2.432628 GTCGCCGAGTGTTCCTGG 60.433 66.667 0.00 0.00 0.00 4.45
3052 3469 2.805353 CGTCGCCGAGTGTTCCTG 60.805 66.667 0.00 0.00 35.63 3.86
3053 3470 2.981909 TCGTCGCCGAGTGTTCCT 60.982 61.111 0.00 0.00 38.40 3.36
3054 3471 2.804090 GTCGTCGCCGAGTGTTCC 60.804 66.667 0.00 0.00 45.26 3.62
3055 3472 3.164011 CGTCGTCGCCGAGTGTTC 61.164 66.667 0.00 0.00 45.26 3.18
3056 3473 3.474230 AACGTCGTCGCCGAGTGTT 62.474 57.895 1.35 0.00 45.26 3.32
3057 3474 3.957535 AACGTCGTCGCCGAGTGT 61.958 61.111 1.35 0.00 45.26 3.55
3058 3475 3.458579 CAACGTCGTCGCCGAGTG 61.459 66.667 1.35 0.00 45.26 3.51
3059 3476 4.695231 CCAACGTCGTCGCCGAGT 62.695 66.667 1.35 0.00 45.26 4.18
3063 3480 4.364409 GTTGCCAACGTCGTCGCC 62.364 66.667 13.13 0.00 41.18 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.