Multiple sequence alignment - TraesCS5D01G092300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G092300 chr5D 100.000 9085 0 0 1 9085 100924872 100933956 0.000000e+00 16777.0
1 TraesCS5D01G092300 chr5D 92.341 1841 83 23 4521 6311 100548775 100546943 0.000000e+00 2566.0
2 TraesCS5D01G092300 chr5D 92.826 1380 51 16 2182 3527 100551314 100549949 0.000000e+00 1956.0
3 TraesCS5D01G092300 chr5D 85.159 977 105 14 3045 4009 100546940 100545992 0.000000e+00 965.0
4 TraesCS5D01G092300 chr5D 86.341 820 80 16 3708 4513 100928264 100929065 0.000000e+00 865.0
5 TraesCS5D01G092300 chr5D 86.341 820 80 16 3393 4194 100928579 100929384 0.000000e+00 865.0
6 TraesCS5D01G092300 chr5D 92.015 551 39 4 3778 4323 100549293 100548743 0.000000e+00 769.0
7 TraesCS5D01G092300 chr5D 93.381 423 25 3 4576 4997 100545984 100545564 2.790000e-174 623.0
8 TraesCS5D01G092300 chr5D 86.545 550 61 8 3470 4009 100549289 100548743 2.180000e-165 593.0
9 TraesCS5D01G092300 chr5D 91.388 418 20 7 4102 4511 100549287 100548878 7.970000e-155 558.0
10 TraesCS5D01G092300 chr5D 89.267 382 31 6 3512 3883 100549933 100549552 3.840000e-128 470.0
11 TraesCS5D01G092300 chr5D 82.365 499 61 14 4027 4513 100928264 100928747 8.490000e-110 409.0
12 TraesCS5D01G092300 chr5D 79.596 495 75 17 4027 4510 100546601 100546122 1.890000e-86 331.0
13 TraesCS5D01G092300 chr5D 82.154 325 34 13 4142 4457 100549933 100549624 3.250000e-64 257.0
14 TraesCS5D01G092300 chr5D 89.241 158 15 1 8833 8990 528717278 528717433 7.200000e-46 196.0
15 TraesCS5D01G092300 chr5D 89.103 156 16 1 8833 8988 375306176 375306022 9.310000e-45 193.0
16 TraesCS5D01G092300 chr5D 78.947 323 33 21 862 1172 100551777 100551478 4.330000e-43 187.0
17 TraesCS5D01G092300 chr5D 82.323 198 25 7 3393 3583 100549736 100549542 7.300000e-36 163.0
18 TraesCS5D01G092300 chr5D 89.844 128 7 2 4386 4513 100549316 100549195 9.440000e-35 159.0
19 TraesCS5D01G092300 chr5D 84.892 139 11 8 8553 8686 100934206 100934339 2.060000e-26 132.0
20 TraesCS5D01G092300 chr5B 93.733 4404 162 42 4521 8831 109218265 109222647 0.000000e+00 6499.0
21 TraesCS5D01G092300 chr5B 92.785 1982 84 29 1714 3643 109213040 109215014 0.000000e+00 2813.0
22 TraesCS5D01G092300 chr5B 92.489 1824 101 17 4521 6311 108983149 108981329 0.000000e+00 2577.0
23 TraesCS5D01G092300 chr5B 92.356 1753 82 22 2182 3926 108985390 108983682 0.000000e+00 2447.0
24 TraesCS5D01G092300 chr5B 87.473 1365 70 42 329 1609 109211549 109212896 0.000000e+00 1480.0
25 TraesCS5D01G092300 chr5B 84.501 742 89 11 3281 4009 108954614 108953886 0.000000e+00 710.0
26 TraesCS5D01G092300 chr5B 92.827 474 31 2 4525 4997 108953914 108953443 0.000000e+00 684.0
27 TraesCS5D01G092300 chr5B 87.823 542 41 16 3783 4320 109217774 109218294 6.030000e-171 612.0
28 TraesCS5D01G092300 chr5B 90.238 420 25 9 4102 4513 109217775 109218186 1.340000e-147 534.0
29 TraesCS5D01G092300 chr5B 84.899 543 59 12 3708 4244 108984207 108983682 2.250000e-145 527.0
30 TraesCS5D01G092300 chr5B 89.877 405 36 3 3924 4323 108983521 108983117 4.860000e-142 516.0
31 TraesCS5D01G092300 chr5B 89.163 406 39 3 3608 4009 108983521 108983117 1.360000e-137 501.0
32 TraesCS5D01G092300 chr5B 92.920 339 21 3 3778 4115 109215036 109215372 2.950000e-134 490.0
33 TraesCS5D01G092300 chr5B 82.998 547 56 9 3471 4006 109217774 109218294 2.310000e-125 460.0
34 TraesCS5D01G092300 chr5B 81.818 495 64 15 4027 4513 108984207 108983731 8.550000e-105 392.0
35 TraesCS5D01G092300 chr5B 89.568 278 13 7 4242 4511 108983521 108983252 1.130000e-88 339.0
36 TraesCS5D01G092300 chr5B 84.726 347 37 6 4096 4435 109215036 109215373 5.260000e-87 333.0
37 TraesCS5D01G092300 chr5B 87.243 243 16 4 3045 3287 108981326 108981099 7.000000e-66 263.0
38 TraesCS5D01G092300 chr5B 90.196 153 15 0 8831 8983 299602377 299602225 5.560000e-47 200.0
39 TraesCS5D01G092300 chr5B 89.241 158 15 1 8833 8990 665744469 665744624 7.200000e-46 196.0
40 TraesCS5D01G092300 chr5B 78.095 315 29 16 880 1172 108995424 108995128 7.300000e-36 163.0
41 TraesCS5D01G092300 chr5B 82.902 193 13 7 8500 8675 473283190 473283001 1.220000e-33 156.0
42 TraesCS5D01G092300 chr5B 91.250 80 7 0 1637 1716 109212897 109212976 9.640000e-20 110.0
43 TraesCS5D01G092300 chr5B 91.935 62 4 1 9024 9085 473282779 473282719 1.630000e-12 86.1
44 TraesCS5D01G092300 chr5A 95.155 2910 90 18 5816 8676 99418565 99415658 0.000000e+00 4545.0
45 TraesCS5D01G092300 chr5A 93.342 2358 100 21 2178 4513 99422334 99420012 0.000000e+00 3432.0
46 TraesCS5D01G092300 chr5A 95.403 1327 34 8 4521 5821 99419925 99418600 0.000000e+00 2087.0
47 TraesCS5D01G092300 chr5A 86.150 1805 110 62 4 1716 99424692 99422936 0.000000e+00 1820.0
48 TraesCS5D01G092300 chr5A 86.550 1606 112 46 4521 6081 99592680 99594226 0.000000e+00 1674.0
49 TraesCS5D01G092300 chr5A 92.246 748 30 9 2182 2923 99587850 99588575 0.000000e+00 1035.0
50 TraesCS5D01G092300 chr5A 84.947 950 83 28 3393 4323 99420801 99419893 0.000000e+00 907.0
51 TraesCS5D01G092300 chr5A 85.520 808 79 18 3715 4513 99421111 99420333 0.000000e+00 809.0
52 TraesCS5D01G092300 chr5A 91.803 549 39 4 3778 4320 99592162 99592710 0.000000e+00 760.0
53 TraesCS5D01G092300 chr5A 94.877 488 10 4 2925 3412 99588661 99589133 0.000000e+00 749.0
54 TraesCS5D01G092300 chr5A 89.081 577 39 13 3403 3963 99591572 99592140 0.000000e+00 695.0
55 TraesCS5D01G092300 chr5A 95.913 416 16 1 8671 9085 99415630 99415215 0.000000e+00 673.0
56 TraesCS5D01G092300 chr5A 87.044 548 57 8 3470 4006 99592166 99592710 2.810000e-169 606.0
57 TraesCS5D01G092300 chr5A 92.581 310 23 0 4688 4997 99600336 99600645 6.470000e-121 446.0
58 TraesCS5D01G092300 chr5A 85.242 454 24 24 1717 2131 99422865 99422416 2.340000e-115 427.0
59 TraesCS5D01G092300 chr5A 82.009 428 55 13 4042 4457 99591578 99591995 2.430000e-90 344.0
60 TraesCS5D01G092300 chr5A 84.733 262 25 9 3393 3643 99591883 99592140 1.960000e-61 248.0
61 TraesCS5D01G092300 chr5A 89.773 176 16 1 4521 4696 99594771 99594944 3.300000e-54 224.0
62 TraesCS5D01G092300 chr5A 89.241 158 15 1 8833 8990 656872285 656872440 7.200000e-46 196.0
63 TraesCS5D01G092300 chr6B 88.065 930 99 6 6584 7507 442978230 442977307 0.000000e+00 1092.0
64 TraesCS5D01G092300 chr6B 87.823 928 98 7 6583 7504 441861341 441860423 0.000000e+00 1074.0
65 TraesCS5D01G092300 chr6B 89.163 609 52 7 6896 7504 88826779 88826185 0.000000e+00 747.0
66 TraesCS5D01G092300 chr6B 89.407 236 23 2 5598 5832 88827249 88827015 6.900000e-76 296.0
67 TraesCS5D01G092300 chr7B 89.984 609 45 8 6896 7504 687564520 687565112 0.000000e+00 773.0
68 TraesCS5D01G092300 chr7B 88.067 419 26 11 8272 8672 332399586 332399998 8.250000e-130 475.0
69 TraesCS5D01G092300 chr7B 89.407 236 23 2 5598 5832 687564008 687564242 6.900000e-76 296.0
70 TraesCS5D01G092300 chr7B 88.235 153 15 3 8681 8833 332400050 332400199 7.250000e-41 180.0
71 TraesCS5D01G092300 chr7B 83.854 192 11 4 8498 8672 209396741 209396929 2.030000e-36 165.0
72 TraesCS5D01G092300 chr3D 89.655 609 53 4 6896 7504 501135389 501134791 0.000000e+00 767.0
73 TraesCS5D01G092300 chr3D 92.544 228 12 3 6075 6302 501135648 501135426 1.140000e-83 322.0
74 TraesCS5D01G092300 chr3D 88.983 236 23 3 5598 5832 501135895 501135662 1.150000e-73 289.0
75 TraesCS5D01G092300 chr3D 90.066 151 12 3 8684 8834 153510776 153510629 9.310000e-45 193.0
76 TraesCS5D01G092300 chr3D 83.938 193 11 6 8500 8675 153511017 153510828 5.640000e-37 167.0
77 TraesCS5D01G092300 chr3D 95.161 62 2 1 9024 9085 153510606 153510546 7.510000e-16 97.1
78 TraesCS5D01G092300 chr3D 93.548 62 3 1 9024 9085 189777587 189777647 3.490000e-14 91.6
79 TraesCS5D01G092300 chr2B 89.344 610 54 6 6896 7504 711199697 711199098 0.000000e+00 756.0
80 TraesCS5D01G092300 chr2B 91.228 228 18 1 6075 6302 711199959 711199734 8.860000e-80 309.0
81 TraesCS5D01G092300 chr4B 89.070 613 54 7 6896 7504 241713541 241714144 0.000000e+00 749.0
82 TraesCS5D01G092300 chr4B 94.298 228 13 0 6075 6302 241713277 241713504 5.220000e-92 350.0
83 TraesCS5D01G092300 chr4B 89.937 159 14 1 8832 8988 146469215 146469373 4.300000e-48 204.0
84 TraesCS5D01G092300 chr4D 89.952 418 21 5 8272 8672 60872907 60873320 3.760000e-143 520.0
85 TraesCS5D01G092300 chr4D 88.793 116 13 0 8681 8796 60873372 60873487 9.510000e-30 143.0
86 TraesCS5D01G092300 chr6A 93.013 229 15 1 6075 6302 271637315 271637087 5.260000e-87 333.0
87 TraesCS5D01G092300 chr6A 91.083 157 14 0 8833 8989 411770253 411770409 7.150000e-51 213.0
88 TraesCS5D01G092300 chr7D 92.544 228 17 0 6075 6302 176562589 176562362 2.450000e-85 327.0
89 TraesCS5D01G092300 chr7D 90.000 230 21 2 5604 5832 176562831 176562603 6.900000e-76 296.0
90 TraesCS5D01G092300 chr7D 92.857 154 11 0 8830 8983 34757021 34756868 3.300000e-54 224.0
91 TraesCS5D01G092300 chr3B 90.066 151 12 3 8684 8834 225177934 225177787 9.310000e-45 193.0
92 TraesCS5D01G092300 chr3B 83.938 193 11 6 8500 8675 225178175 225177986 5.640000e-37 167.0
93 TraesCS5D01G092300 chr3B 82.105 190 14 7 8500 8672 708715352 708715538 2.640000e-30 145.0
94 TraesCS5D01G092300 chr3B 95.161 62 2 1 9024 9085 225177764 225177704 7.510000e-16 97.1
95 TraesCS5D01G092300 chr3B 91.935 62 4 1 9024 9085 708715764 708715824 1.630000e-12 86.1
96 TraesCS5D01G092300 chr3A 88.961 154 14 3 8681 8834 176144211 176144361 4.330000e-43 187.0
97 TraesCS5D01G092300 chr3A 84.737 190 9 6 8500 8672 176143973 176144159 1.210000e-38 172.0
98 TraesCS5D01G092300 chr3A 95.161 62 2 1 9024 9085 176144384 176144444 7.510000e-16 97.1
99 TraesCS5D01G092300 chr1B 95.833 96 4 0 8319 8414 561641507 561641602 1.220000e-33 156.0
100 TraesCS5D01G092300 chr1B 89.000 100 8 1 8984 9083 497299356 497299260 4.460000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G092300 chr5D 100924872 100933956 9084 False 16777.000000 16777 100.000000 1 9085 1 chr5D.!!$F1 9084
1 TraesCS5D01G092300 chr5D 100545564 100551777 6213 True 738.230769 2566 87.368154 862 6311 13 chr5D.!!$R2 5449
2 TraesCS5D01G092300 chr5D 100928264 100929384 1120 False 713.000000 865 85.015667 3393 4513 3 chr5D.!!$F4 1120
3 TraesCS5D01G092300 chr5B 109211549 109222647 11098 False 1481.222222 6499 89.327333 329 8831 9 chr5B.!!$F2 8502
4 TraesCS5D01G092300 chr5B 108981099 108985390 4291 True 945.250000 2577 88.426625 2182 6311 8 chr5B.!!$R4 4129
5 TraesCS5D01G092300 chr5B 108953443 108954614 1171 True 697.000000 710 88.664000 3281 4997 2 chr5B.!!$R3 1716
6 TraesCS5D01G092300 chr5A 99415215 99424692 9477 True 1837.500000 4545 90.209000 4 9085 8 chr5A.!!$R1 9081
7 TraesCS5D01G092300 chr5A 99587850 99594944 7094 False 703.888889 1674 88.679556 2182 6081 9 chr5A.!!$F3 3899
8 TraesCS5D01G092300 chr6B 442977307 442978230 923 True 1092.000000 1092 88.065000 6584 7507 1 chr6B.!!$R2 923
9 TraesCS5D01G092300 chr6B 441860423 441861341 918 True 1074.000000 1074 87.823000 6583 7504 1 chr6B.!!$R1 921
10 TraesCS5D01G092300 chr6B 88826185 88827249 1064 True 521.500000 747 89.285000 5598 7504 2 chr6B.!!$R3 1906
11 TraesCS5D01G092300 chr7B 687564008 687565112 1104 False 534.500000 773 89.695500 5598 7504 2 chr7B.!!$F3 1906
12 TraesCS5D01G092300 chr7B 332399586 332400199 613 False 327.500000 475 88.151000 8272 8833 2 chr7B.!!$F2 561
13 TraesCS5D01G092300 chr3D 501134791 501135895 1104 True 459.333333 767 90.394000 5598 7504 3 chr3D.!!$R2 1906
14 TraesCS5D01G092300 chr2B 711199098 711199959 861 True 532.500000 756 90.286000 6075 7504 2 chr2B.!!$R1 1429
15 TraesCS5D01G092300 chr4B 241713277 241714144 867 False 549.500000 749 91.684000 6075 7504 2 chr4B.!!$F2 1429
16 TraesCS5D01G092300 chr4D 60872907 60873487 580 False 331.500000 520 89.372500 8272 8796 2 chr4D.!!$F1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.036105 TCCTCGTCCACAGCGTAGTA 60.036 55.000 0.00 0.0 0.00 1.82 F
168 195 0.038310 CCACCTTCTTCTCCCCAACC 59.962 60.000 0.00 0.0 0.00 3.77 F
181 208 0.188834 CCCAACCAACCAAACCCCTA 59.811 55.000 0.00 0.0 0.00 3.53 F
1063 1163 0.242017 GTTGCTGATTTGCTTCCGCT 59.758 50.000 0.00 0.0 36.97 5.52 F
1993 2282 0.166814 CTTCTTGCGCTCCTTTTCCG 59.833 55.000 9.73 0.0 0.00 4.30 F
2289 2643 0.333993 AGATGGGCAAGCAGGACAAT 59.666 50.000 0.00 0.0 0.00 2.71 F
2804 3167 0.538057 CTGTTCCCTGCCTGCTTTCA 60.538 55.000 0.00 0.0 0.00 2.69 F
2831 3194 2.550208 GGGTTCAAGTCGATTGGTCACT 60.550 50.000 0.00 0.0 39.54 3.41 F
2835 3198 2.567169 TCAAGTCGATTGGTCACTGGAT 59.433 45.455 0.00 0.0 39.54 3.41 F
3311 3758 2.567985 GGACCGAAAAGTTGACAGGAA 58.432 47.619 0.00 0.0 0.00 3.36 F
4642 10203 1.002430 TGCAGGCCGGAGATATGAATC 59.998 52.381 5.05 0.0 0.00 2.52 F
5683 11301 3.054878 GCCAACTGCATTTTGAACTGAG 58.945 45.455 9.28 0.0 40.77 3.35 F
7343 13072 0.836400 TGGTTGAGTCCAGTCCTCCC 60.836 60.000 0.00 0.0 33.19 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1434 1573 0.108615 GAGAGAGTGCAAGCGGCTAA 60.109 55.000 1.35 0.00 45.15 3.09 R
1440 1579 0.319900 TCGGTTGAGAGAGTGCAAGC 60.320 55.000 0.00 0.00 38.68 4.01 R
1492 1645 0.599204 TTCGCAAGGAGTGACGGAAC 60.599 55.000 0.00 0.00 36.25 3.62 R
2065 2354 0.657840 GCAGCCAAGGTAGCATAACG 59.342 55.000 0.00 0.00 29.65 3.18 R
3099 3546 0.596577 TCGCCGATATCCTTTCCTCG 59.403 55.000 0.00 0.00 0.00 4.63 R
3311 3758 1.076438 AAGTAGAGGGGGCAAGCTTT 58.924 50.000 0.00 0.00 0.00 3.51 R
3977 9061 1.134128 ACAGCAATATCGCATCCACCA 60.134 47.619 0.00 0.00 0.00 4.17 R
3978 9062 1.597742 ACAGCAATATCGCATCCACC 58.402 50.000 0.00 0.00 0.00 4.61 R
4357 9804 2.102420 AGACACCGAACACTCAATCACA 59.898 45.455 0.00 0.00 0.00 3.58 R
5158 10765 1.140134 TCTGGGCTTTGGGGTTAGCT 61.140 55.000 0.00 0.00 37.54 3.32 R
5697 11315 1.475280 CCATTGAGCCATGGTTCACTG 59.525 52.381 30.27 30.27 36.38 3.66 R
7602 13335 1.208052 CATGTGGAGTCTACAGGTGGG 59.792 57.143 15.03 0.00 0.00 4.61 R
8506 14269 0.475906 AAGAGAAGCAAGCACCAGGT 59.524 50.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.218316 GGGTCTTTGGCGATCGTCT 59.782 57.895 21.85 0.00 0.00 4.18
44 45 1.136984 GTCCTCGTCCACAGCGTAG 59.863 63.158 0.00 0.00 0.00 3.51
45 46 1.303074 TCCTCGTCCACAGCGTAGT 60.303 57.895 0.00 0.00 0.00 2.73
46 47 0.036105 TCCTCGTCCACAGCGTAGTA 60.036 55.000 0.00 0.00 0.00 1.82
47 48 0.098376 CCTCGTCCACAGCGTAGTAC 59.902 60.000 0.00 0.00 0.00 2.73
50 57 0.797249 CGTCCACAGCGTAGTACAGC 60.797 60.000 0.38 5.18 0.00 4.40
53 60 0.458543 CCACAGCGTAGTACAGCAGG 60.459 60.000 15.94 11.63 35.48 4.85
106 113 1.392710 CGTGCCCCGAGGAAGATACT 61.393 60.000 0.00 0.00 39.56 2.12
107 114 1.700955 GTGCCCCGAGGAAGATACTA 58.299 55.000 0.00 0.00 33.47 1.82
108 115 1.340568 GTGCCCCGAGGAAGATACTAC 59.659 57.143 0.00 0.00 33.47 2.73
109 116 0.967662 GCCCCGAGGAAGATACTACC 59.032 60.000 0.00 0.00 33.47 3.18
110 117 1.756690 GCCCCGAGGAAGATACTACCA 60.757 57.143 0.00 0.00 33.47 3.25
123 130 2.038654 TACCACCCACCCCAACCA 60.039 61.111 0.00 0.00 0.00 3.67
127 134 1.381872 CACCCACCCCAACCAAACA 60.382 57.895 0.00 0.00 0.00 2.83
129 136 2.137528 CCCACCCCAACCAAACACC 61.138 63.158 0.00 0.00 0.00 4.16
130 137 1.075600 CCACCCCAACCAAACACCT 60.076 57.895 0.00 0.00 0.00 4.00
160 187 1.597461 GCTACCGCCACCTTCTTCT 59.403 57.895 0.00 0.00 0.00 2.85
162 189 0.175989 CTACCGCCACCTTCTTCTCC 59.824 60.000 0.00 0.00 0.00 3.71
163 190 1.262640 TACCGCCACCTTCTTCTCCC 61.263 60.000 0.00 0.00 0.00 4.30
166 193 1.767692 GCCACCTTCTTCTCCCCAA 59.232 57.895 0.00 0.00 0.00 4.12
167 194 0.609406 GCCACCTTCTTCTCCCCAAC 60.609 60.000 0.00 0.00 0.00 3.77
168 195 0.038310 CCACCTTCTTCTCCCCAACC 59.962 60.000 0.00 0.00 0.00 3.77
169 196 0.771127 CACCTTCTTCTCCCCAACCA 59.229 55.000 0.00 0.00 0.00 3.67
170 197 1.144913 CACCTTCTTCTCCCCAACCAA 59.855 52.381 0.00 0.00 0.00 3.67
171 198 1.145119 ACCTTCTTCTCCCCAACCAAC 59.855 52.381 0.00 0.00 0.00 3.77
172 199 1.547901 CCTTCTTCTCCCCAACCAACC 60.548 57.143 0.00 0.00 0.00 3.77
181 208 0.188834 CCCAACCAACCAAACCCCTA 59.811 55.000 0.00 0.00 0.00 3.53
198 225 0.323451 CTAGCTCCCCACAAAACCCC 60.323 60.000 0.00 0.00 0.00 4.95
201 228 1.850549 CTCCCCACAAAACCCCAGA 59.149 57.895 0.00 0.00 0.00 3.86
213 240 3.357079 CCCAGAACCGCACACTGC 61.357 66.667 0.00 0.00 40.69 4.40
261 288 4.394078 CCGTCAGCGACCGAACGA 62.394 66.667 11.78 0.00 41.33 3.85
265 292 3.175240 CAGCGACCGAACGAGCAG 61.175 66.667 5.50 0.00 35.09 4.24
299 326 1.726533 CGAAGCTACCCCGTCTCTCC 61.727 65.000 0.00 0.00 0.00 3.71
545 602 4.790861 GAACGCGACGGGGTCTCC 62.791 72.222 21.41 0.00 38.54 3.71
631 691 1.672881 CGCAGAGCTTTTAATGGGAGG 59.327 52.381 0.00 0.00 0.00 4.30
632 692 2.680805 CGCAGAGCTTTTAATGGGAGGA 60.681 50.000 0.00 0.00 0.00 3.71
633 693 2.948315 GCAGAGCTTTTAATGGGAGGAG 59.052 50.000 0.00 0.00 0.00 3.69
638 698 2.242452 GCTTTTAATGGGAGGAGGAGGT 59.758 50.000 0.00 0.00 0.00 3.85
736 804 2.415357 GCTGTGCTAGAGAGACAGTGAC 60.415 54.545 0.00 0.00 39.48 3.67
875 954 5.441500 ACTAGCAGCAGTCTACATAAGAGA 58.558 41.667 0.00 0.00 33.88 3.10
876 955 4.916983 AGCAGCAGTCTACATAAGAGAG 57.083 45.455 0.00 0.00 33.88 3.20
923 1002 2.354656 GTGTGTGTGAGCGAGCGA 60.355 61.111 0.00 0.00 0.00 4.93
925 1004 2.807045 GTGTGTGAGCGAGCGAGG 60.807 66.667 0.00 0.00 0.00 4.63
960 1039 0.250338 GTTTCTCGGGGACAAGCAGT 60.250 55.000 0.00 0.00 0.00 4.40
1022 1109 2.284258 AGAGGTGAGCGAGGCCTT 60.284 61.111 6.77 0.00 31.89 4.35
1041 1137 3.722295 CGTCGCCGGCATTGTTGT 61.722 61.111 28.98 0.00 0.00 3.32
1056 1152 2.538437 TGTTGTGTGTTGCTGATTTGC 58.462 42.857 0.00 0.00 0.00 3.68
1063 1163 0.242017 GTTGCTGATTTGCTTCCGCT 59.758 50.000 0.00 0.00 36.97 5.52
1109 1213 5.047021 TCGGGGTATGAGATGAGATGATTTC 60.047 44.000 0.00 0.00 0.00 2.17
1215 1324 1.532238 GGAGGGAGGTGGTAATGGC 59.468 63.158 0.00 0.00 0.00 4.40
1246 1361 1.150536 GTGGTTCTGCTGGGTTGGA 59.849 57.895 0.00 0.00 0.00 3.53
1256 1371 1.165270 CTGGGTTGGATCGTTGGTTC 58.835 55.000 0.00 0.00 0.00 3.62
1292 1408 1.077005 TGGGATTGGGGTTTTCTCCTG 59.923 52.381 0.00 0.00 42.05 3.86
1322 1444 2.666317 CTGGGGTTTTCAGAGGTTTGT 58.334 47.619 0.00 0.00 34.36 2.83
1434 1573 2.002586 CAGTTCGCCATTTCAGTCGAT 58.997 47.619 0.00 0.00 0.00 3.59
1438 1577 2.201732 TCGCCATTTCAGTCGATTAGC 58.798 47.619 0.00 0.00 0.00 3.09
1439 1578 1.261619 CGCCATTTCAGTCGATTAGCC 59.738 52.381 0.00 0.00 0.00 3.93
1440 1579 1.261619 GCCATTTCAGTCGATTAGCCG 59.738 52.381 0.00 0.00 0.00 5.52
1441 1580 1.261619 CCATTTCAGTCGATTAGCCGC 59.738 52.381 0.00 0.00 0.00 6.53
1443 1582 2.380084 TTTCAGTCGATTAGCCGCTT 57.620 45.000 0.00 0.00 0.00 4.68
1445 1584 0.806102 TCAGTCGATTAGCCGCTTGC 60.806 55.000 0.00 0.00 41.71 4.01
1446 1585 1.083806 CAGTCGATTAGCCGCTTGCA 61.084 55.000 0.00 0.00 44.83 4.08
1447 1586 1.084370 AGTCGATTAGCCGCTTGCAC 61.084 55.000 0.00 0.00 44.83 4.57
1492 1645 2.205022 TTGCTTCAGGGGATCAAGTG 57.795 50.000 0.00 0.00 0.00 3.16
1496 1649 2.716217 CTTCAGGGGATCAAGTGTTCC 58.284 52.381 0.00 0.44 34.05 3.62
1555 1708 2.858787 AGTTTTTCCCCTGGTTTCCA 57.141 45.000 0.00 0.00 0.00 3.53
1611 1767 6.160664 CAAATGCTGCAAGTTAATTTGAGG 57.839 37.500 14.30 6.87 40.53 3.86
1612 1768 3.302365 TGCTGCAAGTTAATTTGAGGC 57.698 42.857 14.30 15.19 35.30 4.70
1613 1769 2.029110 TGCTGCAAGTTAATTTGAGGCC 60.029 45.455 14.30 0.00 35.30 5.19
1614 1770 2.867429 CTGCAAGTTAATTTGAGGCCG 58.133 47.619 14.30 0.00 0.00 6.13
1615 1771 2.487762 CTGCAAGTTAATTTGAGGCCGA 59.512 45.455 14.30 0.00 0.00 5.54
1616 1772 3.088532 TGCAAGTTAATTTGAGGCCGAT 58.911 40.909 14.30 0.00 0.00 4.18
1617 1773 3.509575 TGCAAGTTAATTTGAGGCCGATT 59.490 39.130 14.30 0.00 0.00 3.34
1618 1774 4.021544 TGCAAGTTAATTTGAGGCCGATTT 60.022 37.500 14.30 0.00 0.00 2.17
1619 1775 4.562789 GCAAGTTAATTTGAGGCCGATTTC 59.437 41.667 14.30 0.00 0.00 2.17
1620 1776 4.983671 AGTTAATTTGAGGCCGATTTCC 57.016 40.909 0.00 0.00 0.00 3.13
1621 1777 4.600062 AGTTAATTTGAGGCCGATTTCCT 58.400 39.130 0.00 0.00 36.46 3.36
1622 1778 5.016831 AGTTAATTTGAGGCCGATTTCCTT 58.983 37.500 0.00 0.00 33.24 3.36
1623 1779 5.125578 AGTTAATTTGAGGCCGATTTCCTTC 59.874 40.000 0.00 0.00 33.24 3.46
1624 1780 2.879103 TTTGAGGCCGATTTCCTTCT 57.121 45.000 0.00 0.00 33.24 2.85
1625 1781 2.403252 TTGAGGCCGATTTCCTTCTC 57.597 50.000 0.00 0.00 33.24 2.87
1626 1782 1.275666 TGAGGCCGATTTCCTTCTCA 58.724 50.000 0.00 0.00 33.24 3.27
1627 1783 1.208052 TGAGGCCGATTTCCTTCTCAG 59.792 52.381 0.00 0.00 33.24 3.35
1628 1784 1.208293 GAGGCCGATTTCCTTCTCAGT 59.792 52.381 0.00 0.00 33.24 3.41
1629 1785 1.065854 AGGCCGATTTCCTTCTCAGTG 60.066 52.381 0.00 0.00 0.00 3.66
1630 1786 0.729690 GCCGATTTCCTTCTCAGTGC 59.270 55.000 0.00 0.00 0.00 4.40
1631 1787 1.945819 GCCGATTTCCTTCTCAGTGCA 60.946 52.381 0.00 0.00 0.00 4.57
1632 1788 2.636830 CCGATTTCCTTCTCAGTGCAT 58.363 47.619 0.00 0.00 0.00 3.96
1633 1789 3.012518 CCGATTTCCTTCTCAGTGCATT 58.987 45.455 0.00 0.00 0.00 3.56
1750 1977 0.250901 ATTTGACGAGGCAGGCACTT 60.251 50.000 0.00 0.00 34.60 3.16
1961 2250 1.179814 AGTGGACCGAGCTTTCGTCT 61.180 55.000 8.21 0.00 0.00 4.18
1972 2261 0.436531 CTTTCGTCTCGTCTGCTTGC 59.563 55.000 0.00 0.00 0.00 4.01
1993 2282 0.166814 CTTCTTGCGCTCCTTTTCCG 59.833 55.000 9.73 0.00 0.00 4.30
2000 2289 1.206831 GCTCCTTTTCCGTTGCGTC 59.793 57.895 0.00 0.00 0.00 5.19
2064 2353 3.007920 CCTGCAGACTGCCCCTCT 61.008 66.667 24.33 0.00 44.23 3.69
2065 2354 2.583520 CTGCAGACTGCCCCTCTC 59.416 66.667 24.33 0.00 44.23 3.20
2066 2355 3.368190 CTGCAGACTGCCCCTCTCG 62.368 68.421 24.33 1.03 44.23 4.04
2124 2429 3.562141 TGTCATGTTGTTTTCGATCGGTT 59.438 39.130 16.41 0.00 0.00 4.44
2125 2430 4.035792 TGTCATGTTGTTTTCGATCGGTTT 59.964 37.500 16.41 0.00 0.00 3.27
2126 2431 5.236695 TGTCATGTTGTTTTCGATCGGTTTA 59.763 36.000 16.41 0.00 0.00 2.01
2127 2432 5.562623 GTCATGTTGTTTTCGATCGGTTTAC 59.437 40.000 16.41 9.14 0.00 2.01
2128 2433 4.118023 TGTTGTTTTCGATCGGTTTACG 57.882 40.909 16.41 0.00 46.11 3.18
2129 2434 3.555139 TGTTGTTTTCGATCGGTTTACGT 59.445 39.130 16.41 0.00 44.69 3.57
2130 2435 4.136678 GTTGTTTTCGATCGGTTTACGTC 58.863 43.478 16.41 3.03 44.69 4.34
2131 2436 3.641648 TGTTTTCGATCGGTTTACGTCT 58.358 40.909 16.41 0.00 44.69 4.18
2132 2437 3.670055 TGTTTTCGATCGGTTTACGTCTC 59.330 43.478 16.41 0.00 44.69 3.36
2133 2438 2.163826 TTCGATCGGTTTACGTCTCG 57.836 50.000 16.41 0.00 44.19 4.04
2134 2439 1.078709 TCGATCGGTTTACGTCTCGT 58.921 50.000 16.41 0.00 43.69 4.18
2135 2440 1.464608 TCGATCGGTTTACGTCTCGTT 59.535 47.619 16.41 0.00 43.69 3.85
2175 2527 4.507756 GGAGCAATTTTCTGGTGTCAAAAC 59.492 41.667 0.00 0.00 0.00 2.43
2176 2528 5.343307 AGCAATTTTCTGGTGTCAAAACT 57.657 34.783 0.00 0.00 0.00 2.66
2289 2643 0.333993 AGATGGGCAAGCAGGACAAT 59.666 50.000 0.00 0.00 0.00 2.71
2496 2850 3.885521 CTCGACGGGGAGTACGGC 61.886 72.222 0.00 0.00 35.62 5.68
2613 2967 0.539669 TCTCAGTCTCCAGGAACGCA 60.540 55.000 0.00 0.00 0.00 5.24
2804 3167 0.538057 CTGTTCCCTGCCTGCTTTCA 60.538 55.000 0.00 0.00 0.00 2.69
2820 3183 3.003793 GCTTTCACTTCAGGGTTCAAGTC 59.996 47.826 0.00 0.00 30.06 3.01
2831 3194 2.550208 GGGTTCAAGTCGATTGGTCACT 60.550 50.000 0.00 0.00 39.54 3.41
2835 3198 2.567169 TCAAGTCGATTGGTCACTGGAT 59.433 45.455 0.00 0.00 39.54 3.41
3099 3546 3.951769 AATGCTGCTCCTGGTGGCC 62.952 63.158 0.00 0.00 0.00 5.36
3311 3758 2.567985 GGACCGAAAAGTTGACAGGAA 58.432 47.619 0.00 0.00 0.00 3.36
3813 6974 6.237648 GCATTGCACATGAAATTAGTTGCTAC 60.238 38.462 3.15 0.00 0.00 3.58
3842 8137 7.112122 TGCCATGAAGTTAAGTGAGTAATCAT 58.888 34.615 0.00 0.00 0.00 2.45
3953 8412 9.831054 CGCTTTGTTTTTACGTATTATCTAGAG 57.169 33.333 0.00 0.00 0.00 2.43
3978 9062 6.627690 CAGCTCTGCATTTTCTTATGTTTG 57.372 37.500 0.00 0.00 0.00 2.93
3980 9064 5.244626 AGCTCTGCATTTTCTTATGTTTGGT 59.755 36.000 0.00 0.00 0.00 3.67
3981 9065 5.346822 GCTCTGCATTTTCTTATGTTTGGTG 59.653 40.000 0.00 0.00 0.00 4.17
3983 9067 5.538053 TCTGCATTTTCTTATGTTTGGTGGA 59.462 36.000 0.00 0.00 0.00 4.02
3986 9070 5.063817 GCATTTTCTTATGTTTGGTGGATGC 59.936 40.000 0.00 0.00 0.00 3.91
4098 9376 7.915923 CAGAGACTTTTCCCTTTTAAACACTTC 59.084 37.037 0.00 0.00 0.00 3.01
4099 9377 7.834681 AGAGACTTTTCCCTTTTAAACACTTCT 59.165 33.333 0.00 0.00 0.00 2.85
4100 9378 7.772166 AGACTTTTCCCTTTTAAACACTTCTG 58.228 34.615 0.00 0.00 0.00 3.02
4101 9379 6.873997 ACTTTTCCCTTTTAAACACTTCTGG 58.126 36.000 0.00 0.00 0.00 3.86
4102 9380 6.666113 ACTTTTCCCTTTTAAACACTTCTGGA 59.334 34.615 0.00 0.00 0.00 3.86
4103 9381 7.344612 ACTTTTCCCTTTTAAACACTTCTGGAT 59.655 33.333 0.00 0.00 0.00 3.41
4104 9382 7.669089 TTTCCCTTTTAAACACTTCTGGATT 57.331 32.000 0.00 0.00 0.00 3.01
4105 9383 7.669089 TTCCCTTTTAAACACTTCTGGATTT 57.331 32.000 0.00 0.00 0.00 2.17
4106 9384 7.284919 TCCCTTTTAAACACTTCTGGATTTC 57.715 36.000 0.00 0.00 0.00 2.17
4107 9385 6.266786 TCCCTTTTAAACACTTCTGGATTTCC 59.733 38.462 0.00 0.00 0.00 3.13
4108 9386 6.041523 CCCTTTTAAACACTTCTGGATTTCCA 59.958 38.462 0.00 0.00 45.30 3.53
4109 9387 7.256296 CCCTTTTAAACACTTCTGGATTTCCAT 60.256 37.037 0.00 0.00 46.46 3.41
4110 9388 8.150296 CCTTTTAAACACTTCTGGATTTCCATT 58.850 33.333 0.00 0.00 46.46 3.16
4111 9389 8.885494 TTTTAAACACTTCTGGATTTCCATTG 57.115 30.769 0.00 0.00 46.46 2.82
4112 9390 4.525912 AACACTTCTGGATTTCCATTGC 57.474 40.909 0.00 0.00 46.46 3.56
4113 9391 3.499338 ACACTTCTGGATTTCCATTGCA 58.501 40.909 0.00 0.00 46.46 4.08
4114 9392 3.256631 ACACTTCTGGATTTCCATTGCAC 59.743 43.478 0.00 0.00 46.46 4.57
4115 9393 3.508793 CACTTCTGGATTTCCATTGCACT 59.491 43.478 0.00 0.00 46.46 4.40
4116 9394 4.021719 CACTTCTGGATTTCCATTGCACTT 60.022 41.667 0.00 0.00 46.46 3.16
4177 9456 8.635765 AGTAATCAATGTGTGTAATTGAGGTT 57.364 30.769 5.24 0.00 44.81 3.50
4372 9819 8.506140 AAATTTACAATGTGATTGAGTGTTCG 57.494 30.769 0.00 0.00 42.83 3.95
4624 10185 3.852286 TGCAATGATTGATTCCTTGTGC 58.148 40.909 9.76 0.00 33.79 4.57
4642 10203 1.002430 TGCAGGCCGGAGATATGAATC 59.998 52.381 5.05 0.00 0.00 2.52
4769 10353 4.802999 CCAAGGTGCTCTTCTTCAAAATC 58.197 43.478 0.00 0.00 32.41 2.17
5030 10637 9.757227 TGACTAATTGGTATTTTGTTTCTTTGG 57.243 29.630 0.00 0.00 0.00 3.28
5158 10765 3.395639 ACGACTTCTTTTGCGTTATGGA 58.604 40.909 0.00 0.00 32.42 3.41
5398 11006 8.443160 TGAGTTCGCAAATAAAACATCTCTTAG 58.557 33.333 0.00 0.00 0.00 2.18
5676 11294 4.033587 GCATATCAAGCCAACTGCATTTTG 59.966 41.667 0.00 0.00 44.83 2.44
5683 11301 3.054878 GCCAACTGCATTTTGAACTGAG 58.945 45.455 9.28 0.00 40.77 3.35
5697 11315 7.883229 TTTGAACTGAGTTTTGTTCCTTTTC 57.117 32.000 0.00 0.00 41.10 2.29
5760 11378 2.234143 AGAAAGGCACAAAGAGCTTCC 58.766 47.619 0.00 0.00 0.00 3.46
5763 11381 2.335712 GGCACAAAGAGCTTCCGGG 61.336 63.158 0.00 0.00 0.00 5.73
5959 11643 3.505480 TTCGGGTTAAAAGTAAGGGCA 57.495 42.857 0.00 0.00 0.00 5.36
6031 11717 8.642432 CATCCTCTATCTGTATTACCAAGTGAA 58.358 37.037 0.00 0.00 0.00 3.18
6168 11859 7.963532 ACGATGGTATAGTTTCATAATCCTGT 58.036 34.615 0.00 0.00 0.00 4.00
6262 11953 6.202937 CGTACCTTAGCAGATTCTTCAGTAG 58.797 44.000 0.00 0.00 0.00 2.57
6351 12042 4.306600 AGGCTTTGGCTTTGTAAAATTCG 58.693 39.130 0.00 0.00 33.67 3.34
6755 12452 6.035542 GCTATCCTAAGCTAAGCGATTTCATC 59.964 42.308 0.00 0.00 39.50 2.92
7143 12846 5.063186 CCAAAGTCTGATTTGATCGAGTCAG 59.937 44.000 23.34 23.34 41.71 3.51
7254 12958 3.994392 TGCACCTACAAAGAAACTCGATC 59.006 43.478 0.00 0.00 0.00 3.69
7343 13072 0.836400 TGGTTGAGTCCAGTCCTCCC 60.836 60.000 0.00 0.00 33.19 4.30
7414 13143 1.004862 TCAACCCAGACCAACAACACA 59.995 47.619 0.00 0.00 0.00 3.72
7481 13210 4.157289 AGCTGCGACAATGAAATGAGATTT 59.843 37.500 0.00 0.00 34.64 2.17
7521 13250 5.245526 CAGTGGGACAAGTACCTAGTAAGTT 59.754 44.000 2.65 0.00 44.16 2.66
7538 13267 3.510531 AGTTCCCCCTTCTTCTGTTTC 57.489 47.619 0.00 0.00 0.00 2.78
7539 13268 2.783510 AGTTCCCCCTTCTTCTGTTTCA 59.216 45.455 0.00 0.00 0.00 2.69
7552 13284 1.342174 CTGTTTCACCTTGCTTGCCAT 59.658 47.619 0.00 0.00 0.00 4.40
7581 13313 3.871485 AGGCTCAGAATCATGTCTTGAC 58.129 45.455 0.00 0.00 37.11 3.18
7596 13329 5.592054 TGTCTTGACTCTTGACTAACACAG 58.408 41.667 2.35 0.00 0.00 3.66
7602 13335 6.273825 TGACTCTTGACTAACACAGTTCTTC 58.726 40.000 0.00 0.00 37.72 2.87
7633 13374 1.632409 ACTCCACATGCCAAGAGTGAT 59.368 47.619 6.70 0.00 38.15 3.06
7657 13398 2.168947 CATCATATGCCGCTCCTGC 58.831 57.895 0.00 0.00 0.00 4.85
7776 13517 0.472734 AGTGGAGTCAAGTCTGCCCT 60.473 55.000 0.00 0.00 0.00 5.19
7838 13579 3.441572 TCTCAGCAGCTAAAATTTGCTCC 59.558 43.478 0.00 0.00 45.75 4.70
7842 13583 2.672195 GCAGCTAAAATTTGCTCCGCTT 60.672 45.455 0.23 0.00 37.15 4.68
7843 13584 3.174375 CAGCTAAAATTTGCTCCGCTTC 58.826 45.455 0.23 0.00 37.15 3.86
7844 13585 2.819608 AGCTAAAATTTGCTCCGCTTCA 59.180 40.909 0.00 0.00 34.19 3.02
7846 13587 2.438868 AAAATTTGCTCCGCTTCACC 57.561 45.000 0.00 0.00 0.00 4.02
7856 13606 1.071542 TCCGCTTCACCACATCTGAAA 59.928 47.619 0.00 0.00 0.00 2.69
7861 13611 4.320421 CGCTTCACCACATCTGAAATCAAA 60.320 41.667 0.00 0.00 0.00 2.69
7903 13653 2.124983 CACGCAGGGAGTCATGGG 60.125 66.667 9.30 9.30 42.20 4.00
7905 13655 4.864334 CGCAGGGAGTCATGGGGC 62.864 72.222 0.00 0.00 34.61 5.80
7919 13669 4.933064 GGGCGCGTCTCGGATCAG 62.933 72.222 11.94 0.00 38.94 2.90
8025 13775 2.997315 TCCTGGCCTCGGTGACAG 60.997 66.667 3.32 1.38 0.00 3.51
8087 13837 3.826729 ACTTCAAGTTTGGTCCATAAGGC 59.173 43.478 0.00 0.00 33.74 4.35
8146 13901 2.383245 ATAAGGCAGGCGATCCCACG 62.383 60.000 3.45 0.00 35.39 4.94
8158 13913 0.978146 ATCCCACGGACTGAAGGAGG 60.978 60.000 3.91 0.00 32.98 4.30
8193 13948 1.396301 CCTTCGATGTTCTGAGCTTGC 59.604 52.381 0.00 0.00 0.00 4.01
8462 14225 7.295322 TGGATCCTTGTCAGTTATATCTCTG 57.705 40.000 14.23 1.94 0.00 3.35
8480 14243 2.587247 GGGTGAGCAGTGCTGGAGA 61.587 63.158 25.35 0.00 39.88 3.71
8485 14248 0.450983 GAGCAGTGCTGGAGATTTGC 59.549 55.000 25.35 0.00 39.88 3.68
8486 14249 0.251033 AGCAGTGCTGGAGATTTGCA 60.251 50.000 18.98 0.00 37.57 4.08
8492 14255 3.322828 AGTGCTGGAGATTTGCAATTTGT 59.677 39.130 0.00 0.00 38.50 2.83
8546 14309 7.726291 TCTCTTTTGTATGGGTTGGTTGAATTA 59.274 33.333 0.00 0.00 0.00 1.40
8548 14311 8.145122 TCTTTTGTATGGGTTGGTTGAATTAAC 58.855 33.333 0.00 0.00 38.60 2.01
8752 14575 4.006319 AGAGGCAAGTATGTGCTTTCTTC 58.994 43.478 0.00 0.00 44.31 2.87
8842 14680 4.642437 CAGCAGTATGTTCTACTCTCTCCA 59.358 45.833 0.00 0.00 39.31 3.86
8845 14683 6.382570 AGCAGTATGTTCTACTCTCTCCATTT 59.617 38.462 0.00 0.00 39.31 2.32
8894 14733 8.827177 TTTTGTGAATCGGATGTATATAGACC 57.173 34.615 0.00 0.00 0.00 3.85
8896 14735 5.124936 TGTGAATCGGATGTATATAGACCCG 59.875 44.000 6.33 6.33 38.41 5.28
8928 14767 0.671472 TGCTCACTCATTGCAGTCCG 60.671 55.000 0.00 0.00 32.55 4.79
8983 14822 3.938963 TCATATTTGTGAACGGAAGGAGC 59.061 43.478 0.00 0.00 0.00 4.70
8987 14826 2.270352 TGTGAACGGAAGGAGCATTT 57.730 45.000 0.00 0.00 0.00 2.32
9001 14840 6.916360 AGGAGCATTTGAAATGGAAACTTA 57.084 33.333 18.52 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.582436 GATCGCCAAAGACCCGGA 59.418 61.111 0.73 0.00 0.00 5.14
3 4 2.890474 CGATCGCCAAAGACCCGG 60.890 66.667 0.26 0.00 0.00 5.73
4 5 2.125673 ACGATCGCCAAAGACCCG 60.126 61.111 16.60 0.00 0.00 5.28
5 6 0.391263 AAGACGATCGCCAAAGACCC 60.391 55.000 16.60 0.00 0.00 4.46
6 7 1.128692 CAAAGACGATCGCCAAAGACC 59.871 52.381 16.60 0.00 0.00 3.85
7 8 1.798813 ACAAAGACGATCGCCAAAGAC 59.201 47.619 16.60 0.00 0.00 3.01
8 9 2.066262 GACAAAGACGATCGCCAAAGA 58.934 47.619 16.60 0.00 0.00 2.52
9 10 1.128692 GGACAAAGACGATCGCCAAAG 59.871 52.381 16.60 5.46 0.00 2.77
10 11 1.153353 GGACAAAGACGATCGCCAAA 58.847 50.000 16.60 0.00 0.00 3.28
23 24 1.300620 CGCTGTGGACGAGGACAAA 60.301 57.895 0.00 0.00 0.00 2.83
44 45 0.893447 AGTTCGTACCCCTGCTGTAC 59.107 55.000 0.00 0.00 36.15 2.90
45 46 1.180029 GAGTTCGTACCCCTGCTGTA 58.820 55.000 0.00 0.00 0.00 2.74
46 47 1.542187 GGAGTTCGTACCCCTGCTGT 61.542 60.000 0.00 0.00 0.00 4.40
47 48 1.218316 GGAGTTCGTACCCCTGCTG 59.782 63.158 0.00 0.00 0.00 4.41
50 57 1.189524 TGGTGGAGTTCGTACCCCTG 61.190 60.000 0.00 0.00 33.51 4.45
53 60 0.393820 TGTTGGTGGAGTTCGTACCC 59.606 55.000 0.00 0.00 33.51 3.69
106 113 1.294426 TTTGGTTGGGGTGGGTGGTA 61.294 55.000 0.00 0.00 0.00 3.25
107 114 2.637640 TTTGGTTGGGGTGGGTGGT 61.638 57.895 0.00 0.00 0.00 4.16
108 115 2.137528 GTTTGGTTGGGGTGGGTGG 61.138 63.158 0.00 0.00 0.00 4.61
109 116 1.381872 TGTTTGGTTGGGGTGGGTG 60.382 57.895 0.00 0.00 0.00 4.61
110 117 1.382009 GTGTTTGGTTGGGGTGGGT 60.382 57.895 0.00 0.00 0.00 4.51
123 130 2.590575 CGTGCGTGGGAGGTGTTT 60.591 61.111 0.00 0.00 0.00 2.83
144 171 1.262640 GGGAGAAGAAGGTGGCGGTA 61.263 60.000 0.00 0.00 0.00 4.02
158 185 0.105913 GGTTTGGTTGGTTGGGGAGA 60.106 55.000 0.00 0.00 0.00 3.71
160 187 1.075151 GGGTTTGGTTGGTTGGGGA 60.075 57.895 0.00 0.00 0.00 4.81
162 189 0.188834 TAGGGGTTTGGTTGGTTGGG 59.811 55.000 0.00 0.00 0.00 4.12
163 190 1.627864 CTAGGGGTTTGGTTGGTTGG 58.372 55.000 0.00 0.00 0.00 3.77
166 193 0.404426 GAGCTAGGGGTTTGGTTGGT 59.596 55.000 0.00 0.00 0.00 3.67
167 194 0.323451 GGAGCTAGGGGTTTGGTTGG 60.323 60.000 0.00 0.00 0.00 3.77
168 195 0.323451 GGGAGCTAGGGGTTTGGTTG 60.323 60.000 0.00 0.00 0.00 3.77
169 196 1.506907 GGGGAGCTAGGGGTTTGGTT 61.507 60.000 0.00 0.00 0.00 3.67
170 197 1.929088 GGGGAGCTAGGGGTTTGGT 60.929 63.158 0.00 0.00 0.00 3.67
171 198 1.928567 TGGGGAGCTAGGGGTTTGG 60.929 63.158 0.00 0.00 0.00 3.28
172 199 1.303282 GTGGGGAGCTAGGGGTTTG 59.697 63.158 0.00 0.00 0.00 2.93
181 208 2.371897 CTGGGGTTTTGTGGGGAGCT 62.372 60.000 0.00 0.00 0.00 4.09
198 225 2.591429 TGGCAGTGTGCGGTTCTG 60.591 61.111 0.00 0.00 46.21 3.02
242 269 4.353437 GTTCGGTCGCTGACGGGT 62.353 66.667 13.28 0.00 40.63 5.28
255 282 1.560004 TTTCTGCTGCTGCTCGTTCG 61.560 55.000 17.00 0.00 40.48 3.95
260 287 0.520847 GGAGTTTTCTGCTGCTGCTC 59.479 55.000 17.00 3.83 40.48 4.26
261 288 0.892814 GGGAGTTTTCTGCTGCTGCT 60.893 55.000 17.00 0.00 40.48 4.24
265 292 0.519077 CTTCGGGAGTTTTCTGCTGC 59.481 55.000 0.00 0.00 43.08 5.25
299 326 1.157870 GCTCGTCGAGGAGAGAGAGG 61.158 65.000 33.11 10.96 36.16 3.69
352 383 2.765807 ATGTCAGAGCCGAGGGGG 60.766 66.667 0.00 0.00 39.58 5.40
385 416 2.358737 CGCTTTGTCGCCTTCCCT 60.359 61.111 0.00 0.00 0.00 4.20
631 691 3.330720 CCACCCCACCACCTCCTC 61.331 72.222 0.00 0.00 0.00 3.71
736 804 3.406200 CTGCCTGTCCCTCCCTGG 61.406 72.222 0.00 0.00 0.00 4.45
923 1002 4.150454 CCCTCTCCGCCCTCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
925 1004 3.986116 AACCCCTCTCCGCCCTCTC 62.986 68.421 0.00 0.00 0.00 3.20
1038 1125 3.446799 GAAGCAAATCAGCAACACACAA 58.553 40.909 0.00 0.00 36.85 3.33
1041 1137 1.001487 CGGAAGCAAATCAGCAACACA 60.001 47.619 0.00 0.00 36.85 3.72
1056 1152 1.346365 TCGAATCGAACAAGCGGAAG 58.654 50.000 1.57 0.00 31.06 3.46
1133 1238 1.208870 CGCGAGAGATCATCGGAGG 59.791 63.158 18.40 0.00 40.50 4.30
1215 1324 0.589708 GAACCACCGAAAACGAAGGG 59.410 55.000 0.00 0.00 0.00 3.95
1246 1361 1.571215 GAAACGGCGGAACCAACGAT 61.571 55.000 13.24 0.00 39.03 3.73
1292 1408 3.569200 AAACCCCAGCGGAGAAGGC 62.569 63.158 0.00 0.00 34.64 4.35
1322 1444 4.646877 GGAAACACCGGCCGGGAA 62.647 66.667 44.99 0.00 39.97 3.97
1434 1573 0.108615 GAGAGAGTGCAAGCGGCTAA 60.109 55.000 1.35 0.00 45.15 3.09
1438 1577 1.294659 GGTTGAGAGAGTGCAAGCGG 61.295 60.000 0.00 0.00 33.57 5.52
1439 1578 2.157421 GGTTGAGAGAGTGCAAGCG 58.843 57.895 0.00 0.00 33.57 4.68
1440 1579 0.319900 TCGGTTGAGAGAGTGCAAGC 60.320 55.000 0.00 0.00 38.68 4.01
1441 1580 1.270826 TCTCGGTTGAGAGAGTGCAAG 59.729 52.381 0.00 0.00 46.25 4.01
1443 1582 3.036431 TCTCGGTTGAGAGAGTGCA 57.964 52.632 0.00 0.00 46.25 4.57
1492 1645 0.599204 TTCGCAAGGAGTGACGGAAC 60.599 55.000 0.00 0.00 36.25 3.62
1496 1649 2.027625 GGGTTCGCAAGGAGTGACG 61.028 63.158 0.00 0.00 36.25 4.35
1555 1708 3.772025 TCAAAAACAAACCACCACTGGAT 59.228 39.130 0.71 0.00 40.55 3.41
1597 1753 5.102313 GGAAATCGGCCTCAAATTAACTTG 58.898 41.667 0.00 0.00 0.00 3.16
1609 1765 1.065854 CACTGAGAAGGAAATCGGCCT 60.066 52.381 0.00 0.00 37.35 5.19
1611 1767 0.729690 GCACTGAGAAGGAAATCGGC 59.270 55.000 0.00 0.00 0.00 5.54
1612 1768 2.099141 TGCACTGAGAAGGAAATCGG 57.901 50.000 0.00 0.00 0.00 4.18
1613 1769 4.691860 AAATGCACTGAGAAGGAAATCG 57.308 40.909 0.00 0.00 0.00 3.34
1614 1770 5.649831 ACCTAAATGCACTGAGAAGGAAATC 59.350 40.000 0.00 0.00 0.00 2.17
1615 1771 5.416952 CACCTAAATGCACTGAGAAGGAAAT 59.583 40.000 0.00 0.00 0.00 2.17
1616 1772 4.761739 CACCTAAATGCACTGAGAAGGAAA 59.238 41.667 0.00 0.00 0.00 3.13
1617 1773 4.202461 ACACCTAAATGCACTGAGAAGGAA 60.202 41.667 0.00 0.00 0.00 3.36
1618 1774 3.327757 ACACCTAAATGCACTGAGAAGGA 59.672 43.478 0.00 0.00 0.00 3.36
1619 1775 3.679389 ACACCTAAATGCACTGAGAAGG 58.321 45.455 0.00 0.00 0.00 3.46
1620 1776 4.614535 GCAACACCTAAATGCACTGAGAAG 60.615 45.833 0.00 0.00 39.81 2.85
1621 1777 3.253188 GCAACACCTAAATGCACTGAGAA 59.747 43.478 0.00 0.00 39.81 2.87
1622 1778 2.813754 GCAACACCTAAATGCACTGAGA 59.186 45.455 0.00 0.00 39.81 3.27
1623 1779 2.816087 AGCAACACCTAAATGCACTGAG 59.184 45.455 0.00 0.00 42.45 3.35
1624 1780 2.862541 AGCAACACCTAAATGCACTGA 58.137 42.857 0.00 0.00 42.45 3.41
1625 1781 3.648339 AAGCAACACCTAAATGCACTG 57.352 42.857 0.00 0.00 42.45 3.66
1626 1782 3.243839 CCAAAGCAACACCTAAATGCACT 60.244 43.478 0.00 0.00 42.45 4.40
1627 1783 3.059166 CCAAAGCAACACCTAAATGCAC 58.941 45.455 0.00 0.00 42.45 4.57
1628 1784 2.036992 CCCAAAGCAACACCTAAATGCA 59.963 45.455 0.00 0.00 42.45 3.96
1629 1785 2.612721 CCCCAAAGCAACACCTAAATGC 60.613 50.000 0.00 0.00 40.34 3.56
1630 1786 2.632512 ACCCCAAAGCAACACCTAAATG 59.367 45.455 0.00 0.00 0.00 2.32
1631 1787 2.970987 ACCCCAAAGCAACACCTAAAT 58.029 42.857 0.00 0.00 0.00 1.40
1632 1788 2.463047 ACCCCAAAGCAACACCTAAA 57.537 45.000 0.00 0.00 0.00 1.85
1633 1789 2.463047 AACCCCAAAGCAACACCTAA 57.537 45.000 0.00 0.00 0.00 2.69
1750 1977 4.007644 CTCCACACCGGCAGAGCA 62.008 66.667 0.00 0.00 33.14 4.26
1923 2153 1.256376 CTCGAATCATGGAGAAACGCG 59.744 52.381 3.53 3.53 33.57 6.01
1961 2250 1.788258 CAAGAAGAGCAAGCAGACGA 58.212 50.000 0.00 0.00 0.00 4.20
1972 2261 1.466558 GGAAAAGGAGCGCAAGAAGAG 59.533 52.381 11.47 0.00 43.02 2.85
1993 2282 2.507324 GCCTCGAGGAGACGCAAC 60.507 66.667 35.69 10.76 37.39 4.17
2000 2289 1.388065 AACTGGATCGCCTCGAGGAG 61.388 60.000 35.69 31.46 39.91 3.69
2060 2349 2.803492 GCCAAGGTAGCATAACGAGAGG 60.803 54.545 0.00 0.00 29.65 3.69
2064 2353 1.742411 GCAGCCAAGGTAGCATAACGA 60.742 52.381 0.00 0.00 29.65 3.85
2065 2354 0.657840 GCAGCCAAGGTAGCATAACG 59.342 55.000 0.00 0.00 29.65 3.18
2066 2355 1.750193 TGCAGCCAAGGTAGCATAAC 58.250 50.000 3.97 0.00 31.05 1.89
2124 2429 3.951306 TCTCACGAAAAACGAGACGTAA 58.049 40.909 0.00 0.00 45.77 3.18
2125 2430 3.607422 TCTCACGAAAAACGAGACGTA 57.393 42.857 0.00 0.00 45.77 3.57
2126 2431 2.480224 TCTCACGAAAAACGAGACGT 57.520 45.000 0.00 0.00 45.77 4.34
2127 2432 3.829066 TTTCTCACGAAAAACGAGACG 57.171 42.857 0.00 0.00 45.77 4.18
2804 3167 3.403038 CAATCGACTTGAACCCTGAAGT 58.597 45.455 0.00 0.00 36.97 3.01
2820 3183 4.115516 CTGAGTTATCCAGTGACCAATCG 58.884 47.826 0.00 0.00 0.00 3.34
2831 3194 4.171878 AGATCCTCGACTGAGTTATCCA 57.828 45.455 0.00 0.00 40.85 3.41
2835 3198 3.948473 CCAGAAGATCCTCGACTGAGTTA 59.052 47.826 0.00 0.00 40.85 2.24
3099 3546 0.596577 TCGCCGATATCCTTTCCTCG 59.403 55.000 0.00 0.00 0.00 4.63
3311 3758 1.076438 AAGTAGAGGGGGCAAGCTTT 58.924 50.000 0.00 0.00 0.00 3.51
3813 6974 3.325870 TCACTTAACTTCATGGCAGTCG 58.674 45.455 0.00 0.00 0.00 4.18
3842 8137 4.157849 TGTGGACCTCAATTACACACAA 57.842 40.909 0.00 0.00 37.16 3.33
3923 8382 8.924691 AGATAATACGTAAAAACAAAGCGTGTA 58.075 29.630 0.00 0.00 40.60 2.90
3977 9061 1.134128 ACAGCAATATCGCATCCACCA 60.134 47.619 0.00 0.00 0.00 4.17
3978 9062 1.597742 ACAGCAATATCGCATCCACC 58.402 50.000 0.00 0.00 0.00 4.61
3980 9064 3.679502 CGATTACAGCAATATCGCATCCA 59.320 43.478 0.00 0.00 35.36 3.41
3981 9065 3.679980 ACGATTACAGCAATATCGCATCC 59.320 43.478 0.00 0.00 43.57 3.51
3983 9067 3.120546 GCACGATTACAGCAATATCGCAT 60.121 43.478 0.00 0.00 43.57 4.73
3986 9070 4.451379 TTGCACGATTACAGCAATATCG 57.549 40.909 0.00 0.00 42.71 2.92
4029 9114 7.642669 ACACTGAACACTCAATCATTGTAAAG 58.357 34.615 0.00 0.00 37.59 1.85
4100 9378 7.099120 ACTAATTTCAAGTGCAATGGAAATCC 58.901 34.615 25.31 0.00 38.60 3.01
4101 9379 8.437742 CAACTAATTTCAAGTGCAATGGAAATC 58.562 33.333 25.31 0.00 38.60 2.17
4102 9380 7.095102 GCAACTAATTTCAAGTGCAATGGAAAT 60.095 33.333 20.96 20.96 40.59 2.17
4103 9381 6.202570 GCAACTAATTTCAAGTGCAATGGAAA 59.797 34.615 18.29 18.29 34.17 3.13
4104 9382 5.695816 GCAACTAATTTCAAGTGCAATGGAA 59.304 36.000 0.00 0.00 0.00 3.53
4105 9383 5.010922 AGCAACTAATTTCAAGTGCAATGGA 59.989 36.000 0.00 0.00 0.00 3.41
4106 9384 5.232463 AGCAACTAATTTCAAGTGCAATGG 58.768 37.500 0.00 0.00 0.00 3.16
4107 9385 6.529125 CCTAGCAACTAATTTCAAGTGCAATG 59.471 38.462 0.00 0.00 0.00 2.82
4108 9386 6.434028 TCCTAGCAACTAATTTCAAGTGCAAT 59.566 34.615 0.00 0.00 0.00 3.56
4109 9387 5.767665 TCCTAGCAACTAATTTCAAGTGCAA 59.232 36.000 0.00 0.00 0.00 4.08
4110 9388 5.181245 GTCCTAGCAACTAATTTCAAGTGCA 59.819 40.000 0.00 0.00 0.00 4.57
4111 9389 5.412904 AGTCCTAGCAACTAATTTCAAGTGC 59.587 40.000 0.00 0.00 0.00 4.40
4112 9390 6.621596 GCAGTCCTAGCAACTAATTTCAAGTG 60.622 42.308 0.00 0.00 0.00 3.16
4113 9391 5.412904 GCAGTCCTAGCAACTAATTTCAAGT 59.587 40.000 0.00 0.00 0.00 3.16
4114 9392 5.163713 GGCAGTCCTAGCAACTAATTTCAAG 60.164 44.000 0.00 0.00 0.00 3.02
4115 9393 4.700213 GGCAGTCCTAGCAACTAATTTCAA 59.300 41.667 0.00 0.00 0.00 2.69
4116 9394 4.261801 GGCAGTCCTAGCAACTAATTTCA 58.738 43.478 0.00 0.00 0.00 2.69
4177 9456 6.713450 GGAGTGTTTCCTAAAATAAGGTGTGA 59.287 38.462 0.00 0.00 43.16 3.58
4197 9476 9.778993 CTCACTTCATGTATTATTTTTGGAGTG 57.221 33.333 3.74 3.74 42.68 3.51
4281 9728 9.447040 CAATATTGCATCAACTGAACATAAGAG 57.553 33.333 1.74 0.00 0.00 2.85
4357 9804 2.102420 AGACACCGAACACTCAATCACA 59.898 45.455 0.00 0.00 0.00 3.58
4358 9805 2.755650 AGACACCGAACACTCAATCAC 58.244 47.619 0.00 0.00 0.00 3.06
4372 9819 5.235831 GTGTAGACCACAAAGTAAAGACACC 59.764 44.000 0.00 0.00 43.92 4.16
4642 10203 3.377485 CCCATCAGAAGCATCTTTGTGAG 59.623 47.826 0.00 0.00 34.37 3.51
4769 10353 4.095483 CAGTTTAGCTGTTAATGGAGCAGG 59.905 45.833 0.00 0.00 40.27 4.85
5030 10637 1.876322 AGCAGAAGTGACTTGCAGAC 58.124 50.000 11.40 0.00 0.00 3.51
5158 10765 1.140134 TCTGGGCTTTGGGGTTAGCT 61.140 55.000 0.00 0.00 37.54 3.32
5386 10994 8.947115 GTGCTTGTATTTACCTAAGAGATGTTT 58.053 33.333 0.00 0.00 0.00 2.83
5398 11006 6.806739 GGACAAATGAAGTGCTTGTATTTACC 59.193 38.462 0.00 1.86 33.53 2.85
5676 11294 6.528072 CACTGAAAAGGAACAAAACTCAGTTC 59.472 38.462 0.00 0.00 39.90 3.01
5683 11301 5.474825 TGGTTCACTGAAAAGGAACAAAAC 58.525 37.500 0.00 0.00 41.98 2.43
5697 11315 1.475280 CCATTGAGCCATGGTTCACTG 59.525 52.381 30.27 30.27 36.38 3.66
5760 11378 5.639082 TCATAATCATCGAAATCATCACCCG 59.361 40.000 0.00 0.00 0.00 5.28
5763 11381 7.528516 CGTTGTCATAATCATCGAAATCATCAC 59.471 37.037 0.00 0.00 32.13 3.06
5832 11490 4.214119 GCAGCACTTTCTCTACATTTCACA 59.786 41.667 0.00 0.00 0.00 3.58
5959 11643 3.431415 GACCTTCTTTTGGGGCACTATT 58.569 45.455 0.00 0.00 0.00 1.73
5970 11654 5.652452 CCGAGATAATTTGGGACCTTCTTTT 59.348 40.000 0.00 0.00 0.00 2.27
6168 11859 8.151596 TGTTCACTGTGTTGAATATAACTGGTA 58.848 33.333 7.79 0.00 37.80 3.25
6178 11869 6.395426 ACATTCATGTTCACTGTGTTGAAT 57.605 33.333 7.79 13.90 37.90 2.57
6262 11953 1.676014 CCTCCACAGGTCCGAATTCAC 60.676 57.143 6.22 0.00 34.60 3.18
6351 12042 8.147058 TGCACTAATCATATCCTTCTCTCTTTC 58.853 37.037 0.00 0.00 0.00 2.62
7143 12846 2.029649 TCAAATCAGGCTTTCTTGCAGC 60.030 45.455 0.00 0.00 36.45 5.25
7254 12958 2.430332 GAGGAGGACTGGACTCAATCAG 59.570 54.545 0.00 0.00 36.70 2.90
7343 13072 3.181489 GCTCAATCAATTCAGCCTTCCTG 60.181 47.826 0.00 0.00 43.17 3.86
7414 13143 3.804036 TCAACAGGACGATCAACAAAGT 58.196 40.909 0.00 0.00 0.00 2.66
7481 13210 3.475566 CACTGTGAGTGGAAGAAGGAA 57.524 47.619 0.32 0.00 42.35 3.36
7521 13250 1.423921 GGTGAAACAGAAGAAGGGGGA 59.576 52.381 0.00 0.00 39.98 4.81
7538 13267 1.888512 ACTAACATGGCAAGCAAGGTG 59.111 47.619 0.00 0.00 0.00 4.00
7539 13268 2.292828 ACTAACATGGCAAGCAAGGT 57.707 45.000 0.00 0.00 0.00 3.50
7552 13284 6.155221 AGACATGATTCTGAGCCTAACTAACA 59.845 38.462 0.00 0.00 0.00 2.41
7581 13313 4.991687 GGGAAGAACTGTGTTAGTCAAGAG 59.008 45.833 0.00 0.00 39.18 2.85
7596 13329 2.234168 GGAGTCTACAGGTGGGAAGAAC 59.766 54.545 0.00 0.00 0.00 3.01
7602 13335 1.208052 CATGTGGAGTCTACAGGTGGG 59.792 57.143 15.03 0.00 0.00 4.61
7786 13527 1.511318 CCACGTGTCGGGATTTTGCA 61.511 55.000 15.65 0.00 28.17 4.08
7838 13579 2.743664 TGATTTCAGATGTGGTGAAGCG 59.256 45.455 0.00 0.00 35.39 4.68
7842 13583 5.927689 GCAAATTTGATTTCAGATGTGGTGA 59.072 36.000 22.31 0.00 29.20 4.02
7843 13584 5.121142 GGCAAATTTGATTTCAGATGTGGTG 59.879 40.000 22.31 0.00 29.20 4.17
7844 13585 5.012354 AGGCAAATTTGATTTCAGATGTGGT 59.988 36.000 22.31 0.00 29.20 4.16
7846 13587 6.160684 TCAGGCAAATTTGATTTCAGATGTG 58.839 36.000 22.31 3.55 31.04 3.21
7856 13606 7.990886 AGCAATTAATCATCAGGCAAATTTGAT 59.009 29.630 22.31 6.44 34.48 2.57
7861 13611 6.474140 TCAGCAATTAATCATCAGGCAAAT 57.526 33.333 0.00 0.00 0.00 2.32
7903 13653 3.411418 TTCTGATCCGAGACGCGCC 62.411 63.158 5.73 0.00 39.11 6.53
7905 13655 0.863538 CACTTCTGATCCGAGACGCG 60.864 60.000 3.53 3.53 40.47 6.01
8087 13837 6.621316 TCAGTCTTCGGTATTAGAGCTAAG 57.379 41.667 0.00 0.00 31.34 2.18
8146 13901 2.570135 GATCAATGCCTCCTTCAGTCC 58.430 52.381 0.00 0.00 0.00 3.85
8158 13913 2.149578 CGAAGGAGATGGGATCAATGC 58.850 52.381 0.00 0.00 0.00 3.56
8193 13948 2.002586 CTATTTAGGCGCATCATCCCG 58.997 52.381 10.83 0.00 0.00 5.14
8462 14225 1.908340 ATCTCCAGCACTGCTCACCC 61.908 60.000 0.00 0.00 36.40 4.61
8485 14248 8.562892 CCAGGTATATCAGAAAGCTACAAATTG 58.437 37.037 0.00 0.00 0.00 2.32
8486 14249 8.275040 ACCAGGTATATCAGAAAGCTACAAATT 58.725 33.333 0.00 0.00 0.00 1.82
8492 14255 4.901849 AGCACCAGGTATATCAGAAAGCTA 59.098 41.667 0.00 0.00 0.00 3.32
8506 14269 0.475906 AAGAGAAGCAAGCACCAGGT 59.524 50.000 0.00 0.00 0.00 4.00
8546 14309 3.457380 ACATACAGCAGATCATCCAGGTT 59.543 43.478 0.00 0.00 0.00 3.50
8548 14311 3.766068 ACATACAGCAGATCATCCAGG 57.234 47.619 0.00 0.00 0.00 4.45
8752 14575 1.079503 GTTTAAGCTGGCTGAGACCG 58.920 55.000 0.00 0.00 0.00 4.79
8800 14638 5.551233 TGCTGCACCCATAGATTAATCTAC 58.449 41.667 24.17 12.77 41.77 2.59
8873 14711 5.125097 ACGGGTCTATATACATCCGATTCAC 59.875 44.000 15.66 0.00 40.53 3.18
8874 14712 5.258841 ACGGGTCTATATACATCCGATTCA 58.741 41.667 15.66 0.00 40.53 2.57
8875 14713 5.831702 ACGGGTCTATATACATCCGATTC 57.168 43.478 15.66 0.00 40.53 2.52
8876 14714 6.600882 AAACGGGTCTATATACATCCGATT 57.399 37.500 15.66 7.88 40.53 3.34
8878 14716 6.716628 ACTAAAACGGGTCTATATACATCCGA 59.283 38.462 15.66 0.00 40.53 4.55
8879 14717 6.805271 CACTAAAACGGGTCTATATACATCCG 59.195 42.308 8.04 8.04 42.69 4.18
8880 14718 7.597743 CACACTAAAACGGGTCTATATACATCC 59.402 40.741 0.00 0.00 0.00 3.51
8891 14730 2.356695 AGCAAACACACTAAAACGGGTC 59.643 45.455 0.00 0.00 0.00 4.46
8894 14733 3.064820 AGTGAGCAAACACACTAAAACGG 59.935 43.478 0.00 0.00 44.60 4.44
8896 14735 5.229921 TGAGTGAGCAAACACACTAAAAC 57.770 39.130 0.00 0.00 46.12 2.43
8987 14826 9.739276 ATCTTCACAGTATAAGTTTCCATTTCA 57.261 29.630 0.00 0.00 0.00 2.69
9001 14840 6.656270 TGCAGATCAAACAATCTTCACAGTAT 59.344 34.615 0.00 0.00 33.68 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.