Multiple sequence alignment - TraesCS5D01G092000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G092000 chr5D 100.000 3140 0 0 808 3947 100035812 100032673 0.000000e+00 5799
1 TraesCS5D01G092000 chr5D 100.000 453 0 0 1 453 100036619 100036167 0.000000e+00 837
2 TraesCS5D01G092000 chr5D 91.416 233 20 0 1 233 62481030 62480798 1.770000e-83 320
3 TraesCS5D01G092000 chr5A 96.956 3154 77 10 808 3947 100620759 100617611 0.000000e+00 5275
4 TraesCS5D01G092000 chr5B 95.949 3160 73 20 814 3947 108797477 108794347 0.000000e+00 5075
5 TraesCS5D01G092000 chr5B 92.982 228 16 0 1 228 487225093 487225320 2.270000e-87 333
6 TraesCS5D01G092000 chr3A 93.220 236 14 2 1 235 362197113 362197347 2.920000e-91 346
7 TraesCS5D01G092000 chr3D 92.373 236 17 1 1 235 277244386 277244151 6.320000e-88 335
8 TraesCS5D01G092000 chr2D 91.983 237 15 4 1 235 630305666 630305432 2.940000e-86 329
9 TraesCS5D01G092000 chr3B 91.102 236 19 2 2 235 372854657 372854892 6.360000e-83 318
10 TraesCS5D01G092000 chr2B 91.228 228 20 0 1 228 671107815 671107588 1.070000e-80 311
11 TraesCS5D01G092000 chr2B 89.496 238 20 4 1 235 542686740 542686975 2.980000e-76 296
12 TraesCS5D01G092000 chr6D 90.171 234 19 2 6 235 317408250 317408483 6.410000e-78 302
13 TraesCS5D01G092000 chr7A 83.333 114 19 0 982 1095 127607344 127607457 5.390000e-19 106
14 TraesCS5D01G092000 chr4B 83.051 118 19 1 982 1098 186609237 186609120 5.390000e-19 106
15 TraesCS5D01G092000 chr7B 86.170 94 12 1 982 1075 87174293 87174201 2.510000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G092000 chr5D 100032673 100036619 3946 True 3318 5799 100.000 1 3947 2 chr5D.!!$R2 3946
1 TraesCS5D01G092000 chr5A 100617611 100620759 3148 True 5275 5275 96.956 808 3947 1 chr5A.!!$R1 3139
2 TraesCS5D01G092000 chr5B 108794347 108797477 3130 True 5075 5075 95.949 814 3947 1 chr5B.!!$R1 3133

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 429 0.033991 CTCCCTCCCGTCTTCTCTCA 60.034 60.0 0.0 0.0 0.00 3.27 F
429 430 0.033991 TCCCTCCCGTCTTCTCTCAG 60.034 60.0 0.0 0.0 0.00 3.35 F
441 442 0.034960 TCTCTCAGTCTCCTCCGGTG 60.035 60.0 0.0 0.0 0.00 4.94 F
1443 1447 0.037232 CCAGGGAGGACAAACTCGTC 60.037 60.0 0.0 0.0 41.22 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1626 1630 2.596338 TCCCGTGCAGAGACGTCA 60.596 61.111 19.50 0.0 37.66 4.35 R
2238 2242 4.388465 CCAGGCTGAGGGAGATCA 57.612 61.111 17.94 0.0 0.00 2.92 R
2507 2511 0.632835 ATGGATGAATGTGTGGGGCT 59.367 50.000 0.00 0.0 0.00 5.19 R
3220 3225 0.541392 ATCAGGCGGCAACATGACTA 59.459 50.000 13.08 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.900635 ATCAGTGAGAAAACAAAGCGTT 57.099 36.364 0.00 0.00 40.50 4.84
31 32 2.865551 AAACAAAGCGTTTTGCATCTGG 59.134 40.909 22.59 0.00 45.79 3.86
32 33 3.678529 AAACAAAGCGTTTTGCATCTGGT 60.679 39.130 22.59 0.60 45.79 4.00
33 34 5.155479 AAACAAAGCGTTTTGCATCTGGTT 61.155 37.500 22.59 6.65 45.79 3.67
34 35 6.917916 AAACAAAGCGTTTTGCATCTGGTTC 61.918 40.000 22.59 0.00 45.79 3.62
35 36 8.998396 AAACAAAGCGTTTTGCATCTGGTTCT 62.998 38.462 22.59 0.00 45.79 3.01
36 37 2.422276 GCGTTTTGCATCTGGTTCTT 57.578 45.000 0.00 0.00 45.45 2.52
37 38 2.742774 GCGTTTTGCATCTGGTTCTTT 58.257 42.857 0.00 0.00 45.45 2.52
38 39 3.896122 GCGTTTTGCATCTGGTTCTTTA 58.104 40.909 0.00 0.00 45.45 1.85
39 40 3.668656 GCGTTTTGCATCTGGTTCTTTAC 59.331 43.478 0.00 0.00 45.45 2.01
40 41 4.791411 GCGTTTTGCATCTGGTTCTTTACA 60.791 41.667 0.00 0.00 45.45 2.41
41 42 4.675114 CGTTTTGCATCTGGTTCTTTACAC 59.325 41.667 0.00 0.00 0.00 2.90
42 43 5.505654 CGTTTTGCATCTGGTTCTTTACACT 60.506 40.000 0.00 0.00 0.00 3.55
43 44 5.437289 TTTGCATCTGGTTCTTTACACTG 57.563 39.130 0.00 0.00 0.00 3.66
44 45 2.813754 TGCATCTGGTTCTTTACACTGC 59.186 45.455 0.00 0.00 0.00 4.40
45 46 2.813754 GCATCTGGTTCTTTACACTGCA 59.186 45.455 0.00 0.00 0.00 4.41
46 47 3.441572 GCATCTGGTTCTTTACACTGCAT 59.558 43.478 0.00 0.00 0.00 3.96
47 48 4.437930 GCATCTGGTTCTTTACACTGCATC 60.438 45.833 0.00 0.00 0.00 3.91
48 49 4.350368 TCTGGTTCTTTACACTGCATCA 57.650 40.909 0.00 0.00 0.00 3.07
49 50 4.910195 TCTGGTTCTTTACACTGCATCAT 58.090 39.130 0.00 0.00 0.00 2.45
50 51 6.048732 TCTGGTTCTTTACACTGCATCATA 57.951 37.500 0.00 0.00 0.00 2.15
51 52 6.472016 TCTGGTTCTTTACACTGCATCATAA 58.528 36.000 0.00 0.00 0.00 1.90
52 53 6.371548 TCTGGTTCTTTACACTGCATCATAAC 59.628 38.462 0.00 0.00 0.00 1.89
53 54 6.237901 TGGTTCTTTACACTGCATCATAACT 58.762 36.000 0.00 0.00 0.00 2.24
54 55 6.714810 TGGTTCTTTACACTGCATCATAACTT 59.285 34.615 0.00 0.00 0.00 2.66
55 56 7.230510 TGGTTCTTTACACTGCATCATAACTTT 59.769 33.333 0.00 0.00 0.00 2.66
56 57 7.750903 GGTTCTTTACACTGCATCATAACTTTC 59.249 37.037 0.00 0.00 0.00 2.62
57 58 7.977789 TCTTTACACTGCATCATAACTTTCA 57.022 32.000 0.00 0.00 0.00 2.69
58 59 8.565896 TCTTTACACTGCATCATAACTTTCAT 57.434 30.769 0.00 0.00 0.00 2.57
59 60 8.668353 TCTTTACACTGCATCATAACTTTCATC 58.332 33.333 0.00 0.00 0.00 2.92
60 61 7.920160 TTACACTGCATCATAACTTTCATCA 57.080 32.000 0.00 0.00 0.00 3.07
61 62 6.432607 ACACTGCATCATAACTTTCATCAG 57.567 37.500 0.00 0.00 0.00 2.90
62 63 6.175471 ACACTGCATCATAACTTTCATCAGA 58.825 36.000 0.00 0.00 0.00 3.27
63 64 6.827251 ACACTGCATCATAACTTTCATCAGAT 59.173 34.615 0.00 0.00 0.00 2.90
64 65 7.012138 ACACTGCATCATAACTTTCATCAGATC 59.988 37.037 0.00 0.00 0.00 2.75
65 66 7.012044 CACTGCATCATAACTTTCATCAGATCA 59.988 37.037 0.00 0.00 0.00 2.92
66 67 7.720074 ACTGCATCATAACTTTCATCAGATCAT 59.280 33.333 0.00 0.00 0.00 2.45
67 68 8.095937 TGCATCATAACTTTCATCAGATCATC 57.904 34.615 0.00 0.00 0.00 2.92
68 69 7.717875 TGCATCATAACTTTCATCAGATCATCA 59.282 33.333 0.00 0.00 0.00 3.07
69 70 8.731605 GCATCATAACTTTCATCAGATCATCAT 58.268 33.333 0.00 0.00 0.00 2.45
71 72 8.843885 TCATAACTTTCATCAGATCATCATCC 57.156 34.615 0.00 0.00 0.00 3.51
72 73 8.657712 TCATAACTTTCATCAGATCATCATCCT 58.342 33.333 0.00 0.00 0.00 3.24
73 74 8.937884 CATAACTTTCATCAGATCATCATCCTC 58.062 37.037 0.00 0.00 0.00 3.71
74 75 6.750660 ACTTTCATCAGATCATCATCCTCT 57.249 37.500 0.00 0.00 0.00 3.69
75 76 7.852550 ACTTTCATCAGATCATCATCCTCTA 57.147 36.000 0.00 0.00 0.00 2.43
76 77 8.260099 ACTTTCATCAGATCATCATCCTCTAA 57.740 34.615 0.00 0.00 0.00 2.10
77 78 8.882282 ACTTTCATCAGATCATCATCCTCTAAT 58.118 33.333 0.00 0.00 0.00 1.73
78 79 9.157104 CTTTCATCAGATCATCATCCTCTAATG 57.843 37.037 0.00 0.00 0.00 1.90
79 80 6.641474 TCATCAGATCATCATCCTCTAATGC 58.359 40.000 0.00 0.00 0.00 3.56
80 81 5.417754 TCAGATCATCATCCTCTAATGCC 57.582 43.478 0.00 0.00 0.00 4.40
81 82 4.224594 TCAGATCATCATCCTCTAATGCCC 59.775 45.833 0.00 0.00 0.00 5.36
82 83 4.019591 CAGATCATCATCCTCTAATGCCCA 60.020 45.833 0.00 0.00 0.00 5.36
83 84 4.600547 AGATCATCATCCTCTAATGCCCAA 59.399 41.667 0.00 0.00 0.00 4.12
84 85 4.794311 TCATCATCCTCTAATGCCCAAA 57.206 40.909 0.00 0.00 0.00 3.28
85 86 5.329191 TCATCATCCTCTAATGCCCAAAT 57.671 39.130 0.00 0.00 0.00 2.32
86 87 5.074804 TCATCATCCTCTAATGCCCAAATG 58.925 41.667 0.00 0.00 0.00 2.32
87 88 3.225104 TCATCCTCTAATGCCCAAATGC 58.775 45.455 0.00 0.00 0.00 3.56
88 89 2.824689 TCCTCTAATGCCCAAATGCA 57.175 45.000 0.00 0.00 46.94 3.96
89 90 2.658285 TCCTCTAATGCCCAAATGCAG 58.342 47.619 0.00 0.00 45.93 4.41
90 91 1.068127 CCTCTAATGCCCAAATGCAGC 59.932 52.381 0.00 0.00 45.93 5.25
91 92 0.740149 TCTAATGCCCAAATGCAGCG 59.260 50.000 0.00 0.00 45.93 5.18
92 93 0.457035 CTAATGCCCAAATGCAGCGT 59.543 50.000 0.00 0.00 45.93 5.07
93 94 0.173029 TAATGCCCAAATGCAGCGTG 59.827 50.000 0.00 0.00 45.93 5.34
94 95 3.652539 ATGCCCAAATGCAGCGTGC 62.653 57.895 0.00 3.44 45.93 5.34
96 97 3.682885 CCCAAATGCAGCGTGCCA 61.683 61.111 7.38 0.00 44.23 4.92
97 98 2.574929 CCAAATGCAGCGTGCCAT 59.425 55.556 7.38 0.29 44.23 4.40
98 99 1.807981 CCAAATGCAGCGTGCCATG 60.808 57.895 7.38 0.00 44.23 3.66
99 100 1.080366 CAAATGCAGCGTGCCATGT 60.080 52.632 7.38 0.00 44.23 3.21
100 101 0.668096 CAAATGCAGCGTGCCATGTT 60.668 50.000 7.38 0.00 44.23 2.71
101 102 0.668096 AAATGCAGCGTGCCATGTTG 60.668 50.000 7.38 0.00 44.23 3.33
102 103 3.636313 ATGCAGCGTGCCATGTTGC 62.636 57.895 17.61 17.61 44.23 4.17
103 104 4.345962 GCAGCGTGCCATGTTGCA 62.346 61.111 19.22 0.00 40.44 4.08
109 110 4.848000 TGCCATGTTGCACTCCAT 57.152 50.000 0.00 0.00 36.04 3.41
110 111 2.570365 TGCCATGTTGCACTCCATC 58.430 52.632 0.00 0.00 36.04 3.51
111 112 0.251253 TGCCATGTTGCACTCCATCA 60.251 50.000 0.00 0.00 36.04 3.07
112 113 0.889994 GCCATGTTGCACTCCATCAA 59.110 50.000 0.00 0.00 0.00 2.57
113 114 1.273048 GCCATGTTGCACTCCATCAAA 59.727 47.619 0.00 0.00 0.00 2.69
114 115 2.673043 GCCATGTTGCACTCCATCAAAG 60.673 50.000 0.00 0.00 0.00 2.77
115 116 2.821378 CCATGTTGCACTCCATCAAAGA 59.179 45.455 0.00 0.00 0.00 2.52
116 117 3.256383 CCATGTTGCACTCCATCAAAGAA 59.744 43.478 0.00 0.00 0.00 2.52
117 118 4.081862 CCATGTTGCACTCCATCAAAGAAT 60.082 41.667 0.00 0.00 0.00 2.40
118 119 4.508461 TGTTGCACTCCATCAAAGAATG 57.492 40.909 0.00 0.00 0.00 2.67
119 120 3.248266 GTTGCACTCCATCAAAGAATGC 58.752 45.455 0.00 0.00 0.00 3.56
120 121 1.820519 TGCACTCCATCAAAGAATGCC 59.179 47.619 0.00 0.00 0.00 4.40
121 122 1.202222 GCACTCCATCAAAGAATGCCG 60.202 52.381 0.00 0.00 0.00 5.69
122 123 1.098050 ACTCCATCAAAGAATGCCGC 58.902 50.000 0.00 0.00 0.00 6.53
123 124 0.383231 CTCCATCAAAGAATGCCGCC 59.617 55.000 0.00 0.00 0.00 6.13
124 125 0.323269 TCCATCAAAGAATGCCGCCA 60.323 50.000 0.00 0.00 0.00 5.69
125 126 0.101759 CCATCAAAGAATGCCGCCAG 59.898 55.000 0.00 0.00 0.00 4.85
126 127 1.097232 CATCAAAGAATGCCGCCAGA 58.903 50.000 0.00 0.00 0.00 3.86
127 128 1.473677 CATCAAAGAATGCCGCCAGAA 59.526 47.619 0.00 0.00 0.00 3.02
128 129 1.614996 TCAAAGAATGCCGCCAGAAA 58.385 45.000 0.00 0.00 0.00 2.52
129 130 2.170166 TCAAAGAATGCCGCCAGAAAT 58.830 42.857 0.00 0.00 0.00 2.17
130 131 2.562298 TCAAAGAATGCCGCCAGAAATT 59.438 40.909 0.00 0.00 0.00 1.82
131 132 3.006752 TCAAAGAATGCCGCCAGAAATTT 59.993 39.130 0.00 0.00 0.00 1.82
132 133 3.683365 AAGAATGCCGCCAGAAATTTT 57.317 38.095 0.00 0.00 0.00 1.82
133 134 3.236632 AGAATGCCGCCAGAAATTTTC 57.763 42.857 0.66 0.66 0.00 2.29
134 135 2.562298 AGAATGCCGCCAGAAATTTTCA 59.438 40.909 11.53 0.00 0.00 2.69
135 136 2.660189 ATGCCGCCAGAAATTTTCAG 57.340 45.000 11.53 3.42 0.00 3.02
136 137 1.614996 TGCCGCCAGAAATTTTCAGA 58.385 45.000 11.53 0.00 0.00 3.27
137 138 1.541147 TGCCGCCAGAAATTTTCAGAG 59.459 47.619 11.53 4.38 0.00 3.35
138 139 1.733718 GCCGCCAGAAATTTTCAGAGC 60.734 52.381 11.53 9.27 0.00 4.09
139 140 1.135286 CCGCCAGAAATTTTCAGAGCC 60.135 52.381 11.53 0.00 0.00 4.70
140 141 1.541147 CGCCAGAAATTTTCAGAGCCA 59.459 47.619 11.53 0.00 0.00 4.75
141 142 2.669391 CGCCAGAAATTTTCAGAGCCAC 60.669 50.000 11.53 0.00 0.00 5.01
142 143 2.297033 GCCAGAAATTTTCAGAGCCACA 59.703 45.455 11.53 0.00 0.00 4.17
143 144 3.243839 GCCAGAAATTTTCAGAGCCACAA 60.244 43.478 11.53 0.00 0.00 3.33
144 145 4.740334 GCCAGAAATTTTCAGAGCCACAAA 60.740 41.667 11.53 0.00 0.00 2.83
145 146 4.986659 CCAGAAATTTTCAGAGCCACAAAG 59.013 41.667 11.53 0.00 0.00 2.77
146 147 5.452356 CCAGAAATTTTCAGAGCCACAAAGT 60.452 40.000 11.53 0.00 0.00 2.66
147 148 5.689068 CAGAAATTTTCAGAGCCACAAAGTC 59.311 40.000 11.53 0.00 0.00 3.01
148 149 4.590850 AATTTTCAGAGCCACAAAGTCC 57.409 40.909 0.00 0.00 0.00 3.85
149 150 2.727123 TTTCAGAGCCACAAAGTCCA 57.273 45.000 0.00 0.00 0.00 4.02
150 151 1.967319 TTCAGAGCCACAAAGTCCAC 58.033 50.000 0.00 0.00 0.00 4.02
151 152 0.836606 TCAGAGCCACAAAGTCCACA 59.163 50.000 0.00 0.00 0.00 4.17
152 153 0.947244 CAGAGCCACAAAGTCCACAC 59.053 55.000 0.00 0.00 0.00 3.82
153 154 0.839946 AGAGCCACAAAGTCCACACT 59.160 50.000 0.00 0.00 0.00 3.55
154 155 1.202698 AGAGCCACAAAGTCCACACTC 60.203 52.381 0.00 0.00 29.93 3.51
155 156 0.839946 AGCCACAAAGTCCACACTCT 59.160 50.000 0.00 0.00 29.93 3.24
156 157 0.947244 GCCACAAAGTCCACACTCTG 59.053 55.000 0.00 0.00 29.93 3.35
157 158 1.475034 GCCACAAAGTCCACACTCTGA 60.475 52.381 0.00 0.00 29.93 3.27
158 159 2.811873 GCCACAAAGTCCACACTCTGAT 60.812 50.000 0.00 0.00 29.93 2.90
159 160 3.480470 CCACAAAGTCCACACTCTGATT 58.520 45.455 0.00 0.00 29.93 2.57
160 161 3.251729 CCACAAAGTCCACACTCTGATTG 59.748 47.826 0.00 0.00 29.93 2.67
161 162 3.879295 CACAAAGTCCACACTCTGATTGT 59.121 43.478 0.00 0.00 32.38 2.71
162 163 5.056480 CACAAAGTCCACACTCTGATTGTA 58.944 41.667 0.00 0.00 31.05 2.41
163 164 5.050091 CACAAAGTCCACACTCTGATTGTAC 60.050 44.000 0.00 0.00 31.05 2.90
164 165 5.163301 ACAAAGTCCACACTCTGATTGTACT 60.163 40.000 0.00 0.00 31.05 2.73
165 166 4.527509 AGTCCACACTCTGATTGTACTG 57.472 45.455 0.00 0.00 0.00 2.74
166 167 2.996621 GTCCACACTCTGATTGTACTGC 59.003 50.000 0.00 0.00 0.00 4.40
167 168 2.028112 TCCACACTCTGATTGTACTGCC 60.028 50.000 0.00 0.00 0.00 4.85
168 169 2.289631 CCACACTCTGATTGTACTGCCA 60.290 50.000 0.00 0.00 0.00 4.92
169 170 3.603532 CACACTCTGATTGTACTGCCAT 58.396 45.455 0.00 0.00 0.00 4.40
170 171 3.620374 CACACTCTGATTGTACTGCCATC 59.380 47.826 0.00 0.00 0.00 3.51
171 172 3.517100 ACACTCTGATTGTACTGCCATCT 59.483 43.478 0.00 0.00 0.00 2.90
172 173 4.019860 ACACTCTGATTGTACTGCCATCTT 60.020 41.667 0.00 0.00 0.00 2.40
173 174 4.569966 CACTCTGATTGTACTGCCATCTTC 59.430 45.833 0.00 0.00 0.00 2.87
174 175 4.125703 CTCTGATTGTACTGCCATCTTCC 58.874 47.826 0.00 0.00 0.00 3.46
175 176 2.868583 CTGATTGTACTGCCATCTTCCG 59.131 50.000 0.00 0.00 0.00 4.30
176 177 2.213499 GATTGTACTGCCATCTTCCGG 58.787 52.381 0.00 0.00 0.00 5.14
177 178 0.981183 TTGTACTGCCATCTTCCGGT 59.019 50.000 0.00 0.00 0.00 5.28
178 179 0.249120 TGTACTGCCATCTTCCGGTG 59.751 55.000 0.00 0.00 0.00 4.94
179 180 0.249398 GTACTGCCATCTTCCGGTGT 59.751 55.000 0.00 0.00 0.00 4.16
180 181 0.981183 TACTGCCATCTTCCGGTGTT 59.019 50.000 0.00 0.00 0.00 3.32
181 182 0.110486 ACTGCCATCTTCCGGTGTTT 59.890 50.000 0.00 0.00 0.00 2.83
182 183 0.523072 CTGCCATCTTCCGGTGTTTG 59.477 55.000 0.00 0.00 0.00 2.93
183 184 0.109532 TGCCATCTTCCGGTGTTTGA 59.890 50.000 0.00 0.00 0.00 2.69
184 185 0.804989 GCCATCTTCCGGTGTTTGAG 59.195 55.000 0.00 0.00 0.00 3.02
185 186 0.804989 CCATCTTCCGGTGTTTGAGC 59.195 55.000 0.00 0.00 0.00 4.26
186 187 1.522668 CATCTTCCGGTGTTTGAGCA 58.477 50.000 0.00 0.00 0.00 4.26
187 188 1.879380 CATCTTCCGGTGTTTGAGCAA 59.121 47.619 0.00 0.00 0.00 3.91
188 189 1.593196 TCTTCCGGTGTTTGAGCAAG 58.407 50.000 0.00 0.00 0.00 4.01
189 190 1.134220 TCTTCCGGTGTTTGAGCAAGT 60.134 47.619 0.00 0.00 0.00 3.16
190 191 1.264288 CTTCCGGTGTTTGAGCAAGTC 59.736 52.381 0.00 0.00 0.00 3.01
191 192 0.468226 TCCGGTGTTTGAGCAAGTCT 59.532 50.000 0.00 0.00 0.00 3.24
192 193 0.868406 CCGGTGTTTGAGCAAGTCTC 59.132 55.000 0.00 0.00 42.23 3.36
201 202 1.597742 GAGCAAGTCTCAAGTTGGCA 58.402 50.000 2.34 0.00 41.51 4.92
202 203 1.949525 GAGCAAGTCTCAAGTTGGCAA 59.050 47.619 2.34 0.00 41.51 4.52
203 204 1.952296 AGCAAGTCTCAAGTTGGCAAG 59.048 47.619 0.00 0.00 36.49 4.01
204 205 1.000938 GCAAGTCTCAAGTTGGCAAGG 60.001 52.381 0.00 0.00 36.49 3.61
205 206 2.575532 CAAGTCTCAAGTTGGCAAGGA 58.424 47.619 0.00 0.00 33.00 3.36
206 207 2.262423 AGTCTCAAGTTGGCAAGGAC 57.738 50.000 0.00 4.80 0.00 3.85
207 208 1.771255 AGTCTCAAGTTGGCAAGGACT 59.229 47.619 0.00 7.00 0.00 3.85
208 209 1.876156 GTCTCAAGTTGGCAAGGACTG 59.124 52.381 0.00 0.00 0.00 3.51
209 210 1.490490 TCTCAAGTTGGCAAGGACTGT 59.510 47.619 0.00 0.00 0.00 3.55
210 211 2.092429 TCTCAAGTTGGCAAGGACTGTT 60.092 45.455 0.00 0.00 0.00 3.16
211 212 2.023673 TCAAGTTGGCAAGGACTGTTG 58.976 47.619 0.00 0.00 0.00 3.33
216 217 3.966215 GCAAGGACTGTTGCGCTA 58.034 55.556 9.73 0.00 43.24 4.26
217 218 1.790387 GCAAGGACTGTTGCGCTAG 59.210 57.895 9.73 7.17 43.24 3.42
218 219 1.790387 CAAGGACTGTTGCGCTAGC 59.210 57.895 9.73 4.06 45.41 3.42
219 220 1.376037 AAGGACTGTTGCGCTAGCC 60.376 57.895 9.73 9.97 44.33 3.93
220 221 1.831652 AAGGACTGTTGCGCTAGCCT 61.832 55.000 9.73 11.90 44.33 4.58
221 222 1.811679 GGACTGTTGCGCTAGCCTC 60.812 63.158 9.73 1.59 44.33 4.70
222 223 1.811679 GACTGTTGCGCTAGCCTCC 60.812 63.158 9.73 0.00 44.33 4.30
223 224 2.265739 CTGTTGCGCTAGCCTCCA 59.734 61.111 9.73 0.89 44.33 3.86
224 225 1.153289 CTGTTGCGCTAGCCTCCAT 60.153 57.895 9.73 0.00 44.33 3.41
225 226 0.104855 CTGTTGCGCTAGCCTCCATA 59.895 55.000 9.73 0.00 44.33 2.74
226 227 0.104855 TGTTGCGCTAGCCTCCATAG 59.895 55.000 9.73 0.00 44.33 2.23
227 228 0.389391 GTTGCGCTAGCCTCCATAGA 59.611 55.000 9.73 0.00 44.33 1.98
228 229 1.001406 GTTGCGCTAGCCTCCATAGAT 59.999 52.381 9.73 0.00 44.33 1.98
229 230 1.342074 TGCGCTAGCCTCCATAGATT 58.658 50.000 9.73 0.00 44.33 2.40
230 231 1.694150 TGCGCTAGCCTCCATAGATTT 59.306 47.619 9.73 0.00 44.33 2.17
231 232 2.104792 TGCGCTAGCCTCCATAGATTTT 59.895 45.455 9.73 0.00 44.33 1.82
232 233 3.142174 GCGCTAGCCTCCATAGATTTTT 58.858 45.455 9.66 0.00 37.42 1.94
267 268 9.794719 AAGTAAATGAGGAGTAATATTTAGCCC 57.205 33.333 0.00 0.00 0.00 5.19
268 269 9.172060 AGTAAATGAGGAGTAATATTTAGCCCT 57.828 33.333 0.00 0.00 0.00 5.19
269 270 9.438228 GTAAATGAGGAGTAATATTTAGCCCTC 57.562 37.037 14.10 14.10 39.20 4.30
270 271 7.880265 AATGAGGAGTAATATTTAGCCCTCT 57.120 36.000 18.37 8.37 39.41 3.69
271 272 7.880265 ATGAGGAGTAATATTTAGCCCTCTT 57.120 36.000 18.37 13.14 39.41 2.85
272 273 7.067496 TGAGGAGTAATATTTAGCCCTCTTG 57.933 40.000 18.37 0.00 39.41 3.02
273 274 6.844388 TGAGGAGTAATATTTAGCCCTCTTGA 59.156 38.462 18.37 4.93 39.41 3.02
274 275 7.068686 AGGAGTAATATTTAGCCCTCTTGAC 57.931 40.000 0.00 0.00 0.00 3.18
275 276 6.043358 AGGAGTAATATTTAGCCCTCTTGACC 59.957 42.308 0.00 0.00 0.00 4.02
276 277 6.189036 AGTAATATTTAGCCCTCTTGACCC 57.811 41.667 0.00 0.00 0.00 4.46
277 278 3.771577 ATATTTAGCCCTCTTGACCCG 57.228 47.619 0.00 0.00 0.00 5.28
278 279 0.546598 ATTTAGCCCTCTTGACCCGG 59.453 55.000 0.00 0.00 0.00 5.73
279 280 0.545787 TTTAGCCCTCTTGACCCGGA 60.546 55.000 0.73 0.00 0.00 5.14
280 281 1.262640 TTAGCCCTCTTGACCCGGAC 61.263 60.000 0.73 0.00 0.00 4.79
281 282 4.097361 GCCCTCTTGACCCGGACC 62.097 72.222 0.73 0.00 0.00 4.46
282 283 3.771160 CCCTCTTGACCCGGACCG 61.771 72.222 6.99 6.99 0.00 4.79
299 300 3.793888 GGAATCCGGGCCGAACCT 61.794 66.667 30.79 8.67 39.10 3.50
300 301 2.437396 GGAATCCGGGCCGAACCTA 61.437 63.158 30.79 7.46 39.10 3.08
301 302 1.523524 GAATCCGGGCCGAACCTAA 59.476 57.895 30.79 5.50 39.10 2.69
302 303 0.108019 GAATCCGGGCCGAACCTAAT 59.892 55.000 30.79 7.75 39.10 1.73
303 304 0.108019 AATCCGGGCCGAACCTAATC 59.892 55.000 30.79 0.00 39.10 1.75
304 305 1.052124 ATCCGGGCCGAACCTAATCA 61.052 55.000 30.79 0.00 39.10 2.57
305 306 1.227556 CCGGGCCGAACCTAATCAG 60.228 63.158 30.79 1.58 39.10 2.90
350 351 2.975799 GCCGCAGAAACACCGGAA 60.976 61.111 9.46 0.00 44.55 4.30
351 352 2.332654 GCCGCAGAAACACCGGAAT 61.333 57.895 9.46 0.00 44.55 3.01
352 353 1.022451 GCCGCAGAAACACCGGAATA 61.022 55.000 9.46 0.00 44.55 1.75
353 354 1.663695 CCGCAGAAACACCGGAATAT 58.336 50.000 9.46 0.00 44.55 1.28
354 355 2.014128 CCGCAGAAACACCGGAATATT 58.986 47.619 9.46 0.00 44.55 1.28
355 356 2.031683 CCGCAGAAACACCGGAATATTC 59.968 50.000 9.46 6.93 44.55 1.75
356 357 2.031683 CGCAGAAACACCGGAATATTCC 59.968 50.000 22.63 22.63 44.05 3.01
366 367 1.594331 GGAATATTCCGTCCACCAGC 58.406 55.000 18.61 0.00 37.65 4.85
367 368 1.217882 GAATATTCCGTCCACCAGCG 58.782 55.000 3.92 0.00 0.00 5.18
368 369 0.539986 AATATTCCGTCCACCAGCGT 59.460 50.000 0.00 0.00 0.00 5.07
369 370 0.179084 ATATTCCGTCCACCAGCGTG 60.179 55.000 0.00 0.00 39.91 5.34
370 371 1.537814 TATTCCGTCCACCAGCGTGT 61.538 55.000 0.00 0.00 38.41 4.49
371 372 2.781595 ATTCCGTCCACCAGCGTGTC 62.782 60.000 0.00 0.00 38.41 3.67
374 375 3.626924 GTCCACCAGCGTGTCCCT 61.627 66.667 0.00 0.00 38.41 4.20
375 376 3.311110 TCCACCAGCGTGTCCCTC 61.311 66.667 0.00 0.00 38.41 4.30
376 377 4.394712 CCACCAGCGTGTCCCTCC 62.395 72.222 0.00 0.00 38.41 4.30
377 378 3.314331 CACCAGCGTGTCCCTCCT 61.314 66.667 0.00 0.00 35.10 3.69
378 379 2.997897 ACCAGCGTGTCCCTCCTC 60.998 66.667 0.00 0.00 0.00 3.71
379 380 3.775654 CCAGCGTGTCCCTCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
380 381 3.775654 CAGCGTGTCCCTCCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
381 382 3.999285 AGCGTGTCCCTCCTCCCT 61.999 66.667 0.00 0.00 0.00 4.20
382 383 3.462678 GCGTGTCCCTCCTCCCTC 61.463 72.222 0.00 0.00 0.00 4.30
383 384 2.360980 CGTGTCCCTCCTCCCTCT 59.639 66.667 0.00 0.00 0.00 3.69
384 385 1.755008 CGTGTCCCTCCTCCCTCTC 60.755 68.421 0.00 0.00 0.00 3.20
385 386 1.382009 GTGTCCCTCCTCCCTCTCC 60.382 68.421 0.00 0.00 0.00 3.71
386 387 2.284151 GTCCCTCCTCCCTCTCCC 59.716 72.222 0.00 0.00 0.00 4.30
387 388 2.133201 TCCCTCCTCCCTCTCCCT 59.867 66.667 0.00 0.00 0.00 4.20
388 389 2.015726 TCCCTCCTCCCTCTCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
389 390 2.328589 CCCTCCTCCCTCTCCCTCA 61.329 68.421 0.00 0.00 0.00 3.86
390 391 1.673928 CCCTCCTCCCTCTCCCTCAT 61.674 65.000 0.00 0.00 0.00 2.90
391 392 0.178935 CCTCCTCCCTCTCCCTCATC 60.179 65.000 0.00 0.00 0.00 2.92
392 393 0.178935 CTCCTCCCTCTCCCTCATCC 60.179 65.000 0.00 0.00 0.00 3.51
393 394 1.152139 CCTCCCTCTCCCTCATCCC 60.152 68.421 0.00 0.00 0.00 3.85
394 395 1.152139 CTCCCTCTCCCTCATCCCC 60.152 68.421 0.00 0.00 0.00 4.81
395 396 1.630333 TCCCTCTCCCTCATCCCCT 60.630 63.158 0.00 0.00 0.00 4.79
396 397 1.152139 CCCTCTCCCTCATCCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
397 398 1.152139 CCTCTCCCTCATCCCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
398 399 1.152139 CTCTCCCTCATCCCCTCCC 60.152 68.421 0.00 0.00 0.00 4.30
399 400 2.122189 CTCCCTCATCCCCTCCCC 60.122 72.222 0.00 0.00 0.00 4.81
400 401 2.964039 TCCCTCATCCCCTCCCCA 60.964 66.667 0.00 0.00 0.00 4.96
401 402 2.295365 CCCTCATCCCCTCCCCAT 59.705 66.667 0.00 0.00 0.00 4.00
402 403 1.387926 CCCTCATCCCCTCCCCATT 60.388 63.158 0.00 0.00 0.00 3.16
403 404 1.430369 CCCTCATCCCCTCCCCATTC 61.430 65.000 0.00 0.00 0.00 2.67
404 405 1.430369 CCTCATCCCCTCCCCATTCC 61.430 65.000 0.00 0.00 0.00 3.01
405 406 1.387347 TCATCCCCTCCCCATTCCC 60.387 63.158 0.00 0.00 0.00 3.97
406 407 2.037238 ATCCCCTCCCCATTCCCC 60.037 66.667 0.00 0.00 0.00 4.81
407 408 2.683028 ATCCCCTCCCCATTCCCCT 61.683 63.158 0.00 0.00 0.00 4.79
408 409 2.661292 ATCCCCTCCCCATTCCCCTC 62.661 65.000 0.00 0.00 0.00 4.30
409 410 2.778717 CCCTCCCCATTCCCCTCC 60.779 72.222 0.00 0.00 0.00 4.30
410 411 2.378522 CCTCCCCATTCCCCTCCT 59.621 66.667 0.00 0.00 0.00 3.69
411 412 1.772156 CCTCCCCATTCCCCTCCTC 60.772 68.421 0.00 0.00 0.00 3.71
412 413 1.772156 CTCCCCATTCCCCTCCTCC 60.772 68.421 0.00 0.00 0.00 4.30
413 414 2.778717 CCCCATTCCCCTCCTCCC 60.779 72.222 0.00 0.00 0.00 4.30
414 415 2.378522 CCCATTCCCCTCCTCCCT 59.621 66.667 0.00 0.00 0.00 4.20
415 416 1.772156 CCCATTCCCCTCCTCCCTC 60.772 68.421 0.00 0.00 0.00 4.30
416 417 1.772156 CCATTCCCCTCCTCCCTCC 60.772 68.421 0.00 0.00 0.00 4.30
417 418 1.772156 CATTCCCCTCCTCCCTCCC 60.772 68.421 0.00 0.00 0.00 4.30
418 419 3.412350 ATTCCCCTCCTCCCTCCCG 62.412 68.421 0.00 0.00 0.00 5.14
420 421 4.862823 CCCCTCCTCCCTCCCGTC 62.863 77.778 0.00 0.00 0.00 4.79
421 422 3.756783 CCCTCCTCCCTCCCGTCT 61.757 72.222 0.00 0.00 0.00 4.18
422 423 2.364961 CCTCCTCCCTCCCGTCTT 59.635 66.667 0.00 0.00 0.00 3.01
423 424 1.758906 CCTCCTCCCTCCCGTCTTC 60.759 68.421 0.00 0.00 0.00 2.87
424 425 1.308326 CTCCTCCCTCCCGTCTTCT 59.692 63.158 0.00 0.00 0.00 2.85
425 426 0.753848 CTCCTCCCTCCCGTCTTCTC 60.754 65.000 0.00 0.00 0.00 2.87
426 427 1.215679 TCCTCCCTCCCGTCTTCTCT 61.216 60.000 0.00 0.00 0.00 3.10
427 428 0.753848 CCTCCCTCCCGTCTTCTCTC 60.754 65.000 0.00 0.00 0.00 3.20
428 429 0.033991 CTCCCTCCCGTCTTCTCTCA 60.034 60.000 0.00 0.00 0.00 3.27
429 430 0.033991 TCCCTCCCGTCTTCTCTCAG 60.034 60.000 0.00 0.00 0.00 3.35
430 431 0.323908 CCCTCCCGTCTTCTCTCAGT 60.324 60.000 0.00 0.00 0.00 3.41
431 432 1.099689 CCTCCCGTCTTCTCTCAGTC 58.900 60.000 0.00 0.00 0.00 3.51
432 433 1.340600 CCTCCCGTCTTCTCTCAGTCT 60.341 57.143 0.00 0.00 0.00 3.24
433 434 2.014128 CTCCCGTCTTCTCTCAGTCTC 58.986 57.143 0.00 0.00 0.00 3.36
434 435 1.099689 CCCGTCTTCTCTCAGTCTCC 58.900 60.000 0.00 0.00 0.00 3.71
435 436 1.340600 CCCGTCTTCTCTCAGTCTCCT 60.341 57.143 0.00 0.00 0.00 3.69
436 437 2.014128 CCGTCTTCTCTCAGTCTCCTC 58.986 57.143 0.00 0.00 0.00 3.71
437 438 2.014128 CGTCTTCTCTCAGTCTCCTCC 58.986 57.143 0.00 0.00 0.00 4.30
438 439 2.014128 GTCTTCTCTCAGTCTCCTCCG 58.986 57.143 0.00 0.00 0.00 4.63
439 440 1.065053 TCTTCTCTCAGTCTCCTCCGG 60.065 57.143 0.00 0.00 0.00 5.14
440 441 0.699399 TTCTCTCAGTCTCCTCCGGT 59.301 55.000 0.00 0.00 0.00 5.28
441 442 0.034960 TCTCTCAGTCTCCTCCGGTG 60.035 60.000 0.00 0.00 0.00 4.94
442 443 1.000771 TCTCAGTCTCCTCCGGTGG 60.001 63.158 16.75 16.75 0.00 4.61
443 444 2.680352 TCAGTCTCCTCCGGTGGC 60.680 66.667 18.03 4.11 0.00 5.01
444 445 3.775654 CAGTCTCCTCCGGTGGCC 61.776 72.222 18.03 7.99 0.00 5.36
445 446 4.316823 AGTCTCCTCCGGTGGCCA 62.317 66.667 18.03 0.00 0.00 5.36
446 447 3.319198 GTCTCCTCCGGTGGCCAA 61.319 66.667 18.03 2.59 0.00 4.52
447 448 2.285368 TCTCCTCCGGTGGCCAAT 60.285 61.111 18.03 0.00 0.00 3.16
448 449 2.190578 CTCCTCCGGTGGCCAATC 59.809 66.667 18.03 1.24 0.00 2.67
449 450 3.406595 CTCCTCCGGTGGCCAATCC 62.407 68.421 18.03 4.17 0.00 3.01
450 451 4.506255 CCTCCGGTGGCCAATCCC 62.506 72.222 7.24 3.23 0.00 3.85
451 452 4.506255 CTCCGGTGGCCAATCCCC 62.506 72.222 7.24 2.76 0.00 4.81
891 892 2.433838 CACCACGAGCAGGAGCAG 60.434 66.667 0.00 0.00 45.49 4.24
895 896 4.756458 ACGAGCAGGAGCAGCAGC 62.756 66.667 0.00 0.00 45.49 5.25
897 898 2.820479 GAGCAGGAGCAGCAGCAG 60.820 66.667 3.17 0.00 45.49 4.24
900 901 2.671963 CAGGAGCAGCAGCAGCAA 60.672 61.111 12.92 0.00 45.49 3.91
904 905 1.749638 GAGCAGCAGCAGCAATCCT 60.750 57.895 12.92 0.00 45.49 3.24
1113 1117 0.978146 ATCCCTCCTCCAACTCCACG 60.978 60.000 0.00 0.00 0.00 4.94
1368 1372 0.171455 ACAAGCTCGTCATCGACCTC 59.829 55.000 0.00 0.00 41.35 3.85
1443 1447 0.037232 CCAGGGAGGACAAACTCGTC 60.037 60.000 0.00 0.00 41.22 4.20
1626 1630 2.898738 CAGAGTGCGCTGGGAGAT 59.101 61.111 3.44 0.00 32.26 2.75
1755 1759 4.903010 GATAGCGGCGGCGGGAAA 62.903 66.667 33.02 0.00 46.35 3.13
2094 2098 6.937465 AGAAGGTGTCTTTCCTATTCTCAAAC 59.063 38.462 0.00 0.00 34.56 2.93
2238 2242 5.455326 GCCAGATGTAAGGATCACTGGTATT 60.455 44.000 0.00 0.00 44.34 1.89
2895 2899 2.881403 GCTCTTGCAAGGATGGAAAGGA 60.881 50.000 25.73 2.14 36.37 3.36
3147 3152 2.102578 GCTCATAGGGCCAATTTGTGT 58.897 47.619 6.18 0.00 0.00 3.72
3201 3206 9.241919 CCCAAGATATATGCATGGTTTTATGTA 57.758 33.333 10.16 0.00 0.00 2.29
3212 3217 9.579768 TGCATGGTTTTATGTATTGTGAATTAC 57.420 29.630 0.00 0.00 0.00 1.89
3213 3218 9.801873 GCATGGTTTTATGTATTGTGAATTACT 57.198 29.630 0.00 0.00 0.00 2.24
3250 3257 0.390866 CCGCCTGATGCCTAGCTATG 60.391 60.000 0.00 0.00 36.24 2.23
3251 3258 0.319728 CGCCTGATGCCTAGCTATGT 59.680 55.000 0.00 0.00 36.24 2.29
3304 3311 5.163488 TGGATGGATGATGTTTGCTGAATTC 60.163 40.000 0.00 0.00 0.00 2.17
3310 3317 7.137426 GGATGATGTTTGCTGAATTCTGATAC 58.863 38.462 15.79 9.77 0.00 2.24
3351 3358 6.128172 CCAGTCAGTTGATCAGGTTGTAATTC 60.128 42.308 0.00 0.00 0.00 2.17
3372 3379 3.699538 TCACACTAGTCACTGTGTTCTGT 59.300 43.478 7.79 6.42 43.88 3.41
3500 3508 7.185318 TGATTAATTCATGCAGGAAACCAAT 57.815 32.000 18.75 15.97 0.00 3.16
3509 3517 3.993081 TGCAGGAAACCAATTATTTTGCG 59.007 39.130 0.00 0.00 32.03 4.85
3515 3523 5.578727 GGAAACCAATTATTTTGCGCACATA 59.421 36.000 11.12 7.03 0.00 2.29
3525 3533 1.575244 TGCGCACATATCTGAAGCTC 58.425 50.000 5.66 0.00 0.00 4.09
3534 3542 5.634439 CACATATCTGAAGCTCTGACATAGC 59.366 44.000 4.71 4.71 40.40 2.97
3608 3616 7.874940 TGTCCAGAGTTTATTCAGATTGTTTG 58.125 34.615 0.00 0.00 0.00 2.93
3649 3662 3.896888 ACCTGTCATGGATTCAGCAAAAA 59.103 39.130 0.00 0.00 0.00 1.94
3694 3707 2.483329 ATCCTGGGAGGCAGGTGACT 62.483 60.000 0.00 0.00 40.59 3.41
3706 3720 3.075148 GCAGGTGACTAAGGACCTTTTC 58.925 50.000 13.11 10.06 40.85 2.29
3707 3721 3.676093 CAGGTGACTAAGGACCTTTTCC 58.324 50.000 13.11 8.15 40.85 3.13
3776 3804 7.645402 TGCATTGCTATCTCAATAATTGTGAG 58.355 34.615 10.49 12.53 43.28 3.51
3862 3892 4.326826 TCTGGGACATCACATTTCAGTTC 58.673 43.478 0.00 0.00 38.20 3.01
3897 3927 5.187576 CCAATGGTGTATGGGAAAGTGAAAT 59.812 40.000 0.00 0.00 30.53 2.17
3914 3944 8.409358 AAGTGAAATGCCAGAATAGTTTAGTT 57.591 30.769 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.900635 AACGCTTTGTTTTCTCACTGAT 57.099 36.364 0.00 0.00 37.59 2.90
11 12 2.159114 ACCAGATGCAAAACGCTTTGTT 60.159 40.909 12.51 1.48 43.34 2.83
12 13 1.408702 ACCAGATGCAAAACGCTTTGT 59.591 42.857 12.51 0.00 43.34 2.83
13 14 2.138596 ACCAGATGCAAAACGCTTTG 57.861 45.000 6.92 6.92 44.11 2.77
14 15 2.362077 AGAACCAGATGCAAAACGCTTT 59.638 40.909 0.00 0.00 43.06 3.51
15 16 1.956477 AGAACCAGATGCAAAACGCTT 59.044 42.857 0.00 0.00 43.06 4.68
16 17 1.609208 AGAACCAGATGCAAAACGCT 58.391 45.000 0.00 0.00 43.06 5.07
17 18 2.422276 AAGAACCAGATGCAAAACGC 57.578 45.000 0.00 0.00 42.89 4.84
18 19 4.675114 GTGTAAAGAACCAGATGCAAAACG 59.325 41.667 0.00 0.00 0.00 3.60
19 20 5.687285 CAGTGTAAAGAACCAGATGCAAAAC 59.313 40.000 0.00 0.00 0.00 2.43
20 21 5.735922 GCAGTGTAAAGAACCAGATGCAAAA 60.736 40.000 0.00 0.00 0.00 2.44
21 22 4.261572 GCAGTGTAAAGAACCAGATGCAAA 60.262 41.667 0.00 0.00 0.00 3.68
22 23 3.253188 GCAGTGTAAAGAACCAGATGCAA 59.747 43.478 0.00 0.00 0.00 4.08
23 24 2.813754 GCAGTGTAAAGAACCAGATGCA 59.186 45.455 0.00 0.00 0.00 3.96
24 25 2.813754 TGCAGTGTAAAGAACCAGATGC 59.186 45.455 0.00 0.00 0.00 3.91
25 26 4.696877 TGATGCAGTGTAAAGAACCAGATG 59.303 41.667 0.00 0.00 0.00 2.90
26 27 4.910195 TGATGCAGTGTAAAGAACCAGAT 58.090 39.130 0.00 0.00 0.00 2.90
27 28 4.350368 TGATGCAGTGTAAAGAACCAGA 57.650 40.909 0.00 0.00 0.00 3.86
28 29 6.372659 AGTTATGATGCAGTGTAAAGAACCAG 59.627 38.462 0.00 0.00 0.00 4.00
29 30 6.237901 AGTTATGATGCAGTGTAAAGAACCA 58.762 36.000 0.00 0.00 0.00 3.67
30 31 6.743575 AGTTATGATGCAGTGTAAAGAACC 57.256 37.500 0.00 0.00 0.00 3.62
31 32 8.289618 TGAAAGTTATGATGCAGTGTAAAGAAC 58.710 33.333 0.00 0.00 0.00 3.01
32 33 8.389779 TGAAAGTTATGATGCAGTGTAAAGAA 57.610 30.769 0.00 0.00 0.00 2.52
33 34 7.977789 TGAAAGTTATGATGCAGTGTAAAGA 57.022 32.000 0.00 0.00 0.00 2.52
34 35 8.453320 TGATGAAAGTTATGATGCAGTGTAAAG 58.547 33.333 0.00 0.00 0.00 1.85
35 36 8.334263 TGATGAAAGTTATGATGCAGTGTAAA 57.666 30.769 0.00 0.00 0.00 2.01
36 37 7.823799 TCTGATGAAAGTTATGATGCAGTGTAA 59.176 33.333 0.00 0.00 0.00 2.41
37 38 7.330262 TCTGATGAAAGTTATGATGCAGTGTA 58.670 34.615 0.00 0.00 0.00 2.90
38 39 6.175471 TCTGATGAAAGTTATGATGCAGTGT 58.825 36.000 0.00 0.00 0.00 3.55
39 40 6.673154 TCTGATGAAAGTTATGATGCAGTG 57.327 37.500 0.00 0.00 0.00 3.66
40 41 7.052248 TGATCTGATGAAAGTTATGATGCAGT 58.948 34.615 0.00 0.00 0.00 4.40
41 42 7.492352 TGATCTGATGAAAGTTATGATGCAG 57.508 36.000 0.00 0.00 0.00 4.41
42 43 7.717875 TGATGATCTGATGAAAGTTATGATGCA 59.282 33.333 0.00 0.00 0.00 3.96
43 44 8.095937 TGATGATCTGATGAAAGTTATGATGC 57.904 34.615 0.00 0.00 0.00 3.91
45 46 9.451002 GGATGATGATCTGATGAAAGTTATGAT 57.549 33.333 0.00 0.00 0.00 2.45
46 47 8.657712 AGGATGATGATCTGATGAAAGTTATGA 58.342 33.333 0.00 0.00 0.00 2.15
47 48 8.850007 AGGATGATGATCTGATGAAAGTTATG 57.150 34.615 0.00 0.00 0.00 1.90
48 49 8.882282 AGAGGATGATGATCTGATGAAAGTTAT 58.118 33.333 0.00 0.00 0.00 1.89
49 50 8.260099 AGAGGATGATGATCTGATGAAAGTTA 57.740 34.615 0.00 0.00 0.00 2.24
50 51 7.139287 AGAGGATGATGATCTGATGAAAGTT 57.861 36.000 0.00 0.00 0.00 2.66
51 52 6.750660 AGAGGATGATGATCTGATGAAAGT 57.249 37.500 0.00 0.00 0.00 2.66
52 53 9.157104 CATTAGAGGATGATGATCTGATGAAAG 57.843 37.037 0.00 0.00 38.61 2.62
53 54 7.606839 GCATTAGAGGATGATGATCTGATGAAA 59.393 37.037 9.55 0.00 38.61 2.69
54 55 7.104290 GCATTAGAGGATGATGATCTGATGAA 58.896 38.462 9.55 0.00 38.61 2.57
55 56 6.351966 GGCATTAGAGGATGATGATCTGATGA 60.352 42.308 9.55 0.00 38.61 2.92
56 57 5.818336 GGCATTAGAGGATGATGATCTGATG 59.182 44.000 0.00 0.00 39.06 3.07
57 58 5.104444 GGGCATTAGAGGATGATGATCTGAT 60.104 44.000 0.00 0.00 0.00 2.90
58 59 4.224594 GGGCATTAGAGGATGATGATCTGA 59.775 45.833 0.00 0.00 0.00 3.27
59 60 4.019591 TGGGCATTAGAGGATGATGATCTG 60.020 45.833 0.00 0.00 0.00 2.90
60 61 4.173594 TGGGCATTAGAGGATGATGATCT 58.826 43.478 0.00 0.00 0.00 2.75
61 62 4.564782 TGGGCATTAGAGGATGATGATC 57.435 45.455 0.00 0.00 0.00 2.92
62 63 5.329191 TTTGGGCATTAGAGGATGATGAT 57.671 39.130 0.00 0.00 0.00 2.45
63 64 4.794311 TTTGGGCATTAGAGGATGATGA 57.206 40.909 0.00 0.00 0.00 2.92
64 65 4.321750 GCATTTGGGCATTAGAGGATGATG 60.322 45.833 0.00 0.00 0.00 3.07
65 66 3.830755 GCATTTGGGCATTAGAGGATGAT 59.169 43.478 0.00 0.00 0.00 2.45
66 67 3.225104 GCATTTGGGCATTAGAGGATGA 58.775 45.455 0.00 0.00 0.00 2.92
67 68 2.960384 TGCATTTGGGCATTAGAGGATG 59.040 45.455 0.00 0.00 39.25 3.51
68 69 3.228453 CTGCATTTGGGCATTAGAGGAT 58.772 45.455 0.00 0.00 43.97 3.24
69 70 2.658285 CTGCATTTGGGCATTAGAGGA 58.342 47.619 0.00 0.00 43.97 3.71
70 71 1.068127 GCTGCATTTGGGCATTAGAGG 59.932 52.381 0.00 0.00 43.97 3.69
71 72 1.268896 CGCTGCATTTGGGCATTAGAG 60.269 52.381 0.00 0.00 43.97 2.43
72 73 0.740149 CGCTGCATTTGGGCATTAGA 59.260 50.000 0.00 0.00 43.97 2.10
73 74 0.457035 ACGCTGCATTTGGGCATTAG 59.543 50.000 0.00 0.00 43.97 1.73
74 75 0.173029 CACGCTGCATTTGGGCATTA 59.827 50.000 0.00 0.00 43.97 1.90
75 76 1.079681 CACGCTGCATTTGGGCATT 60.080 52.632 0.00 0.00 43.97 3.56
76 77 2.574929 CACGCTGCATTTGGGCAT 59.425 55.556 0.00 0.00 43.97 4.40
77 78 4.360964 GCACGCTGCATTTGGGCA 62.361 61.111 0.00 0.00 44.26 5.36
86 87 4.345962 TGCAACATGGCACGCTGC 62.346 61.111 1.42 1.42 44.08 5.25
92 93 0.251253 TGATGGAGTGCAACATGGCA 60.251 50.000 4.71 0.00 41.43 4.92
93 94 0.889994 TTGATGGAGTGCAACATGGC 59.110 50.000 4.71 0.00 41.43 4.40
94 95 2.821378 TCTTTGATGGAGTGCAACATGG 59.179 45.455 4.71 0.00 41.43 3.66
95 96 4.508461 TTCTTTGATGGAGTGCAACATG 57.492 40.909 4.71 0.00 41.43 3.21
96 97 4.619863 GCATTCTTTGATGGAGTGCAACAT 60.620 41.667 0.00 0.00 43.00 2.71
97 98 3.305539 GCATTCTTTGATGGAGTGCAACA 60.306 43.478 6.37 0.00 43.00 3.33
98 99 3.248266 GCATTCTTTGATGGAGTGCAAC 58.752 45.455 6.37 0.00 43.00 4.17
99 100 2.231964 GGCATTCTTTGATGGAGTGCAA 59.768 45.455 11.86 0.00 44.50 4.08
100 101 1.820519 GGCATTCTTTGATGGAGTGCA 59.179 47.619 11.86 0.00 44.50 4.57
101 102 1.202222 CGGCATTCTTTGATGGAGTGC 60.202 52.381 0.00 0.00 42.85 4.40
102 103 1.202222 GCGGCATTCTTTGATGGAGTG 60.202 52.381 0.00 0.00 0.00 3.51
103 104 1.098050 GCGGCATTCTTTGATGGAGT 58.902 50.000 0.00 0.00 0.00 3.85
104 105 0.383231 GGCGGCATTCTTTGATGGAG 59.617 55.000 3.07 0.00 0.00 3.86
105 106 0.323269 TGGCGGCATTCTTTGATGGA 60.323 50.000 7.97 0.00 0.00 3.41
106 107 0.101759 CTGGCGGCATTCTTTGATGG 59.898 55.000 13.85 0.00 0.00 3.51
107 108 1.097232 TCTGGCGGCATTCTTTGATG 58.903 50.000 13.85 0.00 0.00 3.07
108 109 1.838112 TTCTGGCGGCATTCTTTGAT 58.162 45.000 13.85 0.00 0.00 2.57
109 110 1.614996 TTTCTGGCGGCATTCTTTGA 58.385 45.000 13.85 1.43 0.00 2.69
110 111 2.660189 ATTTCTGGCGGCATTCTTTG 57.340 45.000 13.85 0.00 0.00 2.77
111 112 3.683365 AAATTTCTGGCGGCATTCTTT 57.317 38.095 13.85 7.58 0.00 2.52
112 113 3.006752 TGAAAATTTCTGGCGGCATTCTT 59.993 39.130 13.85 1.01 0.00 2.52
113 114 2.562298 TGAAAATTTCTGGCGGCATTCT 59.438 40.909 13.85 0.00 0.00 2.40
114 115 2.925563 CTGAAAATTTCTGGCGGCATTC 59.074 45.455 13.85 12.90 0.00 2.67
115 116 2.562298 TCTGAAAATTTCTGGCGGCATT 59.438 40.909 13.85 1.71 0.00 3.56
116 117 2.165030 CTCTGAAAATTTCTGGCGGCAT 59.835 45.455 13.85 0.00 0.00 4.40
117 118 1.541147 CTCTGAAAATTTCTGGCGGCA 59.459 47.619 12.58 12.58 0.00 5.69
118 119 1.733718 GCTCTGAAAATTTCTGGCGGC 60.734 52.381 11.71 0.00 0.00 6.53
119 120 1.135286 GGCTCTGAAAATTTCTGGCGG 60.135 52.381 11.71 0.00 0.00 6.13
120 121 1.541147 TGGCTCTGAAAATTTCTGGCG 59.459 47.619 11.71 5.86 0.00 5.69
121 122 2.297033 TGTGGCTCTGAAAATTTCTGGC 59.703 45.455 11.71 12.67 0.00 4.85
122 123 4.589216 TTGTGGCTCTGAAAATTTCTGG 57.411 40.909 11.71 5.19 0.00 3.86
123 124 5.594926 ACTTTGTGGCTCTGAAAATTTCTG 58.405 37.500 7.29 6.77 0.00 3.02
124 125 5.221322 GGACTTTGTGGCTCTGAAAATTTCT 60.221 40.000 7.29 0.00 0.00 2.52
125 126 4.984785 GGACTTTGTGGCTCTGAAAATTTC 59.015 41.667 0.00 0.00 0.00 2.17
126 127 4.405358 TGGACTTTGTGGCTCTGAAAATTT 59.595 37.500 0.00 0.00 0.00 1.82
127 128 3.960102 TGGACTTTGTGGCTCTGAAAATT 59.040 39.130 0.00 0.00 0.00 1.82
128 129 3.319122 GTGGACTTTGTGGCTCTGAAAAT 59.681 43.478 0.00 0.00 0.00 1.82
129 130 2.687935 GTGGACTTTGTGGCTCTGAAAA 59.312 45.455 0.00 0.00 0.00 2.29
130 131 2.297701 GTGGACTTTGTGGCTCTGAAA 58.702 47.619 0.00 0.00 0.00 2.69
131 132 1.211703 TGTGGACTTTGTGGCTCTGAA 59.788 47.619 0.00 0.00 0.00 3.02
132 133 0.836606 TGTGGACTTTGTGGCTCTGA 59.163 50.000 0.00 0.00 0.00 3.27
133 134 0.947244 GTGTGGACTTTGTGGCTCTG 59.053 55.000 0.00 0.00 0.00 3.35
134 135 0.839946 AGTGTGGACTTTGTGGCTCT 59.160 50.000 0.00 0.00 0.00 4.09
135 136 1.202698 AGAGTGTGGACTTTGTGGCTC 60.203 52.381 0.00 0.00 30.16 4.70
136 137 0.839946 AGAGTGTGGACTTTGTGGCT 59.160 50.000 0.00 0.00 30.16 4.75
137 138 0.947244 CAGAGTGTGGACTTTGTGGC 59.053 55.000 0.00 0.00 31.11 5.01
138 139 2.620251 TCAGAGTGTGGACTTTGTGG 57.380 50.000 0.00 0.00 36.05 4.17
139 140 3.879295 ACAATCAGAGTGTGGACTTTGTG 59.121 43.478 1.85 0.00 36.05 3.33
140 141 4.156455 ACAATCAGAGTGTGGACTTTGT 57.844 40.909 1.85 0.00 36.05 2.83
141 142 5.178252 CAGTACAATCAGAGTGTGGACTTTG 59.822 44.000 13.85 0.00 35.96 2.77
142 143 5.300752 CAGTACAATCAGAGTGTGGACTTT 58.699 41.667 13.85 0.00 30.16 2.66
143 144 4.800914 GCAGTACAATCAGAGTGTGGACTT 60.801 45.833 13.85 0.00 30.16 3.01
144 145 3.306364 GCAGTACAATCAGAGTGTGGACT 60.306 47.826 13.85 7.15 33.98 3.85
145 146 2.996621 GCAGTACAATCAGAGTGTGGAC 59.003 50.000 13.85 4.86 0.00 4.02
146 147 2.028112 GGCAGTACAATCAGAGTGTGGA 60.028 50.000 13.85 0.00 0.00 4.02
147 148 2.289631 TGGCAGTACAATCAGAGTGTGG 60.290 50.000 13.85 4.53 0.00 4.17
148 149 3.044235 TGGCAGTACAATCAGAGTGTG 57.956 47.619 13.85 0.00 0.00 3.82
149 150 3.517100 AGATGGCAGTACAATCAGAGTGT 59.483 43.478 8.84 8.84 0.00 3.55
150 151 4.134379 AGATGGCAGTACAATCAGAGTG 57.866 45.455 0.00 0.00 0.00 3.51
151 152 4.383552 GGAAGATGGCAGTACAATCAGAGT 60.384 45.833 0.00 0.00 0.00 3.24
152 153 4.125703 GGAAGATGGCAGTACAATCAGAG 58.874 47.826 0.00 0.00 0.00 3.35
153 154 3.430790 CGGAAGATGGCAGTACAATCAGA 60.431 47.826 0.00 0.00 0.00 3.27
154 155 2.868583 CGGAAGATGGCAGTACAATCAG 59.131 50.000 0.00 0.00 0.00 2.90
155 156 2.419990 CCGGAAGATGGCAGTACAATCA 60.420 50.000 0.00 0.00 0.00 2.57
156 157 2.213499 CCGGAAGATGGCAGTACAATC 58.787 52.381 0.00 0.00 0.00 2.67
157 158 1.559682 ACCGGAAGATGGCAGTACAAT 59.440 47.619 9.46 0.00 0.00 2.71
158 159 0.981183 ACCGGAAGATGGCAGTACAA 59.019 50.000 9.46 0.00 0.00 2.41
159 160 0.249120 CACCGGAAGATGGCAGTACA 59.751 55.000 9.46 0.00 0.00 2.90
160 161 0.249398 ACACCGGAAGATGGCAGTAC 59.751 55.000 9.46 0.00 0.00 2.73
161 162 0.981183 AACACCGGAAGATGGCAGTA 59.019 50.000 9.46 0.00 0.00 2.74
162 163 0.110486 AAACACCGGAAGATGGCAGT 59.890 50.000 9.46 0.00 0.00 4.40
163 164 0.523072 CAAACACCGGAAGATGGCAG 59.477 55.000 9.46 0.00 0.00 4.85
164 165 0.109532 TCAAACACCGGAAGATGGCA 59.890 50.000 9.46 0.00 0.00 4.92
165 166 0.804989 CTCAAACACCGGAAGATGGC 59.195 55.000 9.46 0.00 0.00 4.40
166 167 0.804989 GCTCAAACACCGGAAGATGG 59.195 55.000 9.46 0.00 0.00 3.51
167 168 1.522668 TGCTCAAACACCGGAAGATG 58.477 50.000 9.46 0.00 0.00 2.90
168 169 2.154462 CTTGCTCAAACACCGGAAGAT 58.846 47.619 9.46 0.00 0.00 2.40
169 170 1.134220 ACTTGCTCAAACACCGGAAGA 60.134 47.619 9.46 0.00 31.62 2.87
170 171 1.264288 GACTTGCTCAAACACCGGAAG 59.736 52.381 9.46 1.96 33.12 3.46
171 172 1.134220 AGACTTGCTCAAACACCGGAA 60.134 47.619 9.46 0.00 0.00 4.30
172 173 0.468226 AGACTTGCTCAAACACCGGA 59.532 50.000 9.46 0.00 0.00 5.14
173 174 0.868406 GAGACTTGCTCAAACACCGG 59.132 55.000 0.00 0.00 43.38 5.28
182 183 1.597742 TGCCAACTTGAGACTTGCTC 58.402 50.000 0.00 0.00 44.21 4.26
183 184 1.952296 CTTGCCAACTTGAGACTTGCT 59.048 47.619 0.00 0.00 0.00 3.91
184 185 1.000938 CCTTGCCAACTTGAGACTTGC 60.001 52.381 0.00 0.00 0.00 4.01
185 186 2.291741 GTCCTTGCCAACTTGAGACTTG 59.708 50.000 0.00 0.00 0.00 3.16
186 187 2.173569 AGTCCTTGCCAACTTGAGACTT 59.826 45.455 0.00 0.00 29.06 3.01
187 188 1.771255 AGTCCTTGCCAACTTGAGACT 59.229 47.619 0.00 0.00 0.00 3.24
188 189 1.876156 CAGTCCTTGCCAACTTGAGAC 59.124 52.381 0.00 0.00 0.00 3.36
189 190 1.490490 ACAGTCCTTGCCAACTTGAGA 59.510 47.619 0.00 0.00 0.00 3.27
190 191 1.972872 ACAGTCCTTGCCAACTTGAG 58.027 50.000 0.00 0.00 0.00 3.02
191 192 2.023673 CAACAGTCCTTGCCAACTTGA 58.976 47.619 0.00 0.00 0.00 3.02
192 193 1.536709 GCAACAGTCCTTGCCAACTTG 60.537 52.381 0.00 0.00 40.68 3.16
193 194 0.746659 GCAACAGTCCTTGCCAACTT 59.253 50.000 0.00 0.00 40.68 2.66
194 195 1.447317 CGCAACAGTCCTTGCCAACT 61.447 55.000 0.00 0.00 43.15 3.16
195 196 1.008538 CGCAACAGTCCTTGCCAAC 60.009 57.895 0.00 0.00 43.15 3.77
196 197 2.844451 GCGCAACAGTCCTTGCCAA 61.844 57.895 0.30 0.00 43.15 4.52
197 198 2.390306 TAGCGCAACAGTCCTTGCCA 62.390 55.000 11.47 0.00 43.15 4.92
198 199 1.639298 CTAGCGCAACAGTCCTTGCC 61.639 60.000 11.47 0.00 43.15 4.52
199 200 1.790387 CTAGCGCAACAGTCCTTGC 59.210 57.895 11.47 0.00 42.73 4.01
200 201 1.639298 GGCTAGCGCAACAGTCCTTG 61.639 60.000 11.47 0.00 38.10 3.61
201 202 1.376037 GGCTAGCGCAACAGTCCTT 60.376 57.895 11.47 0.00 38.10 3.36
202 203 2.232298 GAGGCTAGCGCAACAGTCCT 62.232 60.000 11.47 13.65 38.10 3.85
203 204 1.811679 GAGGCTAGCGCAACAGTCC 60.812 63.158 11.47 9.26 38.10 3.85
204 205 1.811679 GGAGGCTAGCGCAACAGTC 60.812 63.158 11.47 5.01 38.10 3.51
205 206 1.903877 ATGGAGGCTAGCGCAACAGT 61.904 55.000 11.47 0.00 38.10 3.55
206 207 0.104855 TATGGAGGCTAGCGCAACAG 59.895 55.000 11.47 4.54 38.10 3.16
207 208 0.104855 CTATGGAGGCTAGCGCAACA 59.895 55.000 11.47 5.58 38.10 3.33
208 209 0.389391 TCTATGGAGGCTAGCGCAAC 59.611 55.000 11.47 0.00 38.10 4.17
209 210 1.342074 ATCTATGGAGGCTAGCGCAA 58.658 50.000 11.47 0.00 38.10 4.85
210 211 1.342074 AATCTATGGAGGCTAGCGCA 58.658 50.000 11.47 0.00 38.10 6.09
211 212 2.464157 AAATCTATGGAGGCTAGCGC 57.536 50.000 9.00 0.00 0.00 5.92
241 242 9.794719 GGGCTAAATATTACTCCTCATTTACTT 57.205 33.333 0.00 0.00 0.00 2.24
242 243 9.172060 AGGGCTAAATATTACTCCTCATTTACT 57.828 33.333 0.00 0.00 0.00 2.24
243 244 9.438228 GAGGGCTAAATATTACTCCTCATTTAC 57.562 37.037 15.98 0.00 39.14 2.01
244 245 9.393786 AGAGGGCTAAATATTACTCCTCATTTA 57.606 33.333 19.90 0.00 41.09 1.40
245 246 8.281529 AGAGGGCTAAATATTACTCCTCATTT 57.718 34.615 19.90 6.02 41.09 2.32
246 247 7.880265 AGAGGGCTAAATATTACTCCTCATT 57.120 36.000 19.90 6.49 41.09 2.57
247 248 7.514127 TCAAGAGGGCTAAATATTACTCCTCAT 59.486 37.037 19.90 11.42 41.09 2.90
248 249 6.844388 TCAAGAGGGCTAAATATTACTCCTCA 59.156 38.462 19.90 6.02 41.09 3.86
249 250 7.156000 GTCAAGAGGGCTAAATATTACTCCTC 58.844 42.308 14.29 14.29 39.49 3.71
250 251 6.043358 GGTCAAGAGGGCTAAATATTACTCCT 59.957 42.308 0.00 0.00 0.00 3.69
251 252 6.231951 GGTCAAGAGGGCTAAATATTACTCC 58.768 44.000 0.00 0.00 0.00 3.85
252 253 6.231951 GGGTCAAGAGGGCTAAATATTACTC 58.768 44.000 0.00 0.00 0.00 2.59
253 254 5.221661 CGGGTCAAGAGGGCTAAATATTACT 60.222 44.000 0.00 0.00 0.00 2.24
254 255 4.995487 CGGGTCAAGAGGGCTAAATATTAC 59.005 45.833 0.00 0.00 0.00 1.89
255 256 4.041198 CCGGGTCAAGAGGGCTAAATATTA 59.959 45.833 0.00 0.00 0.00 0.98
256 257 3.181443 CCGGGTCAAGAGGGCTAAATATT 60.181 47.826 0.00 0.00 0.00 1.28
257 258 2.372172 CCGGGTCAAGAGGGCTAAATAT 59.628 50.000 0.00 0.00 0.00 1.28
258 259 1.766496 CCGGGTCAAGAGGGCTAAATA 59.234 52.381 0.00 0.00 0.00 1.40
259 260 0.546598 CCGGGTCAAGAGGGCTAAAT 59.453 55.000 0.00 0.00 0.00 1.40
260 261 0.545787 TCCGGGTCAAGAGGGCTAAA 60.546 55.000 0.00 0.00 0.00 1.85
261 262 1.079621 TCCGGGTCAAGAGGGCTAA 59.920 57.895 0.00 0.00 0.00 3.09
262 263 1.684734 GTCCGGGTCAAGAGGGCTA 60.685 63.158 0.00 0.00 0.00 3.93
263 264 3.003763 GTCCGGGTCAAGAGGGCT 61.004 66.667 0.00 0.00 0.00 5.19
264 265 4.097361 GGTCCGGGTCAAGAGGGC 62.097 72.222 0.00 0.00 0.00 5.19
265 266 3.771160 CGGTCCGGGTCAAGAGGG 61.771 72.222 2.34 0.00 0.00 4.30
266 267 3.771160 CCGGTCCGGGTCAAGAGG 61.771 72.222 23.59 0.00 44.15 3.69
282 283 1.974973 TTAGGTTCGGCCCGGATTCC 61.975 60.000 0.73 0.00 38.26 3.01
283 284 0.108019 ATTAGGTTCGGCCCGGATTC 59.892 55.000 0.73 0.00 38.26 2.52
284 285 0.108019 GATTAGGTTCGGCCCGGATT 59.892 55.000 0.73 0.00 38.26 3.01
285 286 1.052124 TGATTAGGTTCGGCCCGGAT 61.052 55.000 0.73 0.00 38.26 4.18
286 287 1.682451 CTGATTAGGTTCGGCCCGGA 61.682 60.000 0.73 0.00 38.26 5.14
287 288 1.227556 CTGATTAGGTTCGGCCCGG 60.228 63.158 1.90 0.00 38.26 5.73
288 289 1.227556 CCTGATTAGGTTCGGCCCG 60.228 63.158 0.00 0.00 39.39 6.13
289 290 1.526225 GCCTGATTAGGTTCGGCCC 60.526 63.158 5.29 0.00 46.41 5.80
290 291 4.142780 GCCTGATTAGGTTCGGCC 57.857 61.111 5.29 0.00 46.41 6.13
291 292 1.095807 GTGGCCTGATTAGGTTCGGC 61.096 60.000 3.32 0.00 46.41 5.54
292 293 0.251916 TGTGGCCTGATTAGGTTCGG 59.748 55.000 3.32 0.00 46.41 4.30
293 294 1.656652 CTGTGGCCTGATTAGGTTCG 58.343 55.000 3.32 0.00 46.41 3.95
294 295 1.383523 GCTGTGGCCTGATTAGGTTC 58.616 55.000 3.32 0.00 46.41 3.62
295 296 3.577389 GCTGTGGCCTGATTAGGTT 57.423 52.632 3.32 0.00 46.41 3.50
333 334 1.022451 TATTCCGGTGTTTCTGCGGC 61.022 55.000 0.00 0.00 0.00 6.53
334 335 1.663695 ATATTCCGGTGTTTCTGCGG 58.336 50.000 0.00 0.00 0.00 5.69
335 336 2.031683 GGAATATTCCGGTGTTTCTGCG 59.968 50.000 18.61 0.00 37.65 5.18
336 337 3.692791 GGAATATTCCGGTGTTTCTGC 57.307 47.619 18.61 0.00 37.65 4.26
347 348 1.594331 GCTGGTGGACGGAATATTCC 58.406 55.000 22.63 22.63 44.05 3.01
348 349 1.217882 CGCTGGTGGACGGAATATTC 58.782 55.000 6.93 6.93 0.00 1.75
349 350 0.539986 ACGCTGGTGGACGGAATATT 59.460 50.000 0.00 0.00 0.00 1.28
350 351 0.179084 CACGCTGGTGGACGGAATAT 60.179 55.000 0.00 0.00 40.58 1.28
351 352 1.216977 CACGCTGGTGGACGGAATA 59.783 57.895 0.00 0.00 40.58 1.75
352 353 2.047274 CACGCTGGTGGACGGAAT 60.047 61.111 0.00 0.00 40.58 3.01
361 362 2.997897 GAGGAGGGACACGCTGGT 60.998 66.667 0.00 0.00 0.00 4.00
362 363 3.775654 GGAGGAGGGACACGCTGG 61.776 72.222 0.00 0.00 0.00 4.85
363 364 3.775654 GGGAGGAGGGACACGCTG 61.776 72.222 0.00 0.00 0.00 5.18
364 365 3.966930 GAGGGAGGAGGGACACGCT 62.967 68.421 0.00 0.00 0.00 5.07
365 366 3.462678 GAGGGAGGAGGGACACGC 61.463 72.222 0.00 0.00 0.00 5.34
366 367 1.755008 GAGAGGGAGGAGGGACACG 60.755 68.421 0.00 0.00 0.00 4.49
367 368 1.382009 GGAGAGGGAGGAGGGACAC 60.382 68.421 0.00 0.00 0.00 3.67
368 369 2.637640 GGGAGAGGGAGGAGGGACA 61.638 68.421 0.00 0.00 0.00 4.02
369 370 2.284151 GGGAGAGGGAGGAGGGAC 59.716 72.222 0.00 0.00 0.00 4.46
370 371 2.015726 GAGGGAGAGGGAGGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
371 372 1.673928 ATGAGGGAGAGGGAGGAGGG 61.674 65.000 0.00 0.00 0.00 4.30
372 373 0.178935 GATGAGGGAGAGGGAGGAGG 60.179 65.000 0.00 0.00 0.00 4.30
373 374 0.178935 GGATGAGGGAGAGGGAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
374 375 1.669927 GGGATGAGGGAGAGGGAGGA 61.670 65.000 0.00 0.00 0.00 3.71
375 376 1.152139 GGGATGAGGGAGAGGGAGG 60.152 68.421 0.00 0.00 0.00 4.30
376 377 1.152139 GGGGATGAGGGAGAGGGAG 60.152 68.421 0.00 0.00 0.00 4.30
377 378 1.630333 AGGGGATGAGGGAGAGGGA 60.630 63.158 0.00 0.00 0.00 4.20
378 379 1.152139 GAGGGGATGAGGGAGAGGG 60.152 68.421 0.00 0.00 0.00 4.30
379 380 1.152139 GGAGGGGATGAGGGAGAGG 60.152 68.421 0.00 0.00 0.00 3.69
380 381 1.152139 GGGAGGGGATGAGGGAGAG 60.152 68.421 0.00 0.00 0.00 3.20
381 382 2.727071 GGGGAGGGGATGAGGGAGA 61.727 68.421 0.00 0.00 0.00 3.71
382 383 2.122189 GGGGAGGGGATGAGGGAG 60.122 72.222 0.00 0.00 0.00 4.30
383 384 1.925143 AATGGGGAGGGGATGAGGGA 61.925 60.000 0.00 0.00 0.00 4.20
384 385 1.387926 AATGGGGAGGGGATGAGGG 60.388 63.158 0.00 0.00 0.00 4.30
385 386 1.430369 GGAATGGGGAGGGGATGAGG 61.430 65.000 0.00 0.00 0.00 3.86
386 387 1.430369 GGGAATGGGGAGGGGATGAG 61.430 65.000 0.00 0.00 0.00 2.90
387 388 1.387347 GGGAATGGGGAGGGGATGA 60.387 63.158 0.00 0.00 0.00 2.92
388 389 2.473365 GGGGAATGGGGAGGGGATG 61.473 68.421 0.00 0.00 0.00 3.51
389 390 2.037238 GGGGAATGGGGAGGGGAT 60.037 66.667 0.00 0.00 0.00 3.85
390 391 3.309509 AGGGGAATGGGGAGGGGA 61.310 66.667 0.00 0.00 0.00 4.81
391 392 2.778717 GAGGGGAATGGGGAGGGG 60.779 72.222 0.00 0.00 0.00 4.79
392 393 2.778717 GGAGGGGAATGGGGAGGG 60.779 72.222 0.00 0.00 0.00 4.30
393 394 1.772156 GAGGAGGGGAATGGGGAGG 60.772 68.421 0.00 0.00 0.00 4.30
394 395 1.772156 GGAGGAGGGGAATGGGGAG 60.772 68.421 0.00 0.00 0.00 4.30
395 396 2.376842 GGAGGAGGGGAATGGGGA 59.623 66.667 0.00 0.00 0.00 4.81
396 397 2.778717 GGGAGGAGGGGAATGGGG 60.779 72.222 0.00 0.00 0.00 4.96
397 398 1.772156 GAGGGAGGAGGGGAATGGG 60.772 68.421 0.00 0.00 0.00 4.00
398 399 1.772156 GGAGGGAGGAGGGGAATGG 60.772 68.421 0.00 0.00 0.00 3.16
399 400 1.772156 GGGAGGGAGGAGGGGAATG 60.772 68.421 0.00 0.00 0.00 2.67
400 401 2.712746 GGGAGGGAGGAGGGGAAT 59.287 66.667 0.00 0.00 0.00 3.01
401 402 4.089757 CGGGAGGGAGGAGGGGAA 62.090 72.222 0.00 0.00 0.00 3.97
403 404 4.862823 GACGGGAGGGAGGAGGGG 62.863 77.778 0.00 0.00 0.00 4.79
404 405 3.318922 AAGACGGGAGGGAGGAGGG 62.319 68.421 0.00 0.00 0.00 4.30
405 406 1.758906 GAAGACGGGAGGGAGGAGG 60.759 68.421 0.00 0.00 0.00 4.30
406 407 0.753848 GAGAAGACGGGAGGGAGGAG 60.754 65.000 0.00 0.00 0.00 3.69
407 408 1.215679 AGAGAAGACGGGAGGGAGGA 61.216 60.000 0.00 0.00 0.00 3.71
408 409 0.753848 GAGAGAAGACGGGAGGGAGG 60.754 65.000 0.00 0.00 0.00 4.30
409 410 0.033991 TGAGAGAAGACGGGAGGGAG 60.034 60.000 0.00 0.00 0.00 4.30
410 411 0.033991 CTGAGAGAAGACGGGAGGGA 60.034 60.000 0.00 0.00 0.00 4.20
411 412 0.323908 ACTGAGAGAAGACGGGAGGG 60.324 60.000 0.00 0.00 0.00 4.30
412 413 1.099689 GACTGAGAGAAGACGGGAGG 58.900 60.000 0.00 0.00 0.00 4.30
413 414 2.014128 GAGACTGAGAGAAGACGGGAG 58.986 57.143 0.00 0.00 0.00 4.30
414 415 1.340211 GGAGACTGAGAGAAGACGGGA 60.340 57.143 0.00 0.00 0.00 5.14
415 416 1.099689 GGAGACTGAGAGAAGACGGG 58.900 60.000 0.00 0.00 0.00 5.28
416 417 2.014128 GAGGAGACTGAGAGAAGACGG 58.986 57.143 0.00 0.00 44.43 4.79
417 418 2.014128 GGAGGAGACTGAGAGAAGACG 58.986 57.143 0.00 0.00 44.43 4.18
418 419 2.014128 CGGAGGAGACTGAGAGAAGAC 58.986 57.143 0.00 0.00 44.43 3.01
419 420 2.411628 CGGAGGAGACTGAGAGAAGA 57.588 55.000 0.00 0.00 44.43 2.87
434 435 4.506255 GGGGATTGGCCACCGGAG 62.506 72.222 9.46 0.00 38.95 4.63
891 892 2.124983 TCGGAGGATTGCTGCTGC 60.125 61.111 8.89 8.89 40.20 5.25
895 896 2.892425 GCCGTCGGAGGATTGCTG 60.892 66.667 17.49 0.00 0.00 4.41
897 898 4.467084 TGGCCGTCGGAGGATTGC 62.467 66.667 17.49 0.00 0.00 3.56
899 900 4.143333 CGTGGCCGTCGGAGGATT 62.143 66.667 17.49 0.00 0.00 3.01
972 976 1.274703 GGGAGATGAAGGGCAGGACA 61.275 60.000 0.00 0.00 0.00 4.02
1113 1117 1.563173 GTTGTTGCTGTCGTCGGAC 59.437 57.895 0.00 0.00 43.71 4.79
1443 1447 2.676121 TGGCCATTGAACCCAGCG 60.676 61.111 0.00 0.00 0.00 5.18
1626 1630 2.596338 TCCCGTGCAGAGACGTCA 60.596 61.111 19.50 0.00 37.66 4.35
2094 2098 6.652481 CCAAGGAGGCATTATAGATTGTACTG 59.348 42.308 0.00 0.00 0.00 2.74
2238 2242 4.388465 CCAGGCTGAGGGAGATCA 57.612 61.111 17.94 0.00 0.00 2.92
2507 2511 0.632835 ATGGATGAATGTGTGGGGCT 59.367 50.000 0.00 0.00 0.00 5.19
3147 3152 2.743553 TCTCTCTCATGACCTGCATCA 58.256 47.619 0.00 0.00 34.15 3.07
3212 3217 3.242413 GCGGCAACATGACTACAACATAG 60.242 47.826 0.00 0.00 0.00 2.23
3213 3218 2.675844 GCGGCAACATGACTACAACATA 59.324 45.455 0.00 0.00 0.00 2.29
3220 3225 0.541392 ATCAGGCGGCAACATGACTA 59.459 50.000 13.08 0.00 0.00 2.59
3250 3257 5.695363 GGACACCAAAGTCTAAACTCTACAC 59.305 44.000 0.00 0.00 38.57 2.90
3251 3258 5.601313 AGGACACCAAAGTCTAAACTCTACA 59.399 40.000 0.00 0.00 38.57 2.74
3304 3311 2.584492 TGATCACAGGCACGTATCAG 57.416 50.000 0.00 0.00 0.00 2.90
3310 3317 1.012086 CTGGATTGATCACAGGCACG 58.988 55.000 0.00 0.00 0.00 5.34
3482 3490 7.148205 GCAAAATAATTGGTTTCCTGCATGAAT 60.148 33.333 5.20 0.00 0.00 2.57
3500 3508 5.066375 AGCTTCAGATATGTGCGCAAAATAA 59.934 36.000 14.00 0.00 0.00 1.40
3509 3517 3.790091 TGTCAGAGCTTCAGATATGTGC 58.210 45.455 0.00 1.10 0.00 4.57
3525 3533 6.457355 AGAATCTTATGCTGAGCTATGTCAG 58.543 40.000 5.83 0.00 45.91 3.51
3534 3542 8.060679 CACAATTACGAAGAATCTTATGCTGAG 58.939 37.037 0.00 0.00 0.00 3.35
3608 3616 4.440127 CCAACCATGCCAAGCGCC 62.440 66.667 2.29 0.00 36.24 6.53
3694 3707 2.755019 AGAGGGGGAAAAGGTCCTTA 57.245 50.000 4.04 0.00 46.92 2.69
3706 3720 2.576191 TGTCCATTTTGTCTAGAGGGGG 59.424 50.000 0.00 0.00 0.00 5.40
3707 3721 3.264450 AGTGTCCATTTTGTCTAGAGGGG 59.736 47.826 0.00 0.00 0.00 4.79
3711 3734 6.768483 TCATTCAGTGTCCATTTTGTCTAGA 58.232 36.000 0.00 0.00 0.00 2.43
3794 3824 9.065798 TCACAAATCAAATCATACTGACTGAAA 57.934 29.630 0.00 0.00 29.01 2.69
3897 3927 5.001232 GTGTGGAACTAAACTATTCTGGCA 58.999 41.667 0.00 0.00 38.04 4.92
3914 3944 0.323629 GGATTCGGTTCAGGTGTGGA 59.676 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.