Multiple sequence alignment - TraesCS5D01G092100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G092100 chr5D 100.000 3623 0 0 1 3623 100128993 100125371 0.000000e+00 6691.0
1 TraesCS5D01G092100 chr5D 96.815 157 5 0 1 157 149717379 149717223 2.770000e-66 263.0
2 TraesCS5D01G092100 chr5D 96.129 155 6 0 1 155 255256634 255256788 1.670000e-63 254.0
3 TraesCS5D01G092100 chr5D 96.129 155 6 0 1 155 268011453 268011299 1.670000e-63 254.0
4 TraesCS5D01G092100 chr5D 89.571 163 17 0 162 324 133347375 133347213 1.320000e-49 207.0
5 TraesCS5D01G092100 chr5D 83.085 201 32 1 1721 1921 37634695 37634893 7.990000e-42 182.0
6 TraesCS5D01G092100 chr5D 76.712 292 43 16 458 728 350759485 350759198 4.880000e-29 139.0
7 TraesCS5D01G092100 chr5D 79.474 190 34 5 540 727 333399858 333399672 2.940000e-26 130.0
8 TraesCS5D01G092100 chr5D 89.247 93 9 1 451 542 118005781 118005873 8.220000e-22 115.0
9 TraesCS5D01G092100 chr5D 98.000 50 0 1 325 374 167992593 167992545 6.450000e-13 86.1
10 TraesCS5D01G092100 chr5D 87.143 70 9 0 2371 2440 37635953 37636022 3.000000e-11 80.5
11 TraesCS5D01G092100 chr5D 92.453 53 2 1 322 374 259450079 259450129 1.400000e-09 75.0
12 TraesCS5D01G092100 chr5D 86.885 61 8 0 378 438 412604698 412604758 6.490000e-08 69.4
13 TraesCS5D01G092100 chr5A 94.839 2112 70 15 1484 3569 100711054 100708956 0.000000e+00 3260.0
14 TraesCS5D01G092100 chr5A 96.724 519 15 2 963 1480 100711699 100711182 0.000000e+00 863.0
15 TraesCS5D01G092100 chr5A 85.152 559 53 10 275 832 100713269 100712740 2.460000e-151 545.0
16 TraesCS5D01G092100 chr5A 98.026 152 3 0 825 976 100711865 100711714 7.710000e-67 265.0
17 TraesCS5D01G092100 chr5A 100.000 50 0 0 325 374 272555804 272555755 3.850000e-15 93.5
18 TraesCS5D01G092100 chr5A 97.297 37 1 0 400 436 413024955 413024919 3.020000e-06 63.9
19 TraesCS5D01G092100 chr5B 95.439 899 26 6 1484 2367 108856439 108855541 0.000000e+00 1419.0
20 TraesCS5D01G092100 chr5B 92.274 686 30 10 2425 3098 108855544 108854870 0.000000e+00 952.0
21 TraesCS5D01G092100 chr5B 93.696 460 22 3 1027 1480 108857025 108856567 0.000000e+00 682.0
22 TraesCS5D01G092100 chr5B 93.130 131 9 0 2169 2299 28145440 28145570 3.690000e-45 193.0
23 TraesCS5D01G092100 chr5B 93.023 86 4 2 3085 3170 108854853 108854770 1.370000e-24 124.0
24 TraesCS5D01G092100 chr5B 78.774 212 23 11 458 648 555126529 555126739 4.910000e-24 122.0
25 TraesCS5D01G092100 chr5B 78.659 164 21 12 918 1069 27815092 27814931 2.980000e-16 97.1
26 TraesCS5D01G092100 chr5B 79.221 154 13 11 1568 1708 28141364 28141511 4.980000e-14 89.8
27 TraesCS5D01G092100 chr6D 96.129 155 6 0 1 155 255346190 255346344 1.670000e-63 254.0
28 TraesCS5D01G092100 chr6D 95.484 155 7 0 1 155 215055010 215055164 7.770000e-62 248.0
29 TraesCS5D01G092100 chr6D 80.000 205 29 9 454 648 10714402 10714200 1.360000e-29 141.0
30 TraesCS5D01G092100 chr6D 80.663 181 32 3 555 734 81048544 81048722 1.750000e-28 137.0
31 TraesCS5D01G092100 chr6D 89.091 55 5 1 396 449 393928122 393928068 2.330000e-07 67.6
32 TraesCS5D01G092100 chr7D 96.129 155 5 1 1 155 49838292 49838445 6.010000e-63 252.0
33 TraesCS5D01G092100 chr7D 78.229 271 36 12 453 701 174130356 174130625 6.270000e-33 152.0
34 TraesCS5D01G092100 chr7D 81.283 187 26 8 540 723 203946407 203946227 3.770000e-30 143.0
35 TraesCS5D01G092100 chr7D 89.130 92 9 1 453 543 41996539 41996630 2.960000e-21 113.0
36 TraesCS5D01G092100 chr7D 87.097 93 11 1 452 543 408378121 408378213 1.780000e-18 104.0
37 TraesCS5D01G092100 chr3D 96.689 151 5 0 1 151 437365331 437365481 6.010000e-63 252.0
38 TraesCS5D01G092100 chr3D 95.484 155 7 0 1 155 403450397 403450551 7.770000e-62 248.0
39 TraesCS5D01G092100 chr3D 92.169 166 13 0 159 324 277817164 277816999 6.050000e-58 235.0
40 TraesCS5D01G092100 chr3D 89.881 168 17 0 158 325 272080492 272080325 2.190000e-52 217.0
41 TraesCS5D01G092100 chr4D 95.513 156 7 0 2 157 190381642 190381487 2.160000e-62 250.0
42 TraesCS5D01G092100 chr4D 78.814 236 30 12 454 670 370304733 370304499 1.360000e-29 141.0
43 TraesCS5D01G092100 chr4D 75.427 293 40 16 451 723 28472406 28472126 2.960000e-21 113.0
44 TraesCS5D01G092100 chr4D 89.855 69 7 0 381 449 88477637 88477569 4.980000e-14 89.8
45 TraesCS5D01G092100 chr4D 90.323 62 6 0 388 449 452544544 452544605 8.340000e-12 82.4
46 TraesCS5D01G092100 chr4D 94.340 53 1 1 322 374 303321880 303321930 3.000000e-11 80.5
47 TraesCS5D01G092100 chr4D 91.071 56 5 0 394 449 494891644 494891589 3.880000e-10 76.8
48 TraesCS5D01G092100 chr2A 89.412 170 18 0 156 325 439141720 439141551 7.880000e-52 215.0
49 TraesCS5D01G092100 chr2A 87.500 176 21 1 159 333 302031673 302031848 6.130000e-48 202.0
50 TraesCS5D01G092100 chr2A 93.333 45 3 0 393 437 154408134 154408178 2.330000e-07 67.6
51 TraesCS5D01G092100 chr3B 89.349 169 16 2 160 327 227589095 227589262 1.020000e-50 211.0
52 TraesCS5D01G092100 chr3B 79.268 164 31 3 458 619 450221612 450221774 1.060000e-20 111.0
53 TraesCS5D01G092100 chr4A 90.000 160 15 1 159 318 192777229 192777071 4.740000e-49 206.0
54 TraesCS5D01G092100 chr4A 98.000 50 1 0 325 374 538664568 538664519 1.790000e-13 87.9
55 TraesCS5D01G092100 chr4A 98.000 50 0 1 325 374 533599042 533598994 6.450000e-13 86.1
56 TraesCS5D01G092100 chr2D 87.571 177 21 1 158 333 260322860 260323036 1.710000e-48 204.0
57 TraesCS5D01G092100 chr2D 87.429 175 21 1 157 330 230576435 230576261 2.210000e-47 200.0
58 TraesCS5D01G092100 chr2D 82.486 177 30 1 561 737 622489973 622489798 1.740000e-33 154.0
59 TraesCS5D01G092100 chr2D 74.161 298 52 12 451 728 451028919 451029211 2.300000e-17 100.0
60 TraesCS5D01G092100 chrUn 77.061 279 54 5 453 727 83388030 83387758 6.270000e-33 152.0
61 TraesCS5D01G092100 chr1D 81.152 191 30 6 540 728 464756798 464756984 8.110000e-32 148.0
62 TraesCS5D01G092100 chr4B 79.293 198 35 5 538 733 364333270 364333463 2.270000e-27 134.0
63 TraesCS5D01G092100 chr3A 76.289 291 45 12 453 722 174277478 174277765 2.270000e-27 134.0
64 TraesCS5D01G092100 chr3A 91.011 89 7 1 456 543 498260347 498260435 6.350000e-23 119.0
65 TraesCS5D01G092100 chr3A 98.000 50 0 1 325 374 625767274 625767226 6.450000e-13 86.1
66 TraesCS5D01G092100 chr3A 94.340 53 1 1 325 377 299720574 299720524 3.000000e-11 80.5
67 TraesCS5D01G092100 chr1B 88.889 99 10 1 453 550 200295565 200295467 1.770000e-23 121.0
68 TraesCS5D01G092100 chr6B 90.123 81 8 0 372 452 663528225 663528305 4.950000e-19 106.0
69 TraesCS5D01G092100 chr6B 94.545 55 1 1 322 374 165901984 165902038 2.320000e-12 84.2
70 TraesCS5D01G092100 chr7A 96.296 54 1 1 322 374 632723895 632723948 1.790000e-13 87.9
71 TraesCS5D01G092100 chr7A 92.593 54 2 1 322 375 241353440 241353491 3.880000e-10 76.8
72 TraesCS5D01G092100 chr2B 96.296 54 1 1 322 375 788725303 788725355 1.790000e-13 87.9
73 TraesCS5D01G092100 chr2B 94.444 54 1 2 399 451 631338398 631338346 8.340000e-12 82.4
74 TraesCS5D01G092100 chr2B 87.324 71 7 2 380 449 449125462 449125393 3.000000e-11 80.5
75 TraesCS5D01G092100 chr6A 94.340 53 1 1 322 374 548291218 548291268 3.000000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G092100 chr5D 100125371 100128993 3622 True 6691.00 6691 100.00000 1 3623 1 chr5D.!!$R1 3622
1 TraesCS5D01G092100 chr5A 100708956 100713269 4313 True 1233.25 3260 93.68525 275 3569 4 chr5A.!!$R3 3294
2 TraesCS5D01G092100 chr5B 108854770 108857025 2255 True 794.25 1419 93.60800 1027 3170 4 chr5B.!!$R2 2143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.105607 GGTTCGGTAGGGGGAGATCT 60.106 60.0 0.0 0.00 0.00 2.75 F
218 219 0.108945 GTTCTTTGCCATCAGCCAGC 60.109 55.0 0.0 0.00 42.71 4.85 F
379 380 0.179171 CGATCCTACACGAGCGTTGT 60.179 55.0 0.0 0.00 36.92 3.32 F
381 382 0.179171 ATCCTACACGAGCGTTGTCG 60.179 55.0 0.0 2.95 45.76 4.35 F
571 572 0.188587 TGCCCTCCTATCCGTCTCAT 59.811 55.0 0.0 0.00 0.00 2.90 F
1376 2293 0.741326 CGGACGACATCTCTGTGGAT 59.259 55.0 0.0 0.00 35.14 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 2296 0.251916 AAGCTAGGCCGTTGCATACA 59.748 50.000 17.31 0.0 40.13 2.29 R
1884 2940 1.872773 ACACCCCCTTCTCTGATCTC 58.127 55.000 0.00 0.0 0.00 2.75 R
2156 3215 5.376625 TCTTAATATGTTCATCCCACCTGC 58.623 41.667 0.00 0.0 0.00 4.85 R
2296 3355 7.624549 TCCTTATTATAGCAGTCATCCAATCC 58.375 38.462 0.00 0.0 0.00 3.01 R
2401 3460 0.323451 AGCTTCCGTTGGAAATCCCC 60.323 55.000 0.00 0.0 41.54 4.81 R
2891 3957 0.037139 CTTGCTGCTCTGCTCAGACT 60.037 55.000 0.00 0.0 33.54 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.553459 AACCAGTATAAATCTTGTGTCTCTTG 57.447 34.615 0.00 0.00 0.00 3.02
26 27 7.680730 ACCAGTATAAATCTTGTGTCTCTTGT 58.319 34.615 0.00 0.00 0.00 3.16
27 28 7.604164 ACCAGTATAAATCTTGTGTCTCTTGTG 59.396 37.037 0.00 0.00 0.00 3.33
28 29 7.604164 CCAGTATAAATCTTGTGTCTCTTGTGT 59.396 37.037 0.00 0.00 0.00 3.72
29 30 8.993121 CAGTATAAATCTTGTGTCTCTTGTGTT 58.007 33.333 0.00 0.00 0.00 3.32
30 31 8.993121 AGTATAAATCTTGTGTCTCTTGTGTTG 58.007 33.333 0.00 0.00 0.00 3.33
31 32 4.558538 AATCTTGTGTCTCTTGTGTTGC 57.441 40.909 0.00 0.00 0.00 4.17
32 33 1.933181 TCTTGTGTCTCTTGTGTTGCG 59.067 47.619 0.00 0.00 0.00 4.85
33 34 1.933181 CTTGTGTCTCTTGTGTTGCGA 59.067 47.619 0.00 0.00 0.00 5.10
34 35 1.570813 TGTGTCTCTTGTGTTGCGAG 58.429 50.000 0.00 0.00 0.00 5.03
35 36 1.134818 TGTGTCTCTTGTGTTGCGAGT 60.135 47.619 0.00 0.00 0.00 4.18
36 37 1.933853 GTGTCTCTTGTGTTGCGAGTT 59.066 47.619 0.00 0.00 0.00 3.01
37 38 2.033662 GTGTCTCTTGTGTTGCGAGTTC 60.034 50.000 0.00 0.00 0.00 3.01
38 39 1.190323 GTCTCTTGTGTTGCGAGTTCG 59.810 52.381 0.00 0.00 43.27 3.95
48 49 2.652496 CGAGTTCGCCGAGCTAGC 60.652 66.667 6.62 6.62 0.00 3.42
49 50 2.278923 GAGTTCGCCGAGCTAGCC 60.279 66.667 12.13 1.79 0.00 3.93
50 51 2.756283 AGTTCGCCGAGCTAGCCT 60.756 61.111 12.13 0.00 0.00 4.58
51 52 2.184579 GTTCGCCGAGCTAGCCTT 59.815 61.111 12.13 0.00 0.00 4.35
52 53 1.035932 AGTTCGCCGAGCTAGCCTTA 61.036 55.000 12.13 0.00 0.00 2.69
53 54 0.595310 GTTCGCCGAGCTAGCCTTAG 60.595 60.000 12.13 0.00 0.00 2.18
54 55 0.750546 TTCGCCGAGCTAGCCTTAGA 60.751 55.000 12.13 2.14 0.00 2.10
55 56 1.167155 TCGCCGAGCTAGCCTTAGAG 61.167 60.000 12.13 0.00 0.00 2.43
56 57 1.167155 CGCCGAGCTAGCCTTAGAGA 61.167 60.000 12.13 0.00 0.00 3.10
57 58 1.253100 GCCGAGCTAGCCTTAGAGAT 58.747 55.000 12.13 0.00 0.00 2.75
58 59 1.201414 GCCGAGCTAGCCTTAGAGATC 59.799 57.143 12.13 0.00 0.00 2.75
59 60 1.466950 CCGAGCTAGCCTTAGAGATCG 59.533 57.143 12.13 11.27 32.93 3.69
60 61 2.147958 CGAGCTAGCCTTAGAGATCGT 58.852 52.381 12.13 0.00 30.68 3.73
61 62 3.327626 CGAGCTAGCCTTAGAGATCGTA 58.672 50.000 12.13 0.00 30.68 3.43
62 63 3.369756 CGAGCTAGCCTTAGAGATCGTAG 59.630 52.174 12.13 0.00 30.68 3.51
63 64 3.078837 AGCTAGCCTTAGAGATCGTAGC 58.921 50.000 12.13 0.00 33.17 3.58
64 65 2.159626 GCTAGCCTTAGAGATCGTAGCG 60.160 54.545 2.29 0.00 0.00 4.26
65 66 2.257691 AGCCTTAGAGATCGTAGCGA 57.742 50.000 0.00 0.00 41.13 4.93
66 67 2.147958 AGCCTTAGAGATCGTAGCGAG 58.852 52.381 0.00 0.00 39.91 5.03
67 68 1.198178 GCCTTAGAGATCGTAGCGAGG 59.802 57.143 0.00 0.00 39.91 4.63
68 69 2.496111 CCTTAGAGATCGTAGCGAGGT 58.504 52.381 0.00 0.00 39.91 3.85
69 70 2.879646 CCTTAGAGATCGTAGCGAGGTT 59.120 50.000 0.00 0.00 39.91 3.50
70 71 4.063689 CCTTAGAGATCGTAGCGAGGTTA 58.936 47.826 0.00 0.00 39.91 2.85
71 72 4.514441 CCTTAGAGATCGTAGCGAGGTTAA 59.486 45.833 0.00 0.00 39.91 2.01
72 73 5.334260 CCTTAGAGATCGTAGCGAGGTTAAG 60.334 48.000 0.00 3.63 39.91 1.85
73 74 2.879646 AGAGATCGTAGCGAGGTTAAGG 59.120 50.000 0.00 0.00 39.91 2.69
74 75 1.955080 AGATCGTAGCGAGGTTAAGGG 59.045 52.381 0.00 0.00 39.91 3.95
75 76 1.680207 GATCGTAGCGAGGTTAAGGGT 59.320 52.381 0.00 0.00 39.91 4.34
76 77 0.813184 TCGTAGCGAGGTTAAGGGTG 59.187 55.000 0.00 0.00 0.00 4.61
77 78 0.529378 CGTAGCGAGGTTAAGGGTGT 59.471 55.000 0.00 0.00 0.00 4.16
78 79 1.734707 CGTAGCGAGGTTAAGGGTGTG 60.735 57.143 0.00 0.00 0.00 3.82
79 80 0.899720 TAGCGAGGTTAAGGGTGTGG 59.100 55.000 0.00 0.00 0.00 4.17
80 81 1.125711 AGCGAGGTTAAGGGTGTGGT 61.126 55.000 0.00 0.00 0.00 4.16
81 82 0.250597 GCGAGGTTAAGGGTGTGGTT 60.251 55.000 0.00 0.00 0.00 3.67
82 83 1.804601 CGAGGTTAAGGGTGTGGTTC 58.195 55.000 0.00 0.00 0.00 3.62
83 84 1.804601 GAGGTTAAGGGTGTGGTTCG 58.195 55.000 0.00 0.00 0.00 3.95
84 85 0.399075 AGGTTAAGGGTGTGGTTCGG 59.601 55.000 0.00 0.00 0.00 4.30
85 86 0.109153 GGTTAAGGGTGTGGTTCGGT 59.891 55.000 0.00 0.00 0.00 4.69
86 87 1.347378 GGTTAAGGGTGTGGTTCGGTA 59.653 52.381 0.00 0.00 0.00 4.02
87 88 2.613725 GGTTAAGGGTGTGGTTCGGTAG 60.614 54.545 0.00 0.00 0.00 3.18
88 89 1.269012 TAAGGGTGTGGTTCGGTAGG 58.731 55.000 0.00 0.00 0.00 3.18
89 90 1.486145 AAGGGTGTGGTTCGGTAGGG 61.486 60.000 0.00 0.00 0.00 3.53
90 91 2.666812 GGTGTGGTTCGGTAGGGG 59.333 66.667 0.00 0.00 0.00 4.79
91 92 2.666812 GTGTGGTTCGGTAGGGGG 59.333 66.667 0.00 0.00 0.00 5.40
92 93 1.914764 GTGTGGTTCGGTAGGGGGA 60.915 63.158 0.00 0.00 0.00 4.81
93 94 1.611261 TGTGGTTCGGTAGGGGGAG 60.611 63.158 0.00 0.00 0.00 4.30
94 95 1.305549 GTGGTTCGGTAGGGGGAGA 60.306 63.158 0.00 0.00 0.00 3.71
95 96 0.690077 GTGGTTCGGTAGGGGGAGAT 60.690 60.000 0.00 0.00 0.00 2.75
96 97 0.398098 TGGTTCGGTAGGGGGAGATC 60.398 60.000 0.00 0.00 0.00 2.75
97 98 0.105607 GGTTCGGTAGGGGGAGATCT 60.106 60.000 0.00 0.00 0.00 2.75
98 99 1.691801 GGTTCGGTAGGGGGAGATCTT 60.692 57.143 0.00 0.00 0.00 2.40
99 100 1.687660 GTTCGGTAGGGGGAGATCTTC 59.312 57.143 0.00 0.00 0.00 2.87
100 101 0.931468 TCGGTAGGGGGAGATCTTCA 59.069 55.000 2.72 0.00 0.00 3.02
101 102 1.503784 TCGGTAGGGGGAGATCTTCAT 59.496 52.381 2.72 0.00 0.00 2.57
102 103 1.620819 CGGTAGGGGGAGATCTTCATG 59.379 57.143 2.72 0.00 0.00 3.07
103 104 1.349357 GGTAGGGGGAGATCTTCATGC 59.651 57.143 2.72 0.00 0.00 4.06
104 105 1.001406 GTAGGGGGAGATCTTCATGCG 59.999 57.143 2.72 0.00 0.00 4.73
105 106 1.599240 GGGGGAGATCTTCATGCGC 60.599 63.158 0.00 0.00 0.00 6.09
106 107 1.146930 GGGGAGATCTTCATGCGCA 59.853 57.895 14.96 14.96 0.00 6.09
107 108 1.162800 GGGGAGATCTTCATGCGCAC 61.163 60.000 14.90 0.00 0.00 5.34
108 109 1.162800 GGGAGATCTTCATGCGCACC 61.163 60.000 14.90 5.66 0.00 5.01
109 110 1.162800 GGAGATCTTCATGCGCACCC 61.163 60.000 14.90 0.00 0.00 4.61
110 111 1.153086 AGATCTTCATGCGCACCCC 60.153 57.895 14.90 0.00 0.00 4.95
111 112 1.451927 GATCTTCATGCGCACCCCA 60.452 57.895 14.90 0.00 0.00 4.96
112 113 1.001020 ATCTTCATGCGCACCCCAA 60.001 52.632 14.90 1.65 0.00 4.12
113 114 0.396139 ATCTTCATGCGCACCCCAAT 60.396 50.000 14.90 0.63 0.00 3.16
114 115 1.140161 CTTCATGCGCACCCCAATG 59.860 57.895 14.90 6.07 0.00 2.82
115 116 1.597797 CTTCATGCGCACCCCAATGT 61.598 55.000 14.90 0.00 0.00 2.71
116 117 1.184322 TTCATGCGCACCCCAATGTT 61.184 50.000 14.90 0.00 0.00 2.71
117 118 1.153784 CATGCGCACCCCAATGTTC 60.154 57.895 14.90 0.00 0.00 3.18
118 119 2.699768 ATGCGCACCCCAATGTTCG 61.700 57.895 14.90 0.00 0.00 3.95
119 120 3.053291 GCGCACCCCAATGTTCGA 61.053 61.111 0.30 0.00 0.00 3.71
120 121 2.622011 GCGCACCCCAATGTTCGAA 61.622 57.895 0.30 0.00 0.00 3.71
121 122 1.209127 CGCACCCCAATGTTCGAAC 59.791 57.895 21.42 21.42 0.00 3.95
122 123 1.584495 GCACCCCAATGTTCGAACC 59.416 57.895 24.78 8.19 0.00 3.62
123 124 0.893727 GCACCCCAATGTTCGAACCT 60.894 55.000 24.78 13.13 0.00 3.50
124 125 1.616159 CACCCCAATGTTCGAACCTT 58.384 50.000 24.78 18.42 0.00 3.50
125 126 1.269448 CACCCCAATGTTCGAACCTTG 59.731 52.381 28.82 28.82 35.26 3.61
126 127 1.144093 ACCCCAATGTTCGAACCTTGA 59.856 47.619 34.01 16.16 36.88 3.02
127 128 1.812571 CCCCAATGTTCGAACCTTGAG 59.187 52.381 34.01 25.95 36.88 3.02
128 129 1.812571 CCCAATGTTCGAACCTTGAGG 59.187 52.381 34.01 28.86 36.88 3.86
129 130 1.812571 CCAATGTTCGAACCTTGAGGG 59.187 52.381 34.01 20.99 36.88 4.30
138 139 3.365535 CCTTGAGGGTTTTGCCGG 58.634 61.111 0.00 0.00 38.44 6.13
139 140 1.228429 CCTTGAGGGTTTTGCCGGA 60.228 57.895 5.05 0.00 38.44 5.14
140 141 0.825840 CCTTGAGGGTTTTGCCGGAA 60.826 55.000 5.05 0.00 38.44 4.30
141 142 0.313987 CTTGAGGGTTTTGCCGGAAC 59.686 55.000 5.05 0.00 38.44 3.62
142 143 1.110518 TTGAGGGTTTTGCCGGAACC 61.111 55.000 13.86 13.86 44.62 3.62
155 156 3.460648 GGAACCCGAGATCCAACAG 57.539 57.895 0.00 0.00 35.71 3.16
156 157 0.744771 GGAACCCGAGATCCAACAGC 60.745 60.000 0.00 0.00 35.71 4.40
157 158 0.744771 GAACCCGAGATCCAACAGCC 60.745 60.000 0.00 0.00 0.00 4.85
158 159 2.202932 CCCGAGATCCAACAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
159 160 2.579201 CCGAGATCCAACAGCCGT 59.421 61.111 0.00 0.00 0.00 5.68
160 161 1.519455 CCGAGATCCAACAGCCGTC 60.519 63.158 0.00 0.00 0.00 4.79
161 162 1.513158 CGAGATCCAACAGCCGTCT 59.487 57.895 0.00 0.00 0.00 4.18
162 163 0.803768 CGAGATCCAACAGCCGTCTG 60.804 60.000 0.00 0.00 45.71 3.51
163 164 1.078848 AGATCCAACAGCCGTCTGC 60.079 57.895 0.00 0.00 44.10 4.26
180 181 4.560136 TCTGCTAGCAGACGATAAAGAG 57.440 45.455 37.64 13.84 46.80 2.85
181 182 3.316588 TCTGCTAGCAGACGATAAAGAGG 59.683 47.826 37.64 13.64 46.80 3.69
182 183 3.024547 TGCTAGCAGACGATAAAGAGGT 58.975 45.455 14.93 0.00 0.00 3.85
183 184 3.181486 TGCTAGCAGACGATAAAGAGGTG 60.181 47.826 14.93 0.00 0.00 4.00
184 185 2.969628 AGCAGACGATAAAGAGGTGG 57.030 50.000 0.00 0.00 0.00 4.61
185 186 1.134670 AGCAGACGATAAAGAGGTGGC 60.135 52.381 0.00 0.00 0.00 5.01
186 187 1.134670 GCAGACGATAAAGAGGTGGCT 60.135 52.381 0.00 0.00 0.00 4.75
187 188 2.544685 CAGACGATAAAGAGGTGGCTG 58.455 52.381 0.00 0.00 0.00 4.85
188 189 2.166459 CAGACGATAAAGAGGTGGCTGA 59.834 50.000 0.00 0.00 0.00 4.26
189 190 3.034635 AGACGATAAAGAGGTGGCTGAT 58.965 45.455 0.00 0.00 0.00 2.90
190 191 3.126831 GACGATAAAGAGGTGGCTGATG 58.873 50.000 0.00 0.00 0.00 3.07
191 192 2.158900 ACGATAAAGAGGTGGCTGATGG 60.159 50.000 0.00 0.00 0.00 3.51
192 193 2.225467 GATAAAGAGGTGGCTGATGGC 58.775 52.381 0.00 0.00 40.90 4.40
193 194 0.991146 TAAAGAGGTGGCTGATGGCA 59.009 50.000 0.00 0.00 46.87 4.92
203 204 3.634504 TGGCTGATGGCAAATATGTTCT 58.365 40.909 0.00 0.00 46.03 3.01
204 205 4.025360 TGGCTGATGGCAAATATGTTCTT 58.975 39.130 0.00 0.00 46.03 2.52
205 206 4.467082 TGGCTGATGGCAAATATGTTCTTT 59.533 37.500 0.00 0.00 46.03 2.52
206 207 4.807304 GGCTGATGGCAAATATGTTCTTTG 59.193 41.667 0.00 0.00 44.01 2.77
214 215 5.961395 CAAATATGTTCTTTGCCATCAGC 57.039 39.130 0.00 0.00 44.14 4.26
215 216 4.660789 AATATGTTCTTTGCCATCAGCC 57.339 40.909 0.00 0.00 42.71 4.85
216 217 1.927487 ATGTTCTTTGCCATCAGCCA 58.073 45.000 0.00 0.00 42.71 4.75
217 218 1.250328 TGTTCTTTGCCATCAGCCAG 58.750 50.000 0.00 0.00 42.71 4.85
218 219 0.108945 GTTCTTTGCCATCAGCCAGC 60.109 55.000 0.00 0.00 42.71 4.85
219 220 0.251474 TTCTTTGCCATCAGCCAGCT 60.251 50.000 0.00 0.00 42.71 4.24
220 221 0.679002 TCTTTGCCATCAGCCAGCTC 60.679 55.000 0.00 0.00 42.71 4.09
221 222 0.680280 CTTTGCCATCAGCCAGCTCT 60.680 55.000 0.00 0.00 42.71 4.09
222 223 0.251474 TTTGCCATCAGCCAGCTCTT 60.251 50.000 0.00 0.00 42.71 2.85
223 224 0.251474 TTGCCATCAGCCAGCTCTTT 60.251 50.000 0.00 0.00 42.71 2.52
224 225 0.963856 TGCCATCAGCCAGCTCTTTG 60.964 55.000 0.00 0.00 42.71 2.77
225 226 1.807886 CCATCAGCCAGCTCTTTGC 59.192 57.895 0.00 0.00 43.29 3.68
226 227 1.664321 CCATCAGCCAGCTCTTTGCC 61.664 60.000 0.00 0.00 44.23 4.52
227 228 1.748122 ATCAGCCAGCTCTTTGCCG 60.748 57.895 0.00 0.00 44.23 5.69
228 229 2.475371 ATCAGCCAGCTCTTTGCCGT 62.475 55.000 0.00 0.00 44.23 5.68
229 230 2.113986 AGCCAGCTCTTTGCCGTT 59.886 55.556 0.00 0.00 44.23 4.44
230 231 1.529244 AGCCAGCTCTTTGCCGTTT 60.529 52.632 0.00 0.00 44.23 3.60
231 232 1.372128 GCCAGCTCTTTGCCGTTTG 60.372 57.895 0.00 0.00 44.23 2.93
232 233 2.032981 CCAGCTCTTTGCCGTTTGT 58.967 52.632 0.00 0.00 44.23 2.83
233 234 0.385390 CCAGCTCTTTGCCGTTTGTT 59.615 50.000 0.00 0.00 44.23 2.83
234 235 1.202405 CCAGCTCTTTGCCGTTTGTTT 60.202 47.619 0.00 0.00 44.23 2.83
235 236 2.539476 CAGCTCTTTGCCGTTTGTTTT 58.461 42.857 0.00 0.00 44.23 2.43
236 237 2.929398 CAGCTCTTTGCCGTTTGTTTTT 59.071 40.909 0.00 0.00 44.23 1.94
255 256 2.981400 TTGCAAGCTAACGGTAAAGC 57.019 45.000 0.00 7.18 39.08 3.51
256 257 1.161843 TGCAAGCTAACGGTAAAGCC 58.838 50.000 10.73 0.00 39.64 4.35
257 258 1.161843 GCAAGCTAACGGTAAAGCCA 58.838 50.000 10.73 0.00 39.64 4.75
258 259 1.743394 GCAAGCTAACGGTAAAGCCAT 59.257 47.619 10.73 0.29 39.64 4.40
259 260 2.223272 GCAAGCTAACGGTAAAGCCATC 60.223 50.000 10.73 0.00 39.64 3.51
260 261 2.327200 AGCTAACGGTAAAGCCATCC 57.673 50.000 10.73 0.00 39.64 3.51
261 262 1.838077 AGCTAACGGTAAAGCCATCCT 59.162 47.619 10.73 0.00 39.64 3.24
262 263 2.238898 AGCTAACGGTAAAGCCATCCTT 59.761 45.455 10.73 0.00 39.64 3.36
263 264 3.014623 GCTAACGGTAAAGCCATCCTTT 58.985 45.455 4.50 0.00 45.44 3.11
264 265 3.181500 GCTAACGGTAAAGCCATCCTTTG 60.181 47.826 4.50 0.00 43.43 2.77
265 266 1.173913 ACGGTAAAGCCATCCTTTGC 58.826 50.000 0.00 0.00 43.43 3.68
268 269 1.173913 GTAAAGCCATCCTTTGCCGT 58.826 50.000 0.00 0.00 43.43 5.68
269 270 1.132453 GTAAAGCCATCCTTTGCCGTC 59.868 52.381 0.00 0.00 43.43 4.79
270 271 0.539438 AAAGCCATCCTTTGCCGTCA 60.539 50.000 0.00 0.00 42.07 4.35
271 272 0.962356 AAGCCATCCTTTGCCGTCAG 60.962 55.000 0.00 0.00 0.00 3.51
272 273 3.056313 GCCATCCTTTGCCGTCAGC 62.056 63.158 0.00 0.00 44.14 4.26
273 274 1.377725 CCATCCTTTGCCGTCAGCT 60.378 57.895 0.00 0.00 44.23 4.24
277 278 1.375908 CCTTTGCCGTCAGCTAGCA 60.376 57.895 18.83 0.00 44.23 3.49
284 285 4.368756 GTCAGCTAGCAGACGACG 57.631 61.111 22.42 0.00 0.00 5.12
320 321 4.410099 TGGCAAATCTTCTGATTCCAGTT 58.590 39.130 0.00 0.00 41.62 3.16
342 343 3.773119 TGTGAAGTAGTCTAATCACCCCC 59.227 47.826 17.91 2.12 41.08 5.40
364 365 4.218852 CCCCCTCTAGACATACTTTCGATC 59.781 50.000 0.00 0.00 0.00 3.69
379 380 0.179171 CGATCCTACACGAGCGTTGT 60.179 55.000 0.00 0.00 36.92 3.32
381 382 0.179171 ATCCTACACGAGCGTTGTCG 60.179 55.000 0.00 2.95 45.76 4.35
392 393 3.712881 GTTGTCGCTGCGTCCCAC 61.713 66.667 22.48 13.05 0.00 4.61
439 440 2.784596 CGCCATGTTTGCGTCGAT 59.215 55.556 6.66 0.00 46.59 3.59
464 465 2.037367 CACGAGGAGTGGAGGGGA 59.963 66.667 0.00 0.00 46.77 4.81
465 466 2.055042 CACGAGGAGTGGAGGGGAG 61.055 68.421 0.00 0.00 46.77 4.30
466 467 2.360980 CGAGGAGTGGAGGGGAGT 59.639 66.667 0.00 0.00 0.00 3.85
467 468 2.055042 CGAGGAGTGGAGGGGAGTG 61.055 68.421 0.00 0.00 0.00 3.51
468 469 1.687493 GAGGAGTGGAGGGGAGTGG 60.687 68.421 0.00 0.00 0.00 4.00
469 470 2.169590 GAGGAGTGGAGGGGAGTGGA 62.170 65.000 0.00 0.00 0.00 4.02
483 484 1.205893 GAGTGGAGTGAAGTGGCTAGG 59.794 57.143 0.00 0.00 0.00 3.02
492 493 4.472833 AGTGAAGTGGCTAGGATTTGATCT 59.527 41.667 0.00 0.00 0.00 2.75
493 494 4.574013 GTGAAGTGGCTAGGATTTGATCTG 59.426 45.833 0.00 0.00 0.00 2.90
495 496 2.158696 AGTGGCTAGGATTTGATCTGGC 60.159 50.000 0.00 0.00 36.87 4.85
499 500 2.411904 CTAGGATTTGATCTGGCGAGC 58.588 52.381 0.00 0.00 0.00 5.03
500 501 0.531532 AGGATTTGATCTGGCGAGCG 60.532 55.000 0.00 0.00 0.00 5.03
505 506 4.899239 GATCTGGCGAGCGGGTGG 62.899 72.222 0.00 0.00 0.00 4.61
517 518 2.572104 GAGCGGGTGGGAAGGAATATAT 59.428 50.000 0.00 0.00 0.00 0.86
523 524 3.397955 GGTGGGAAGGAATATATGTGGGT 59.602 47.826 0.00 0.00 0.00 4.51
524 525 4.506802 GGTGGGAAGGAATATATGTGGGTC 60.507 50.000 0.00 0.00 0.00 4.46
525 526 4.104102 GTGGGAAGGAATATATGTGGGTCA 59.896 45.833 0.00 0.00 0.00 4.02
528 529 4.351111 GGAAGGAATATATGTGGGTCAGGT 59.649 45.833 0.00 0.00 0.00 4.00
529 530 4.982241 AGGAATATATGTGGGTCAGGTG 57.018 45.455 0.00 0.00 0.00 4.00
563 564 2.960688 GCCCGGATGCCCTCCTATC 61.961 68.421 0.73 0.00 42.47 2.08
571 572 0.188587 TGCCCTCCTATCCGTCTCAT 59.811 55.000 0.00 0.00 0.00 2.90
574 575 2.691011 GCCCTCCTATCCGTCTCATATC 59.309 54.545 0.00 0.00 0.00 1.63
581 582 5.014860 TCCTATCCGTCTCATATCTGGGTTA 59.985 44.000 0.00 0.00 0.00 2.85
590 591 8.244802 CGTCTCATATCTGGGTTAGTTATTAGG 58.755 40.741 0.00 0.00 0.00 2.69
617 618 2.810486 GTCAGTCCGACCGTTTGAG 58.190 57.895 0.00 0.00 38.85 3.02
619 620 2.027625 CAGTCCGACCGTTTGAGGC 61.028 63.158 0.00 0.00 33.69 4.70
620 621 2.741211 GTCCGACCGTTTGAGGCC 60.741 66.667 0.00 0.00 33.69 5.19
621 622 4.011517 TCCGACCGTTTGAGGCCC 62.012 66.667 0.00 0.00 33.69 5.80
623 624 4.675029 CGACCGTTTGAGGCCCGT 62.675 66.667 0.00 0.00 33.69 5.28
624 625 2.281276 GACCGTTTGAGGCCCGTT 60.281 61.111 0.00 0.00 33.69 4.44
625 626 1.895231 GACCGTTTGAGGCCCGTTT 60.895 57.895 0.00 0.00 33.69 3.60
626 627 2.125202 GACCGTTTGAGGCCCGTTTG 62.125 60.000 0.00 0.00 33.69 2.93
627 628 1.894756 CCGTTTGAGGCCCGTTTGA 60.895 57.895 0.00 0.00 0.00 2.69
628 629 1.574428 CGTTTGAGGCCCGTTTGAG 59.426 57.895 0.00 0.00 0.00 3.02
629 630 1.852067 CGTTTGAGGCCCGTTTGAGG 61.852 60.000 0.00 0.00 0.00 3.86
639 640 2.372690 CGTTTGAGGCGTCCGTCTG 61.373 63.158 0.00 0.00 0.00 3.51
658 659 3.052036 CTGGGTCAAAATTTTGCGACTG 58.948 45.455 23.36 15.09 38.05 3.51
661 662 3.049912 GGTCAAAATTTTGCGACTGGAC 58.950 45.455 23.36 14.85 38.05 4.02
670 671 2.916052 GCGACTGGACAGTGACCGA 61.916 63.158 10.08 0.00 42.66 4.69
694 695 2.025727 CGCCCGGACGTATGAGAC 59.974 66.667 0.73 0.00 0.00 3.36
770 771 4.277174 TCAACGTGCACCATACAATTTTCT 59.723 37.500 12.15 0.00 0.00 2.52
777 778 5.769662 TGCACCATACAATTTTCTTGACTCT 59.230 36.000 0.00 0.00 0.00 3.24
812 813 8.659925 TTTGCAATGTGATTCTGTTTTGTAAT 57.340 26.923 0.00 0.00 0.00 1.89
949 1831 3.147595 CTCGGATCCGGAGTGGCA 61.148 66.667 32.79 11.72 40.25 4.92
959 1841 1.679311 GGAGTGGCATGTGTCCTCA 59.321 57.895 0.00 0.00 0.00 3.86
1087 1998 3.472943 ATCCAGATCCAGCAGCGGC 62.473 63.158 0.00 0.00 41.61 6.53
1376 2293 0.741326 CGGACGACATCTCTGTGGAT 59.259 55.000 0.00 0.00 35.14 3.41
1379 2296 2.363680 GGACGACATCTCTGTGGATGAT 59.636 50.000 15.78 5.10 44.01 2.45
1396 2313 0.868406 GATGTATGCAACGGCCTAGC 59.132 55.000 0.00 2.07 40.13 3.42
1430 2347 2.351276 GTGGTCAATCCCGCCACT 59.649 61.111 5.77 0.00 46.57 4.00
1470 2387 3.866582 CACGCCCATCTCCTCCCC 61.867 72.222 0.00 0.00 0.00 4.81
1482 2523 4.740822 CTCCCCTGGGGTTTGGCG 62.741 72.222 30.69 10.05 44.74 5.69
1645 2686 1.079197 CGCTGTGTACTGGCATGGA 60.079 57.895 0.00 0.00 0.00 3.41
1681 2722 6.658816 TGCACTGTCATTTTGTTATGAGGTAT 59.341 34.615 0.00 0.00 35.32 2.73
1682 2723 7.826744 TGCACTGTCATTTTGTTATGAGGTATA 59.173 33.333 0.00 0.00 35.32 1.47
1683 2724 8.122952 GCACTGTCATTTTGTTATGAGGTATAC 58.877 37.037 0.00 0.00 35.32 1.47
1684 2725 9.383519 CACTGTCATTTTGTTATGAGGTATACT 57.616 33.333 2.25 0.00 35.32 2.12
1685 2726 9.383519 ACTGTCATTTTGTTATGAGGTATACTG 57.616 33.333 2.25 0.00 35.32 2.74
1686 2727 9.383519 CTGTCATTTTGTTATGAGGTATACTGT 57.616 33.333 2.25 0.00 35.32 3.55
1884 2940 0.895559 GGGCACAGGTTCTTCTTGGG 60.896 60.000 0.00 0.00 0.00 4.12
1932 2988 3.442625 CAGCACTTGATGGTCAATGTCAT 59.557 43.478 0.00 0.00 36.72 3.06
1978 3037 1.810606 CTGCGGTCAGAGTGAGTGGT 61.811 60.000 0.00 0.00 42.95 4.16
2098 3157 9.953565 ATCCAGCTATTTACAGTACAGTAAAAA 57.046 29.630 22.49 7.96 44.41 1.94
2156 3215 3.040147 TGAAACTAGACTTGAAGGGCG 57.960 47.619 0.00 0.00 0.00 6.13
2296 3355 2.028733 GGCAACATGCGCCCAAAAG 61.029 57.895 14.49 0.00 46.21 2.27
2364 3423 1.002274 ACCTTGTTTGTTGGGCCCA 59.998 52.632 24.45 24.45 0.00 5.36
2374 3433 4.338795 TTGTTGGGCCCATAATAAGGAA 57.661 40.909 29.23 3.48 0.00 3.36
2649 3714 3.077229 TGCAAGAAATGTTGTGGTTCG 57.923 42.857 0.00 0.00 0.00 3.95
2652 3717 0.591170 AGAAATGTTGTGGTTCGCCG 59.409 50.000 0.00 0.00 41.18 6.46
2659 3724 1.659098 GTTGTGGTTCGCCGATTCTAG 59.341 52.381 0.00 0.00 41.18 2.43
2727 3792 9.003658 AGTTTCATTCTCTACATTACAACCAAG 57.996 33.333 0.00 0.00 0.00 3.61
2780 3845 7.227116 ACAAATAAAGAATGCAAGCATGTGTTT 59.773 29.630 8.50 10.55 36.68 2.83
2794 3859 7.042797 AGCATGTGTTTAATCAGACAGTTTT 57.957 32.000 0.00 0.00 0.00 2.43
2801 3867 7.908601 GTGTTTAATCAGACAGTTTTCGTTTCT 59.091 33.333 0.00 0.00 0.00 2.52
2833 3899 1.808945 GTCTCAAATGCAGACACCCAG 59.191 52.381 0.00 0.00 40.18 4.45
2872 3938 8.031864 AGTCTCTATGTTCGGATAAATATGCAG 58.968 37.037 0.00 0.00 0.00 4.41
2878 3944 6.119536 TGTTCGGATAAATATGCAGGTCTTT 58.880 36.000 0.00 0.00 0.00 2.52
2891 3957 3.815401 GCAGGTCTTTTTCAAGTAGAGCA 59.185 43.478 0.00 0.00 38.52 4.26
2892 3958 4.083590 GCAGGTCTTTTTCAAGTAGAGCAG 60.084 45.833 0.00 0.00 38.52 4.24
2893 3959 5.059833 CAGGTCTTTTTCAAGTAGAGCAGT 58.940 41.667 0.00 0.00 38.52 4.40
2894 3960 5.178438 CAGGTCTTTTTCAAGTAGAGCAGTC 59.822 44.000 0.00 0.00 38.52 3.51
2895 3961 5.071115 AGGTCTTTTTCAAGTAGAGCAGTCT 59.929 40.000 0.00 0.00 38.52 3.24
2896 3962 5.178438 GGTCTTTTTCAAGTAGAGCAGTCTG 59.822 44.000 0.00 0.00 36.64 3.51
2897 3963 5.986135 GTCTTTTTCAAGTAGAGCAGTCTGA 59.014 40.000 3.32 0.00 33.84 3.27
2898 3964 6.145371 GTCTTTTTCAAGTAGAGCAGTCTGAG 59.855 42.308 3.32 0.00 33.84 3.35
2899 3965 3.584406 TTCAAGTAGAGCAGTCTGAGC 57.416 47.619 3.32 0.00 33.84 4.26
3062 4132 6.472887 TCAGGTAAAAATCGAACTGGAAGAT 58.527 36.000 0.00 0.00 37.43 2.40
3132 4231 3.510360 AGATTGTGTGCTTCGTACTACCT 59.490 43.478 0.00 0.00 0.00 3.08
3177 4276 4.202609 ACAATTGGATGTGAGACTTTCCCT 60.203 41.667 10.83 0.00 30.82 4.20
3193 4292 8.049721 AGACTTTCCCTAAGATAAATTGGTGAG 58.950 37.037 0.00 0.00 37.30 3.51
3217 4316 3.846588 ACAGGGTACAAGAAGATGGACAT 59.153 43.478 0.00 0.00 35.75 3.06
3218 4317 4.194640 CAGGGTACAAGAAGATGGACATG 58.805 47.826 0.00 0.00 35.75 3.21
3285 4384 3.845860 AGACTACTGTTCCAGTTCTCCA 58.154 45.455 1.74 0.00 42.59 3.86
3348 4447 3.123621 CACTTTGTGTTGATCGGTAGAGC 59.876 47.826 0.00 0.00 0.00 4.09
3362 4461 2.495669 GGTAGAGCTAGATCCATCCTGC 59.504 54.545 3.92 0.00 0.00 4.85
3509 4608 6.627395 AAACACAAGGATCAACATTAACGA 57.373 33.333 0.00 0.00 0.00 3.85
3569 4671 4.142425 GGAGAGAAGTTTAGAGTACGTGGG 60.142 50.000 0.00 0.00 0.00 4.61
3570 4672 3.762823 AGAGAAGTTTAGAGTACGTGGGG 59.237 47.826 0.00 0.00 0.00 4.96
3571 4673 2.830321 AGAAGTTTAGAGTACGTGGGGG 59.170 50.000 0.00 0.00 0.00 5.40
3572 4674 0.900421 AGTTTAGAGTACGTGGGGGC 59.100 55.000 0.00 0.00 0.00 5.80
3573 4675 0.459063 GTTTAGAGTACGTGGGGGCG 60.459 60.000 0.00 0.00 37.94 6.13
3574 4676 1.606885 TTTAGAGTACGTGGGGGCGG 61.607 60.000 0.00 0.00 35.98 6.13
3575 4677 2.497792 TTAGAGTACGTGGGGGCGGA 62.498 60.000 0.00 0.00 35.98 5.54
3576 4678 4.139234 GAGTACGTGGGGGCGGAC 62.139 72.222 0.00 0.00 45.38 4.79
3578 4680 3.777910 GTACGTGGGGGCGGACAT 61.778 66.667 0.00 0.00 44.49 3.06
3579 4681 3.004354 TACGTGGGGGCGGACATT 61.004 61.111 0.00 0.00 35.98 2.71
3580 4682 1.685077 TACGTGGGGGCGGACATTA 60.685 57.895 0.00 0.00 35.98 1.90
3581 4683 1.263342 TACGTGGGGGCGGACATTAA 61.263 55.000 0.00 0.00 35.98 1.40
3582 4684 1.377463 CGTGGGGGCGGACATTAAA 60.377 57.895 0.00 0.00 0.00 1.52
3583 4685 0.961358 CGTGGGGGCGGACATTAAAA 60.961 55.000 0.00 0.00 0.00 1.52
3584 4686 1.480789 GTGGGGGCGGACATTAAAAT 58.519 50.000 0.00 0.00 0.00 1.82
3585 4687 1.136110 GTGGGGGCGGACATTAAAATG 59.864 52.381 1.13 1.13 42.10 2.32
3605 4707 3.518634 GTGACACCACACAAACCATTT 57.481 42.857 0.00 0.00 42.72 2.32
3606 4708 4.640789 GTGACACCACACAAACCATTTA 57.359 40.909 0.00 0.00 42.72 1.40
3607 4709 5.000012 GTGACACCACACAAACCATTTAA 58.000 39.130 0.00 0.00 42.72 1.52
3608 4710 4.801516 GTGACACCACACAAACCATTTAAC 59.198 41.667 0.00 0.00 42.72 2.01
3609 4711 4.707448 TGACACCACACAAACCATTTAACT 59.293 37.500 0.00 0.00 0.00 2.24
3610 4712 5.186021 TGACACCACACAAACCATTTAACTT 59.814 36.000 0.00 0.00 0.00 2.66
3611 4713 5.415221 ACACCACACAAACCATTTAACTTG 58.585 37.500 0.00 0.00 0.00 3.16
3612 4714 4.808364 CACCACACAAACCATTTAACTTGG 59.192 41.667 2.68 2.68 40.26 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.157476 ACAAGAGACACAAGATTTATACTGGTT 58.843 33.333 0.00 0.00 0.00 3.67
1 2 7.604164 CACAAGAGACACAAGATTTATACTGGT 59.396 37.037 0.00 0.00 0.00 4.00
2 3 7.604164 ACACAAGAGACACAAGATTTATACTGG 59.396 37.037 0.00 0.00 0.00 4.00
3 4 8.539770 ACACAAGAGACACAAGATTTATACTG 57.460 34.615 0.00 0.00 0.00 2.74
4 5 8.993121 CAACACAAGAGACACAAGATTTATACT 58.007 33.333 0.00 0.00 0.00 2.12
5 6 7.746475 GCAACACAAGAGACACAAGATTTATAC 59.254 37.037 0.00 0.00 0.00 1.47
6 7 7.360017 CGCAACACAAGAGACACAAGATTTATA 60.360 37.037 0.00 0.00 0.00 0.98
7 8 6.566564 CGCAACACAAGAGACACAAGATTTAT 60.567 38.462 0.00 0.00 0.00 1.40
8 9 5.277297 CGCAACACAAGAGACACAAGATTTA 60.277 40.000 0.00 0.00 0.00 1.40
9 10 4.496341 CGCAACACAAGAGACACAAGATTT 60.496 41.667 0.00 0.00 0.00 2.17
10 11 3.002656 CGCAACACAAGAGACACAAGATT 59.997 43.478 0.00 0.00 0.00 2.40
11 12 2.545526 CGCAACACAAGAGACACAAGAT 59.454 45.455 0.00 0.00 0.00 2.40
12 13 1.933181 CGCAACACAAGAGACACAAGA 59.067 47.619 0.00 0.00 0.00 3.02
13 14 1.933181 TCGCAACACAAGAGACACAAG 59.067 47.619 0.00 0.00 0.00 3.16
14 15 1.933181 CTCGCAACACAAGAGACACAA 59.067 47.619 0.00 0.00 34.13 3.33
15 16 1.134818 ACTCGCAACACAAGAGACACA 60.135 47.619 0.00 0.00 36.03 3.72
16 17 1.571919 ACTCGCAACACAAGAGACAC 58.428 50.000 0.00 0.00 36.03 3.67
17 18 2.201732 GAACTCGCAACACAAGAGACA 58.798 47.619 0.00 0.00 36.03 3.41
18 19 1.190323 CGAACTCGCAACACAAGAGAC 59.810 52.381 0.00 0.00 36.03 3.36
19 20 1.487482 CGAACTCGCAACACAAGAGA 58.513 50.000 0.00 0.00 36.03 3.10
31 32 2.652496 GCTAGCTCGGCGAACTCG 60.652 66.667 17.01 11.76 43.27 4.18
32 33 2.278923 GGCTAGCTCGGCGAACTC 60.279 66.667 17.01 3.20 0.00 3.01
33 34 1.035932 TAAGGCTAGCTCGGCGAACT 61.036 55.000 17.64 17.64 34.19 3.01
34 35 0.595310 CTAAGGCTAGCTCGGCGAAC 60.595 60.000 15.72 6.62 34.19 3.95
35 36 0.750546 TCTAAGGCTAGCTCGGCGAA 60.751 55.000 15.72 0.00 34.19 4.70
36 37 1.153025 TCTAAGGCTAGCTCGGCGA 60.153 57.895 15.72 10.14 34.19 5.54
37 38 1.167155 TCTCTAAGGCTAGCTCGGCG 61.167 60.000 15.72 0.00 34.19 6.46
38 39 1.201414 GATCTCTAAGGCTAGCTCGGC 59.799 57.143 15.72 3.28 0.00 5.54
39 40 1.466950 CGATCTCTAAGGCTAGCTCGG 59.533 57.143 15.72 3.11 0.00 4.63
40 41 2.147958 ACGATCTCTAAGGCTAGCTCG 58.852 52.381 15.72 15.16 32.33 5.03
41 42 3.126343 GCTACGATCTCTAAGGCTAGCTC 59.874 52.174 15.72 4.82 0.00 4.09
42 43 3.078837 GCTACGATCTCTAAGGCTAGCT 58.921 50.000 15.72 0.00 0.00 3.32
43 44 2.159626 CGCTACGATCTCTAAGGCTAGC 60.160 54.545 6.04 6.04 0.00 3.42
44 45 3.327626 TCGCTACGATCTCTAAGGCTAG 58.672 50.000 0.00 0.00 0.00 3.42
45 46 3.327626 CTCGCTACGATCTCTAAGGCTA 58.672 50.000 0.00 0.00 34.61 3.93
46 47 2.147958 CTCGCTACGATCTCTAAGGCT 58.852 52.381 0.00 0.00 34.61 4.58
47 48 1.198178 CCTCGCTACGATCTCTAAGGC 59.802 57.143 0.00 0.00 34.61 4.35
48 49 2.496111 ACCTCGCTACGATCTCTAAGG 58.504 52.381 0.00 0.00 34.61 2.69
49 50 5.334260 CCTTAACCTCGCTACGATCTCTAAG 60.334 48.000 0.00 0.00 34.61 2.18
50 51 4.514441 CCTTAACCTCGCTACGATCTCTAA 59.486 45.833 0.00 0.00 34.61 2.10
51 52 4.063689 CCTTAACCTCGCTACGATCTCTA 58.936 47.826 0.00 0.00 34.61 2.43
52 53 2.879646 CCTTAACCTCGCTACGATCTCT 59.120 50.000 0.00 0.00 34.61 3.10
53 54 2.030981 CCCTTAACCTCGCTACGATCTC 60.031 54.545 0.00 0.00 34.61 2.75
54 55 1.955080 CCCTTAACCTCGCTACGATCT 59.045 52.381 0.00 0.00 34.61 2.75
55 56 1.680207 ACCCTTAACCTCGCTACGATC 59.320 52.381 0.00 0.00 34.61 3.69
56 57 1.407979 CACCCTTAACCTCGCTACGAT 59.592 52.381 0.00 0.00 34.61 3.73
57 58 0.813184 CACCCTTAACCTCGCTACGA 59.187 55.000 0.00 0.00 0.00 3.43
58 59 0.529378 ACACCCTTAACCTCGCTACG 59.471 55.000 0.00 0.00 0.00 3.51
59 60 1.405121 CCACACCCTTAACCTCGCTAC 60.405 57.143 0.00 0.00 0.00 3.58
60 61 0.899720 CCACACCCTTAACCTCGCTA 59.100 55.000 0.00 0.00 0.00 4.26
61 62 1.125711 ACCACACCCTTAACCTCGCT 61.126 55.000 0.00 0.00 0.00 4.93
62 63 0.250597 AACCACACCCTTAACCTCGC 60.251 55.000 0.00 0.00 0.00 5.03
63 64 1.804601 GAACCACACCCTTAACCTCG 58.195 55.000 0.00 0.00 0.00 4.63
64 65 1.609841 CCGAACCACACCCTTAACCTC 60.610 57.143 0.00 0.00 0.00 3.85
65 66 0.399075 CCGAACCACACCCTTAACCT 59.601 55.000 0.00 0.00 0.00 3.50
66 67 0.109153 ACCGAACCACACCCTTAACC 59.891 55.000 0.00 0.00 0.00 2.85
67 68 2.613725 CCTACCGAACCACACCCTTAAC 60.614 54.545 0.00 0.00 0.00 2.01
68 69 1.624813 CCTACCGAACCACACCCTTAA 59.375 52.381 0.00 0.00 0.00 1.85
69 70 1.269012 CCTACCGAACCACACCCTTA 58.731 55.000 0.00 0.00 0.00 2.69
70 71 1.486145 CCCTACCGAACCACACCCTT 61.486 60.000 0.00 0.00 0.00 3.95
71 72 1.916777 CCCTACCGAACCACACCCT 60.917 63.158 0.00 0.00 0.00 4.34
72 73 2.666812 CCCTACCGAACCACACCC 59.333 66.667 0.00 0.00 0.00 4.61
73 74 2.666812 CCCCTACCGAACCACACC 59.333 66.667 0.00 0.00 0.00 4.16
74 75 1.896122 CTCCCCCTACCGAACCACAC 61.896 65.000 0.00 0.00 0.00 3.82
75 76 1.611261 CTCCCCCTACCGAACCACA 60.611 63.158 0.00 0.00 0.00 4.17
76 77 0.690077 ATCTCCCCCTACCGAACCAC 60.690 60.000 0.00 0.00 0.00 4.16
77 78 0.398098 GATCTCCCCCTACCGAACCA 60.398 60.000 0.00 0.00 0.00 3.67
78 79 0.105607 AGATCTCCCCCTACCGAACC 60.106 60.000 0.00 0.00 0.00 3.62
79 80 1.687660 GAAGATCTCCCCCTACCGAAC 59.312 57.143 0.00 0.00 0.00 3.95
80 81 1.289830 TGAAGATCTCCCCCTACCGAA 59.710 52.381 0.00 0.00 0.00 4.30
81 82 0.931468 TGAAGATCTCCCCCTACCGA 59.069 55.000 0.00 0.00 0.00 4.69
82 83 1.620819 CATGAAGATCTCCCCCTACCG 59.379 57.143 0.00 0.00 0.00 4.02
83 84 1.349357 GCATGAAGATCTCCCCCTACC 59.651 57.143 0.00 0.00 0.00 3.18
84 85 1.001406 CGCATGAAGATCTCCCCCTAC 59.999 57.143 0.00 0.00 0.00 3.18
85 86 1.342074 CGCATGAAGATCTCCCCCTA 58.658 55.000 0.00 0.00 0.00 3.53
86 87 2.049627 GCGCATGAAGATCTCCCCCT 62.050 60.000 0.30 0.00 0.00 4.79
87 88 1.599240 GCGCATGAAGATCTCCCCC 60.599 63.158 0.30 0.00 0.00 5.40
88 89 1.146930 TGCGCATGAAGATCTCCCC 59.853 57.895 5.66 0.00 0.00 4.81
89 90 1.162800 GGTGCGCATGAAGATCTCCC 61.163 60.000 15.91 1.08 0.00 4.30
90 91 1.162800 GGGTGCGCATGAAGATCTCC 61.163 60.000 15.91 6.33 0.00 3.71
91 92 1.162800 GGGGTGCGCATGAAGATCTC 61.163 60.000 15.91 0.00 0.00 2.75
92 93 1.153086 GGGGTGCGCATGAAGATCT 60.153 57.895 15.91 0.00 0.00 2.75
93 94 1.031571 TTGGGGTGCGCATGAAGATC 61.032 55.000 15.91 0.00 0.00 2.75
94 95 0.396139 ATTGGGGTGCGCATGAAGAT 60.396 50.000 15.91 2.76 0.00 2.40
95 96 1.001020 ATTGGGGTGCGCATGAAGA 60.001 52.632 15.91 0.00 0.00 2.87
96 97 1.140161 CATTGGGGTGCGCATGAAG 59.860 57.895 15.91 0.00 0.00 3.02
97 98 1.184322 AACATTGGGGTGCGCATGAA 61.184 50.000 15.91 4.46 0.00 2.57
98 99 1.594194 GAACATTGGGGTGCGCATGA 61.594 55.000 15.91 0.00 0.00 3.07
99 100 1.153784 GAACATTGGGGTGCGCATG 60.154 57.895 15.91 9.47 0.00 4.06
100 101 2.699768 CGAACATTGGGGTGCGCAT 61.700 57.895 15.91 0.00 32.22 4.73
101 102 3.361158 CGAACATTGGGGTGCGCA 61.361 61.111 5.66 5.66 32.22 6.09
102 103 2.622011 TTCGAACATTGGGGTGCGC 61.622 57.895 0.00 0.00 39.71 6.09
103 104 1.209127 GTTCGAACATTGGGGTGCG 59.791 57.895 23.12 0.00 41.27 5.34
104 105 0.893727 AGGTTCGAACATTGGGGTGC 60.894 55.000 28.24 8.76 0.00 5.01
105 106 1.269448 CAAGGTTCGAACATTGGGGTG 59.731 52.381 35.82 19.26 44.37 4.61
106 107 1.616159 CAAGGTTCGAACATTGGGGT 58.384 50.000 35.82 12.31 44.37 4.95
107 108 1.812571 CTCAAGGTTCGAACATTGGGG 59.187 52.381 39.39 30.84 44.84 4.96
121 122 0.825840 TTCCGGCAAAACCCTCAAGG 60.826 55.000 0.00 0.00 43.78 3.61
122 123 0.313987 GTTCCGGCAAAACCCTCAAG 59.686 55.000 0.00 0.00 33.26 3.02
123 124 1.110518 GGTTCCGGCAAAACCCTCAA 61.111 55.000 11.64 0.00 40.29 3.02
124 125 1.529713 GGTTCCGGCAAAACCCTCA 60.530 57.895 11.64 0.00 40.29 3.86
125 126 3.362262 GGTTCCGGCAAAACCCTC 58.638 61.111 11.64 0.00 40.29 4.30
137 138 0.744771 GCTGTTGGATCTCGGGTTCC 60.745 60.000 5.37 5.37 33.21 3.62
138 139 0.744771 GGCTGTTGGATCTCGGGTTC 60.745 60.000 0.00 0.00 0.00 3.62
139 140 1.299976 GGCTGTTGGATCTCGGGTT 59.700 57.895 0.00 0.00 0.00 4.11
140 141 2.990479 GGCTGTTGGATCTCGGGT 59.010 61.111 0.00 0.00 0.00 5.28
141 142 2.202932 CGGCTGTTGGATCTCGGG 60.203 66.667 0.00 0.00 0.00 5.14
142 143 1.519455 GACGGCTGTTGGATCTCGG 60.519 63.158 0.00 0.00 0.00 4.63
143 144 0.803768 CAGACGGCTGTTGGATCTCG 60.804 60.000 11.12 0.00 37.37 4.04
144 145 1.086634 GCAGACGGCTGTTGGATCTC 61.087 60.000 21.75 0.00 44.17 2.75
145 146 1.078848 GCAGACGGCTGTTGGATCT 60.079 57.895 21.75 0.00 44.17 2.75
146 147 3.490890 GCAGACGGCTGTTGGATC 58.509 61.111 21.75 0.00 44.17 3.36
160 161 3.067461 ACCTCTTTATCGTCTGCTAGCAG 59.933 47.826 34.48 34.48 44.86 4.24
161 162 3.024547 ACCTCTTTATCGTCTGCTAGCA 58.975 45.455 18.22 18.22 0.00 3.49
162 163 3.376540 CACCTCTTTATCGTCTGCTAGC 58.623 50.000 8.10 8.10 0.00 3.42
163 164 3.797184 GCCACCTCTTTATCGTCTGCTAG 60.797 52.174 0.00 0.00 0.00 3.42
164 165 2.100916 GCCACCTCTTTATCGTCTGCTA 59.899 50.000 0.00 0.00 0.00 3.49
165 166 1.134670 GCCACCTCTTTATCGTCTGCT 60.135 52.381 0.00 0.00 0.00 4.24
166 167 1.134670 AGCCACCTCTTTATCGTCTGC 60.135 52.381 0.00 0.00 0.00 4.26
167 168 2.166459 TCAGCCACCTCTTTATCGTCTG 59.834 50.000 0.00 0.00 0.00 3.51
168 169 2.457598 TCAGCCACCTCTTTATCGTCT 58.542 47.619 0.00 0.00 0.00 4.18
169 170 2.961526 TCAGCCACCTCTTTATCGTC 57.038 50.000 0.00 0.00 0.00 4.20
170 171 2.158900 CCATCAGCCACCTCTTTATCGT 60.159 50.000 0.00 0.00 0.00 3.73
171 172 2.487934 CCATCAGCCACCTCTTTATCG 58.512 52.381 0.00 0.00 0.00 2.92
172 173 2.225467 GCCATCAGCCACCTCTTTATC 58.775 52.381 0.00 0.00 34.35 1.75
173 174 1.565759 TGCCATCAGCCACCTCTTTAT 59.434 47.619 0.00 0.00 42.71 1.40
174 175 0.991146 TGCCATCAGCCACCTCTTTA 59.009 50.000 0.00 0.00 42.71 1.85
175 176 0.112995 TTGCCATCAGCCACCTCTTT 59.887 50.000 0.00 0.00 42.71 2.52
176 177 0.112995 TTTGCCATCAGCCACCTCTT 59.887 50.000 0.00 0.00 42.71 2.85
177 178 0.333993 ATTTGCCATCAGCCACCTCT 59.666 50.000 0.00 0.00 42.71 3.69
178 179 2.057137 TATTTGCCATCAGCCACCTC 57.943 50.000 0.00 0.00 42.71 3.85
179 180 2.313317 CATATTTGCCATCAGCCACCT 58.687 47.619 0.00 0.00 42.71 4.00
180 181 2.034124 ACATATTTGCCATCAGCCACC 58.966 47.619 0.00 0.00 42.71 4.61
181 182 3.382546 AGAACATATTTGCCATCAGCCAC 59.617 43.478 0.00 0.00 42.71 5.01
182 183 3.634504 AGAACATATTTGCCATCAGCCA 58.365 40.909 0.00 0.00 42.71 4.75
183 184 4.660789 AAGAACATATTTGCCATCAGCC 57.339 40.909 0.00 0.00 42.71 4.85
184 185 5.961395 CAAAGAACATATTTGCCATCAGC 57.039 39.130 0.00 0.00 44.14 4.26
192 193 4.807304 GGCTGATGGCAAAGAACATATTTG 59.193 41.667 4.85 0.00 44.01 2.32
193 194 4.467082 TGGCTGATGGCAAAGAACATATTT 59.533 37.500 4.85 0.00 46.03 1.40
194 195 4.025360 TGGCTGATGGCAAAGAACATATT 58.975 39.130 4.85 0.00 46.03 1.28
195 196 3.634504 TGGCTGATGGCAAAGAACATAT 58.365 40.909 4.85 0.00 46.03 1.78
196 197 3.084536 TGGCTGATGGCAAAGAACATA 57.915 42.857 4.85 0.00 46.03 2.29
197 198 1.927487 TGGCTGATGGCAAAGAACAT 58.073 45.000 4.85 0.00 46.03 2.71
198 199 3.435846 TGGCTGATGGCAAAGAACA 57.564 47.368 4.85 0.71 46.03 3.18
205 206 0.963856 CAAAGAGCTGGCTGATGGCA 60.964 55.000 0.00 0.00 46.87 4.92
206 207 1.807886 CAAAGAGCTGGCTGATGGC 59.192 57.895 0.00 0.00 40.90 4.40
207 208 1.664321 GGCAAAGAGCTGGCTGATGG 61.664 60.000 0.00 0.00 44.79 3.51
208 209 1.807886 GGCAAAGAGCTGGCTGATG 59.192 57.895 0.00 0.00 44.79 3.07
209 210 1.748122 CGGCAAAGAGCTGGCTGAT 60.748 57.895 0.00 0.00 46.20 2.90
210 211 2.359107 CGGCAAAGAGCTGGCTGA 60.359 61.111 0.00 0.00 46.20 4.26
216 217 2.959507 AAAACAAACGGCAAAGAGCT 57.040 40.000 0.00 0.00 44.79 4.09
233 234 4.045783 GCTTTACCGTTAGCTTGCAAAAA 58.954 39.130 0.00 0.00 34.57 1.94
234 235 3.551250 GGCTTTACCGTTAGCTTGCAAAA 60.551 43.478 0.00 0.00 37.54 2.44
235 236 2.030628 GGCTTTACCGTTAGCTTGCAAA 60.031 45.455 0.00 0.00 37.54 3.68
236 237 1.538075 GGCTTTACCGTTAGCTTGCAA 59.462 47.619 0.00 0.00 37.54 4.08
237 238 1.161843 GGCTTTACCGTTAGCTTGCA 58.838 50.000 0.00 0.00 37.54 4.08
238 239 1.161843 TGGCTTTACCGTTAGCTTGC 58.838 50.000 0.00 0.00 43.94 4.01
239 240 2.354821 GGATGGCTTTACCGTTAGCTTG 59.645 50.000 0.00 0.00 43.94 4.01
240 241 2.238898 AGGATGGCTTTACCGTTAGCTT 59.761 45.455 0.00 0.00 43.94 3.74
241 242 1.838077 AGGATGGCTTTACCGTTAGCT 59.162 47.619 0.00 0.00 43.94 3.32
242 243 2.327200 AGGATGGCTTTACCGTTAGC 57.673 50.000 0.00 0.00 43.94 3.09
243 244 3.181500 GCAAAGGATGGCTTTACCGTTAG 60.181 47.826 0.00 0.00 43.94 2.34
244 245 2.750712 GCAAAGGATGGCTTTACCGTTA 59.249 45.455 0.00 0.00 43.94 3.18
245 246 1.544246 GCAAAGGATGGCTTTACCGTT 59.456 47.619 0.00 0.00 43.94 4.44
246 247 1.173913 GCAAAGGATGGCTTTACCGT 58.826 50.000 0.00 0.00 43.94 4.83
255 256 0.107703 TAGCTGACGGCAAAGGATGG 60.108 55.000 9.39 0.00 44.79 3.51
256 257 1.293924 CTAGCTGACGGCAAAGGATG 58.706 55.000 9.39 0.00 44.79 3.51
257 258 0.462759 GCTAGCTGACGGCAAAGGAT 60.463 55.000 7.70 0.00 44.79 3.24
258 259 1.079127 GCTAGCTGACGGCAAAGGA 60.079 57.895 7.70 0.00 44.79 3.36
259 260 1.364626 CTGCTAGCTGACGGCAAAGG 61.365 60.000 17.23 0.00 44.79 3.11
260 261 0.390340 TCTGCTAGCTGACGGCAAAG 60.390 55.000 19.26 6.65 44.79 2.77
261 262 0.670546 GTCTGCTAGCTGACGGCAAA 60.671 55.000 30.98 5.98 44.79 3.68
262 263 1.079819 GTCTGCTAGCTGACGGCAA 60.080 57.895 30.98 6.66 44.79 4.52
263 264 2.573869 GTCTGCTAGCTGACGGCA 59.426 61.111 30.98 7.33 44.79 5.69
267 268 0.168348 TTCGTCGTCTGCTAGCTGAC 59.832 55.000 33.23 33.23 40.15 3.51
268 269 0.448197 CTTCGTCGTCTGCTAGCTGA 59.552 55.000 19.26 19.26 0.00 4.26
269 270 0.448197 TCTTCGTCGTCTGCTAGCTG 59.552 55.000 17.23 16.05 0.00 4.24
270 271 1.131504 CTTCTTCGTCGTCTGCTAGCT 59.868 52.381 17.23 0.00 0.00 3.32
271 272 1.135632 ACTTCTTCGTCGTCTGCTAGC 60.136 52.381 8.10 8.10 0.00 3.42
272 273 2.510874 CACTTCTTCGTCGTCTGCTAG 58.489 52.381 0.00 0.00 0.00 3.42
273 274 1.199327 CCACTTCTTCGTCGTCTGCTA 59.801 52.381 0.00 0.00 0.00 3.49
277 278 0.039074 CAGCCACTTCTTCGTCGTCT 60.039 55.000 0.00 0.00 0.00 4.18
282 283 0.674895 GCCATCAGCCACTTCTTCGT 60.675 55.000 0.00 0.00 34.35 3.85
284 285 1.538047 TTGCCATCAGCCACTTCTTC 58.462 50.000 0.00 0.00 42.71 2.87
309 310 5.788450 AGACTACTTCACAACTGGAATCAG 58.212 41.667 0.00 0.00 46.10 2.90
320 321 3.773119 GGGGGTGATTAGACTACTTCACA 59.227 47.826 19.22 0.45 36.29 3.58
342 343 4.218852 GGATCGAAAGTATGTCTAGAGGGG 59.781 50.000 0.00 0.00 0.00 4.79
343 344 5.074115 AGGATCGAAAGTATGTCTAGAGGG 58.926 45.833 0.00 0.00 0.00 4.30
344 345 6.711194 TGTAGGATCGAAAGTATGTCTAGAGG 59.289 42.308 0.00 0.00 0.00 3.69
345 346 7.569774 CGTGTAGGATCGAAAGTATGTCTAGAG 60.570 44.444 0.00 0.00 0.00 2.43
346 347 6.202379 CGTGTAGGATCGAAAGTATGTCTAGA 59.798 42.308 0.00 0.00 0.00 2.43
347 348 6.202379 TCGTGTAGGATCGAAAGTATGTCTAG 59.798 42.308 0.00 0.00 33.13 2.43
364 365 3.750162 CGACAACGCTCGTGTAGG 58.250 61.111 0.00 0.00 0.00 3.18
423 424 1.296867 CGATCGACGCAAACATGGC 60.297 57.895 10.26 0.00 34.51 4.40
459 460 0.838122 CCACTTCACTCCACTCCCCT 60.838 60.000 0.00 0.00 0.00 4.79
460 461 1.679898 CCACTTCACTCCACTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
461 462 1.003233 GCCACTTCACTCCACTCCC 60.003 63.158 0.00 0.00 0.00 4.30
462 463 1.205893 CTAGCCACTTCACTCCACTCC 59.794 57.143 0.00 0.00 0.00 3.85
463 464 1.205893 CCTAGCCACTTCACTCCACTC 59.794 57.143 0.00 0.00 0.00 3.51
464 465 1.203187 TCCTAGCCACTTCACTCCACT 60.203 52.381 0.00 0.00 0.00 4.00
465 466 1.267121 TCCTAGCCACTTCACTCCAC 58.733 55.000 0.00 0.00 0.00 4.02
466 467 2.254152 ATCCTAGCCACTTCACTCCA 57.746 50.000 0.00 0.00 0.00 3.86
467 468 3.055094 TCAAATCCTAGCCACTTCACTCC 60.055 47.826 0.00 0.00 0.00 3.85
468 469 4.207891 TCAAATCCTAGCCACTTCACTC 57.792 45.455 0.00 0.00 0.00 3.51
469 470 4.472833 AGATCAAATCCTAGCCACTTCACT 59.527 41.667 0.00 0.00 0.00 3.41
483 484 1.502163 CCCGCTCGCCAGATCAAATC 61.502 60.000 0.00 0.00 0.00 2.17
495 496 1.682451 TATTCCTTCCCACCCGCTCG 61.682 60.000 0.00 0.00 0.00 5.03
499 500 3.559171 CCACATATATTCCTTCCCACCCG 60.559 52.174 0.00 0.00 0.00 5.28
500 501 3.245264 CCCACATATATTCCTTCCCACCC 60.245 52.174 0.00 0.00 0.00 4.61
505 506 4.351111 ACCTGACCCACATATATTCCTTCC 59.649 45.833 0.00 0.00 0.00 3.46
552 553 0.188587 ATGAGACGGATAGGAGGGCA 59.811 55.000 0.00 0.00 0.00 5.36
563 564 4.939052 AACTAACCCAGATATGAGACGG 57.061 45.455 0.00 0.00 0.00 4.79
571 572 5.847817 CACCCCCTAATAACTAACCCAGATA 59.152 44.000 0.00 0.00 0.00 1.98
574 575 3.434596 GCACCCCCTAATAACTAACCCAG 60.435 52.174 0.00 0.00 0.00 4.45
581 582 0.622446 ACCGGCACCCCCTAATAACT 60.622 55.000 0.00 0.00 0.00 2.24
610 611 1.574428 CTCAAACGGGCCTCAAACG 59.426 57.895 0.84 0.00 0.00 3.60
619 620 4.675029 ACGGACGCCTCAAACGGG 62.675 66.667 0.00 0.00 34.00 5.28
620 621 3.110178 GACGGACGCCTCAAACGG 61.110 66.667 0.00 0.00 34.00 4.44
621 622 2.049433 AGACGGACGCCTCAAACG 60.049 61.111 0.00 0.00 0.00 3.60
622 623 2.027625 CCAGACGGACGCCTCAAAC 61.028 63.158 0.00 0.00 0.00 2.93
623 624 2.342279 CCAGACGGACGCCTCAAA 59.658 61.111 0.00 0.00 0.00 2.69
624 625 3.691342 CCCAGACGGACGCCTCAA 61.691 66.667 0.00 0.00 0.00 3.02
625 626 4.988716 ACCCAGACGGACGCCTCA 62.989 66.667 0.00 0.00 34.64 3.86
626 627 4.131088 GACCCAGACGGACGCCTC 62.131 72.222 0.00 0.00 34.64 4.70
627 628 4.988716 TGACCCAGACGGACGCCT 62.989 66.667 0.00 0.00 34.64 5.52
628 629 2.999739 TTTTGACCCAGACGGACGCC 63.000 60.000 0.00 0.00 34.64 5.68
629 630 0.953960 ATTTTGACCCAGACGGACGC 60.954 55.000 0.00 0.00 34.64 5.19
630 631 1.519408 AATTTTGACCCAGACGGACG 58.481 50.000 0.00 0.00 34.64 4.79
639 640 2.035321 TCCAGTCGCAAAATTTTGACCC 59.965 45.455 30.40 17.29 40.55 4.46
658 659 4.736896 GCGGGTCGGTCACTGTCC 62.737 72.222 0.00 0.00 0.00 4.02
694 695 1.219522 AACCGGACGCTTCAAACTCG 61.220 55.000 9.46 0.00 0.00 4.18
703 704 1.153628 GCATCTACAACCGGACGCT 60.154 57.895 9.46 0.00 0.00 5.07
704 705 0.739813 AAGCATCTACAACCGGACGC 60.740 55.000 9.46 0.00 0.00 5.19
708 709 4.693566 TGAACTAAAAGCATCTACAACCGG 59.306 41.667 0.00 0.00 0.00 5.28
747 748 4.277174 AGAAAATTGTATGGTGCACGTTGA 59.723 37.500 11.45 0.00 0.00 3.18
770 771 8.579006 ACATTGCAAAATTGATCTAAGAGTCAA 58.421 29.630 1.71 0.00 38.57 3.18
777 778 9.361315 CAGAATCACATTGCAAAATTGATCTAA 57.639 29.630 16.71 0.00 0.00 2.10
824 825 9.712305 TCTGATGTTTACAAAGGAAAACAAAAA 57.288 25.926 4.90 0.00 45.69 1.94
949 1831 6.066690 CAGGGATGATTTATTGAGGACACAT 58.933 40.000 0.00 0.00 0.00 3.21
959 1841 3.117888 ACCGCTCACAGGGATGATTTATT 60.118 43.478 0.00 0.00 0.00 1.40
1087 1998 3.017442 TGGTCCATCTCTCTACTTGTCG 58.983 50.000 0.00 0.00 0.00 4.35
1311 2228 2.514824 GCGGATTGCTGAGGGGTC 60.515 66.667 0.00 0.00 41.73 4.46
1334 2251 1.811266 CATGAAGTGGAGGTCGGCG 60.811 63.158 0.00 0.00 0.00 6.46
1376 2293 1.810031 GCTAGGCCGTTGCATACATCA 60.810 52.381 11.73 0.00 40.13 3.07
1379 2296 0.251916 AAGCTAGGCCGTTGCATACA 59.748 50.000 17.31 0.00 40.13 2.29
1396 2313 7.558161 TTGACCACATAATGATCTAGCAAAG 57.442 36.000 0.00 0.00 0.00 2.77
1430 2347 3.936203 AGGCTTGCCCAACGTCGA 61.936 61.111 8.17 0.00 35.39 4.20
1470 2387 3.451894 GCCATCGCCAAACCCCAG 61.452 66.667 0.00 0.00 0.00 4.45
1645 2686 3.660501 TGACAGTGCACGTAGATTTCT 57.339 42.857 12.01 0.00 0.00 2.52
1681 2722 6.599356 TGATGGTGCTTAGAAAGTACAGTA 57.401 37.500 9.56 0.00 44.66 2.74
1682 2723 5.483685 TGATGGTGCTTAGAAAGTACAGT 57.516 39.130 9.56 0.00 44.66 3.55
1683 2724 6.992063 AATGATGGTGCTTAGAAAGTACAG 57.008 37.500 9.56 0.00 44.66 2.74
1684 2725 7.168219 AGAAATGATGGTGCTTAGAAAGTACA 58.832 34.615 9.56 0.00 44.66 2.90
1685 2726 7.617041 AGAAATGATGGTGCTTAGAAAGTAC 57.383 36.000 0.00 0.00 42.51 2.73
1686 2727 8.103305 AGAAGAAATGATGGTGCTTAGAAAGTA 58.897 33.333 0.00 0.00 0.00 2.24
1687 2728 6.944862 AGAAGAAATGATGGTGCTTAGAAAGT 59.055 34.615 0.00 0.00 0.00 2.66
1688 2729 7.388460 AGAAGAAATGATGGTGCTTAGAAAG 57.612 36.000 0.00 0.00 0.00 2.62
1689 2730 7.765695 AAGAAGAAATGATGGTGCTTAGAAA 57.234 32.000 0.00 0.00 0.00 2.52
1691 2732 7.394016 TGTAAGAAGAAATGATGGTGCTTAGA 58.606 34.615 0.00 0.00 0.00 2.10
1884 2940 1.872773 ACACCCCCTTCTCTGATCTC 58.127 55.000 0.00 0.00 0.00 2.75
1978 3037 6.489700 TGAAGGTTGTTATCATGCTTCAGAAA 59.510 34.615 0.00 0.00 0.00 2.52
2098 3157 5.467063 GGTCTGAATTCAACTCGAACTTCTT 59.533 40.000 9.88 0.00 36.12 2.52
2156 3215 5.376625 TCTTAATATGTTCATCCCACCTGC 58.623 41.667 0.00 0.00 0.00 4.85
2208 3267 8.918961 TGTTCAACGTTTCACTGAAATAAATT 57.081 26.923 7.47 0.00 33.97 1.82
2296 3355 7.624549 TCCTTATTATAGCAGTCATCCAATCC 58.375 38.462 0.00 0.00 0.00 3.01
2374 3433 8.798859 ACAAGCTTGTCAATCAATTATCTACT 57.201 30.769 26.36 0.00 36.50 2.57
2401 3460 0.323451 AGCTTCCGTTGGAAATCCCC 60.323 55.000 0.00 0.00 41.54 4.81
2614 3679 7.651304 ACATTTCTTGCATTATTTGTCGAACAA 59.349 29.630 0.00 0.00 36.11 2.83
2619 3684 7.221970 CACAACATTTCTTGCATTATTTGTCG 58.778 34.615 0.00 0.00 0.00 4.35
2649 3714 2.841442 AGTTATGCCCTAGAATCGGC 57.159 50.000 1.07 1.07 45.92 5.54
2652 3717 7.837187 AGGACTATCTAGTTATGCCCTAGAATC 59.163 40.741 1.65 1.41 42.97 2.52
2659 3724 7.835181 AGTACATAGGACTATCTAGTTATGCCC 59.165 40.741 0.00 0.00 36.50 5.36
2727 3792 6.583806 AGATGAAACGAAAGATCATGTTTTGC 59.416 34.615 0.00 0.00 39.78 3.68
2780 3845 7.207383 TCTCAGAAACGAAAACTGTCTGATTA 58.793 34.615 2.40 0.00 42.73 1.75
2794 3859 1.412710 ACTGCAGGTTCTCAGAAACGA 59.587 47.619 19.93 0.00 34.57 3.85
2801 3867 3.405831 CATTTGAGACTGCAGGTTCTCA 58.594 45.455 25.39 25.39 37.44 3.27
2872 3938 5.178438 CAGACTGCTCTACTTGAAAAAGACC 59.822 44.000 0.00 0.00 0.00 3.85
2878 3944 3.321968 TGCTCAGACTGCTCTACTTGAAA 59.678 43.478 0.00 0.00 0.00 2.69
2891 3957 0.037139 CTTGCTGCTCTGCTCAGACT 60.037 55.000 0.00 0.00 33.54 3.24
2892 3958 1.020333 CCTTGCTGCTCTGCTCAGAC 61.020 60.000 0.00 0.00 33.54 3.51
2893 3959 1.295746 CCTTGCTGCTCTGCTCAGA 59.704 57.895 0.00 0.00 33.54 3.27
2894 3960 2.400158 GCCTTGCTGCTCTGCTCAG 61.400 63.158 0.00 0.00 34.79 3.35
2895 3961 2.359602 GCCTTGCTGCTCTGCTCA 60.360 61.111 0.00 0.00 0.00 4.26
2896 3962 1.674980 AAGCCTTGCTGCTCTGCTC 60.675 57.895 0.00 0.00 41.80 4.26
2897 3963 1.972223 CAAGCCTTGCTGCTCTGCT 60.972 57.895 0.00 2.82 41.80 4.24
2898 3964 2.567049 CAAGCCTTGCTGCTCTGC 59.433 61.111 0.00 0.25 41.80 4.26
2899 3965 1.303074 TCCAAGCCTTGCTGCTCTG 60.303 57.895 0.00 0.00 41.80 3.35
3177 4276 5.192927 CCCTGTGCTCACCAATTTATCTTA 58.807 41.667 0.00 0.00 0.00 2.10
3193 4292 2.027192 TCCATCTTCTTGTACCCTGTGC 60.027 50.000 0.00 0.00 0.00 4.57
3218 4317 0.107945 GCCTCTGGGTCATGTGACTC 60.108 60.000 12.43 9.43 45.58 3.36
3243 4342 0.536724 GGGTTTGCCTATTGCTTGGG 59.463 55.000 0.00 0.00 42.00 4.12
3247 4346 2.846827 AGTCTAGGGTTTGCCTATTGCT 59.153 45.455 0.00 0.00 42.00 3.91
3285 4384 8.781951 TCCTCTCCCATAAGTCAGAAAATTAAT 58.218 33.333 0.00 0.00 0.00 1.40
3340 4439 2.752354 CAGGATGGATCTAGCTCTACCG 59.248 54.545 0.00 0.00 0.00 4.02
3348 4447 1.969208 TGAGCTGCAGGATGGATCTAG 59.031 52.381 17.12 0.00 31.42 2.43
3415 4514 5.677178 CGCTGTTTTGTAGTTTTTCTCTGTC 59.323 40.000 0.00 0.00 0.00 3.51
3526 4625 7.875041 TCTCTCCTCTTATTTTCTCAAGTGTTG 59.125 37.037 0.00 0.00 0.00 3.33
3569 4671 2.490115 TGTCACATTTTAATGTCCGCCC 59.510 45.455 5.16 0.00 46.10 6.13
3570 4672 3.498082 GTGTCACATTTTAATGTCCGCC 58.502 45.455 5.16 0.00 46.10 6.13
3571 4673 3.057876 TGGTGTCACATTTTAATGTCCGC 60.058 43.478 5.12 6.11 46.10 5.54
3572 4674 4.023622 TGTGGTGTCACATTTTAATGTCCG 60.024 41.667 5.12 0.00 46.10 4.79
3573 4675 5.446143 TGTGGTGTCACATTTTAATGTCC 57.554 39.130 5.12 4.96 46.10 4.02
3585 4687 3.518634 AAATGGTTTGTGTGGTGTCAC 57.481 42.857 0.00 0.00 43.87 3.67
3586 4688 4.707448 AGTTAAATGGTTTGTGTGGTGTCA 59.293 37.500 0.00 0.00 0.00 3.58
3587 4689 5.257082 AGTTAAATGGTTTGTGTGGTGTC 57.743 39.130 0.00 0.00 0.00 3.67
3588 4690 5.415221 CAAGTTAAATGGTTTGTGTGGTGT 58.585 37.500 0.00 0.00 0.00 4.16
3589 4691 4.808364 CCAAGTTAAATGGTTTGTGTGGTG 59.192 41.667 1.21 0.00 33.08 4.17
3590 4692 5.017294 CCAAGTTAAATGGTTTGTGTGGT 57.983 39.130 1.21 0.00 33.08 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.