Multiple sequence alignment - TraesCS5D01G093000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G093000 chr5D 100.000 2195 0 0 1 2195 101707811 101705617 0.000000e+00 4054.0
1 TraesCS5D01G093000 chr5D 96.023 176 6 1 9 184 101748170 101747996 3.570000e-73 285.0
2 TraesCS5D01G093000 chr5B 91.040 904 43 10 702 1583 110123848 110122961 0.000000e+00 1186.0
3 TraesCS5D01G093000 chr5B 95.089 448 16 5 1752 2195 110120087 110119642 0.000000e+00 701.0
4 TraesCS5D01G093000 chr5B 93.750 112 1 2 1650 1760 110122856 110122750 1.740000e-36 163.0
5 TraesCS5D01G093000 chr5B 94.915 59 2 1 1599 1656 110122977 110122919 8.350000e-15 91.6
6 TraesCS5D01G093000 chr5A 92.494 413 23 5 1789 2195 98444254 98444664 3.140000e-163 584.0
7 TraesCS5D01G093000 chr5A 85.686 503 25 22 874 1360 98435548 98436019 9.110000e-134 486.0
8 TraesCS5D01G093000 chr5A 94.706 170 5 2 715 880 98435349 98435518 6.010000e-66 261.0
9 TraesCS5D01G093000 chr5A 80.826 339 57 7 374 705 480536057 480535720 2.160000e-65 259.0
10 TraesCS5D01G093000 chr5A 81.024 332 58 5 375 701 708832837 708833168 2.160000e-65 259.0
11 TraesCS5D01G093000 chr5A 87.931 174 14 3 1363 1530 98436083 98436255 4.780000e-47 198.0
12 TraesCS5D01G093000 chr5A 100.000 34 0 0 1656 1689 98436442 98436475 1.820000e-06 63.9
13 TraesCS5D01G093000 chr6B 80.974 431 65 11 287 701 34445807 34445378 2.100000e-85 326.0
14 TraesCS5D01G093000 chr2B 80.000 435 63 14 287 702 626993162 626993591 1.270000e-77 300.0
15 TraesCS5D01G093000 chr7D 79.770 435 67 13 287 705 19573871 19574300 1.650000e-76 296.0
16 TraesCS5D01G093000 chr7D 78.300 447 80 14 279 710 616016745 616016301 2.780000e-69 272.0
17 TraesCS5D01G093000 chr1B 82.596 339 49 7 373 701 38211788 38212126 7.670000e-75 291.0
18 TraesCS5D01G093000 chr1A 79.535 430 71 11 287 700 583949871 583950299 7.670000e-75 291.0
19 TraesCS5D01G093000 chr6A 82.493 337 51 7 373 701 124492838 124492502 2.760000e-74 289.0
20 TraesCS5D01G093000 chr6D 81.548 336 55 6 373 701 286637235 286636900 9.990000e-69 270.0
21 TraesCS5D01G093000 chr4A 77.979 386 79 5 322 702 624045194 624044810 1.010000e-58 237.0
22 TraesCS5D01G093000 chr4D 77.410 332 57 11 374 699 308598716 308598397 4.810000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G093000 chr5D 101705617 101707811 2194 True 4054.000 4054 100.00000 1 2195 1 chr5D.!!$R1 2194
1 TraesCS5D01G093000 chr5B 110119642 110123848 4206 True 535.400 1186 93.69850 702 2195 4 chr5B.!!$R1 1493
2 TraesCS5D01G093000 chr5A 98435349 98436475 1126 False 252.225 486 92.08075 715 1689 4 chr5A.!!$F3 974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.032017 AGGGAGGTCGCTGGTTCTAT 60.032 55.0 0.0 0.0 37.77 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1301 1367 0.098905 GATACGAGACGCAGCTGTCA 59.901 55.0 16.64 0.0 41.41 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.857957 AAAAAGGTAAAAGTTGAATGTTACGAA 57.142 25.926 0.00 0.00 0.00 3.85
36 37 9.673454 AAAGGTAAAAGTTGAATGTTACGAATC 57.327 29.630 0.00 0.00 0.00 2.52
37 38 7.813645 AGGTAAAAGTTGAATGTTACGAATCC 58.186 34.615 0.00 0.00 0.00 3.01
38 39 7.664318 AGGTAAAAGTTGAATGTTACGAATCCT 59.336 33.333 0.00 0.00 0.00 3.24
39 40 7.749126 GGTAAAAGTTGAATGTTACGAATCCTG 59.251 37.037 0.00 0.00 0.00 3.86
40 41 4.946784 AGTTGAATGTTACGAATCCTGC 57.053 40.909 0.00 0.00 0.00 4.85
41 42 4.579869 AGTTGAATGTTACGAATCCTGCT 58.420 39.130 0.00 0.00 0.00 4.24
42 43 5.730550 AGTTGAATGTTACGAATCCTGCTA 58.269 37.500 0.00 0.00 0.00 3.49
43 44 5.812642 AGTTGAATGTTACGAATCCTGCTAG 59.187 40.000 0.00 0.00 0.00 3.42
44 45 4.693283 TGAATGTTACGAATCCTGCTAGG 58.307 43.478 0.00 0.00 36.46 3.02
45 46 4.161565 TGAATGTTACGAATCCTGCTAGGT 59.838 41.667 0.00 0.00 36.53 3.08
46 47 3.520290 TGTTACGAATCCTGCTAGGTG 57.480 47.619 0.00 0.00 36.53 4.00
47 48 2.167693 TGTTACGAATCCTGCTAGGTGG 59.832 50.000 0.00 0.00 36.53 4.61
48 49 0.750850 TACGAATCCTGCTAGGTGGC 59.249 55.000 0.00 0.00 36.53 5.01
49 50 1.592669 CGAATCCTGCTAGGTGGCG 60.593 63.158 0.00 0.00 36.53 5.69
50 51 1.227674 GAATCCTGCTAGGTGGCGG 60.228 63.158 0.00 0.00 36.53 6.13
54 55 4.473520 CTGCTAGGTGGCGGGGTG 62.474 72.222 0.00 0.00 35.17 4.61
57 58 3.327404 CTAGGTGGCGGGGTGGTT 61.327 66.667 0.00 0.00 0.00 3.67
58 59 1.991167 CTAGGTGGCGGGGTGGTTA 60.991 63.158 0.00 0.00 0.00 2.85
59 60 2.248086 CTAGGTGGCGGGGTGGTTAC 62.248 65.000 0.00 0.00 0.00 2.50
60 61 3.956314 GGTGGCGGGGTGGTTACA 61.956 66.667 0.00 0.00 0.00 2.41
61 62 2.670592 GTGGCGGGGTGGTTACAC 60.671 66.667 0.00 0.00 46.97 2.90
62 63 2.850130 TGGCGGGGTGGTTACACT 60.850 61.111 0.00 0.00 46.85 3.55
63 64 1.535930 TGGCGGGGTGGTTACACTA 60.536 57.895 0.00 0.00 46.85 2.74
64 65 1.078918 GGCGGGGTGGTTACACTAC 60.079 63.158 0.00 0.00 46.85 2.73
70 71 2.654749 GGTGGTTACACTACCGTACC 57.345 55.000 0.00 0.00 46.85 3.34
71 72 1.204704 GGTGGTTACACTACCGTACCC 59.795 57.143 0.00 0.00 46.85 3.69
72 73 1.204704 GTGGTTACACTACCGTACCCC 59.795 57.143 0.00 0.00 44.29 4.95
73 74 0.455815 GGTTACACTACCGTACCCCG 59.544 60.000 0.00 0.00 0.00 5.73
74 75 1.459450 GTTACACTACCGTACCCCGA 58.541 55.000 0.00 0.00 39.56 5.14
75 76 2.024414 GTTACACTACCGTACCCCGAT 58.976 52.381 0.00 0.00 39.56 4.18
76 77 3.211045 GTTACACTACCGTACCCCGATA 58.789 50.000 0.00 0.00 39.56 2.92
77 78 2.435372 ACACTACCGTACCCCGATAA 57.565 50.000 0.00 0.00 39.56 1.75
78 79 2.301346 ACACTACCGTACCCCGATAAG 58.699 52.381 0.00 0.00 39.56 1.73
79 80 1.610522 CACTACCGTACCCCGATAAGG 59.389 57.143 0.00 0.00 39.56 2.69
88 89 3.857764 CCGATAAGGGAGGTCGCT 58.142 61.111 0.00 0.00 41.18 4.93
89 90 1.364171 CCGATAAGGGAGGTCGCTG 59.636 63.158 0.00 0.00 39.23 5.18
90 91 1.364171 CGATAAGGGAGGTCGCTGG 59.636 63.158 0.00 0.00 39.23 4.85
91 92 1.392710 CGATAAGGGAGGTCGCTGGT 61.393 60.000 0.00 0.00 39.23 4.00
92 93 0.831307 GATAAGGGAGGTCGCTGGTT 59.169 55.000 0.00 0.00 39.23 3.67
93 94 0.831307 ATAAGGGAGGTCGCTGGTTC 59.169 55.000 0.00 0.00 39.23 3.62
94 95 0.252103 TAAGGGAGGTCGCTGGTTCT 60.252 55.000 0.00 0.00 39.23 3.01
95 96 0.252103 AAGGGAGGTCGCTGGTTCTA 60.252 55.000 0.00 0.00 39.23 2.10
96 97 0.032017 AGGGAGGTCGCTGGTTCTAT 60.032 55.000 0.00 0.00 37.77 1.98
97 98 0.831307 GGGAGGTCGCTGGTTCTATT 59.169 55.000 0.00 0.00 0.00 1.73
98 99 1.202545 GGGAGGTCGCTGGTTCTATTC 60.203 57.143 0.00 0.00 0.00 1.75
99 100 1.480954 GGAGGTCGCTGGTTCTATTCA 59.519 52.381 0.00 0.00 0.00 2.57
100 101 2.541556 GAGGTCGCTGGTTCTATTCAC 58.458 52.381 0.00 0.00 0.00 3.18
101 102 1.899814 AGGTCGCTGGTTCTATTCACA 59.100 47.619 0.00 0.00 0.00 3.58
102 103 2.301870 AGGTCGCTGGTTCTATTCACAA 59.698 45.455 0.00 0.00 0.00 3.33
103 104 2.415512 GGTCGCTGGTTCTATTCACAAC 59.584 50.000 0.00 0.00 0.00 3.32
104 105 3.326747 GTCGCTGGTTCTATTCACAACT 58.673 45.455 0.00 0.00 0.00 3.16
105 106 4.491676 GTCGCTGGTTCTATTCACAACTA 58.508 43.478 0.00 0.00 0.00 2.24
106 107 4.563184 GTCGCTGGTTCTATTCACAACTAG 59.437 45.833 0.00 0.00 34.96 2.57
107 108 4.866682 GCTGGTTCTATTCACAACTAGC 57.133 45.455 4.67 4.67 45.94 3.42
111 112 7.470289 CTGGTTCTATTCACAACTAGCATAC 57.530 40.000 0.00 0.00 0.00 2.39
112 113 6.346096 TGGTTCTATTCACAACTAGCATACC 58.654 40.000 0.00 0.00 0.00 2.73
113 114 6.156256 TGGTTCTATTCACAACTAGCATACCT 59.844 38.462 0.00 0.00 0.00 3.08
114 115 7.048512 GGTTCTATTCACAACTAGCATACCTT 58.951 38.462 0.00 0.00 0.00 3.50
115 116 7.553044 GGTTCTATTCACAACTAGCATACCTTT 59.447 37.037 0.00 0.00 0.00 3.11
116 117 8.947115 GTTCTATTCACAACTAGCATACCTTTT 58.053 33.333 0.00 0.00 0.00 2.27
117 118 9.515226 TTCTATTCACAACTAGCATACCTTTTT 57.485 29.630 0.00 0.00 0.00 1.94
118 119 8.946085 TCTATTCACAACTAGCATACCTTTTTG 58.054 33.333 0.00 0.00 0.00 2.44
119 120 5.371115 TCACAACTAGCATACCTTTTTGC 57.629 39.130 0.00 0.00 39.17 3.68
120 121 4.083537 TCACAACTAGCATACCTTTTTGCG 60.084 41.667 0.00 0.00 43.61 4.85
121 122 3.190535 ACAACTAGCATACCTTTTTGCGG 59.809 43.478 0.00 0.00 43.61 5.69
122 123 3.343941 ACTAGCATACCTTTTTGCGGA 57.656 42.857 0.00 0.00 43.61 5.54
123 124 3.886123 ACTAGCATACCTTTTTGCGGAT 58.114 40.909 0.00 0.00 43.61 4.18
124 125 3.877508 ACTAGCATACCTTTTTGCGGATC 59.122 43.478 0.00 0.00 43.61 3.36
125 126 2.722094 AGCATACCTTTTTGCGGATCA 58.278 42.857 0.00 0.00 43.61 2.92
126 127 3.088532 AGCATACCTTTTTGCGGATCAA 58.911 40.909 0.00 0.00 43.61 2.57
127 128 3.509575 AGCATACCTTTTTGCGGATCAAA 59.490 39.130 0.00 0.00 43.61 2.69
137 138 5.697473 TTTGCGGATCAAAACACATAAGA 57.303 34.783 0.00 0.00 41.36 2.10
138 139 5.697473 TTGCGGATCAAAACACATAAGAA 57.303 34.783 0.00 0.00 0.00 2.52
139 140 5.697473 TGCGGATCAAAACACATAAGAAA 57.303 34.783 0.00 0.00 0.00 2.52
140 141 6.078202 TGCGGATCAAAACACATAAGAAAA 57.922 33.333 0.00 0.00 0.00 2.29
141 142 6.686630 TGCGGATCAAAACACATAAGAAAAT 58.313 32.000 0.00 0.00 0.00 1.82
142 143 6.585702 TGCGGATCAAAACACATAAGAAAATG 59.414 34.615 0.00 0.00 0.00 2.32
143 144 6.454186 GCGGATCAAAACACATAAGAAAATGC 60.454 38.462 0.00 0.00 0.00 3.56
144 145 6.808212 CGGATCAAAACACATAAGAAAATGCT 59.192 34.615 0.00 0.00 0.00 3.79
145 146 7.967854 CGGATCAAAACACATAAGAAAATGCTA 59.032 33.333 0.00 0.00 0.00 3.49
146 147 9.294030 GGATCAAAACACATAAGAAAATGCTAG 57.706 33.333 0.00 0.00 0.00 3.42
149 150 9.844790 TCAAAACACATAAGAAAATGCTAGATG 57.155 29.630 0.00 0.00 0.00 2.90
150 151 9.079833 CAAAACACATAAGAAAATGCTAGATGG 57.920 33.333 0.00 0.00 0.00 3.51
151 152 8.579850 AAACACATAAGAAAATGCTAGATGGA 57.420 30.769 0.00 0.00 0.00 3.41
152 153 7.559590 ACACATAAGAAAATGCTAGATGGAC 57.440 36.000 0.00 0.00 0.00 4.02
153 154 7.341805 ACACATAAGAAAATGCTAGATGGACT 58.658 34.615 0.00 0.00 0.00 3.85
154 155 7.281774 ACACATAAGAAAATGCTAGATGGACTG 59.718 37.037 0.00 0.00 0.00 3.51
155 156 6.769822 ACATAAGAAAATGCTAGATGGACTGG 59.230 38.462 0.00 0.00 0.00 4.00
156 157 4.851639 AGAAAATGCTAGATGGACTGGT 57.148 40.909 0.00 0.00 0.00 4.00
157 158 4.775236 AGAAAATGCTAGATGGACTGGTC 58.225 43.478 0.00 0.00 0.00 4.02
180 181 4.376176 CGGGGGCGTCCGTTTGTA 62.376 66.667 0.00 0.00 44.60 2.41
181 182 2.032376 GGGGGCGTCCGTTTGTAA 59.968 61.111 0.00 0.00 36.01 2.41
182 183 1.600356 GGGGGCGTCCGTTTGTAAA 60.600 57.895 0.00 0.00 36.01 2.01
183 184 1.171549 GGGGGCGTCCGTTTGTAAAA 61.172 55.000 0.00 0.00 36.01 1.52
184 185 0.883153 GGGGCGTCCGTTTGTAAAAT 59.117 50.000 0.00 0.00 0.00 1.82
185 186 2.083002 GGGGCGTCCGTTTGTAAAATA 58.917 47.619 0.00 0.00 0.00 1.40
186 187 2.159531 GGGGCGTCCGTTTGTAAAATAC 60.160 50.000 0.00 0.00 0.00 1.89
187 188 2.483491 GGGCGTCCGTTTGTAAAATACA 59.517 45.455 0.00 0.00 36.79 2.29
188 189 3.481839 GGCGTCCGTTTGTAAAATACAC 58.518 45.455 0.00 0.00 38.63 2.90
189 190 3.059051 GGCGTCCGTTTGTAAAATACACA 60.059 43.478 0.00 0.00 38.63 3.72
190 191 4.145997 GCGTCCGTTTGTAAAATACACAG 58.854 43.478 0.00 0.00 38.63 3.66
191 192 4.318974 GCGTCCGTTTGTAAAATACACAGT 60.319 41.667 0.00 0.00 38.63 3.55
192 193 5.107530 GCGTCCGTTTGTAAAATACACAGTA 60.108 40.000 0.00 0.00 38.63 2.74
193 194 6.563753 GCGTCCGTTTGTAAAATACACAGTAA 60.564 38.462 0.00 0.00 38.63 2.24
194 195 6.787043 CGTCCGTTTGTAAAATACACAGTAAC 59.213 38.462 0.00 0.00 38.63 2.50
195 196 7.306749 CGTCCGTTTGTAAAATACACAGTAACT 60.307 37.037 0.00 0.00 38.63 2.24
196 197 7.795272 GTCCGTTTGTAAAATACACAGTAACTG 59.205 37.037 0.00 0.00 38.63 3.16
197 198 6.575942 CCGTTTGTAAAATACACAGTAACTGC 59.424 38.462 0.00 0.00 38.63 4.40
198 199 7.349711 CGTTTGTAAAATACACAGTAACTGCT 58.650 34.615 0.00 0.00 38.63 4.24
199 200 8.489559 CGTTTGTAAAATACACAGTAACTGCTA 58.510 33.333 0.00 0.00 38.63 3.49
200 201 9.807386 GTTTGTAAAATACACAGTAACTGCTAG 57.193 33.333 0.00 0.00 38.63 3.42
201 202 9.767228 TTTGTAAAATACACAGTAACTGCTAGA 57.233 29.630 0.00 0.00 38.63 2.43
202 203 9.767228 TTGTAAAATACACAGTAACTGCTAGAA 57.233 29.630 0.00 0.00 38.63 2.10
203 204 9.767228 TGTAAAATACACAGTAACTGCTAGAAA 57.233 29.630 0.00 0.00 34.37 2.52
229 230 6.431198 AAAAAGCTAGACAACTTTCGACAA 57.569 33.333 0.00 0.00 35.10 3.18
230 231 5.405331 AAAGCTAGACAACTTTCGACAAC 57.595 39.130 0.00 0.00 30.35 3.32
231 232 3.391049 AGCTAGACAACTTTCGACAACC 58.609 45.455 0.00 0.00 0.00 3.77
232 233 3.069729 AGCTAGACAACTTTCGACAACCT 59.930 43.478 0.00 0.00 0.00 3.50
233 234 3.429207 GCTAGACAACTTTCGACAACCTC 59.571 47.826 0.00 0.00 0.00 3.85
234 235 3.536956 AGACAACTTTCGACAACCTCA 57.463 42.857 0.00 0.00 0.00 3.86
235 236 3.869065 AGACAACTTTCGACAACCTCAA 58.131 40.909 0.00 0.00 0.00 3.02
236 237 4.258543 AGACAACTTTCGACAACCTCAAA 58.741 39.130 0.00 0.00 0.00 2.69
237 238 4.094442 AGACAACTTTCGACAACCTCAAAC 59.906 41.667 0.00 0.00 0.00 2.93
238 239 4.007659 ACAACTTTCGACAACCTCAAACT 58.992 39.130 0.00 0.00 0.00 2.66
239 240 4.094442 ACAACTTTCGACAACCTCAAACTC 59.906 41.667 0.00 0.00 0.00 3.01
240 241 4.138487 ACTTTCGACAACCTCAAACTCT 57.862 40.909 0.00 0.00 0.00 3.24
241 242 3.871594 ACTTTCGACAACCTCAAACTCTG 59.128 43.478 0.00 0.00 0.00 3.35
242 243 3.536956 TTCGACAACCTCAAACTCTGT 57.463 42.857 0.00 0.00 0.00 3.41
243 244 3.536956 TCGACAACCTCAAACTCTGTT 57.463 42.857 0.00 0.00 0.00 3.16
244 245 3.194861 TCGACAACCTCAAACTCTGTTG 58.805 45.455 0.00 0.00 42.80 3.33
245 246 3.118920 TCGACAACCTCAAACTCTGTTGA 60.119 43.478 8.09 0.00 40.30 3.18
246 247 3.809832 CGACAACCTCAAACTCTGTTGAT 59.190 43.478 8.09 0.00 40.30 2.57
247 248 4.319046 CGACAACCTCAAACTCTGTTGATG 60.319 45.833 8.09 0.00 40.30 3.07
248 249 3.316308 ACAACCTCAAACTCTGTTGATGC 59.684 43.478 8.09 0.00 40.30 3.91
249 250 2.146342 ACCTCAAACTCTGTTGATGCG 58.854 47.619 0.00 0.00 36.92 4.73
250 251 1.135859 CCTCAAACTCTGTTGATGCGC 60.136 52.381 0.00 0.00 36.92 6.09
251 252 0.874390 TCAAACTCTGTTGATGCGCC 59.126 50.000 4.18 0.00 32.56 6.53
252 253 0.592637 CAAACTCTGTTGATGCGCCA 59.407 50.000 4.18 0.00 0.00 5.69
253 254 0.593128 AAACTCTGTTGATGCGCCAC 59.407 50.000 4.18 0.00 0.00 5.01
254 255 0.250467 AACTCTGTTGATGCGCCACT 60.250 50.000 4.18 0.00 0.00 4.00
255 256 0.608130 ACTCTGTTGATGCGCCACTA 59.392 50.000 4.18 0.00 0.00 2.74
256 257 1.001974 ACTCTGTTGATGCGCCACTAA 59.998 47.619 4.18 0.00 0.00 2.24
257 258 2.076100 CTCTGTTGATGCGCCACTAAA 58.924 47.619 4.18 0.00 0.00 1.85
258 259 2.483877 CTCTGTTGATGCGCCACTAAAA 59.516 45.455 4.18 0.00 0.00 1.52
259 260 2.881513 TCTGTTGATGCGCCACTAAAAA 59.118 40.909 4.18 0.00 0.00 1.94
260 261 3.505680 TCTGTTGATGCGCCACTAAAAAT 59.494 39.130 4.18 0.00 0.00 1.82
261 262 3.573598 TGTTGATGCGCCACTAAAAATG 58.426 40.909 4.18 0.00 0.00 2.32
262 263 2.923020 GTTGATGCGCCACTAAAAATGG 59.077 45.455 4.18 0.00 40.50 3.16
270 271 3.855689 CCACTAAAAATGGCTCTGTGG 57.144 47.619 0.00 0.00 37.69 4.17
271 272 3.157087 CCACTAAAAATGGCTCTGTGGT 58.843 45.455 0.00 0.00 38.75 4.16
272 273 3.573967 CCACTAAAAATGGCTCTGTGGTT 59.426 43.478 0.00 0.00 38.75 3.67
273 274 4.549458 CACTAAAAATGGCTCTGTGGTTG 58.451 43.478 0.00 0.00 0.00 3.77
274 275 4.037923 CACTAAAAATGGCTCTGTGGTTGT 59.962 41.667 0.00 0.00 0.00 3.32
275 276 4.649218 ACTAAAAATGGCTCTGTGGTTGTT 59.351 37.500 0.00 0.00 0.00 2.83
276 277 4.486125 AAAAATGGCTCTGTGGTTGTTT 57.514 36.364 0.00 0.00 0.00 2.83
277 278 3.457610 AAATGGCTCTGTGGTTGTTTG 57.542 42.857 0.00 0.00 0.00 2.93
278 279 2.071778 ATGGCTCTGTGGTTGTTTGT 57.928 45.000 0.00 0.00 0.00 2.83
279 280 1.102154 TGGCTCTGTGGTTGTTTGTG 58.898 50.000 0.00 0.00 0.00 3.33
280 281 1.102978 GGCTCTGTGGTTGTTTGTGT 58.897 50.000 0.00 0.00 0.00 3.72
281 282 1.476488 GGCTCTGTGGTTGTTTGTGTT 59.524 47.619 0.00 0.00 0.00 3.32
282 283 2.685897 GGCTCTGTGGTTGTTTGTGTTA 59.314 45.455 0.00 0.00 0.00 2.41
283 284 3.243068 GGCTCTGTGGTTGTTTGTGTTAG 60.243 47.826 0.00 0.00 0.00 2.34
284 285 3.377172 GCTCTGTGGTTGTTTGTGTTAGT 59.623 43.478 0.00 0.00 0.00 2.24
285 286 4.495844 GCTCTGTGGTTGTTTGTGTTAGTC 60.496 45.833 0.00 0.00 0.00 2.59
286 287 3.619483 TCTGTGGTTGTTTGTGTTAGTCG 59.381 43.478 0.00 0.00 0.00 4.18
287 288 2.678836 TGTGGTTGTTTGTGTTAGTCGG 59.321 45.455 0.00 0.00 0.00 4.79
288 289 2.032426 GTGGTTGTTTGTGTTAGTCGGG 59.968 50.000 0.00 0.00 0.00 5.14
289 290 2.093075 TGGTTGTTTGTGTTAGTCGGGA 60.093 45.455 0.00 0.00 0.00 5.14
290 291 2.944349 GGTTGTTTGTGTTAGTCGGGAA 59.056 45.455 0.00 0.00 0.00 3.97
291 292 3.566742 GGTTGTTTGTGTTAGTCGGGAAT 59.433 43.478 0.00 0.00 0.00 3.01
292 293 4.533222 GTTGTTTGTGTTAGTCGGGAATG 58.467 43.478 0.00 0.00 0.00 2.67
293 294 3.811083 TGTTTGTGTTAGTCGGGAATGT 58.189 40.909 0.00 0.00 0.00 2.71
294 295 4.958509 TGTTTGTGTTAGTCGGGAATGTA 58.041 39.130 0.00 0.00 0.00 2.29
295 296 5.553123 TGTTTGTGTTAGTCGGGAATGTAT 58.447 37.500 0.00 0.00 0.00 2.29
296 297 5.410132 TGTTTGTGTTAGTCGGGAATGTATG 59.590 40.000 0.00 0.00 0.00 2.39
297 298 4.811969 TGTGTTAGTCGGGAATGTATGT 57.188 40.909 0.00 0.00 0.00 2.29
298 299 4.500127 TGTGTTAGTCGGGAATGTATGTG 58.500 43.478 0.00 0.00 0.00 3.21
299 300 4.221041 TGTGTTAGTCGGGAATGTATGTGA 59.779 41.667 0.00 0.00 0.00 3.58
300 301 5.105106 TGTGTTAGTCGGGAATGTATGTGAT 60.105 40.000 0.00 0.00 0.00 3.06
301 302 5.234329 GTGTTAGTCGGGAATGTATGTGATG 59.766 44.000 0.00 0.00 0.00 3.07
302 303 2.838736 AGTCGGGAATGTATGTGATGC 58.161 47.619 0.00 0.00 0.00 3.91
303 304 2.170397 AGTCGGGAATGTATGTGATGCA 59.830 45.455 0.00 0.00 0.00 3.96
304 305 2.287915 GTCGGGAATGTATGTGATGCAC 59.712 50.000 0.00 0.00 34.56 4.57
305 306 1.603802 CGGGAATGTATGTGATGCACC 59.396 52.381 0.00 0.00 32.73 5.01
306 307 1.603802 GGGAATGTATGTGATGCACCG 59.396 52.381 0.00 0.00 32.73 4.94
307 308 1.603802 GGAATGTATGTGATGCACCGG 59.396 52.381 0.00 0.00 32.73 5.28
308 309 1.603802 GAATGTATGTGATGCACCGGG 59.396 52.381 6.32 0.00 32.73 5.73
309 310 0.836606 ATGTATGTGATGCACCGGGA 59.163 50.000 6.32 0.00 32.73 5.14
310 311 0.107897 TGTATGTGATGCACCGGGAC 60.108 55.000 6.32 0.00 32.73 4.46
311 312 0.107897 GTATGTGATGCACCGGGACA 60.108 55.000 6.32 3.15 32.73 4.02
312 313 0.615850 TATGTGATGCACCGGGACAA 59.384 50.000 6.32 0.00 32.73 3.18
313 314 0.034186 ATGTGATGCACCGGGACAAT 60.034 50.000 6.32 0.00 32.73 2.71
314 315 0.251121 TGTGATGCACCGGGACAATT 60.251 50.000 6.32 0.00 32.73 2.32
315 316 1.003696 TGTGATGCACCGGGACAATTA 59.996 47.619 6.32 0.00 32.73 1.40
316 317 1.670811 GTGATGCACCGGGACAATTAG 59.329 52.381 6.32 0.00 0.00 1.73
317 318 1.280710 TGATGCACCGGGACAATTAGT 59.719 47.619 6.32 0.00 0.00 2.24
318 319 1.670811 GATGCACCGGGACAATTAGTG 59.329 52.381 6.32 0.00 0.00 2.74
319 320 0.398696 TGCACCGGGACAATTAGTGT 59.601 50.000 6.32 0.00 45.74 3.55
320 321 1.202830 TGCACCGGGACAATTAGTGTT 60.203 47.619 6.32 0.00 41.96 3.32
321 322 2.038689 TGCACCGGGACAATTAGTGTTA 59.961 45.455 6.32 0.00 41.96 2.41
322 323 2.417586 GCACCGGGACAATTAGTGTTAC 59.582 50.000 6.32 0.00 41.96 2.50
323 324 3.004862 CACCGGGACAATTAGTGTTACC 58.995 50.000 6.32 0.00 41.96 2.85
326 327 3.339253 GGGACAATTAGTGTTACCGGT 57.661 47.619 13.98 13.98 41.96 5.28
327 328 3.264947 GGGACAATTAGTGTTACCGGTC 58.735 50.000 12.40 0.00 41.96 4.79
328 329 3.264947 GGACAATTAGTGTTACCGGTCC 58.735 50.000 12.40 3.21 41.96 4.46
329 330 3.264947 GACAATTAGTGTTACCGGTCCC 58.735 50.000 12.40 2.76 41.96 4.46
330 331 2.026915 ACAATTAGTGTTACCGGTCCCC 60.027 50.000 12.40 0.00 37.01 4.81
331 332 1.206878 ATTAGTGTTACCGGTCCCCC 58.793 55.000 12.40 0.00 0.00 5.40
332 333 0.178909 TTAGTGTTACCGGTCCCCCA 60.179 55.000 12.40 0.00 0.00 4.96
333 334 0.043032 TAGTGTTACCGGTCCCCCAT 59.957 55.000 12.40 0.00 0.00 4.00
334 335 0.843343 AGTGTTACCGGTCCCCCATT 60.843 55.000 12.40 0.00 0.00 3.16
335 336 0.911053 GTGTTACCGGTCCCCCATTA 59.089 55.000 12.40 0.00 0.00 1.90
336 337 0.911053 TGTTACCGGTCCCCCATTAC 59.089 55.000 12.40 0.00 0.00 1.89
337 338 0.911053 GTTACCGGTCCCCCATTACA 59.089 55.000 12.40 0.00 0.00 2.41
338 339 0.911053 TTACCGGTCCCCCATTACAC 59.089 55.000 12.40 0.00 0.00 2.90
339 340 0.252604 TACCGGTCCCCCATTACACA 60.253 55.000 12.40 0.00 0.00 3.72
340 341 0.917333 ACCGGTCCCCCATTACACAT 60.917 55.000 0.00 0.00 0.00 3.21
341 342 0.257616 CCGGTCCCCCATTACACATT 59.742 55.000 0.00 0.00 0.00 2.71
342 343 1.341581 CCGGTCCCCCATTACACATTT 60.342 52.381 0.00 0.00 0.00 2.32
343 344 2.452505 CGGTCCCCCATTACACATTTT 58.547 47.619 0.00 0.00 0.00 1.82
344 345 3.622630 CGGTCCCCCATTACACATTTTA 58.377 45.455 0.00 0.00 0.00 1.52
345 346 4.017808 CGGTCCCCCATTACACATTTTAA 58.982 43.478 0.00 0.00 0.00 1.52
346 347 4.463186 CGGTCCCCCATTACACATTTTAAA 59.537 41.667 0.00 0.00 0.00 1.52
347 348 5.047235 CGGTCCCCCATTACACATTTTAAAA 60.047 40.000 2.51 2.51 0.00 1.52
348 349 6.351456 CGGTCCCCCATTACACATTTTAAAAT 60.351 38.462 7.64 7.64 0.00 1.82
393 394 6.825284 TTTTTAGTGCATTGACACAACATG 57.175 33.333 11.85 0.00 43.23 3.21
394 395 5.764487 TTTAGTGCATTGACACAACATGA 57.236 34.783 0.00 0.00 43.23 3.07
395 396 5.764487 TTAGTGCATTGACACAACATGAA 57.236 34.783 0.00 0.00 43.23 2.57
396 397 4.859304 AGTGCATTGACACAACATGAAT 57.141 36.364 0.00 0.00 43.23 2.57
397 398 4.552355 AGTGCATTGACACAACATGAATG 58.448 39.130 0.00 0.09 43.23 2.67
398 399 4.038282 AGTGCATTGACACAACATGAATGT 59.962 37.500 0.00 0.82 43.23 2.71
399 400 5.241285 AGTGCATTGACACAACATGAATGTA 59.759 36.000 0.00 0.00 43.23 2.29
400 401 6.071784 AGTGCATTGACACAACATGAATGTAT 60.072 34.615 0.00 0.00 43.23 2.29
401 402 6.034150 GTGCATTGACACAACATGAATGTATG 59.966 38.462 0.00 6.18 40.80 2.39
402 403 6.094719 GCATTGACACAACATGAATGTATGT 58.905 36.000 0.00 11.19 42.82 2.29
411 412 6.631971 AACATGAATGTATGTTGTCACACA 57.368 33.333 0.00 0.00 46.44 3.72
412 413 6.631971 ACATGAATGTATGTTGTCACACAA 57.368 33.333 0.00 0.00 38.05 3.33
413 414 7.036996 ACATGAATGTATGTTGTCACACAAA 57.963 32.000 0.00 0.00 38.41 2.83
414 415 7.660112 ACATGAATGTATGTTGTCACACAAAT 58.340 30.769 0.00 0.00 38.41 2.32
415 416 8.143193 ACATGAATGTATGTTGTCACACAAATT 58.857 29.630 0.00 0.00 38.41 1.82
416 417 8.980610 CATGAATGTATGTTGTCACACAAATTT 58.019 29.630 0.00 0.00 40.15 1.82
441 442 9.790433 TTAAATCAAAATTCGAAAAATTGCTCG 57.210 25.926 0.00 3.61 36.39 5.03
442 443 7.636259 AATCAAAATTCGAAAAATTGCTCGA 57.364 28.000 0.00 7.79 42.05 4.04
493 494 9.758651 TGAATAATACATGATACAAGTTACGCT 57.241 29.630 0.00 0.00 0.00 5.07
496 497 9.758651 ATAATACATGATACAAGTTACGCTTCA 57.241 29.630 0.00 0.00 34.69 3.02
497 498 8.487313 AATACATGATACAAGTTACGCTTCAA 57.513 30.769 0.00 0.00 34.69 2.69
498 499 6.985188 ACATGATACAAGTTACGCTTCAAT 57.015 33.333 0.00 0.00 34.69 2.57
499 500 7.377766 ACATGATACAAGTTACGCTTCAATT 57.622 32.000 0.00 0.00 34.69 2.32
500 501 7.464358 ACATGATACAAGTTACGCTTCAATTC 58.536 34.615 0.00 0.00 34.69 2.17
501 502 7.334421 ACATGATACAAGTTACGCTTCAATTCT 59.666 33.333 0.00 0.00 34.69 2.40
502 503 7.060600 TGATACAAGTTACGCTTCAATTCTG 57.939 36.000 0.00 0.00 34.69 3.02
503 504 4.749245 ACAAGTTACGCTTCAATTCTGG 57.251 40.909 0.00 0.00 34.69 3.86
504 505 3.058224 ACAAGTTACGCTTCAATTCTGGC 60.058 43.478 0.00 0.00 34.69 4.85
505 506 2.084546 AGTTACGCTTCAATTCTGGCC 58.915 47.619 0.00 0.00 0.00 5.36
506 507 2.084546 GTTACGCTTCAATTCTGGCCT 58.915 47.619 3.32 0.00 0.00 5.19
507 508 3.055385 AGTTACGCTTCAATTCTGGCCTA 60.055 43.478 3.32 0.00 0.00 3.93
508 509 2.717639 ACGCTTCAATTCTGGCCTAT 57.282 45.000 3.32 0.00 0.00 2.57
509 510 3.004752 ACGCTTCAATTCTGGCCTATT 57.995 42.857 3.32 0.00 0.00 1.73
510 511 4.150897 ACGCTTCAATTCTGGCCTATTA 57.849 40.909 3.32 0.00 0.00 0.98
511 512 4.523083 ACGCTTCAATTCTGGCCTATTAA 58.477 39.130 3.32 0.00 0.00 1.40
512 513 4.576463 ACGCTTCAATTCTGGCCTATTAAG 59.424 41.667 3.32 7.26 0.00 1.85
513 514 4.816385 CGCTTCAATTCTGGCCTATTAAGA 59.184 41.667 3.32 0.00 0.00 2.10
514 515 5.277538 CGCTTCAATTCTGGCCTATTAAGAC 60.278 44.000 3.32 3.40 0.00 3.01
515 516 5.590259 GCTTCAATTCTGGCCTATTAAGACA 59.410 40.000 3.32 0.00 0.00 3.41
516 517 6.264067 GCTTCAATTCTGGCCTATTAAGACAT 59.736 38.462 3.32 0.00 0.00 3.06
517 518 7.201857 GCTTCAATTCTGGCCTATTAAGACATT 60.202 37.037 3.32 0.00 0.00 2.71
518 519 9.342308 CTTCAATTCTGGCCTATTAAGACATTA 57.658 33.333 3.32 0.00 0.00 1.90
519 520 9.693739 TTCAATTCTGGCCTATTAAGACATTAA 57.306 29.630 3.32 0.00 35.41 1.40
520 521 9.866655 TCAATTCTGGCCTATTAAGACATTAAT 57.133 29.630 3.32 0.00 42.79 1.40
521 522 9.903682 CAATTCTGGCCTATTAAGACATTAATG 57.096 33.333 14.01 14.01 40.88 1.90
522 523 9.646522 AATTCTGGCCTATTAAGACATTAATGT 57.353 29.630 20.93 20.93 40.88 2.71
558 559 5.356882 AAAAATCTCGAGCAATGTTTCGA 57.643 34.783 7.81 10.47 42.91 3.71
559 560 5.356882 AAAATCTCGAGCAATGTTTCGAA 57.643 34.783 7.81 0.00 44.25 3.71
560 561 5.551760 AAATCTCGAGCAATGTTTCGAAT 57.448 34.783 7.81 7.06 44.25 3.34
561 562 5.551760 AATCTCGAGCAATGTTTCGAATT 57.448 34.783 7.81 10.92 44.25 2.17
562 563 5.551760 ATCTCGAGCAATGTTTCGAATTT 57.448 34.783 7.81 0.00 44.25 1.82
563 564 5.356882 TCTCGAGCAATGTTTCGAATTTT 57.643 34.783 7.81 0.00 44.25 1.82
564 565 5.146460 TCTCGAGCAATGTTTCGAATTTTG 58.854 37.500 7.81 4.87 44.25 2.44
565 566 5.049749 TCTCGAGCAATGTTTCGAATTTTGA 60.050 36.000 7.81 4.60 44.25 2.69
566 567 5.698832 TCGAGCAATGTTTCGAATTTTGAT 58.301 33.333 15.39 10.93 42.27 2.57
567 568 6.148948 TCGAGCAATGTTTCGAATTTTGATT 58.851 32.000 15.39 6.14 42.27 2.57
568 569 6.640499 TCGAGCAATGTTTCGAATTTTGATTT 59.360 30.769 15.39 4.36 42.27 2.17
569 570 7.168972 TCGAGCAATGTTTCGAATTTTGATTTT 59.831 29.630 15.39 2.61 42.27 1.82
570 571 8.423973 CGAGCAATGTTTCGAATTTTGATTTTA 58.576 29.630 15.39 0.00 39.06 1.52
571 572 9.731519 GAGCAATGTTTCGAATTTTGATTTTAG 57.268 29.630 15.39 0.00 0.00 1.85
572 573 9.260002 AGCAATGTTTCGAATTTTGATTTTAGT 57.740 25.926 15.39 0.00 0.00 2.24
573 574 9.862585 GCAATGTTTCGAATTTTGATTTTAGTT 57.137 25.926 15.39 0.00 0.00 2.24
589 590 9.583530 TGATTTTAGTTTTTATGACAACGTACG 57.416 29.630 15.01 15.01 0.00 3.67
590 591 9.584839 GATTTTAGTTTTTATGACAACGTACGT 57.415 29.630 16.72 16.72 0.00 3.57
591 592 9.934190 ATTTTAGTTTTTATGACAACGTACGTT 57.066 25.926 27.15 27.15 39.13 3.99
601 602 2.857592 AACGTACGTTGACAGAGTGT 57.142 45.000 31.29 4.36 36.91 3.55
658 659 3.030652 GTGCAACAAGGTCCGGTG 58.969 61.111 0.00 0.00 36.32 4.94
659 660 2.904866 TGCAACAAGGTCCGGTGC 60.905 61.111 0.00 2.03 0.00 5.01
660 661 2.904866 GCAACAAGGTCCGGTGCA 60.905 61.111 0.00 0.00 0.00 4.57
661 662 3.030652 CAACAAGGTCCGGTGCAC 58.969 61.111 8.80 8.80 0.00 4.57
662 663 2.203294 AACAAGGTCCGGTGCACC 60.203 61.111 26.78 26.78 0.00 5.01
672 673 2.267642 GGTGCACCGGTAGCATCA 59.732 61.111 26.99 11.44 44.79 3.07
673 674 1.376683 GGTGCACCGGTAGCATCAA 60.377 57.895 26.99 9.17 44.79 2.57
674 675 0.748005 GGTGCACCGGTAGCATCAAT 60.748 55.000 26.99 0.00 44.79 2.57
675 676 1.094785 GTGCACCGGTAGCATCAATT 58.905 50.000 26.82 0.00 44.79 2.32
676 677 1.093972 TGCACCGGTAGCATCAATTG 58.906 50.000 22.47 0.00 37.02 2.32
684 685 2.495866 GCATCAATTGCCCCGGTG 59.504 61.111 0.00 0.00 46.15 4.94
685 686 2.495866 CATCAATTGCCCCGGTGC 59.504 61.111 0.23 0.23 0.00 5.01
686 687 2.037049 ATCAATTGCCCCGGTGCA 59.963 55.556 7.80 7.80 40.07 4.57
687 688 2.350458 ATCAATTGCCCCGGTGCAC 61.350 57.895 12.48 8.80 41.88 4.57
688 689 4.067913 CAATTGCCCCGGTGCACC 62.068 66.667 26.78 26.78 41.88 5.01
689 690 4.612279 AATTGCCCCGGTGCACCA 62.612 61.111 34.16 15.28 41.88 4.17
693 694 3.792736 GCCCCGGTGCACCAGATA 61.793 66.667 34.16 0.00 35.14 1.98
694 695 2.189521 CCCCGGTGCACCAGATAC 59.810 66.667 34.16 7.59 35.14 2.24
695 696 2.202878 CCCGGTGCACCAGATACG 60.203 66.667 34.16 19.00 35.14 3.06
696 697 2.577059 CCGGTGCACCAGATACGT 59.423 61.111 34.16 0.00 35.14 3.57
697 698 1.079405 CCGGTGCACCAGATACGTT 60.079 57.895 34.16 0.00 35.14 3.99
698 699 1.082117 CCGGTGCACCAGATACGTTC 61.082 60.000 34.16 4.51 35.14 3.95
699 700 1.082117 CGGTGCACCAGATACGTTCC 61.082 60.000 34.16 3.99 35.14 3.62
700 701 0.743345 GGTGCACCAGATACGTTCCC 60.743 60.000 31.23 0.00 35.64 3.97
705 706 1.275291 CACCAGATACGTTCCCTGTGT 59.725 52.381 0.00 0.00 0.00 3.72
709 710 3.446161 CCAGATACGTTCCCTGTGTTAGA 59.554 47.826 0.00 0.00 0.00 2.10
712 713 5.067936 CAGATACGTTCCCTGTGTTAGATCT 59.932 44.000 0.00 0.00 0.00 2.75
721 722 4.508662 CCTGTGTTAGATCTCCCTGTTTC 58.491 47.826 0.00 0.00 0.00 2.78
756 758 3.183237 GTAAGCTGTTGGCGTACTTTG 57.817 47.619 6.49 0.00 46.90 2.77
839 844 4.690280 CCAATAAAACACAAATGGAGCCAC 59.310 41.667 0.00 0.00 0.00 5.01
899 940 3.745975 CACGCCTGAACAAGATAGAAACA 59.254 43.478 0.00 0.00 0.00 2.83
950 991 5.248705 AGAGAAGAAAACGGAAGGATAGGTT 59.751 40.000 0.00 0.00 0.00 3.50
957 998 1.067071 CGGAAGGATAGGTTATCGGCC 60.067 57.143 0.00 0.00 36.03 6.13
1240 1299 3.806380 TCGTCTCTAGTACTCCATGGAC 58.194 50.000 11.44 1.44 0.00 4.02
1259 1318 6.701145 TGGACATCTAGCTTGAAGTAGTAG 57.299 41.667 6.03 0.00 0.00 2.57
1301 1367 6.737131 TCCATGGATATCTGGGTCAAATAGAT 59.263 38.462 11.44 0.00 35.49 1.98
1327 1393 0.455464 TGCGTCTCGTATCGGTTGTG 60.455 55.000 0.00 0.00 0.00 3.33
1340 1406 2.033675 TCGGTTGTGTCACGCGATATAT 59.966 45.455 15.93 0.00 0.00 0.86
1346 1412 7.442657 GGTTGTGTCACGCGATATATTAATAC 58.557 38.462 15.93 0.00 0.00 1.89
1347 1413 6.842081 TGTGTCACGCGATATATTAATACG 57.158 37.500 15.93 0.00 0.00 3.06
1402 1533 8.605746 GCTGAATGAAATTTTATTATTGCAGCA 58.394 29.630 25.76 12.71 41.33 4.41
1442 1573 3.340814 AACTGTCTCCGCTTCATCAAT 57.659 42.857 0.00 0.00 0.00 2.57
1583 1791 9.730705 TCTCACATCAAGATCTTAAAACATCTT 57.269 29.630 7.86 0.00 39.49 2.40
1584 1792 9.985318 CTCACATCAAGATCTTAAAACATCTTC 57.015 33.333 7.86 0.00 37.27 2.87
1585 1793 8.659491 TCACATCAAGATCTTAAAACATCTTCG 58.341 33.333 7.86 0.00 37.27 3.79
1586 1794 7.907045 CACATCAAGATCTTAAAACATCTTCGG 59.093 37.037 7.86 0.00 37.27 4.30
1587 1795 7.607991 ACATCAAGATCTTAAAACATCTTCGGT 59.392 33.333 7.86 0.00 37.27 4.69
1588 1796 7.979444 TCAAGATCTTAAAACATCTTCGGTT 57.021 32.000 7.86 0.00 37.27 4.44
1589 1797 8.029642 TCAAGATCTTAAAACATCTTCGGTTC 57.970 34.615 7.86 0.00 37.27 3.62
1590 1798 7.659799 TCAAGATCTTAAAACATCTTCGGTTCA 59.340 33.333 7.86 0.00 37.27 3.18
1591 1799 7.979444 AGATCTTAAAACATCTTCGGTTCAA 57.021 32.000 0.00 0.00 0.00 2.69
1592 1800 8.391075 AGATCTTAAAACATCTTCGGTTCAAA 57.609 30.769 0.00 0.00 0.00 2.69
1593 1801 8.846211 AGATCTTAAAACATCTTCGGTTCAAAA 58.154 29.630 0.00 0.00 0.00 2.44
1594 1802 9.458374 GATCTTAAAACATCTTCGGTTCAAAAA 57.542 29.630 0.00 0.00 0.00 1.94
1785 4735 4.348863 AACTCACAGCAGATATCCCATC 57.651 45.455 0.00 0.00 0.00 3.51
1858 4809 0.874390 GCGAATGAGGTGTTCTGCAA 59.126 50.000 0.00 0.00 0.00 4.08
1861 4812 2.549754 CGAATGAGGTGTTCTGCAACTT 59.450 45.455 0.00 0.00 46.91 2.66
1866 4817 4.460263 TGAGGTGTTCTGCAACTTACAAT 58.540 39.130 0.00 0.00 46.91 2.71
1913 4866 6.651755 TTTATTACTACGGTACAAGCAAGC 57.348 37.500 0.00 0.00 0.00 4.01
1922 4875 4.093952 CAAGCAAGCGAGCGTGGG 62.094 66.667 12.43 0.00 39.77 4.61
1926 4879 3.414700 CAAGCGAGCGTGGGTCAC 61.415 66.667 3.12 0.00 0.00 3.67
1927 4880 4.681978 AAGCGAGCGTGGGTCACC 62.682 66.667 0.00 0.00 37.24 4.02
1968 4921 2.680352 TCGAGGCTGGAGTCCACC 60.680 66.667 8.12 14.59 0.00 4.61
2127 5080 2.125350 GGAGACTGCTGCTTCGGG 60.125 66.667 0.00 0.00 0.00 5.14
2143 5096 2.125912 GGTGCTCGTCGTGATGCT 60.126 61.111 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.857957 TTCGTAACATTCAACTTTTACCTTTTT 57.142 25.926 0.00 0.00 0.00 1.94
10 11 9.673454 GATTCGTAACATTCAACTTTTACCTTT 57.327 29.630 0.00 0.00 0.00 3.11
11 12 8.294577 GGATTCGTAACATTCAACTTTTACCTT 58.705 33.333 0.00 0.00 0.00 3.50
12 13 7.664318 AGGATTCGTAACATTCAACTTTTACCT 59.336 33.333 0.00 0.00 0.00 3.08
13 14 7.749126 CAGGATTCGTAACATTCAACTTTTACC 59.251 37.037 0.00 0.00 0.00 2.85
14 15 7.270579 GCAGGATTCGTAACATTCAACTTTTAC 59.729 37.037 0.00 0.00 0.00 2.01
15 16 7.174253 AGCAGGATTCGTAACATTCAACTTTTA 59.826 33.333 0.00 0.00 0.00 1.52
16 17 6.016276 AGCAGGATTCGTAACATTCAACTTTT 60.016 34.615 0.00 0.00 0.00 2.27
17 18 5.473504 AGCAGGATTCGTAACATTCAACTTT 59.526 36.000 0.00 0.00 0.00 2.66
18 19 5.003804 AGCAGGATTCGTAACATTCAACTT 58.996 37.500 0.00 0.00 0.00 2.66
19 20 4.579869 AGCAGGATTCGTAACATTCAACT 58.420 39.130 0.00 0.00 0.00 3.16
20 21 4.946784 AGCAGGATTCGTAACATTCAAC 57.053 40.909 0.00 0.00 0.00 3.18
21 22 5.116180 CCTAGCAGGATTCGTAACATTCAA 58.884 41.667 0.00 0.00 37.67 2.69
22 23 4.161565 ACCTAGCAGGATTCGTAACATTCA 59.838 41.667 8.91 0.00 37.67 2.57
23 24 4.508124 CACCTAGCAGGATTCGTAACATTC 59.492 45.833 8.91 0.00 37.67 2.67
24 25 4.442706 CACCTAGCAGGATTCGTAACATT 58.557 43.478 8.91 0.00 37.67 2.71
25 26 3.181465 CCACCTAGCAGGATTCGTAACAT 60.181 47.826 8.91 0.00 37.67 2.71
26 27 2.167693 CCACCTAGCAGGATTCGTAACA 59.832 50.000 8.91 0.00 37.67 2.41
27 28 2.822764 CCACCTAGCAGGATTCGTAAC 58.177 52.381 8.91 0.00 37.67 2.50
28 29 1.138266 GCCACCTAGCAGGATTCGTAA 59.862 52.381 8.91 0.00 37.67 3.18
29 30 0.750850 GCCACCTAGCAGGATTCGTA 59.249 55.000 8.91 0.00 37.67 3.43
30 31 1.522569 GCCACCTAGCAGGATTCGT 59.477 57.895 8.91 0.00 37.67 3.85
31 32 1.592669 CGCCACCTAGCAGGATTCG 60.593 63.158 8.91 5.27 37.67 3.34
32 33 1.227674 CCGCCACCTAGCAGGATTC 60.228 63.158 8.91 0.00 37.67 2.52
33 34 2.746375 CCCGCCACCTAGCAGGATT 61.746 63.158 8.91 0.00 37.67 3.01
34 35 3.164269 CCCGCCACCTAGCAGGAT 61.164 66.667 8.91 0.00 37.67 3.24
37 38 4.473520 CACCCCGCCACCTAGCAG 62.474 72.222 0.00 0.00 0.00 4.24
40 41 1.991167 TAACCACCCCGCCACCTAG 60.991 63.158 0.00 0.00 0.00 3.02
41 42 2.122280 TAACCACCCCGCCACCTA 59.878 61.111 0.00 0.00 0.00 3.08
42 43 3.643554 GTAACCACCCCGCCACCT 61.644 66.667 0.00 0.00 0.00 4.00
43 44 3.956314 TGTAACCACCCCGCCACC 61.956 66.667 0.00 0.00 0.00 4.61
44 45 1.829523 TAGTGTAACCACCCCGCCAC 61.830 60.000 0.00 0.00 42.88 5.01
45 46 1.535930 TAGTGTAACCACCCCGCCA 60.536 57.895 0.00 0.00 42.88 5.69
46 47 1.078918 GTAGTGTAACCACCCCGCC 60.079 63.158 0.00 0.00 42.88 6.13
47 48 1.078918 GGTAGTGTAACCACCCCGC 60.079 63.158 0.00 0.00 42.88 6.13
48 49 1.216178 CGGTAGTGTAACCACCCCG 59.784 63.158 7.02 7.02 44.79 5.73
49 50 1.204704 GTACGGTAGTGTAACCACCCC 59.795 57.143 0.00 0.00 42.88 4.95
50 51 1.204704 GGTACGGTAGTGTAACCACCC 59.795 57.143 0.00 0.00 42.88 4.61
51 52 2.654749 GGTACGGTAGTGTAACCACC 57.345 55.000 0.00 0.00 42.88 4.61
55 56 1.459450 TCGGGGTACGGTAGTGTAAC 58.541 55.000 0.00 0.00 44.45 2.50
56 57 2.435372 ATCGGGGTACGGTAGTGTAA 57.565 50.000 0.00 0.00 44.45 2.41
57 58 3.476552 CTTATCGGGGTACGGTAGTGTA 58.523 50.000 0.00 0.00 39.71 2.90
58 59 2.301346 CTTATCGGGGTACGGTAGTGT 58.699 52.381 0.00 0.00 39.71 3.55
59 60 1.610522 CCTTATCGGGGTACGGTAGTG 59.389 57.143 0.00 0.00 39.71 2.74
60 61 1.986882 CCTTATCGGGGTACGGTAGT 58.013 55.000 0.00 0.00 39.71 2.73
71 72 1.364171 CAGCGACCTCCCTTATCGG 59.636 63.158 0.00 0.00 36.37 4.18
72 73 1.364171 CCAGCGACCTCCCTTATCG 59.636 63.158 0.00 0.00 38.87 2.92
73 74 0.831307 AACCAGCGACCTCCCTTATC 59.169 55.000 0.00 0.00 0.00 1.75
74 75 0.831307 GAACCAGCGACCTCCCTTAT 59.169 55.000 0.00 0.00 0.00 1.73
75 76 0.252103 AGAACCAGCGACCTCCCTTA 60.252 55.000 0.00 0.00 0.00 2.69
76 77 0.252103 TAGAACCAGCGACCTCCCTT 60.252 55.000 0.00 0.00 0.00 3.95
77 78 0.032017 ATAGAACCAGCGACCTCCCT 60.032 55.000 0.00 0.00 0.00 4.20
78 79 0.831307 AATAGAACCAGCGACCTCCC 59.169 55.000 0.00 0.00 0.00 4.30
79 80 1.480954 TGAATAGAACCAGCGACCTCC 59.519 52.381 0.00 0.00 0.00 4.30
80 81 2.094182 TGTGAATAGAACCAGCGACCTC 60.094 50.000 0.00 0.00 0.00 3.85
81 82 1.899814 TGTGAATAGAACCAGCGACCT 59.100 47.619 0.00 0.00 0.00 3.85
82 83 2.380084 TGTGAATAGAACCAGCGACC 57.620 50.000 0.00 0.00 0.00 4.79
83 84 3.326747 AGTTGTGAATAGAACCAGCGAC 58.673 45.455 0.00 0.00 30.80 5.19
84 85 3.678056 AGTTGTGAATAGAACCAGCGA 57.322 42.857 0.00 0.00 30.80 4.93
85 86 3.307242 GCTAGTTGTGAATAGAACCAGCG 59.693 47.826 0.00 0.00 35.76 5.18
86 87 4.253685 TGCTAGTTGTGAATAGAACCAGC 58.746 43.478 0.00 0.00 42.37 4.85
87 88 6.480320 GGTATGCTAGTTGTGAATAGAACCAG 59.520 42.308 0.00 0.00 30.80 4.00
88 89 6.156256 AGGTATGCTAGTTGTGAATAGAACCA 59.844 38.462 0.00 0.00 30.80 3.67
89 90 6.583562 AGGTATGCTAGTTGTGAATAGAACC 58.416 40.000 0.00 0.00 30.80 3.62
90 91 8.494016 AAAGGTATGCTAGTTGTGAATAGAAC 57.506 34.615 0.00 0.00 0.00 3.01
91 92 9.515226 AAAAAGGTATGCTAGTTGTGAATAGAA 57.485 29.630 0.00 0.00 0.00 2.10
92 93 8.946085 CAAAAAGGTATGCTAGTTGTGAATAGA 58.054 33.333 0.00 0.00 0.00 1.98
93 94 7.698130 GCAAAAAGGTATGCTAGTTGTGAATAG 59.302 37.037 0.00 0.00 39.46 1.73
94 95 7.535139 GCAAAAAGGTATGCTAGTTGTGAATA 58.465 34.615 0.00 0.00 39.46 1.75
95 96 6.389906 GCAAAAAGGTATGCTAGTTGTGAAT 58.610 36.000 0.00 0.00 39.46 2.57
96 97 5.561919 CGCAAAAAGGTATGCTAGTTGTGAA 60.562 40.000 0.00 0.00 40.39 3.18
97 98 4.083537 CGCAAAAAGGTATGCTAGTTGTGA 60.084 41.667 0.00 0.00 40.39 3.58
98 99 4.158384 CGCAAAAAGGTATGCTAGTTGTG 58.842 43.478 0.00 0.00 40.39 3.33
99 100 3.190535 CCGCAAAAAGGTATGCTAGTTGT 59.809 43.478 0.00 0.00 40.39 3.32
100 101 3.438781 TCCGCAAAAAGGTATGCTAGTTG 59.561 43.478 0.00 0.00 40.39 3.16
101 102 3.681593 TCCGCAAAAAGGTATGCTAGTT 58.318 40.909 0.00 0.00 40.39 2.24
102 103 3.343941 TCCGCAAAAAGGTATGCTAGT 57.656 42.857 0.00 0.00 40.39 2.57
103 104 3.876914 TGATCCGCAAAAAGGTATGCTAG 59.123 43.478 0.00 0.00 40.39 3.42
104 105 3.879998 TGATCCGCAAAAAGGTATGCTA 58.120 40.909 0.00 0.00 40.39 3.49
105 106 2.722094 TGATCCGCAAAAAGGTATGCT 58.278 42.857 0.00 0.00 40.39 3.79
106 107 3.502191 TTGATCCGCAAAAAGGTATGC 57.498 42.857 0.00 0.00 39.17 3.14
115 116 5.697473 TCTTATGTGTTTTGATCCGCAAA 57.303 34.783 0.00 0.00 44.38 3.68
116 117 5.697473 TTCTTATGTGTTTTGATCCGCAA 57.303 34.783 0.00 0.00 33.88 4.85
117 118 5.697473 TTTCTTATGTGTTTTGATCCGCA 57.303 34.783 0.00 0.00 0.00 5.69
118 119 6.454186 GCATTTTCTTATGTGTTTTGATCCGC 60.454 38.462 0.00 0.00 0.00 5.54
119 120 6.808212 AGCATTTTCTTATGTGTTTTGATCCG 59.192 34.615 0.00 0.00 0.00 4.18
120 121 9.294030 CTAGCATTTTCTTATGTGTTTTGATCC 57.706 33.333 0.00 0.00 0.00 3.36
123 124 9.844790 CATCTAGCATTTTCTTATGTGTTTTGA 57.155 29.630 0.00 0.00 0.00 2.69
124 125 9.079833 CCATCTAGCATTTTCTTATGTGTTTTG 57.920 33.333 0.00 0.00 0.00 2.44
125 126 9.023962 TCCATCTAGCATTTTCTTATGTGTTTT 57.976 29.630 0.00 0.00 0.00 2.43
126 127 8.462016 GTCCATCTAGCATTTTCTTATGTGTTT 58.538 33.333 0.00 0.00 0.00 2.83
127 128 7.831193 AGTCCATCTAGCATTTTCTTATGTGTT 59.169 33.333 0.00 0.00 0.00 3.32
128 129 7.281774 CAGTCCATCTAGCATTTTCTTATGTGT 59.718 37.037 0.00 0.00 0.00 3.72
129 130 7.255035 CCAGTCCATCTAGCATTTTCTTATGTG 60.255 40.741 0.00 0.00 0.00 3.21
130 131 6.769822 CCAGTCCATCTAGCATTTTCTTATGT 59.230 38.462 0.00 0.00 0.00 2.29
131 132 6.769822 ACCAGTCCATCTAGCATTTTCTTATG 59.230 38.462 0.00 0.00 0.00 1.90
132 133 6.904626 ACCAGTCCATCTAGCATTTTCTTAT 58.095 36.000 0.00 0.00 0.00 1.73
133 134 6.313519 ACCAGTCCATCTAGCATTTTCTTA 57.686 37.500 0.00 0.00 0.00 2.10
134 135 5.184892 ACCAGTCCATCTAGCATTTTCTT 57.815 39.130 0.00 0.00 0.00 2.52
135 136 4.775236 GACCAGTCCATCTAGCATTTTCT 58.225 43.478 0.00 0.00 0.00 2.52
164 165 1.171549 TTTTACAAACGGACGCCCCC 61.172 55.000 0.00 0.00 0.00 5.40
165 166 0.883153 ATTTTACAAACGGACGCCCC 59.117 50.000 0.00 0.00 0.00 5.80
166 167 2.483491 TGTATTTTACAAACGGACGCCC 59.517 45.455 0.00 0.00 35.38 6.13
167 168 3.059051 TGTGTATTTTACAAACGGACGCC 60.059 43.478 0.00 0.00 40.93 5.68
168 169 4.131202 TGTGTATTTTACAAACGGACGC 57.869 40.909 0.00 0.00 40.93 5.19
169 170 5.333046 ACTGTGTATTTTACAAACGGACG 57.667 39.130 0.00 0.00 40.93 4.79
170 171 7.795272 CAGTTACTGTGTATTTTACAAACGGAC 59.205 37.037 3.88 0.00 40.93 4.79
171 172 7.518689 GCAGTTACTGTGTATTTTACAAACGGA 60.519 37.037 14.23 0.00 40.93 4.69
172 173 6.575942 GCAGTTACTGTGTATTTTACAAACGG 59.424 38.462 14.23 0.00 40.93 4.44
173 174 7.349711 AGCAGTTACTGTGTATTTTACAAACG 58.650 34.615 14.23 0.00 40.93 3.60
174 175 9.807386 CTAGCAGTTACTGTGTATTTTACAAAC 57.193 33.333 14.23 0.00 40.93 2.93
175 176 9.767228 TCTAGCAGTTACTGTGTATTTTACAAA 57.233 29.630 14.23 0.00 40.93 2.83
176 177 9.767228 TTCTAGCAGTTACTGTGTATTTTACAA 57.233 29.630 14.23 0.00 40.93 2.41
177 178 9.767228 TTTCTAGCAGTTACTGTGTATTTTACA 57.233 29.630 14.23 0.00 33.43 2.41
206 207 6.255950 GTTGTCGAAAGTTGTCTAGCTTTTT 58.744 36.000 0.00 0.00 37.45 1.94
207 208 5.220796 GGTTGTCGAAAGTTGTCTAGCTTTT 60.221 40.000 0.00 0.00 37.45 2.27
208 209 4.272748 GGTTGTCGAAAGTTGTCTAGCTTT 59.727 41.667 0.00 0.00 39.62 3.51
209 210 3.808174 GGTTGTCGAAAGTTGTCTAGCTT 59.192 43.478 0.00 0.00 0.00 3.74
210 211 3.069729 AGGTTGTCGAAAGTTGTCTAGCT 59.930 43.478 0.00 0.00 0.00 3.32
211 212 3.391049 AGGTTGTCGAAAGTTGTCTAGC 58.609 45.455 0.00 0.00 0.00 3.42
212 213 4.617959 TGAGGTTGTCGAAAGTTGTCTAG 58.382 43.478 0.00 0.00 0.00 2.43
213 214 4.659111 TGAGGTTGTCGAAAGTTGTCTA 57.341 40.909 0.00 0.00 0.00 2.59
214 215 3.536956 TGAGGTTGTCGAAAGTTGTCT 57.463 42.857 0.00 0.00 0.00 3.41
215 216 4.094442 AGTTTGAGGTTGTCGAAAGTTGTC 59.906 41.667 0.00 0.00 29.69 3.18
216 217 4.007659 AGTTTGAGGTTGTCGAAAGTTGT 58.992 39.130 0.00 0.00 29.69 3.32
217 218 4.332819 AGAGTTTGAGGTTGTCGAAAGTTG 59.667 41.667 0.00 0.00 29.69 3.16
218 219 4.332819 CAGAGTTTGAGGTTGTCGAAAGTT 59.667 41.667 0.00 0.00 29.69 2.66
219 220 3.871594 CAGAGTTTGAGGTTGTCGAAAGT 59.128 43.478 0.00 0.00 29.69 2.66
220 221 3.871594 ACAGAGTTTGAGGTTGTCGAAAG 59.128 43.478 0.00 0.00 29.69 2.62
221 222 3.869065 ACAGAGTTTGAGGTTGTCGAAA 58.131 40.909 0.00 0.00 29.69 3.46
222 223 3.536956 ACAGAGTTTGAGGTTGTCGAA 57.463 42.857 0.00 0.00 0.00 3.71
223 224 3.118920 TCAACAGAGTTTGAGGTTGTCGA 60.119 43.478 0.00 0.00 40.96 4.20
224 225 3.194861 TCAACAGAGTTTGAGGTTGTCG 58.805 45.455 0.00 0.00 40.96 4.35
225 226 4.555511 GCATCAACAGAGTTTGAGGTTGTC 60.556 45.833 0.00 0.00 39.07 3.18
226 227 3.316308 GCATCAACAGAGTTTGAGGTTGT 59.684 43.478 0.00 0.00 39.07 3.32
227 228 3.607775 CGCATCAACAGAGTTTGAGGTTG 60.608 47.826 0.00 0.00 39.07 3.77
228 229 2.549754 CGCATCAACAGAGTTTGAGGTT 59.450 45.455 0.18 0.00 39.07 3.50
229 230 2.146342 CGCATCAACAGAGTTTGAGGT 58.854 47.619 0.18 0.00 39.07 3.85
230 231 1.135859 GCGCATCAACAGAGTTTGAGG 60.136 52.381 0.30 0.00 38.87 3.86
231 232 1.135859 GGCGCATCAACAGAGTTTGAG 60.136 52.381 10.83 0.00 38.87 3.02
232 233 0.874390 GGCGCATCAACAGAGTTTGA 59.126 50.000 10.83 0.00 39.79 2.69
233 234 0.592637 TGGCGCATCAACAGAGTTTG 59.407 50.000 10.83 0.00 0.00 2.93
234 235 0.593128 GTGGCGCATCAACAGAGTTT 59.407 50.000 10.83 0.00 0.00 2.66
235 236 0.250467 AGTGGCGCATCAACAGAGTT 60.250 50.000 10.83 0.00 0.00 3.01
236 237 0.608130 TAGTGGCGCATCAACAGAGT 59.392 50.000 10.83 0.00 0.00 3.24
237 238 1.725641 TTAGTGGCGCATCAACAGAG 58.274 50.000 10.83 0.00 0.00 3.35
238 239 2.177394 TTTAGTGGCGCATCAACAGA 57.823 45.000 10.83 0.00 0.00 3.41
239 240 2.987413 TTTTAGTGGCGCATCAACAG 57.013 45.000 10.83 0.00 0.00 3.16
240 241 3.573598 CATTTTTAGTGGCGCATCAACA 58.426 40.909 10.83 0.00 0.00 3.33
241 242 2.923020 CCATTTTTAGTGGCGCATCAAC 59.077 45.455 10.83 1.14 0.00 3.18
242 243 3.229276 CCATTTTTAGTGGCGCATCAA 57.771 42.857 10.83 0.00 0.00 2.57
243 244 2.937469 CCATTTTTAGTGGCGCATCA 57.063 45.000 10.83 0.00 0.00 3.07
250 251 3.855689 CCACAGAGCCATTTTTAGTGG 57.144 47.619 0.00 0.00 39.04 4.00
251 252 4.037923 ACAACCACAGAGCCATTTTTAGTG 59.962 41.667 0.00 0.00 0.00 2.74
252 253 4.215109 ACAACCACAGAGCCATTTTTAGT 58.785 39.130 0.00 0.00 0.00 2.24
253 254 4.853924 ACAACCACAGAGCCATTTTTAG 57.146 40.909 0.00 0.00 0.00 1.85
254 255 5.105146 ACAAACAACCACAGAGCCATTTTTA 60.105 36.000 0.00 0.00 0.00 1.52
255 256 4.190772 CAAACAACCACAGAGCCATTTTT 58.809 39.130 0.00 0.00 0.00 1.94
256 257 3.197549 ACAAACAACCACAGAGCCATTTT 59.802 39.130 0.00 0.00 0.00 1.82
257 258 2.765699 ACAAACAACCACAGAGCCATTT 59.234 40.909 0.00 0.00 0.00 2.32
258 259 2.101249 CACAAACAACCACAGAGCCATT 59.899 45.455 0.00 0.00 0.00 3.16
259 260 1.682854 CACAAACAACCACAGAGCCAT 59.317 47.619 0.00 0.00 0.00 4.40
260 261 1.102154 CACAAACAACCACAGAGCCA 58.898 50.000 0.00 0.00 0.00 4.75
261 262 1.102978 ACACAAACAACCACAGAGCC 58.897 50.000 0.00 0.00 0.00 4.70
262 263 2.939460 AACACAAACAACCACAGAGC 57.061 45.000 0.00 0.00 0.00 4.09
263 264 4.260212 CGACTAACACAAACAACCACAGAG 60.260 45.833 0.00 0.00 0.00 3.35
264 265 3.619483 CGACTAACACAAACAACCACAGA 59.381 43.478 0.00 0.00 0.00 3.41
265 266 3.242608 CCGACTAACACAAACAACCACAG 60.243 47.826 0.00 0.00 0.00 3.66
266 267 2.678836 CCGACTAACACAAACAACCACA 59.321 45.455 0.00 0.00 0.00 4.17
267 268 2.032426 CCCGACTAACACAAACAACCAC 59.968 50.000 0.00 0.00 0.00 4.16
268 269 2.093075 TCCCGACTAACACAAACAACCA 60.093 45.455 0.00 0.00 0.00 3.67
269 270 2.563702 TCCCGACTAACACAAACAACC 58.436 47.619 0.00 0.00 0.00 3.77
270 271 4.035909 ACATTCCCGACTAACACAAACAAC 59.964 41.667 0.00 0.00 0.00 3.32
271 272 4.200874 ACATTCCCGACTAACACAAACAA 58.799 39.130 0.00 0.00 0.00 2.83
272 273 3.811083 ACATTCCCGACTAACACAAACA 58.189 40.909 0.00 0.00 0.00 2.83
273 274 5.410439 ACATACATTCCCGACTAACACAAAC 59.590 40.000 0.00 0.00 0.00 2.93
274 275 5.410132 CACATACATTCCCGACTAACACAAA 59.590 40.000 0.00 0.00 0.00 2.83
275 276 4.932799 CACATACATTCCCGACTAACACAA 59.067 41.667 0.00 0.00 0.00 3.33
276 277 4.221041 TCACATACATTCCCGACTAACACA 59.779 41.667 0.00 0.00 0.00 3.72
277 278 4.751060 TCACATACATTCCCGACTAACAC 58.249 43.478 0.00 0.00 0.00 3.32
278 279 5.356426 CATCACATACATTCCCGACTAACA 58.644 41.667 0.00 0.00 0.00 2.41
279 280 4.211374 GCATCACATACATTCCCGACTAAC 59.789 45.833 0.00 0.00 0.00 2.34
280 281 4.141824 TGCATCACATACATTCCCGACTAA 60.142 41.667 0.00 0.00 0.00 2.24
281 282 3.386402 TGCATCACATACATTCCCGACTA 59.614 43.478 0.00 0.00 0.00 2.59
282 283 2.170397 TGCATCACATACATTCCCGACT 59.830 45.455 0.00 0.00 0.00 4.18
283 284 2.287915 GTGCATCACATACATTCCCGAC 59.712 50.000 0.00 0.00 34.08 4.79
284 285 2.560504 GTGCATCACATACATTCCCGA 58.439 47.619 0.00 0.00 34.08 5.14
285 286 1.603802 GGTGCATCACATACATTCCCG 59.396 52.381 0.00 0.00 35.86 5.14
286 287 1.603802 CGGTGCATCACATACATTCCC 59.396 52.381 0.00 0.00 35.86 3.97
287 288 1.603802 CCGGTGCATCACATACATTCC 59.396 52.381 0.00 0.00 35.86 3.01
288 289 1.603802 CCCGGTGCATCACATACATTC 59.396 52.381 0.00 0.00 35.86 2.67
289 290 1.211703 TCCCGGTGCATCACATACATT 59.788 47.619 0.00 0.00 35.86 2.71
290 291 0.836606 TCCCGGTGCATCACATACAT 59.163 50.000 0.00 0.00 35.86 2.29
291 292 0.107897 GTCCCGGTGCATCACATACA 60.108 55.000 0.00 0.00 35.86 2.29
292 293 0.107897 TGTCCCGGTGCATCACATAC 60.108 55.000 0.00 0.00 35.86 2.39
293 294 0.615850 TTGTCCCGGTGCATCACATA 59.384 50.000 0.00 0.00 35.86 2.29
294 295 0.034186 ATTGTCCCGGTGCATCACAT 60.034 50.000 0.00 0.00 35.86 3.21
295 296 0.251121 AATTGTCCCGGTGCATCACA 60.251 50.000 0.00 0.00 35.86 3.58
296 297 1.670811 CTAATTGTCCCGGTGCATCAC 59.329 52.381 0.00 0.00 0.00 3.06
297 298 1.280710 ACTAATTGTCCCGGTGCATCA 59.719 47.619 0.00 0.00 0.00 3.07
298 299 1.670811 CACTAATTGTCCCGGTGCATC 59.329 52.381 0.00 0.00 0.00 3.91
299 300 1.004277 ACACTAATTGTCCCGGTGCAT 59.996 47.619 0.00 0.00 29.79 3.96
300 301 0.398696 ACACTAATTGTCCCGGTGCA 59.601 50.000 0.00 0.00 29.79 4.57
301 302 1.530323 AACACTAATTGTCCCGGTGC 58.470 50.000 0.00 0.00 37.51 5.01
302 303 3.004862 GGTAACACTAATTGTCCCGGTG 58.995 50.000 0.00 0.00 37.51 4.94
303 304 2.354003 CGGTAACACTAATTGTCCCGGT 60.354 50.000 0.00 0.00 43.77 5.28
304 305 2.273557 CGGTAACACTAATTGTCCCGG 58.726 52.381 0.00 0.00 43.77 5.73
305 306 2.273557 CCGGTAACACTAATTGTCCCG 58.726 52.381 0.00 7.95 45.61 5.14
306 307 3.264947 GACCGGTAACACTAATTGTCCC 58.735 50.000 7.34 0.00 37.51 4.46
307 308 3.264947 GGACCGGTAACACTAATTGTCC 58.735 50.000 7.34 0.00 37.51 4.02
308 309 3.264947 GGGACCGGTAACACTAATTGTC 58.735 50.000 7.34 0.00 37.51 3.18
309 310 2.026915 GGGGACCGGTAACACTAATTGT 60.027 50.000 7.34 0.00 40.86 2.71
310 311 2.635714 GGGGACCGGTAACACTAATTG 58.364 52.381 7.34 0.00 40.86 2.32
323 324 8.321373 CATTTTAAAATGTGTAATGGGGGACCG 61.321 40.741 26.14 1.75 46.29 4.79
324 325 6.821160 CATTTTAAAATGTGTAATGGGGGACC 59.179 38.462 26.14 0.00 44.93 4.46
325 326 7.841915 CATTTTAAAATGTGTAATGGGGGAC 57.158 36.000 26.14 0.00 40.61 4.46
370 371 6.567959 TCATGTTGTGTCAATGCACTAAAAA 58.432 32.000 0.00 0.00 39.89 1.94
371 372 6.141560 TCATGTTGTGTCAATGCACTAAAA 57.858 33.333 0.00 0.15 39.89 1.52
372 373 5.764487 TCATGTTGTGTCAATGCACTAAA 57.236 34.783 0.00 0.00 39.89 1.85
373 374 5.764487 TTCATGTTGTGTCAATGCACTAA 57.236 34.783 0.00 1.24 39.89 2.24
374 375 5.241285 ACATTCATGTTGTGTCAATGCACTA 59.759 36.000 0.00 0.20 37.90 2.74
375 376 4.038282 ACATTCATGTTGTGTCAATGCACT 59.962 37.500 0.00 0.00 37.90 4.40
376 377 4.300803 ACATTCATGTTGTGTCAATGCAC 58.699 39.130 0.00 1.80 37.90 4.57
377 378 4.587584 ACATTCATGTTGTGTCAATGCA 57.412 36.364 0.00 0.00 37.90 3.96
378 379 6.094719 ACATACATTCATGTTGTGTCAATGC 58.905 36.000 12.38 0.00 41.97 3.56
389 390 6.631971 TTGTGTGACAACATACATTCATGT 57.368 33.333 0.00 0.00 44.83 3.21
390 391 8.523523 AATTTGTGTGACAACATACATTCATG 57.476 30.769 0.00 0.00 44.83 3.07
415 416 9.790433 CGAGCAATTTTTCGAATTTTGATTTAA 57.210 25.926 15.39 0.00 39.06 1.52
416 417 9.186323 TCGAGCAATTTTTCGAATTTTGATTTA 57.814 25.926 15.39 3.53 42.27 1.40
417 418 8.071122 TCGAGCAATTTTTCGAATTTTGATTT 57.929 26.923 15.39 4.36 42.27 2.17
418 419 7.636259 TCGAGCAATTTTTCGAATTTTGATT 57.364 28.000 15.39 6.14 42.27 2.57
467 468 9.758651 AGCGTAACTTGTATCATGTATTATTCA 57.241 29.630 0.00 0.00 0.00 2.57
470 471 9.758651 TGAAGCGTAACTTGTATCATGTATTAT 57.241 29.630 0.00 0.00 39.29 1.28
471 472 9.589111 TTGAAGCGTAACTTGTATCATGTATTA 57.411 29.630 0.00 0.00 39.29 0.98
472 473 8.487313 TTGAAGCGTAACTTGTATCATGTATT 57.513 30.769 0.00 0.00 39.29 1.89
473 474 8.662781 ATTGAAGCGTAACTTGTATCATGTAT 57.337 30.769 0.00 0.00 39.29 2.29
474 475 8.487313 AATTGAAGCGTAACTTGTATCATGTA 57.513 30.769 0.00 0.00 39.29 2.29
475 476 6.985188 ATTGAAGCGTAACTTGTATCATGT 57.015 33.333 0.00 0.00 39.29 3.21
476 477 7.637519 CAGAATTGAAGCGTAACTTGTATCATG 59.362 37.037 0.00 0.00 39.29 3.07
477 478 7.201644 CCAGAATTGAAGCGTAACTTGTATCAT 60.202 37.037 0.00 0.00 39.29 2.45
478 479 6.092122 CCAGAATTGAAGCGTAACTTGTATCA 59.908 38.462 0.00 0.00 39.29 2.15
479 480 6.478588 CCAGAATTGAAGCGTAACTTGTATC 58.521 40.000 0.00 0.00 39.29 2.24
480 481 5.163754 GCCAGAATTGAAGCGTAACTTGTAT 60.164 40.000 0.00 0.00 39.29 2.29
481 482 4.153475 GCCAGAATTGAAGCGTAACTTGTA 59.847 41.667 0.00 0.00 39.29 2.41
482 483 3.058224 GCCAGAATTGAAGCGTAACTTGT 60.058 43.478 0.00 0.00 39.29 3.16
483 484 3.492313 GCCAGAATTGAAGCGTAACTTG 58.508 45.455 0.00 0.00 39.29 3.16
484 485 2.488153 GGCCAGAATTGAAGCGTAACTT 59.512 45.455 0.00 0.00 42.98 2.66
485 486 2.084546 GGCCAGAATTGAAGCGTAACT 58.915 47.619 0.00 0.00 0.00 2.24
486 487 2.084546 AGGCCAGAATTGAAGCGTAAC 58.915 47.619 5.01 0.00 0.00 2.50
487 488 2.489938 AGGCCAGAATTGAAGCGTAA 57.510 45.000 5.01 0.00 0.00 3.18
488 489 3.838244 ATAGGCCAGAATTGAAGCGTA 57.162 42.857 5.01 0.00 0.00 4.42
489 490 2.717639 ATAGGCCAGAATTGAAGCGT 57.282 45.000 5.01 0.00 0.00 5.07
490 491 4.816385 TCTTAATAGGCCAGAATTGAAGCG 59.184 41.667 5.01 0.00 0.00 4.68
491 492 5.590259 TGTCTTAATAGGCCAGAATTGAAGC 59.410 40.000 5.01 4.70 0.00 3.86
492 493 7.814264 ATGTCTTAATAGGCCAGAATTGAAG 57.186 36.000 5.01 6.87 0.00 3.02
493 494 9.693739 TTAATGTCTTAATAGGCCAGAATTGAA 57.306 29.630 5.01 0.00 0.00 2.69
494 495 9.866655 ATTAATGTCTTAATAGGCCAGAATTGA 57.133 29.630 5.01 0.00 36.10 2.57
495 496 9.903682 CATTAATGTCTTAATAGGCCAGAATTG 57.096 33.333 5.01 0.00 35.77 2.32
496 497 9.646522 ACATTAATGTCTTAATAGGCCAGAATT 57.353 29.630 15.47 4.24 35.77 2.17
536 537 5.356882 TCGAAACATTGCTCGAGATTTTT 57.643 34.783 18.75 7.27 39.07 1.94
537 538 5.356882 TTCGAAACATTGCTCGAGATTTT 57.643 34.783 18.75 6.73 44.25 1.82
538 539 5.551760 ATTCGAAACATTGCTCGAGATTT 57.448 34.783 18.75 7.62 44.25 2.17
539 540 5.551760 AATTCGAAACATTGCTCGAGATT 57.448 34.783 18.75 0.00 44.25 2.40
540 541 5.551760 AAATTCGAAACATTGCTCGAGAT 57.448 34.783 18.75 0.00 44.25 2.75
541 542 5.049749 TCAAAATTCGAAACATTGCTCGAGA 60.050 36.000 18.75 0.00 44.25 4.04
542 543 5.146460 TCAAAATTCGAAACATTGCTCGAG 58.854 37.500 8.45 8.45 44.25 4.04
543 544 5.102020 TCAAAATTCGAAACATTGCTCGA 57.898 34.783 0.00 7.21 42.05 4.04
544 545 5.997732 ATCAAAATTCGAAACATTGCTCG 57.002 34.783 0.00 3.07 36.39 5.03
545 546 9.731519 CTAAAATCAAAATTCGAAACATTGCTC 57.268 29.630 0.00 0.00 0.00 4.26
546 547 9.260002 ACTAAAATCAAAATTCGAAACATTGCT 57.740 25.926 0.00 0.00 0.00 3.91
547 548 9.862585 AACTAAAATCAAAATTCGAAACATTGC 57.137 25.926 0.00 0.00 0.00 3.56
563 564 9.583530 CGTACGTTGTCATAAAAACTAAAATCA 57.416 29.630 7.22 0.00 0.00 2.57
564 565 9.584839 ACGTACGTTGTCATAAAAACTAAAATC 57.415 29.630 16.72 0.00 0.00 2.17
565 566 9.934190 AACGTACGTTGTCATAAAAACTAAAAT 57.066 25.926 31.29 1.26 36.91 1.82
582 583 2.724349 GACACTCTGTCAACGTACGTT 58.276 47.619 27.15 27.15 46.22 3.99
583 584 2.396160 GACACTCTGTCAACGTACGT 57.604 50.000 16.72 16.72 46.22 3.57
628 629 8.998377 GGACCTTGTTGCACATTTAAAATAATT 58.002 29.630 0.00 0.00 0.00 1.40
629 630 7.330700 CGGACCTTGTTGCACATTTAAAATAAT 59.669 33.333 0.00 0.00 0.00 1.28
630 631 6.642950 CGGACCTTGTTGCACATTTAAAATAA 59.357 34.615 0.00 0.00 0.00 1.40
631 632 6.153067 CGGACCTTGTTGCACATTTAAAATA 58.847 36.000 0.00 0.00 0.00 1.40
632 633 4.987912 CGGACCTTGTTGCACATTTAAAAT 59.012 37.500 0.00 0.00 0.00 1.82
633 634 4.363999 CGGACCTTGTTGCACATTTAAAA 58.636 39.130 0.00 0.00 0.00 1.52
634 635 3.243569 CCGGACCTTGTTGCACATTTAAA 60.244 43.478 0.00 0.00 0.00 1.52
635 636 2.294791 CCGGACCTTGTTGCACATTTAA 59.705 45.455 0.00 0.00 0.00 1.52
636 637 1.883275 CCGGACCTTGTTGCACATTTA 59.117 47.619 0.00 0.00 0.00 1.40
637 638 0.673437 CCGGACCTTGTTGCACATTT 59.327 50.000 0.00 0.00 0.00 2.32
638 639 0.467290 ACCGGACCTTGTTGCACATT 60.467 50.000 9.46 0.00 0.00 2.71
639 640 1.150536 ACCGGACCTTGTTGCACAT 59.849 52.632 9.46 0.00 0.00 3.21
640 641 1.821759 CACCGGACCTTGTTGCACA 60.822 57.895 9.46 0.00 0.00 4.57
641 642 3.030652 CACCGGACCTTGTTGCAC 58.969 61.111 9.46 0.00 0.00 4.57
642 643 2.904866 GCACCGGACCTTGTTGCA 60.905 61.111 9.46 0.00 0.00 4.08
643 644 2.904866 TGCACCGGACCTTGTTGC 60.905 61.111 9.46 6.16 0.00 4.17
644 645 2.551912 GGTGCACCGGACCTTGTTG 61.552 63.158 22.49 0.00 0.00 3.33
645 646 2.203294 GGTGCACCGGACCTTGTT 60.203 61.111 22.49 0.00 0.00 2.83
655 656 0.748005 ATTGATGCTACCGGTGCACC 60.748 55.000 26.78 26.78 43.59 5.01
656 657 1.094785 AATTGATGCTACCGGTGCAC 58.905 50.000 26.70 20.94 43.59 4.57
657 658 1.093972 CAATTGATGCTACCGGTGCA 58.906 50.000 26.46 26.46 44.95 4.57
658 659 3.924238 CAATTGATGCTACCGGTGC 57.076 52.632 19.93 19.04 0.00 5.01
668 669 2.349672 TGCACCGGGGCAATTGATG 61.350 57.895 33.52 3.17 41.65 3.07
669 670 2.037049 TGCACCGGGGCAATTGAT 59.963 55.556 33.52 0.00 41.65 2.57
670 671 2.988684 GTGCACCGGGGCAATTGA 60.989 61.111 37.35 7.46 46.93 2.57
671 672 4.067913 GGTGCACCGGGGCAATTG 62.068 66.667 37.35 8.30 46.93 2.32
672 673 4.612279 TGGTGCACCGGGGCAATT 62.612 61.111 37.35 0.00 46.93 2.32
676 677 3.792736 TATCTGGTGCACCGGGGC 61.793 66.667 38.20 25.59 42.72 5.80
677 678 2.189521 GTATCTGGTGCACCGGGG 59.810 66.667 38.20 25.98 42.72 5.73
678 679 2.202878 CGTATCTGGTGCACCGGG 60.203 66.667 38.20 28.28 42.72 5.73
679 680 1.079405 AACGTATCTGGTGCACCGG 60.079 57.895 35.06 35.06 43.86 5.28
680 681 1.082117 GGAACGTATCTGGTGCACCG 61.082 60.000 30.07 23.48 39.43 4.94
681 682 0.743345 GGGAACGTATCTGGTGCACC 60.743 60.000 29.67 29.67 0.00 5.01
682 683 0.249398 AGGGAACGTATCTGGTGCAC 59.751 55.000 8.80 8.80 0.00 4.57
683 684 0.249120 CAGGGAACGTATCTGGTGCA 59.751 55.000 0.00 0.00 0.00 4.57
684 685 0.249398 ACAGGGAACGTATCTGGTGC 59.751 55.000 14.38 0.00 33.19 5.01
685 686 1.275291 ACACAGGGAACGTATCTGGTG 59.725 52.381 14.38 11.19 33.19 4.17
686 687 1.640917 ACACAGGGAACGTATCTGGT 58.359 50.000 14.38 8.41 33.19 4.00
687 688 2.762535 AACACAGGGAACGTATCTGG 57.237 50.000 14.38 7.96 33.19 3.86
688 689 4.713824 TCTAACACAGGGAACGTATCTG 57.286 45.455 10.04 10.04 34.91 2.90
689 690 5.202004 AGATCTAACACAGGGAACGTATCT 58.798 41.667 0.00 0.00 0.00 1.98
690 691 5.507650 GGAGATCTAACACAGGGAACGTATC 60.508 48.000 0.00 0.00 0.00 2.24
691 692 4.341520 GGAGATCTAACACAGGGAACGTAT 59.658 45.833 0.00 0.00 0.00 3.06
692 693 3.698040 GGAGATCTAACACAGGGAACGTA 59.302 47.826 0.00 0.00 0.00 3.57
693 694 2.496470 GGAGATCTAACACAGGGAACGT 59.504 50.000 0.00 0.00 0.00 3.99
694 695 2.159085 GGGAGATCTAACACAGGGAACG 60.159 54.545 0.00 0.00 0.00 3.95
695 696 3.108376 AGGGAGATCTAACACAGGGAAC 58.892 50.000 0.00 0.00 0.00 3.62
696 697 3.107601 CAGGGAGATCTAACACAGGGAA 58.892 50.000 0.00 0.00 0.00 3.97
697 698 2.044492 ACAGGGAGATCTAACACAGGGA 59.956 50.000 0.00 0.00 0.00 4.20
698 699 2.472029 ACAGGGAGATCTAACACAGGG 58.528 52.381 0.00 0.00 0.00 4.45
699 700 4.020218 TGAAACAGGGAGATCTAACACAGG 60.020 45.833 0.00 0.00 0.00 4.00
700 701 4.932200 GTGAAACAGGGAGATCTAACACAG 59.068 45.833 0.00 0.00 36.32 3.66
705 706 5.825593 AACAGTGAAACAGGGAGATCTAA 57.174 39.130 0.00 0.00 41.43 2.10
709 710 4.103153 TGAGAAACAGTGAAACAGGGAGAT 59.897 41.667 0.00 0.00 41.43 2.75
712 713 3.924114 TGAGAAACAGTGAAACAGGGA 57.076 42.857 0.00 0.00 41.43 4.20
721 722 4.516698 ACAGCTTACCATTGAGAAACAGTG 59.483 41.667 0.00 0.00 36.25 3.66
756 758 6.183360 GGAGCATCTGATTCTCTTTTCTTTCC 60.183 42.308 15.22 0.00 33.73 3.13
839 844 1.663388 TGTTCGGTGCAGCACTACG 60.663 57.895 24.75 19.85 34.40 3.51
899 940 0.474660 ACCAAGTCAAGCCTCCTCCT 60.475 55.000 0.00 0.00 0.00 3.69
957 998 1.096386 CCTCCTCTCGGTAGACGGTG 61.096 65.000 0.00 0.00 44.45 4.94
974 1015 2.043450 CTCACGGCTCCTCCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
975 1016 3.151022 CCTCACGGCTCCTCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
976 1017 2.043852 TCCTCACGGCTCCTCCTC 60.044 66.667 0.00 0.00 0.00 3.71
977 1018 2.363147 GTCCTCACGGCTCCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
978 1019 2.363147 AGTCCTCACGGCTCCTCC 60.363 66.667 0.00 0.00 0.00 4.30
979 1020 1.662438 CTCAGTCCTCACGGCTCCTC 61.662 65.000 0.00 0.00 0.00 3.71
1259 1318 6.353323 TCCATGGAGACGAGATCTAGATATC 58.647 44.000 11.44 15.98 38.00 1.63
1301 1367 0.098905 GATACGAGACGCAGCTGTCA 59.901 55.000 16.64 0.00 41.41 3.58
1304 1370 1.655654 CCGATACGAGACGCAGCTG 60.656 63.158 10.11 10.11 0.00 4.24
1390 1521 8.620116 TCATATACAAGCTTGCTGCAATAATA 57.380 30.769 26.27 8.14 45.94 0.98
1595 1803 6.870439 GGCTGCAGATGTTTTAAGATCTTTTT 59.130 34.615 20.43 0.00 36.96 1.94
1596 1804 6.015180 TGGCTGCAGATGTTTTAAGATCTTTT 60.015 34.615 20.43 0.00 36.96 2.27
1597 1805 5.477984 TGGCTGCAGATGTTTTAAGATCTTT 59.522 36.000 20.43 0.00 36.96 2.52
1598 1806 5.012239 TGGCTGCAGATGTTTTAAGATCTT 58.988 37.500 20.43 13.56 36.96 2.40
1599 1807 4.592942 TGGCTGCAGATGTTTTAAGATCT 58.407 39.130 20.43 0.00 39.36 2.75
1600 1808 4.970662 TGGCTGCAGATGTTTTAAGATC 57.029 40.909 20.43 0.00 0.00 2.75
1601 1809 4.098960 CCATGGCTGCAGATGTTTTAAGAT 59.901 41.667 20.43 0.00 0.00 2.40
1602 1810 3.444742 CCATGGCTGCAGATGTTTTAAGA 59.555 43.478 20.43 0.00 0.00 2.10
1603 1811 3.444742 TCCATGGCTGCAGATGTTTTAAG 59.555 43.478 20.43 0.00 0.00 1.85
1604 1812 3.429492 TCCATGGCTGCAGATGTTTTAA 58.571 40.909 20.43 0.00 0.00 1.52
1605 1813 3.084536 TCCATGGCTGCAGATGTTTTA 57.915 42.857 20.43 0.00 0.00 1.52
1606 1814 1.927487 TCCATGGCTGCAGATGTTTT 58.073 45.000 20.43 0.00 0.00 2.43
1607 1815 2.154567 ATCCATGGCTGCAGATGTTT 57.845 45.000 20.43 0.00 0.00 2.83
1608 1816 3.074094 AGATATCCATGGCTGCAGATGTT 59.926 43.478 20.43 5.71 0.00 2.71
1609 1817 2.643304 AGATATCCATGGCTGCAGATGT 59.357 45.455 20.43 0.00 0.00 3.06
1610 1818 3.271729 GAGATATCCATGGCTGCAGATG 58.728 50.000 20.43 13.19 0.00 2.90
1611 1819 2.239150 GGAGATATCCATGGCTGCAGAT 59.761 50.000 20.43 3.21 0.00 2.90
1612 1820 1.627329 GGAGATATCCATGGCTGCAGA 59.373 52.381 20.43 0.00 0.00 4.26
1613 1821 1.339824 GGGAGATATCCATGGCTGCAG 60.340 57.143 10.11 10.11 0.00 4.41
1614 1822 0.694771 GGGAGATATCCATGGCTGCA 59.305 55.000 6.96 0.00 0.00 4.41
1618 1826 1.661463 TCTGGGGAGATATCCATGGC 58.339 55.000 6.96 0.00 31.95 4.40
1739 2017 3.058639 GTCAACTTCCTGAATGTGCAGTC 60.059 47.826 0.00 0.00 34.06 3.51
1771 4721 7.636579 TGCTAATTAATGATGGGATATCTGCT 58.363 34.615 2.05 0.00 0.00 4.24
1821 4771 1.740025 CGCATCCTTGTCTTTTCCCTC 59.260 52.381 0.00 0.00 0.00 4.30
1822 4772 1.351017 TCGCATCCTTGTCTTTTCCCT 59.649 47.619 0.00 0.00 0.00 4.20
1826 4776 3.441572 CCTCATTCGCATCCTTGTCTTTT 59.558 43.478 0.00 0.00 0.00 2.27
1861 4812 9.609346 GCTCTACAGTTTATTTCCCTTATTGTA 57.391 33.333 0.00 0.00 0.00 2.41
1866 4817 6.290294 ACGCTCTACAGTTTATTTCCCTTA 57.710 37.500 0.00 0.00 0.00 2.69
1883 4834 6.194796 TGTACCGTAGTAATAAAACGCTCT 57.805 37.500 0.00 0.00 35.36 4.09
1913 4866 1.153823 CTTAGGTGACCCACGCTCG 60.154 63.158 0.00 0.00 34.83 5.03
1922 4875 2.412089 CGCTAGTTTGTGCTTAGGTGAC 59.588 50.000 0.00 0.00 0.00 3.67
1924 4877 2.683968 TCGCTAGTTTGTGCTTAGGTG 58.316 47.619 0.00 0.00 0.00 4.00
1925 4878 3.326747 CTTCGCTAGTTTGTGCTTAGGT 58.673 45.455 0.00 0.00 0.00 3.08
1926 4879 2.094417 GCTTCGCTAGTTTGTGCTTAGG 59.906 50.000 0.00 0.00 0.00 2.69
1927 4880 2.996621 AGCTTCGCTAGTTTGTGCTTAG 59.003 45.455 0.00 0.00 36.99 2.18
1928 4881 3.040147 AGCTTCGCTAGTTTGTGCTTA 57.960 42.857 0.00 0.00 36.99 3.09
2127 5080 3.075998 CAGCATCACGACGAGCAC 58.924 61.111 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.