Multiple sequence alignment - TraesCS5D01G092400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G092400 chr5D 100.000 1507 0 0 1659 3165 100988722 100990228 0.000000e+00 2784.0
1 TraesCS5D01G092400 chr5D 100.000 1112 0 0 1 1112 100987064 100988175 0.000000e+00 2054.0
2 TraesCS5D01G092400 chr5D 96.970 330 6 3 786 1112 498267538 498267866 4.610000e-153 551.0
3 TraesCS5D01G092400 chr5D 88.295 393 28 9 395 787 378799167 378799541 3.720000e-124 455.0
4 TraesCS5D01G092400 chr3D 99.072 1508 13 1 1659 3165 134599270 134597763 0.000000e+00 2706.0
5 TraesCS5D01G092400 chr3D 98.675 1510 16 4 1659 3165 535654985 535656493 0.000000e+00 2675.0
6 TraesCS5D01G092400 chr3D 98.607 1508 20 1 1659 3165 365841979 365840472 0.000000e+00 2667.0
7 TraesCS5D01G092400 chr3D 98.541 1508 21 1 1659 3165 593933869 593935376 0.000000e+00 2662.0
8 TraesCS5D01G092400 chr3D 97.281 331 5 3 786 1112 134599598 134599268 2.760000e-155 558.0
9 TraesCS5D01G092400 chr3D 96.073 331 9 3 786 1112 365842307 365841977 1.290000e-148 536.0
10 TraesCS5D01G092400 chr3D 95.796 333 9 4 785 1112 593933533 593933865 1.670000e-147 532.0
11 TraesCS5D01G092400 chr6D 99.005 1508 14 1 1659 3165 466182427 466183934 0.000000e+00 2700.0
12 TraesCS5D01G092400 chr6D 99.178 1459 11 1 1708 3165 47793110 47794568 0.000000e+00 2627.0
13 TraesCS5D01G092400 chr6D 96.735 245 4 3 872 1112 47792731 47792975 3.800000e-109 405.0
14 TraesCS5D01G092400 chr2D 98.277 1509 24 2 1659 3165 472192343 472190835 0.000000e+00 2641.0
15 TraesCS5D01G092400 chr2D 91.765 340 6 6 786 1112 472192671 472192341 1.340000e-123 453.0
16 TraesCS5D01G092400 chr2D 91.852 135 4 5 786 919 12974763 12974635 6.970000e-42 182.0
17 TraesCS5D01G092400 chr4B 96.948 1507 45 1 1659 3165 592155132 592153627 0.000000e+00 2527.0
18 TraesCS5D01G092400 chr4B 96.796 1498 47 1 1668 3165 592031412 592029916 0.000000e+00 2499.0
19 TraesCS5D01G092400 chr4B 94.036 788 45 2 1 787 330257803 330258589 0.000000e+00 1194.0
20 TraesCS5D01G092400 chr4B 89.306 346 16 4 785 1112 592032075 592031733 6.320000e-112 414.0
21 TraesCS5D01G092400 chr4B 92.143 280 10 6 827 1103 24341999 24341729 4.950000e-103 385.0
22 TraesCS5D01G092400 chr7B 94.093 474 27 1 314 787 685654741 685655213 0.000000e+00 719.0
23 TraesCS5D01G092400 chr7B 93.201 353 24 0 1 353 685654386 685654738 1.300000e-143 520.0
24 TraesCS5D01G092400 chr7B 89.112 349 14 8 784 1112 255252765 255252421 2.270000e-111 412.0
25 TraesCS5D01G092400 chr7B 87.931 290 17 10 826 1112 699546959 699546685 3.040000e-85 326.0
26 TraesCS5D01G092400 chr5A 93.266 297 20 0 491 787 1941222 1940926 3.750000e-119 438.0
27 TraesCS5D01G092400 chr7D 90.282 319 29 2 470 787 367023561 367023878 1.760000e-112 416.0
28 TraesCS5D01G092400 chr7D 95.492 244 1 3 872 1112 162134536 162134772 6.410000e-102 381.0
29 TraesCS5D01G092400 chr7D 95.102 245 1 3 872 1112 162135976 162136213 2.980000e-100 375.0
30 TraesCS5D01G092400 chr7D 90.909 187 17 0 3 189 367023334 367023520 5.240000e-63 252.0
31 TraesCS5D01G092400 chr1A 81.887 265 20 15 550 787 270573198 270572935 6.920000e-47 198.0
32 TraesCS5D01G092400 chr2A 81.579 266 19 8 550 787 267843918 267844181 3.220000e-45 193.0
33 TraesCS5D01G092400 chr3B 91.803 122 5 5 783 901 104276000 104276119 7.020000e-37 165.0
34 TraesCS5D01G092400 chr6A 85.000 60 7 2 635 694 265615340 265615397 3.410000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G092400 chr5D 100987064 100990228 3164 False 2419.0 2784 100.0000 1 3165 2 chr5D.!!$F3 3164
1 TraesCS5D01G092400 chr3D 535654985 535656493 1508 False 2675.0 2675 98.6750 1659 3165 1 chr3D.!!$F1 1506
2 TraesCS5D01G092400 chr3D 134597763 134599598 1835 True 1632.0 2706 98.1765 786 3165 2 chr3D.!!$R1 2379
3 TraesCS5D01G092400 chr3D 365840472 365842307 1835 True 1601.5 2667 97.3400 786 3165 2 chr3D.!!$R2 2379
4 TraesCS5D01G092400 chr3D 593933533 593935376 1843 False 1597.0 2662 97.1685 785 3165 2 chr3D.!!$F2 2380
5 TraesCS5D01G092400 chr6D 466182427 466183934 1507 False 2700.0 2700 99.0050 1659 3165 1 chr6D.!!$F1 1506
6 TraesCS5D01G092400 chr6D 47792731 47794568 1837 False 1516.0 2627 97.9565 872 3165 2 chr6D.!!$F2 2293
7 TraesCS5D01G092400 chr2D 472190835 472192671 1836 True 1547.0 2641 95.0210 786 3165 2 chr2D.!!$R2 2379
8 TraesCS5D01G092400 chr4B 592153627 592155132 1505 True 2527.0 2527 96.9480 1659 3165 1 chr4B.!!$R2 1506
9 TraesCS5D01G092400 chr4B 592029916 592032075 2159 True 1456.5 2499 93.0510 785 3165 2 chr4B.!!$R3 2380
10 TraesCS5D01G092400 chr4B 330257803 330258589 786 False 1194.0 1194 94.0360 1 787 1 chr4B.!!$F1 786
11 TraesCS5D01G092400 chr7B 685654386 685655213 827 False 619.5 719 93.6470 1 787 2 chr7B.!!$F1 786
12 TraesCS5D01G092400 chr7D 162134536 162136213 1677 False 378.0 381 95.2970 872 1112 2 chr7D.!!$F1 240
13 TraesCS5D01G092400 chr7D 367023334 367023878 544 False 334.0 416 90.5955 3 787 2 chr7D.!!$F2 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 527 0.033503 TGACCTGCTCGGGTATCTCA 60.034 55.0 0.0 0.0 40.06 3.27 F
583 626 0.033796 CCTGTCACCTTCCCATGCAT 60.034 55.0 0.0 0.0 0.00 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 2391 2.668550 GAACGGCGCTTTGTCCCT 60.669 61.111 6.9 0.0 0.00 4.20 R
2757 3659 2.693797 CAGAACAAGATGTGGTGTGC 57.306 50.000 0.0 0.0 30.36 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.108138 CCTCAACTCCACATCGACCC 60.108 60.000 0.00 0.00 0.00 4.46
88 89 1.897225 GCTCCTCTCCTCTGCTTGCA 61.897 60.000 0.00 0.00 0.00 4.08
104 105 2.437180 CATTGCCTCGGCTCTGCA 60.437 61.111 9.65 0.00 42.51 4.41
141 142 3.996621 ACCCCGACCTCCCCGTAA 61.997 66.667 0.00 0.00 0.00 3.18
215 216 1.525442 CTACCCCCAATCACCCGAC 59.475 63.158 0.00 0.00 0.00 4.79
345 388 7.340743 TGACCCTGTTCTTGTTCATCTTTAAAA 59.659 33.333 0.00 0.00 0.00 1.52
419 462 4.711399 CTGATGACTAGGATCCAATGCAA 58.289 43.478 15.82 0.00 0.00 4.08
450 493 5.475273 ACATTCAATCTGTTGTATGCTCG 57.525 39.130 7.41 0.00 43.11 5.03
451 494 4.937620 ACATTCAATCTGTTGTATGCTCGT 59.062 37.500 7.41 0.00 43.11 4.18
452 495 5.063944 ACATTCAATCTGTTGTATGCTCGTC 59.936 40.000 7.41 0.00 43.11 4.20
453 496 4.186856 TCAATCTGTTGTATGCTCGTCA 57.813 40.909 0.00 0.00 36.69 4.35
454 497 4.758688 TCAATCTGTTGTATGCTCGTCAT 58.241 39.130 0.00 0.00 36.69 3.06
455 498 4.805719 TCAATCTGTTGTATGCTCGTCATC 59.194 41.667 0.00 0.00 36.69 2.92
456 499 3.165058 TCTGTTGTATGCTCGTCATCC 57.835 47.619 0.00 0.00 36.63 3.51
457 500 2.159099 TCTGTTGTATGCTCGTCATCCC 60.159 50.000 0.00 0.00 36.63 3.85
458 501 1.831106 TGTTGTATGCTCGTCATCCCT 59.169 47.619 0.00 0.00 36.63 4.20
459 502 2.159099 TGTTGTATGCTCGTCATCCCTC 60.159 50.000 0.00 0.00 36.63 4.30
460 503 0.668535 TGTATGCTCGTCATCCCTCG 59.331 55.000 0.00 0.00 36.63 4.63
461 504 0.664767 GTATGCTCGTCATCCCTCGC 60.665 60.000 0.00 0.00 36.63 5.03
462 505 2.130073 TATGCTCGTCATCCCTCGCG 62.130 60.000 0.00 0.00 36.63 5.87
467 510 4.492160 GTCATCCCTCGCGCGTGA 62.492 66.667 31.12 22.98 0.00 4.35
468 511 4.492160 TCATCCCTCGCGCGTGAC 62.492 66.667 31.12 0.00 0.00 3.67
479 522 3.755628 GCGTGACCTGCTCGGGTA 61.756 66.667 0.00 0.00 40.06 3.69
480 523 3.077519 GCGTGACCTGCTCGGGTAT 62.078 63.158 0.00 0.00 40.06 2.73
481 524 1.065928 CGTGACCTGCTCGGGTATC 59.934 63.158 0.00 0.00 40.06 2.24
482 525 1.384989 CGTGACCTGCTCGGGTATCT 61.385 60.000 0.00 0.00 40.06 1.98
483 526 0.386113 GTGACCTGCTCGGGTATCTC 59.614 60.000 0.00 0.00 40.06 2.75
484 527 0.033503 TGACCTGCTCGGGTATCTCA 60.034 55.000 0.00 0.00 40.06 3.27
485 528 0.671251 GACCTGCTCGGGTATCTCAG 59.329 60.000 0.00 0.00 40.06 3.35
486 529 2.045280 CCTGCTCGGGTATCTCAGG 58.955 63.158 0.00 0.00 38.41 3.86
487 530 1.365633 CTGCTCGGGTATCTCAGGC 59.634 63.158 0.00 0.00 0.00 4.85
488 531 1.381191 TGCTCGGGTATCTCAGGCA 60.381 57.895 0.00 0.00 0.00 4.75
489 532 1.365633 GCTCGGGTATCTCAGGCAG 59.634 63.158 0.00 0.00 0.00 4.85
490 533 1.109920 GCTCGGGTATCTCAGGCAGA 61.110 60.000 0.00 0.00 34.78 4.26
491 534 0.671251 CTCGGGTATCTCAGGCAGAC 59.329 60.000 0.00 0.00 32.26 3.51
492 535 0.755698 TCGGGTATCTCAGGCAGACC 60.756 60.000 0.00 0.00 32.26 3.85
502 545 2.679716 GGCAGACCTTCCATGGCT 59.320 61.111 6.96 0.00 36.63 4.75
503 546 1.452833 GGCAGACCTTCCATGGCTC 60.453 63.158 6.96 0.00 36.63 4.70
504 547 1.452833 GCAGACCTTCCATGGCTCC 60.453 63.158 6.96 0.00 0.00 4.70
505 548 1.919600 GCAGACCTTCCATGGCTCCT 61.920 60.000 6.96 0.00 0.00 3.69
506 549 0.107312 CAGACCTTCCATGGCTCCTG 60.107 60.000 6.96 6.01 0.00 3.86
507 550 0.548682 AGACCTTCCATGGCTCCTGT 60.549 55.000 6.96 0.00 0.00 4.00
508 551 0.107459 GACCTTCCATGGCTCCTGTC 60.107 60.000 6.96 5.48 0.00 3.51
509 552 0.842030 ACCTTCCATGGCTCCTGTCA 60.842 55.000 6.96 0.00 0.00 3.58
510 553 0.549950 CCTTCCATGGCTCCTGTCAT 59.450 55.000 6.96 0.00 39.39 3.06
511 554 1.064166 CCTTCCATGGCTCCTGTCATT 60.064 52.381 6.96 0.00 36.19 2.57
512 555 2.022195 CTTCCATGGCTCCTGTCATTG 58.978 52.381 6.96 0.00 36.19 2.82
513 556 1.288188 TCCATGGCTCCTGTCATTGA 58.712 50.000 6.96 0.00 36.19 2.57
514 557 1.065199 TCCATGGCTCCTGTCATTGAC 60.065 52.381 6.96 9.93 36.19 3.18
515 558 1.386533 CATGGCTCCTGTCATTGACC 58.613 55.000 14.05 0.00 36.19 4.02
516 559 1.064906 CATGGCTCCTGTCATTGACCT 60.065 52.381 14.05 0.00 36.19 3.85
517 560 1.067295 TGGCTCCTGTCATTGACCTT 58.933 50.000 14.05 0.00 0.00 3.50
518 561 1.003580 TGGCTCCTGTCATTGACCTTC 59.996 52.381 14.05 0.00 0.00 3.46
519 562 1.363744 GCTCCTGTCATTGACCTTCG 58.636 55.000 14.05 2.29 0.00 3.79
520 563 1.363744 CTCCTGTCATTGACCTTCGC 58.636 55.000 14.05 0.00 0.00 4.70
521 564 0.036388 TCCTGTCATTGACCTTCGCC 60.036 55.000 14.05 0.00 0.00 5.54
522 565 1.026718 CCTGTCATTGACCTTCGCCC 61.027 60.000 14.05 0.00 0.00 6.13
523 566 1.361668 CTGTCATTGACCTTCGCCCG 61.362 60.000 14.05 0.00 0.00 6.13
524 567 1.079405 GTCATTGACCTTCGCCCGA 60.079 57.895 5.44 0.00 0.00 5.14
525 568 1.079405 TCATTGACCTTCGCCCGAC 60.079 57.895 0.00 0.00 0.00 4.79
526 569 2.125673 ATTGACCTTCGCCCGACG 60.126 61.111 0.00 0.00 45.62 5.12
527 570 2.939261 ATTGACCTTCGCCCGACGT 61.939 57.895 0.00 0.00 44.19 4.34
528 571 2.830704 ATTGACCTTCGCCCGACGTC 62.831 60.000 5.18 5.18 44.19 4.34
529 572 3.745803 GACCTTCGCCCGACGTCT 61.746 66.667 14.70 0.00 44.19 4.18
530 573 3.680338 GACCTTCGCCCGACGTCTC 62.680 68.421 14.70 1.68 44.19 3.36
531 574 3.441290 CCTTCGCCCGACGTCTCT 61.441 66.667 14.70 0.00 44.19 3.10
532 575 2.100603 CTTCGCCCGACGTCTCTC 59.899 66.667 14.70 0.94 44.19 3.20
533 576 2.670592 TTCGCCCGACGTCTCTCA 60.671 61.111 14.70 0.00 44.19 3.27
534 577 1.994507 CTTCGCCCGACGTCTCTCAT 61.995 60.000 14.70 0.00 44.19 2.90
535 578 1.592400 TTCGCCCGACGTCTCTCATT 61.592 55.000 14.70 0.00 44.19 2.57
536 579 1.874019 CGCCCGACGTCTCTCATTG 60.874 63.158 14.70 0.00 36.87 2.82
537 580 2.167861 GCCCGACGTCTCTCATTGC 61.168 63.158 14.70 1.86 0.00 3.56
538 581 1.513158 CCCGACGTCTCTCATTGCT 59.487 57.895 14.70 0.00 0.00 3.91
539 582 0.803768 CCCGACGTCTCTCATTGCTG 60.804 60.000 14.70 0.00 0.00 4.41
540 583 1.416813 CCGACGTCTCTCATTGCTGC 61.417 60.000 14.70 0.00 0.00 5.25
541 584 0.457509 CGACGTCTCTCATTGCTGCT 60.458 55.000 14.70 0.00 0.00 4.24
542 585 0.997932 GACGTCTCTCATTGCTGCTG 59.002 55.000 8.70 0.00 0.00 4.41
543 586 1.018226 ACGTCTCTCATTGCTGCTGC 61.018 55.000 8.89 8.89 40.20 5.25
552 595 4.854924 TGCTGCTGCACACGGTGT 62.855 61.111 14.93 8.21 45.31 4.16
553 596 4.017877 GCTGCTGCACACGGTGTC 62.018 66.667 11.54 7.23 39.41 3.67
554 597 2.280389 CTGCTGCACACGGTGTCT 60.280 61.111 11.54 0.00 35.75 3.41
555 598 2.588596 TGCTGCACACGGTGTCTG 60.589 61.111 11.54 11.04 35.75 3.51
556 599 2.588877 GCTGCACACGGTGTCTGT 60.589 61.111 11.54 0.00 35.75 3.41
557 600 2.180204 GCTGCACACGGTGTCTGTT 61.180 57.895 11.54 0.00 35.75 3.16
558 601 1.643292 CTGCACACGGTGTCTGTTG 59.357 57.895 11.54 0.80 35.75 3.33
559 602 1.078778 TGCACACGGTGTCTGTTGT 60.079 52.632 11.54 0.00 35.75 3.32
560 603 1.351707 GCACACGGTGTCTGTTGTG 59.648 57.895 11.54 0.00 35.75 3.33
561 604 1.366111 GCACACGGTGTCTGTTGTGT 61.366 55.000 11.54 0.00 45.79 3.72
562 605 1.083489 CACACGGTGTCTGTTGTGTT 58.917 50.000 11.54 0.00 42.53 3.32
563 606 1.062002 CACACGGTGTCTGTTGTGTTC 59.938 52.381 11.54 0.00 42.53 3.18
564 607 0.655733 CACGGTGTCTGTTGTGTTCC 59.344 55.000 0.00 0.00 0.00 3.62
565 608 0.463116 ACGGTGTCTGTTGTGTTCCC 60.463 55.000 0.00 0.00 0.00 3.97
566 609 0.179056 CGGTGTCTGTTGTGTTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
567 610 1.308998 GGTGTCTGTTGTGTTCCCTG 58.691 55.000 0.00 0.00 0.00 4.45
568 611 1.408266 GGTGTCTGTTGTGTTCCCTGT 60.408 52.381 0.00 0.00 0.00 4.00
569 612 1.940613 GTGTCTGTTGTGTTCCCTGTC 59.059 52.381 0.00 0.00 0.00 3.51
570 613 1.557371 TGTCTGTTGTGTTCCCTGTCA 59.443 47.619 0.00 0.00 0.00 3.58
571 614 1.940613 GTCTGTTGTGTTCCCTGTCAC 59.059 52.381 0.00 0.00 35.43 3.67
572 615 1.134220 TCTGTTGTGTTCCCTGTCACC 60.134 52.381 0.00 0.00 34.14 4.02
573 616 0.916086 TGTTGTGTTCCCTGTCACCT 59.084 50.000 0.00 0.00 34.14 4.00
574 617 1.283613 TGTTGTGTTCCCTGTCACCTT 59.716 47.619 0.00 0.00 34.14 3.50
575 618 1.947456 GTTGTGTTCCCTGTCACCTTC 59.053 52.381 0.00 0.00 34.14 3.46
576 619 0.472471 TGTGTTCCCTGTCACCTTCC 59.528 55.000 0.00 0.00 34.14 3.46
577 620 0.250770 GTGTTCCCTGTCACCTTCCC 60.251 60.000 0.00 0.00 0.00 3.97
578 621 0.696143 TGTTCCCTGTCACCTTCCCA 60.696 55.000 0.00 0.00 0.00 4.37
579 622 0.698818 GTTCCCTGTCACCTTCCCAT 59.301 55.000 0.00 0.00 0.00 4.00
580 623 0.698238 TTCCCTGTCACCTTCCCATG 59.302 55.000 0.00 0.00 0.00 3.66
581 624 1.379044 CCCTGTCACCTTCCCATGC 60.379 63.158 0.00 0.00 0.00 4.06
582 625 1.379916 CCTGTCACCTTCCCATGCA 59.620 57.895 0.00 0.00 0.00 3.96
583 626 0.033796 CCTGTCACCTTCCCATGCAT 60.034 55.000 0.00 0.00 0.00 3.96
584 627 1.100510 CTGTCACCTTCCCATGCATG 58.899 55.000 20.19 20.19 0.00 4.06
585 628 0.405198 TGTCACCTTCCCATGCATGT 59.595 50.000 24.58 2.51 0.00 3.21
586 629 1.098050 GTCACCTTCCCATGCATGTC 58.902 55.000 24.58 0.00 0.00 3.06
587 630 0.697658 TCACCTTCCCATGCATGTCA 59.302 50.000 24.58 8.28 0.00 3.58
588 631 0.813184 CACCTTCCCATGCATGTCAC 59.187 55.000 24.58 0.00 0.00 3.67
589 632 0.323725 ACCTTCCCATGCATGTCACC 60.324 55.000 24.58 0.00 0.00 4.02
590 633 1.378882 CCTTCCCATGCATGTCACCG 61.379 60.000 24.58 9.25 0.00 4.94
591 634 0.392863 CTTCCCATGCATGTCACCGA 60.393 55.000 24.58 9.30 0.00 4.69
592 635 0.392863 TTCCCATGCATGTCACCGAG 60.393 55.000 24.58 7.82 0.00 4.63
593 636 1.078214 CCCATGCATGTCACCGAGT 60.078 57.895 24.58 0.00 0.00 4.18
594 637 0.677731 CCCATGCATGTCACCGAGTT 60.678 55.000 24.58 0.00 0.00 3.01
595 638 0.448990 CCATGCATGTCACCGAGTTG 59.551 55.000 24.58 2.03 0.00 3.16
596 639 0.179181 CATGCATGTCACCGAGTTGC 60.179 55.000 18.91 0.00 0.00 4.17
597 640 0.321919 ATGCATGTCACCGAGTTGCT 60.322 50.000 0.00 0.00 34.47 3.91
598 641 1.229975 TGCATGTCACCGAGTTGCTG 61.230 55.000 0.00 0.00 34.47 4.41
599 642 1.499056 CATGTCACCGAGTTGCTGC 59.501 57.895 0.00 0.00 0.00 5.25
600 643 0.952497 CATGTCACCGAGTTGCTGCT 60.952 55.000 0.00 0.00 0.00 4.24
601 644 0.952497 ATGTCACCGAGTTGCTGCTG 60.952 55.000 0.00 0.00 0.00 4.41
602 645 2.031012 TCACCGAGTTGCTGCTGG 59.969 61.111 0.00 0.00 0.00 4.85
603 646 3.730761 CACCGAGTTGCTGCTGGC 61.731 66.667 0.00 0.00 42.22 4.85
604 647 3.946201 ACCGAGTTGCTGCTGGCT 61.946 61.111 0.00 0.00 42.39 4.75
605 648 2.670934 CCGAGTTGCTGCTGGCTT 60.671 61.111 0.00 0.00 42.39 4.35
606 649 2.263741 CCGAGTTGCTGCTGGCTTT 61.264 57.895 0.00 0.00 42.39 3.51
607 650 1.081641 CGAGTTGCTGCTGGCTTTG 60.082 57.895 0.00 0.00 42.39 2.77
608 651 1.288127 GAGTTGCTGCTGGCTTTGG 59.712 57.895 0.00 0.00 42.39 3.28
609 652 1.456331 AGTTGCTGCTGGCTTTGGT 60.456 52.632 0.00 0.00 42.39 3.67
610 653 1.044790 AGTTGCTGCTGGCTTTGGTT 61.045 50.000 0.00 0.00 42.39 3.67
611 654 0.877213 GTTGCTGCTGGCTTTGGTTG 60.877 55.000 0.00 0.00 42.39 3.77
612 655 1.329171 TTGCTGCTGGCTTTGGTTGT 61.329 50.000 0.00 0.00 42.39 3.32
613 656 1.329171 TGCTGCTGGCTTTGGTTGTT 61.329 50.000 0.00 0.00 42.39 2.83
614 657 0.877213 GCTGCTGGCTTTGGTTGTTG 60.877 55.000 0.00 0.00 38.06 3.33
615 658 0.461135 CTGCTGGCTTTGGTTGTTGT 59.539 50.000 0.00 0.00 0.00 3.32
616 659 0.901124 TGCTGGCTTTGGTTGTTGTT 59.099 45.000 0.00 0.00 0.00 2.83
617 660 2.100584 CTGCTGGCTTTGGTTGTTGTTA 59.899 45.455 0.00 0.00 0.00 2.41
618 661 2.497675 TGCTGGCTTTGGTTGTTGTTAA 59.502 40.909 0.00 0.00 0.00 2.01
619 662 3.133721 TGCTGGCTTTGGTTGTTGTTAAT 59.866 39.130 0.00 0.00 0.00 1.40
620 663 4.126437 GCTGGCTTTGGTTGTTGTTAATT 58.874 39.130 0.00 0.00 0.00 1.40
621 664 4.574421 GCTGGCTTTGGTTGTTGTTAATTT 59.426 37.500 0.00 0.00 0.00 1.82
622 665 5.755861 GCTGGCTTTGGTTGTTGTTAATTTA 59.244 36.000 0.00 0.00 0.00 1.40
623 666 6.073819 GCTGGCTTTGGTTGTTGTTAATTTAG 60.074 38.462 0.00 0.00 0.00 1.85
624 667 6.284459 TGGCTTTGGTTGTTGTTAATTTAGG 58.716 36.000 0.00 0.00 0.00 2.69
625 668 6.127026 TGGCTTTGGTTGTTGTTAATTTAGGT 60.127 34.615 0.00 0.00 0.00 3.08
626 669 6.201997 GGCTTTGGTTGTTGTTAATTTAGGTG 59.798 38.462 0.00 0.00 0.00 4.00
627 670 6.759356 GCTTTGGTTGTTGTTAATTTAGGTGT 59.241 34.615 0.00 0.00 0.00 4.16
628 671 7.921745 GCTTTGGTTGTTGTTAATTTAGGTGTA 59.078 33.333 0.00 0.00 0.00 2.90
629 672 9.240159 CTTTGGTTGTTGTTAATTTAGGTGTAC 57.760 33.333 0.00 0.00 0.00 2.90
630 673 7.876936 TGGTTGTTGTTAATTTAGGTGTACA 57.123 32.000 0.00 0.00 0.00 2.90
631 674 7.932335 TGGTTGTTGTTAATTTAGGTGTACAG 58.068 34.615 0.00 0.00 0.00 2.74
632 675 7.013464 TGGTTGTTGTTAATTTAGGTGTACAGG 59.987 37.037 0.00 0.00 0.00 4.00
633 676 7.364970 GTTGTTGTTAATTTAGGTGTACAGGG 58.635 38.462 0.00 0.00 0.00 4.45
634 677 6.839454 TGTTGTTAATTTAGGTGTACAGGGA 58.161 36.000 0.00 0.00 0.00 4.20
635 678 7.288560 TGTTGTTAATTTAGGTGTACAGGGAA 58.711 34.615 0.00 0.00 0.00 3.97
636 679 7.446013 TGTTGTTAATTTAGGTGTACAGGGAAG 59.554 37.037 0.00 0.00 0.00 3.46
637 680 7.319052 TGTTAATTTAGGTGTACAGGGAAGA 57.681 36.000 0.00 0.00 0.00 2.87
638 681 7.747690 TGTTAATTTAGGTGTACAGGGAAGAA 58.252 34.615 0.00 0.00 0.00 2.52
639 682 7.881232 TGTTAATTTAGGTGTACAGGGAAGAAG 59.119 37.037 0.00 0.00 0.00 2.85
640 683 6.697641 AATTTAGGTGTACAGGGAAGAAGA 57.302 37.500 0.00 0.00 0.00 2.87
641 684 6.893020 ATTTAGGTGTACAGGGAAGAAGAT 57.107 37.500 0.00 0.00 0.00 2.40
642 685 7.989947 ATTTAGGTGTACAGGGAAGAAGATA 57.010 36.000 0.00 0.00 0.00 1.98
643 686 7.801893 TTTAGGTGTACAGGGAAGAAGATAA 57.198 36.000 0.00 0.00 0.00 1.75
644 687 7.801893 TTAGGTGTACAGGGAAGAAGATAAA 57.198 36.000 0.00 0.00 0.00 1.40
645 688 6.301169 AGGTGTACAGGGAAGAAGATAAAG 57.699 41.667 0.00 0.00 0.00 1.85
646 689 6.023603 AGGTGTACAGGGAAGAAGATAAAGA 58.976 40.000 0.00 0.00 0.00 2.52
647 690 6.674419 AGGTGTACAGGGAAGAAGATAAAGAT 59.326 38.462 0.00 0.00 0.00 2.40
648 691 6.763610 GGTGTACAGGGAAGAAGATAAAGATG 59.236 42.308 0.00 0.00 0.00 2.90
649 692 7.364762 GGTGTACAGGGAAGAAGATAAAGATGA 60.365 40.741 0.00 0.00 0.00 2.92
650 693 7.708752 GTGTACAGGGAAGAAGATAAAGATGAG 59.291 40.741 0.00 0.00 0.00 2.90
651 694 6.882768 ACAGGGAAGAAGATAAAGATGAGT 57.117 37.500 0.00 0.00 0.00 3.41
652 695 6.648192 ACAGGGAAGAAGATAAAGATGAGTG 58.352 40.000 0.00 0.00 0.00 3.51
653 696 6.214412 ACAGGGAAGAAGATAAAGATGAGTGT 59.786 38.462 0.00 0.00 0.00 3.55
654 697 6.538021 CAGGGAAGAAGATAAAGATGAGTGTG 59.462 42.308 0.00 0.00 0.00 3.82
655 698 6.214412 AGGGAAGAAGATAAAGATGAGTGTGT 59.786 38.462 0.00 0.00 0.00 3.72
656 699 6.881602 GGGAAGAAGATAAAGATGAGTGTGTT 59.118 38.462 0.00 0.00 0.00 3.32
657 700 7.391833 GGGAAGAAGATAAAGATGAGTGTGTTT 59.608 37.037 0.00 0.00 0.00 2.83
658 701 9.436957 GGAAGAAGATAAAGATGAGTGTGTTTA 57.563 33.333 0.00 0.00 0.00 2.01
663 706 8.467402 AGATAAAGATGAGTGTGTTTAAGACG 57.533 34.615 0.00 0.00 0.00 4.18
664 707 5.924475 AAAGATGAGTGTGTTTAAGACGG 57.076 39.130 0.00 0.00 0.00 4.79
665 708 4.602340 AGATGAGTGTGTTTAAGACGGT 57.398 40.909 0.00 0.00 0.00 4.83
666 709 4.307432 AGATGAGTGTGTTTAAGACGGTG 58.693 43.478 0.00 0.00 0.00 4.94
667 710 3.530265 TGAGTGTGTTTAAGACGGTGT 57.470 42.857 0.00 0.00 0.00 4.16
668 711 3.191669 TGAGTGTGTTTAAGACGGTGTG 58.808 45.455 0.00 0.00 0.00 3.82
669 712 2.542595 GAGTGTGTTTAAGACGGTGTGG 59.457 50.000 0.00 0.00 0.00 4.17
670 713 2.168936 AGTGTGTTTAAGACGGTGTGGA 59.831 45.455 0.00 0.00 0.00 4.02
671 714 3.135994 GTGTGTTTAAGACGGTGTGGAT 58.864 45.455 0.00 0.00 0.00 3.41
672 715 4.039488 AGTGTGTTTAAGACGGTGTGGATA 59.961 41.667 0.00 0.00 0.00 2.59
673 716 4.751098 GTGTGTTTAAGACGGTGTGGATAA 59.249 41.667 0.00 0.00 0.00 1.75
674 717 4.992319 TGTGTTTAAGACGGTGTGGATAAG 59.008 41.667 0.00 0.00 0.00 1.73
675 718 4.390909 GTGTTTAAGACGGTGTGGATAAGG 59.609 45.833 0.00 0.00 0.00 2.69
676 719 4.283978 TGTTTAAGACGGTGTGGATAAGGA 59.716 41.667 0.00 0.00 0.00 3.36
677 720 5.221682 TGTTTAAGACGGTGTGGATAAGGAA 60.222 40.000 0.00 0.00 0.00 3.36
678 721 3.329929 AAGACGGTGTGGATAAGGAAC 57.670 47.619 0.00 0.00 0.00 3.62
679 722 1.203994 AGACGGTGTGGATAAGGAACG 59.796 52.381 0.00 0.00 0.00 3.95
680 723 0.971386 ACGGTGTGGATAAGGAACGT 59.029 50.000 0.00 0.00 0.00 3.99
681 724 1.337447 ACGGTGTGGATAAGGAACGTG 60.337 52.381 0.00 0.00 31.60 4.49
682 725 1.337447 CGGTGTGGATAAGGAACGTGT 60.337 52.381 0.00 0.00 0.00 4.49
683 726 2.073816 GGTGTGGATAAGGAACGTGTG 58.926 52.381 0.00 0.00 0.00 3.82
684 727 2.073816 GTGTGGATAAGGAACGTGTGG 58.926 52.381 0.00 0.00 0.00 4.17
685 728 1.695242 TGTGGATAAGGAACGTGTGGT 59.305 47.619 0.00 0.00 0.00 4.16
686 729 2.073816 GTGGATAAGGAACGTGTGGTG 58.926 52.381 0.00 0.00 0.00 4.17
687 730 1.695242 TGGATAAGGAACGTGTGGTGT 59.305 47.619 0.00 0.00 0.00 4.16
688 731 2.073816 GGATAAGGAACGTGTGGTGTG 58.926 52.381 0.00 0.00 0.00 3.82
689 732 2.549349 GGATAAGGAACGTGTGGTGTGT 60.549 50.000 0.00 0.00 0.00 3.72
690 733 1.942677 TAAGGAACGTGTGGTGTGTG 58.057 50.000 0.00 0.00 0.00 3.82
691 734 0.250793 AAGGAACGTGTGGTGTGTGA 59.749 50.000 0.00 0.00 0.00 3.58
692 735 0.179084 AGGAACGTGTGGTGTGTGAG 60.179 55.000 0.00 0.00 0.00 3.51
693 736 0.179094 GGAACGTGTGGTGTGTGAGA 60.179 55.000 0.00 0.00 0.00 3.27
694 737 1.209128 GAACGTGTGGTGTGTGAGAG 58.791 55.000 0.00 0.00 0.00 3.20
695 738 0.179084 AACGTGTGGTGTGTGAGAGG 60.179 55.000 0.00 0.00 0.00 3.69
696 739 1.040893 ACGTGTGGTGTGTGAGAGGA 61.041 55.000 0.00 0.00 0.00 3.71
697 740 0.318441 CGTGTGGTGTGTGAGAGGAT 59.682 55.000 0.00 0.00 0.00 3.24
698 741 1.544246 CGTGTGGTGTGTGAGAGGATA 59.456 52.381 0.00 0.00 0.00 2.59
699 742 2.416027 CGTGTGGTGTGTGAGAGGATAG 60.416 54.545 0.00 0.00 0.00 2.08
700 743 2.093973 GTGTGGTGTGTGAGAGGATAGG 60.094 54.545 0.00 0.00 0.00 2.57
701 744 2.225267 TGTGGTGTGTGAGAGGATAGGA 60.225 50.000 0.00 0.00 0.00 2.94
702 745 3.034635 GTGGTGTGTGAGAGGATAGGAT 58.965 50.000 0.00 0.00 0.00 3.24
703 746 4.215908 GTGGTGTGTGAGAGGATAGGATA 58.784 47.826 0.00 0.00 0.00 2.59
704 747 4.038162 GTGGTGTGTGAGAGGATAGGATAC 59.962 50.000 0.00 0.00 0.00 2.24
705 748 4.215908 GGTGTGTGAGAGGATAGGATACA 58.784 47.826 0.00 0.00 41.41 2.29
706 749 4.649674 GGTGTGTGAGAGGATAGGATACAA 59.350 45.833 0.00 0.00 41.41 2.41
707 750 5.452077 GGTGTGTGAGAGGATAGGATACAAC 60.452 48.000 0.00 0.00 41.41 3.32
708 751 5.127194 GTGTGTGAGAGGATAGGATACAACA 59.873 44.000 0.00 0.00 41.41 3.33
709 752 5.899547 TGTGTGAGAGGATAGGATACAACAT 59.100 40.000 0.00 0.00 41.41 2.71
710 753 6.183360 TGTGTGAGAGGATAGGATACAACATG 60.183 42.308 0.00 0.00 41.41 3.21
711 754 5.899547 TGTGAGAGGATAGGATACAACATGT 59.100 40.000 0.00 0.00 41.41 3.21
712 755 6.040955 TGTGAGAGGATAGGATACAACATGTC 59.959 42.308 0.00 0.00 41.41 3.06
713 756 6.266558 GTGAGAGGATAGGATACAACATGTCT 59.733 42.308 0.00 0.00 41.41 3.41
714 757 6.841229 TGAGAGGATAGGATACAACATGTCTT 59.159 38.462 0.00 0.00 41.41 3.01
715 758 8.004801 TGAGAGGATAGGATACAACATGTCTTA 58.995 37.037 0.00 0.00 41.41 2.10
716 759 8.184304 AGAGGATAGGATACAACATGTCTTAC 57.816 38.462 0.00 0.00 41.41 2.34
717 760 8.007742 AGAGGATAGGATACAACATGTCTTACT 58.992 37.037 0.00 0.00 41.41 2.24
718 761 9.298250 GAGGATAGGATACAACATGTCTTACTA 57.702 37.037 0.00 0.00 41.41 1.82
719 762 9.830186 AGGATAGGATACAACATGTCTTACTAT 57.170 33.333 0.00 3.35 41.41 2.12
724 767 8.982723 AGGATACAACATGTCTTACTATTCAGT 58.017 33.333 0.00 0.00 37.76 3.41
725 768 9.035607 GGATACAACATGTCTTACTATTCAGTG 57.964 37.037 0.00 0.00 36.14 3.66
726 769 9.803315 GATACAACATGTCTTACTATTCAGTGA 57.197 33.333 0.00 0.00 36.14 3.41
740 783 7.519002 ACTATTCAGTGATAAAAAGAACGTGC 58.481 34.615 0.00 0.00 32.25 5.34
741 784 4.383774 TCAGTGATAAAAAGAACGTGCG 57.616 40.909 0.00 0.00 0.00 5.34
742 785 2.902484 CAGTGATAAAAAGAACGTGCGC 59.098 45.455 0.00 0.00 0.00 6.09
743 786 2.806244 AGTGATAAAAAGAACGTGCGCT 59.194 40.909 9.73 0.00 0.00 5.92
744 787 3.250040 AGTGATAAAAAGAACGTGCGCTT 59.750 39.130 9.73 0.00 0.00 4.68
745 788 3.598246 GTGATAAAAAGAACGTGCGCTTC 59.402 43.478 9.73 4.06 0.00 3.86
746 789 3.248841 TGATAAAAAGAACGTGCGCTTCA 59.751 39.130 9.73 0.00 0.00 3.02
747 790 2.553079 AAAAAGAACGTGCGCTTCAA 57.447 40.000 9.73 0.00 0.00 2.69
748 791 2.553079 AAAAGAACGTGCGCTTCAAA 57.447 40.000 9.73 0.00 0.00 2.69
749 792 2.105323 AAAGAACGTGCGCTTCAAAG 57.895 45.000 9.73 0.00 0.00 2.77
750 793 1.295792 AAGAACGTGCGCTTCAAAGA 58.704 45.000 9.73 0.00 0.00 2.52
751 794 1.295792 AGAACGTGCGCTTCAAAGAA 58.704 45.000 9.73 0.00 0.00 2.52
752 795 1.261619 AGAACGTGCGCTTCAAAGAAG 59.738 47.619 9.73 2.48 0.00 2.85
753 796 1.003866 GAACGTGCGCTTCAAAGAAGT 60.004 47.619 9.73 0.00 0.00 3.01
754 797 1.860676 ACGTGCGCTTCAAAGAAGTA 58.139 45.000 9.73 0.00 0.00 2.24
755 798 2.206750 ACGTGCGCTTCAAAGAAGTAA 58.793 42.857 9.73 0.00 0.00 2.24
756 799 2.806244 ACGTGCGCTTCAAAGAAGTAAT 59.194 40.909 9.73 0.00 0.00 1.89
757 800 3.155998 CGTGCGCTTCAAAGAAGTAATG 58.844 45.455 9.73 0.00 0.00 1.90
758 801 3.363970 CGTGCGCTTCAAAGAAGTAATGT 60.364 43.478 9.73 0.00 0.00 2.71
759 802 4.537015 GTGCGCTTCAAAGAAGTAATGTT 58.463 39.130 9.73 0.00 0.00 2.71
760 803 4.976116 GTGCGCTTCAAAGAAGTAATGTTT 59.024 37.500 9.73 0.00 0.00 2.83
761 804 5.458779 GTGCGCTTCAAAGAAGTAATGTTTT 59.541 36.000 9.73 0.00 0.00 2.43
762 805 6.019881 GTGCGCTTCAAAGAAGTAATGTTTTT 60.020 34.615 9.73 0.00 0.00 1.94
856 900 2.043980 CCCACCATTTTCGTCCGGG 61.044 63.158 0.00 0.00 0.00 5.73
939 998 3.202595 TCCCTAGAACTCCCAGAGTAGAC 59.797 52.174 0.00 0.00 42.59 2.59
940 999 3.053544 CCCTAGAACTCCCAGAGTAGACA 60.054 52.174 0.00 0.00 42.59 3.41
2757 3659 2.935201 GAGCCTGTTATTGCAGTCTCAG 59.065 50.000 0.11 6.59 40.16 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.458163 GAGCCGGGTCGATGTGGA 61.458 66.667 19.39 0.00 0.00 4.02
88 89 2.437359 GTGCAGAGCCGAGGCAAT 60.437 61.111 17.18 0.80 44.88 3.56
104 105 1.227556 GGTGTTCTGCAGGTGACGT 60.228 57.895 15.13 0.00 0.00 4.34
215 216 3.596066 CTGCAGTGGGAGGTGACCG 62.596 68.421 5.25 0.00 0.00 4.79
238 239 2.698763 GCTCAGGCTGCAGGAAAGC 61.699 63.158 17.12 8.81 40.06 3.51
260 261 1.596477 CTATTGCAGGAGAGGCCGC 60.596 63.158 0.00 0.00 43.43 6.53
264 265 1.537776 CGACAGCTATTGCAGGAGAGG 60.538 57.143 1.12 0.00 42.74 3.69
265 266 1.135915 ACGACAGCTATTGCAGGAGAG 59.864 52.381 1.12 0.00 42.74 3.20
345 388 8.292448 GTCAGTTCAGATAAACAATGTTGATGT 58.708 33.333 0.00 0.00 0.00 3.06
419 462 4.647564 ACAGATTGAATGTTGGAGGAGT 57.352 40.909 0.00 0.00 0.00 3.85
462 505 2.955751 GATACCCGAGCAGGTCACGC 62.956 65.000 0.00 0.00 41.58 5.34
463 506 1.065928 GATACCCGAGCAGGTCACG 59.934 63.158 0.00 0.00 41.58 4.35
464 507 0.386113 GAGATACCCGAGCAGGTCAC 59.614 60.000 0.00 0.00 41.58 3.67
465 508 0.033503 TGAGATACCCGAGCAGGTCA 60.034 55.000 0.00 0.00 41.58 4.02
466 509 0.671251 CTGAGATACCCGAGCAGGTC 59.329 60.000 0.00 0.00 41.58 3.85
467 510 0.757188 CCTGAGATACCCGAGCAGGT 60.757 60.000 0.00 0.00 44.37 4.00
468 511 2.045280 CCTGAGATACCCGAGCAGG 58.955 63.158 0.00 0.00 40.03 4.85
469 512 1.365633 GCCTGAGATACCCGAGCAG 59.634 63.158 0.00 0.00 0.00 4.24
470 513 1.381191 TGCCTGAGATACCCGAGCA 60.381 57.895 0.00 0.00 0.00 4.26
471 514 1.109920 TCTGCCTGAGATACCCGAGC 61.110 60.000 0.00 0.00 0.00 5.03
472 515 0.671251 GTCTGCCTGAGATACCCGAG 59.329 60.000 0.00 0.00 31.63 4.63
473 516 0.755698 GGTCTGCCTGAGATACCCGA 60.756 60.000 0.00 0.00 31.63 5.14
474 517 0.757188 AGGTCTGCCTGAGATACCCG 60.757 60.000 0.00 0.00 45.05 5.28
475 518 1.414550 GAAGGTCTGCCTGAGATACCC 59.585 57.143 0.00 0.00 46.33 3.69
476 519 1.414550 GGAAGGTCTGCCTGAGATACC 59.585 57.143 0.00 0.00 46.33 2.73
477 520 2.111384 TGGAAGGTCTGCCTGAGATAC 58.889 52.381 0.00 0.00 46.33 2.24
478 521 2.550277 TGGAAGGTCTGCCTGAGATA 57.450 50.000 0.00 0.00 46.33 1.98
479 522 1.489649 CATGGAAGGTCTGCCTGAGAT 59.510 52.381 0.00 0.00 46.33 2.75
480 523 0.907486 CATGGAAGGTCTGCCTGAGA 59.093 55.000 0.00 0.00 46.33 3.27
481 524 0.107312 CCATGGAAGGTCTGCCTGAG 60.107 60.000 5.56 0.00 46.33 3.35
482 525 1.993653 CCATGGAAGGTCTGCCTGA 59.006 57.895 5.56 0.00 46.33 3.86
483 526 1.751927 GCCATGGAAGGTCTGCCTG 60.752 63.158 18.40 0.00 46.33 4.85
485 528 1.452833 GAGCCATGGAAGGTCTGCC 60.453 63.158 18.40 0.00 0.00 4.85
486 529 1.452833 GGAGCCATGGAAGGTCTGC 60.453 63.158 18.40 3.74 32.35 4.26
487 530 0.107312 CAGGAGCCATGGAAGGTCTG 60.107 60.000 18.40 10.86 32.35 3.51
488 531 0.548682 ACAGGAGCCATGGAAGGTCT 60.549 55.000 18.40 1.34 32.35 3.85
489 532 0.107459 GACAGGAGCCATGGAAGGTC 60.107 60.000 18.40 10.99 0.00 3.85
490 533 0.842030 TGACAGGAGCCATGGAAGGT 60.842 55.000 18.40 5.24 0.00 3.50
491 534 0.549950 ATGACAGGAGCCATGGAAGG 59.450 55.000 18.40 1.61 0.00 3.46
492 535 2.022195 CAATGACAGGAGCCATGGAAG 58.978 52.381 18.40 1.64 0.00 3.46
493 536 1.634973 TCAATGACAGGAGCCATGGAA 59.365 47.619 18.40 0.00 0.00 3.53
494 537 1.065199 GTCAATGACAGGAGCCATGGA 60.065 52.381 18.40 0.00 32.09 3.41
495 538 1.386533 GTCAATGACAGGAGCCATGG 58.613 55.000 7.63 7.63 32.09 3.66
496 539 1.064906 AGGTCAATGACAGGAGCCATG 60.065 52.381 15.86 0.00 33.68 3.66
497 540 1.293062 AGGTCAATGACAGGAGCCAT 58.707 50.000 15.86 0.00 33.68 4.40
498 541 1.003580 GAAGGTCAATGACAGGAGCCA 59.996 52.381 15.86 0.00 33.68 4.75
499 542 1.743996 GAAGGTCAATGACAGGAGCC 58.256 55.000 15.86 0.00 33.68 4.70
500 543 1.363744 CGAAGGTCAATGACAGGAGC 58.636 55.000 15.86 0.00 33.68 4.70
501 544 1.363744 GCGAAGGTCAATGACAGGAG 58.636 55.000 15.86 4.93 33.68 3.69
502 545 0.036388 GGCGAAGGTCAATGACAGGA 60.036 55.000 15.86 0.00 33.68 3.86
503 546 1.026718 GGGCGAAGGTCAATGACAGG 61.027 60.000 15.86 2.14 33.68 4.00
504 547 1.361668 CGGGCGAAGGTCAATGACAG 61.362 60.000 15.86 4.59 33.68 3.51
505 548 1.375396 CGGGCGAAGGTCAATGACA 60.375 57.895 15.86 0.00 33.68 3.58
506 549 1.079405 TCGGGCGAAGGTCAATGAC 60.079 57.895 4.51 4.51 0.00 3.06
507 550 1.079405 GTCGGGCGAAGGTCAATGA 60.079 57.895 0.00 0.00 0.00 2.57
508 551 2.452813 CGTCGGGCGAAGGTCAATG 61.453 63.158 0.00 0.00 44.77 2.82
509 552 2.125673 CGTCGGGCGAAGGTCAAT 60.126 61.111 0.00 0.00 44.77 2.57
510 553 3.562779 GACGTCGGGCGAAGGTCAA 62.563 63.158 9.82 0.00 44.77 3.18
511 554 4.047059 GACGTCGGGCGAAGGTCA 62.047 66.667 9.82 0.00 44.77 4.02
512 555 3.680338 GAGACGTCGGGCGAAGGTC 62.680 68.421 9.82 0.00 44.77 3.85
513 556 3.745803 GAGACGTCGGGCGAAGGT 61.746 66.667 9.82 0.00 44.77 3.50
514 557 3.398353 GAGAGACGTCGGGCGAAGG 62.398 68.421 9.82 0.00 44.77 3.46
515 558 1.994507 ATGAGAGACGTCGGGCGAAG 61.995 60.000 9.82 0.00 44.77 3.79
516 559 1.592400 AATGAGAGACGTCGGGCGAA 61.592 55.000 9.82 0.00 44.77 4.70
517 560 2.044555 AATGAGAGACGTCGGGCGA 61.045 57.895 9.82 0.00 44.77 5.54
519 562 2.167861 GCAATGAGAGACGTCGGGC 61.168 63.158 10.46 3.92 0.00 6.13
520 563 0.803768 CAGCAATGAGAGACGTCGGG 60.804 60.000 10.46 0.00 0.00 5.14
521 564 1.416813 GCAGCAATGAGAGACGTCGG 61.417 60.000 10.46 0.00 0.00 4.79
522 565 0.457509 AGCAGCAATGAGAGACGTCG 60.458 55.000 10.46 0.00 0.00 5.12
523 566 0.997932 CAGCAGCAATGAGAGACGTC 59.002 55.000 7.70 7.70 0.00 4.34
524 567 1.018226 GCAGCAGCAATGAGAGACGT 61.018 55.000 0.00 0.00 41.58 4.34
525 568 1.714414 GCAGCAGCAATGAGAGACG 59.286 57.895 0.00 0.00 41.58 4.18
536 579 4.017877 GACACCGTGTGCAGCAGC 62.018 66.667 9.42 0.00 36.98 5.25
537 580 2.280389 AGACACCGTGTGCAGCAG 60.280 61.111 9.42 0.00 36.98 4.24
538 581 2.588596 CAGACACCGTGTGCAGCA 60.589 61.111 9.42 0.00 36.98 4.41
539 582 2.180204 AACAGACACCGTGTGCAGC 61.180 57.895 9.42 0.00 36.98 5.25
540 583 1.089481 ACAACAGACACCGTGTGCAG 61.089 55.000 9.42 1.05 36.98 4.41
541 584 1.078778 ACAACAGACACCGTGTGCA 60.079 52.632 9.42 0.00 36.98 4.57
542 585 1.351707 CACAACAGACACCGTGTGC 59.648 57.895 9.42 1.04 36.98 4.57
543 586 1.062002 GAACACAACAGACACCGTGTG 59.938 52.381 9.42 0.00 41.56 3.82
544 587 1.365699 GAACACAACAGACACCGTGT 58.634 50.000 3.13 3.13 44.17 4.49
545 588 0.655733 GGAACACAACAGACACCGTG 59.344 55.000 0.00 0.00 35.48 4.94
546 589 0.463116 GGGAACACAACAGACACCGT 60.463 55.000 0.00 0.00 0.00 4.83
547 590 0.179056 AGGGAACACAACAGACACCG 60.179 55.000 0.00 0.00 0.00 4.94
548 591 1.308998 CAGGGAACACAACAGACACC 58.691 55.000 0.00 0.00 0.00 4.16
549 592 1.940613 GACAGGGAACACAACAGACAC 59.059 52.381 0.00 0.00 0.00 3.67
550 593 1.557371 TGACAGGGAACACAACAGACA 59.443 47.619 0.00 0.00 0.00 3.41
551 594 1.940613 GTGACAGGGAACACAACAGAC 59.059 52.381 0.00 0.00 37.05 3.51
552 595 1.134220 GGTGACAGGGAACACAACAGA 60.134 52.381 0.00 0.00 38.57 3.41
553 596 1.134098 AGGTGACAGGGAACACAACAG 60.134 52.381 0.00 0.00 38.57 3.16
554 597 0.916086 AGGTGACAGGGAACACAACA 59.084 50.000 0.00 0.00 38.57 3.33
555 598 1.947456 GAAGGTGACAGGGAACACAAC 59.053 52.381 0.00 0.00 38.57 3.32
556 599 1.133915 GGAAGGTGACAGGGAACACAA 60.134 52.381 0.00 0.00 38.57 3.33
557 600 0.472471 GGAAGGTGACAGGGAACACA 59.528 55.000 0.00 0.00 38.57 3.72
558 601 0.250770 GGGAAGGTGACAGGGAACAC 60.251 60.000 0.00 0.00 36.44 3.32
559 602 0.696143 TGGGAAGGTGACAGGGAACA 60.696 55.000 0.00 0.00 0.00 3.18
560 603 0.698818 ATGGGAAGGTGACAGGGAAC 59.301 55.000 0.00 0.00 0.00 3.62
561 604 0.698238 CATGGGAAGGTGACAGGGAA 59.302 55.000 0.00 0.00 0.00 3.97
562 605 1.852157 GCATGGGAAGGTGACAGGGA 61.852 60.000 0.00 0.00 0.00 4.20
563 606 1.379044 GCATGGGAAGGTGACAGGG 60.379 63.158 0.00 0.00 0.00 4.45
564 607 0.033796 ATGCATGGGAAGGTGACAGG 60.034 55.000 0.00 0.00 0.00 4.00
565 608 1.100510 CATGCATGGGAAGGTGACAG 58.899 55.000 19.40 0.00 0.00 3.51
566 609 0.405198 ACATGCATGGGAAGGTGACA 59.595 50.000 29.41 0.00 0.00 3.58
567 610 1.098050 GACATGCATGGGAAGGTGAC 58.902 55.000 29.41 0.00 0.00 3.67
568 611 0.697658 TGACATGCATGGGAAGGTGA 59.302 50.000 29.41 0.00 0.00 4.02
569 612 0.813184 GTGACATGCATGGGAAGGTG 59.187 55.000 29.41 4.81 0.00 4.00
570 613 0.323725 GGTGACATGCATGGGAAGGT 60.324 55.000 29.41 8.33 0.00 3.50
571 614 1.378882 CGGTGACATGCATGGGAAGG 61.379 60.000 29.41 12.48 0.00 3.46
572 615 0.392863 TCGGTGACATGCATGGGAAG 60.393 55.000 29.41 16.32 0.00 3.46
573 616 0.392863 CTCGGTGACATGCATGGGAA 60.393 55.000 29.41 12.40 0.00 3.97
574 617 1.221566 CTCGGTGACATGCATGGGA 59.778 57.895 29.41 13.32 0.00 4.37
575 618 0.677731 AACTCGGTGACATGCATGGG 60.678 55.000 29.41 13.34 0.00 4.00
576 619 0.448990 CAACTCGGTGACATGCATGG 59.551 55.000 29.41 12.19 0.00 3.66
577 620 0.179181 GCAACTCGGTGACATGCATG 60.179 55.000 25.09 25.09 37.00 4.06
578 621 0.321919 AGCAACTCGGTGACATGCAT 60.322 50.000 0.00 0.00 39.42 3.96
579 622 1.071299 AGCAACTCGGTGACATGCA 59.929 52.632 0.00 0.00 39.42 3.96
580 623 1.499056 CAGCAACTCGGTGACATGC 59.501 57.895 0.00 0.00 46.47 4.06
581 624 0.952497 AGCAGCAACTCGGTGACATG 60.952 55.000 0.00 0.00 46.47 3.21
582 625 0.952497 CAGCAGCAACTCGGTGACAT 60.952 55.000 0.00 0.00 46.47 3.06
583 626 1.595109 CAGCAGCAACTCGGTGACA 60.595 57.895 0.00 0.00 46.47 3.58
584 627 2.320587 CCAGCAGCAACTCGGTGAC 61.321 63.158 0.00 0.00 46.47 3.67
585 628 2.031012 CCAGCAGCAACTCGGTGA 59.969 61.111 0.00 0.00 46.47 4.02
586 629 3.730761 GCCAGCAGCAACTCGGTG 61.731 66.667 0.00 0.00 46.27 4.94
595 638 0.877213 CAACAACCAAAGCCAGCAGC 60.877 55.000 0.00 0.00 44.25 5.25
596 639 0.461135 ACAACAACCAAAGCCAGCAG 59.539 50.000 0.00 0.00 0.00 4.24
597 640 0.901124 AACAACAACCAAAGCCAGCA 59.099 45.000 0.00 0.00 0.00 4.41
598 641 2.880963 TAACAACAACCAAAGCCAGC 57.119 45.000 0.00 0.00 0.00 4.85
599 642 6.423604 CCTAAATTAACAACAACCAAAGCCAG 59.576 38.462 0.00 0.00 0.00 4.85
600 643 6.127026 ACCTAAATTAACAACAACCAAAGCCA 60.127 34.615 0.00 0.00 0.00 4.75
601 644 6.201997 CACCTAAATTAACAACAACCAAAGCC 59.798 38.462 0.00 0.00 0.00 4.35
602 645 6.759356 ACACCTAAATTAACAACAACCAAAGC 59.241 34.615 0.00 0.00 0.00 3.51
603 646 9.240159 GTACACCTAAATTAACAACAACCAAAG 57.760 33.333 0.00 0.00 0.00 2.77
604 647 8.746530 TGTACACCTAAATTAACAACAACCAAA 58.253 29.630 0.00 0.00 0.00 3.28
605 648 8.289939 TGTACACCTAAATTAACAACAACCAA 57.710 30.769 0.00 0.00 0.00 3.67
606 649 7.013464 CCTGTACACCTAAATTAACAACAACCA 59.987 37.037 0.00 0.00 0.00 3.67
607 650 7.364970 CCTGTACACCTAAATTAACAACAACC 58.635 38.462 0.00 0.00 0.00 3.77
608 651 7.229106 TCCCTGTACACCTAAATTAACAACAAC 59.771 37.037 0.00 0.00 0.00 3.32
609 652 7.288560 TCCCTGTACACCTAAATTAACAACAA 58.711 34.615 0.00 0.00 0.00 2.83
610 653 6.839454 TCCCTGTACACCTAAATTAACAACA 58.161 36.000 0.00 0.00 0.00 3.33
611 654 7.662669 TCTTCCCTGTACACCTAAATTAACAAC 59.337 37.037 0.00 0.00 0.00 3.32
612 655 7.747690 TCTTCCCTGTACACCTAAATTAACAA 58.252 34.615 0.00 0.00 0.00 2.83
613 656 7.319052 TCTTCCCTGTACACCTAAATTAACA 57.681 36.000 0.00 0.00 0.00 2.41
614 657 8.098912 TCTTCTTCCCTGTACACCTAAATTAAC 58.901 37.037 0.00 0.00 0.00 2.01
615 658 8.209802 TCTTCTTCCCTGTACACCTAAATTAA 57.790 34.615 0.00 0.00 0.00 1.40
616 659 7.801893 TCTTCTTCCCTGTACACCTAAATTA 57.198 36.000 0.00 0.00 0.00 1.40
617 660 6.697641 TCTTCTTCCCTGTACACCTAAATT 57.302 37.500 0.00 0.00 0.00 1.82
618 661 6.893020 ATCTTCTTCCCTGTACACCTAAAT 57.107 37.500 0.00 0.00 0.00 1.40
619 662 7.801893 TTATCTTCTTCCCTGTACACCTAAA 57.198 36.000 0.00 0.00 0.00 1.85
620 663 7.676893 TCTTTATCTTCTTCCCTGTACACCTAA 59.323 37.037 0.00 0.00 0.00 2.69
621 664 7.186972 TCTTTATCTTCTTCCCTGTACACCTA 58.813 38.462 0.00 0.00 0.00 3.08
622 665 6.023603 TCTTTATCTTCTTCCCTGTACACCT 58.976 40.000 0.00 0.00 0.00 4.00
623 666 6.295719 TCTTTATCTTCTTCCCTGTACACC 57.704 41.667 0.00 0.00 0.00 4.16
624 667 7.556844 TCATCTTTATCTTCTTCCCTGTACAC 58.443 38.462 0.00 0.00 0.00 2.90
625 668 7.400339 ACTCATCTTTATCTTCTTCCCTGTACA 59.600 37.037 0.00 0.00 0.00 2.90
626 669 7.708752 CACTCATCTTTATCTTCTTCCCTGTAC 59.291 40.741 0.00 0.00 0.00 2.90
627 670 7.400339 ACACTCATCTTTATCTTCTTCCCTGTA 59.600 37.037 0.00 0.00 0.00 2.74
628 671 6.214412 ACACTCATCTTTATCTTCTTCCCTGT 59.786 38.462 0.00 0.00 0.00 4.00
629 672 6.538021 CACACTCATCTTTATCTTCTTCCCTG 59.462 42.308 0.00 0.00 0.00 4.45
630 673 6.214412 ACACACTCATCTTTATCTTCTTCCCT 59.786 38.462 0.00 0.00 0.00 4.20
631 674 6.410540 ACACACTCATCTTTATCTTCTTCCC 58.589 40.000 0.00 0.00 0.00 3.97
632 675 7.913674 AACACACTCATCTTTATCTTCTTCC 57.086 36.000 0.00 0.00 0.00 3.46
637 680 8.926710 CGTCTTAAACACACTCATCTTTATCTT 58.073 33.333 0.00 0.00 0.00 2.40
638 681 7.545965 CCGTCTTAAACACACTCATCTTTATCT 59.454 37.037 0.00 0.00 0.00 1.98
639 682 7.331193 ACCGTCTTAAACACACTCATCTTTATC 59.669 37.037 0.00 0.00 0.00 1.75
640 683 7.117812 CACCGTCTTAAACACACTCATCTTTAT 59.882 37.037 0.00 0.00 0.00 1.40
641 684 6.422701 CACCGTCTTAAACACACTCATCTTTA 59.577 38.462 0.00 0.00 0.00 1.85
642 685 5.236478 CACCGTCTTAAACACACTCATCTTT 59.764 40.000 0.00 0.00 0.00 2.52
643 686 4.750098 CACCGTCTTAAACACACTCATCTT 59.250 41.667 0.00 0.00 0.00 2.40
644 687 4.202223 ACACCGTCTTAAACACACTCATCT 60.202 41.667 0.00 0.00 0.00 2.90
645 688 4.056050 ACACCGTCTTAAACACACTCATC 58.944 43.478 0.00 0.00 0.00 2.92
646 689 3.807622 CACACCGTCTTAAACACACTCAT 59.192 43.478 0.00 0.00 0.00 2.90
647 690 3.191669 CACACCGTCTTAAACACACTCA 58.808 45.455 0.00 0.00 0.00 3.41
648 691 2.542595 CCACACCGTCTTAAACACACTC 59.457 50.000 0.00 0.00 0.00 3.51
649 692 2.168936 TCCACACCGTCTTAAACACACT 59.831 45.455 0.00 0.00 0.00 3.55
650 693 2.553086 TCCACACCGTCTTAAACACAC 58.447 47.619 0.00 0.00 0.00 3.82
651 694 2.983907 TCCACACCGTCTTAAACACA 57.016 45.000 0.00 0.00 0.00 3.72
652 695 4.390909 CCTTATCCACACCGTCTTAAACAC 59.609 45.833 0.00 0.00 0.00 3.32
653 696 4.283978 TCCTTATCCACACCGTCTTAAACA 59.716 41.667 0.00 0.00 0.00 2.83
654 697 4.824289 TCCTTATCCACACCGTCTTAAAC 58.176 43.478 0.00 0.00 0.00 2.01
655 698 5.240121 GTTCCTTATCCACACCGTCTTAAA 58.760 41.667 0.00 0.00 0.00 1.52
656 699 4.618927 CGTTCCTTATCCACACCGTCTTAA 60.619 45.833 0.00 0.00 0.00 1.85
657 700 3.119388 CGTTCCTTATCCACACCGTCTTA 60.119 47.826 0.00 0.00 0.00 2.10
658 701 2.353406 CGTTCCTTATCCACACCGTCTT 60.353 50.000 0.00 0.00 0.00 3.01
659 702 1.203994 CGTTCCTTATCCACACCGTCT 59.796 52.381 0.00 0.00 0.00 4.18
660 703 1.067354 ACGTTCCTTATCCACACCGTC 60.067 52.381 0.00 0.00 0.00 4.79
661 704 0.971386 ACGTTCCTTATCCACACCGT 59.029 50.000 0.00 0.00 0.00 4.83
662 705 1.337447 ACACGTTCCTTATCCACACCG 60.337 52.381 0.00 0.00 0.00 4.94
663 706 2.073816 CACACGTTCCTTATCCACACC 58.926 52.381 0.00 0.00 0.00 4.16
664 707 2.073816 CCACACGTTCCTTATCCACAC 58.926 52.381 0.00 0.00 0.00 3.82
665 708 1.695242 ACCACACGTTCCTTATCCACA 59.305 47.619 0.00 0.00 0.00 4.17
666 709 2.073816 CACCACACGTTCCTTATCCAC 58.926 52.381 0.00 0.00 0.00 4.02
667 710 1.695242 ACACCACACGTTCCTTATCCA 59.305 47.619 0.00 0.00 0.00 3.41
668 711 2.073816 CACACCACACGTTCCTTATCC 58.926 52.381 0.00 0.00 0.00 2.59
669 712 2.478894 CACACACCACACGTTCCTTATC 59.521 50.000 0.00 0.00 0.00 1.75
670 713 2.103432 TCACACACCACACGTTCCTTAT 59.897 45.455 0.00 0.00 0.00 1.73
671 714 1.481363 TCACACACCACACGTTCCTTA 59.519 47.619 0.00 0.00 0.00 2.69
672 715 0.250793 TCACACACCACACGTTCCTT 59.749 50.000 0.00 0.00 0.00 3.36
673 716 0.179084 CTCACACACCACACGTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
674 717 0.179094 TCTCACACACCACACGTTCC 60.179 55.000 0.00 0.00 0.00 3.62
675 718 1.209128 CTCTCACACACCACACGTTC 58.791 55.000 0.00 0.00 0.00 3.95
676 719 0.179084 CCTCTCACACACCACACGTT 60.179 55.000 0.00 0.00 0.00 3.99
677 720 1.040893 TCCTCTCACACACCACACGT 61.041 55.000 0.00 0.00 0.00 4.49
678 721 0.318441 ATCCTCTCACACACCACACG 59.682 55.000 0.00 0.00 0.00 4.49
679 722 2.093973 CCTATCCTCTCACACACCACAC 60.094 54.545 0.00 0.00 0.00 3.82
680 723 2.179427 CCTATCCTCTCACACACCACA 58.821 52.381 0.00 0.00 0.00 4.17
681 724 2.457598 TCCTATCCTCTCACACACCAC 58.542 52.381 0.00 0.00 0.00 4.16
682 725 2.919772 TCCTATCCTCTCACACACCA 57.080 50.000 0.00 0.00 0.00 4.17
683 726 4.215908 TGTATCCTATCCTCTCACACACC 58.784 47.826 0.00 0.00 0.00 4.16
684 727 5.127194 TGTTGTATCCTATCCTCTCACACAC 59.873 44.000 0.00 0.00 0.00 3.82
685 728 5.269189 TGTTGTATCCTATCCTCTCACACA 58.731 41.667 0.00 0.00 0.00 3.72
686 729 5.854010 TGTTGTATCCTATCCTCTCACAC 57.146 43.478 0.00 0.00 0.00 3.82
687 730 5.899547 ACATGTTGTATCCTATCCTCTCACA 59.100 40.000 0.00 0.00 0.00 3.58
688 731 6.266558 AGACATGTTGTATCCTATCCTCTCAC 59.733 42.308 0.00 0.00 0.00 3.51
689 732 6.377080 AGACATGTTGTATCCTATCCTCTCA 58.623 40.000 0.00 0.00 0.00 3.27
690 733 6.909550 AGACATGTTGTATCCTATCCTCTC 57.090 41.667 0.00 0.00 0.00 3.20
691 734 8.007742 AGTAAGACATGTTGTATCCTATCCTCT 58.992 37.037 0.00 0.00 0.00 3.69
692 735 8.184304 AGTAAGACATGTTGTATCCTATCCTC 57.816 38.462 0.00 0.00 0.00 3.71
693 736 9.830186 ATAGTAAGACATGTTGTATCCTATCCT 57.170 33.333 0.00 0.00 0.00 3.24
698 741 8.982723 ACTGAATAGTAAGACATGTTGTATCCT 58.017 33.333 0.00 0.00 34.74 3.24
699 742 9.035607 CACTGAATAGTAAGACATGTTGTATCC 57.964 37.037 0.00 0.00 34.74 2.59
700 743 9.803315 TCACTGAATAGTAAGACATGTTGTATC 57.197 33.333 0.00 0.00 34.74 2.24
714 757 8.653338 GCACGTTCTTTTTATCACTGAATAGTA 58.347 33.333 0.00 0.00 34.74 1.82
715 758 7.519002 GCACGTTCTTTTTATCACTGAATAGT 58.481 34.615 0.00 0.00 37.75 2.12
716 759 6.678663 CGCACGTTCTTTTTATCACTGAATAG 59.321 38.462 0.00 0.00 0.00 1.73
717 760 6.530567 CGCACGTTCTTTTTATCACTGAATA 58.469 36.000 0.00 0.00 0.00 1.75
718 761 5.382303 CGCACGTTCTTTTTATCACTGAAT 58.618 37.500 0.00 0.00 0.00 2.57
719 762 4.768145 CGCACGTTCTTTTTATCACTGAA 58.232 39.130 0.00 0.00 0.00 3.02
720 763 3.363575 GCGCACGTTCTTTTTATCACTGA 60.364 43.478 0.30 0.00 0.00 3.41
721 764 2.902484 GCGCACGTTCTTTTTATCACTG 59.098 45.455 0.30 0.00 0.00 3.66
722 765 2.806244 AGCGCACGTTCTTTTTATCACT 59.194 40.909 11.47 0.00 0.00 3.41
723 766 3.183237 AGCGCACGTTCTTTTTATCAC 57.817 42.857 11.47 0.00 0.00 3.06
724 767 3.248841 TGAAGCGCACGTTCTTTTTATCA 59.751 39.130 11.47 0.00 0.00 2.15
725 768 3.805823 TGAAGCGCACGTTCTTTTTATC 58.194 40.909 11.47 0.00 0.00 1.75
726 769 3.889196 TGAAGCGCACGTTCTTTTTAT 57.111 38.095 11.47 0.00 0.00 1.40
727 770 3.677190 TTGAAGCGCACGTTCTTTTTA 57.323 38.095 11.47 0.00 0.00 1.52
728 771 2.553079 TTGAAGCGCACGTTCTTTTT 57.447 40.000 11.47 0.00 0.00 1.94
729 772 2.096819 TCTTTGAAGCGCACGTTCTTTT 59.903 40.909 11.47 0.00 0.00 2.27
730 773 1.668751 TCTTTGAAGCGCACGTTCTTT 59.331 42.857 11.47 0.00 0.00 2.52
731 774 1.295792 TCTTTGAAGCGCACGTTCTT 58.704 45.000 11.47 0.00 0.00 2.52
732 775 1.261619 CTTCTTTGAAGCGCACGTTCT 59.738 47.619 11.47 0.00 0.00 3.01
733 776 1.003866 ACTTCTTTGAAGCGCACGTTC 60.004 47.619 11.47 5.41 0.00 3.95
734 777 1.014352 ACTTCTTTGAAGCGCACGTT 58.986 45.000 11.47 0.00 0.00 3.99
735 778 1.860676 TACTTCTTTGAAGCGCACGT 58.139 45.000 11.47 0.00 0.00 4.49
736 779 2.941891 TTACTTCTTTGAAGCGCACG 57.058 45.000 11.47 0.00 0.00 5.34
737 780 4.147219 ACATTACTTCTTTGAAGCGCAC 57.853 40.909 11.47 3.52 0.00 5.34
738 781 4.829064 AACATTACTTCTTTGAAGCGCA 57.171 36.364 11.47 0.00 0.00 6.09
739 782 6.510746 AAAAACATTACTTCTTTGAAGCGC 57.489 33.333 0.00 0.00 0.00 5.92
761 804 9.778741 GATAATTGATCATGACCACTAGGTAAA 57.221 33.333 0.00 0.00 40.57 2.01
762 805 9.159254 AGATAATTGATCATGACCACTAGGTAA 57.841 33.333 0.00 0.00 42.24 2.85
763 806 8.727100 AGATAATTGATCATGACCACTAGGTA 57.273 34.615 0.00 0.00 42.24 3.08
764 807 7.512058 AGAGATAATTGATCATGACCACTAGGT 59.488 37.037 0.00 0.00 43.85 3.08
765 808 7.905265 AGAGATAATTGATCATGACCACTAGG 58.095 38.462 0.00 0.00 36.98 3.02
766 809 9.853555 GTAGAGATAATTGATCATGACCACTAG 57.146 37.037 0.00 0.00 36.98 2.57
767 810 9.593565 AGTAGAGATAATTGATCATGACCACTA 57.406 33.333 0.00 0.00 36.98 2.74
768 811 8.489676 AGTAGAGATAATTGATCATGACCACT 57.510 34.615 0.00 0.00 36.98 4.00
769 812 7.816995 GGAGTAGAGATAATTGATCATGACCAC 59.183 40.741 0.00 0.00 36.98 4.16
770 813 7.732140 AGGAGTAGAGATAATTGATCATGACCA 59.268 37.037 0.00 0.00 36.98 4.02
771 814 8.133024 AGGAGTAGAGATAATTGATCATGACC 57.867 38.462 0.00 0.00 36.98 4.02
779 822 9.868160 TGAGACATTAGGAGTAGAGATAATTGA 57.132 33.333 0.00 0.00 0.00 2.57
781 824 9.875708 ACTGAGACATTAGGAGTAGAGATAATT 57.124 33.333 0.00 0.00 0.00 1.40
782 825 9.875708 AACTGAGACATTAGGAGTAGAGATAAT 57.124 33.333 0.00 0.00 0.00 1.28
783 826 9.126151 CAACTGAGACATTAGGAGTAGAGATAA 57.874 37.037 0.00 0.00 0.00 1.75
1895 2391 2.668550 GAACGGCGCTTTGTCCCT 60.669 61.111 6.90 0.00 0.00 4.20
2757 3659 2.693797 CAGAACAAGATGTGGTGTGC 57.306 50.000 0.00 0.00 30.36 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.