Multiple sequence alignment - TraesCS5D01G091100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G091100 chr5D 100.000 4929 0 0 1 4929 98258195 98263123 0.000000e+00 9103.0
1 TraesCS5D01G091100 chr5D 92.699 767 44 8 4167 4929 124347682 124346924 0.000000e+00 1096.0
2 TraesCS5D01G091100 chr5D 100.000 36 0 0 4130 4165 98278647 98278612 3.180000e-07 67.6
3 TraesCS5D01G091100 chr5B 95.820 3565 98 19 632 4178 107565724 107569255 0.000000e+00 5710.0
4 TraesCS5D01G091100 chr5B 94.444 36 2 0 419 454 107390637 107390672 6.890000e-04 56.5
5 TraesCS5D01G091100 chr5A 93.887 3746 144 30 472 4178 104981063 104977364 0.000000e+00 5570.0
6 TraesCS5D01G091100 chr5A 84.354 147 12 3 316 454 104981960 104981817 3.100000e-27 134.0
7 TraesCS5D01G091100 chr7D 97.196 749 18 2 4182 4929 192028875 192029621 0.000000e+00 1264.0
8 TraesCS5D01G091100 chr7D 92.706 754 51 4 4179 4929 548913052 548912300 0.000000e+00 1085.0
9 TraesCS5D01G091100 chr6D 96.714 700 20 2 4172 4868 246929289 246928590 0.000000e+00 1162.0
10 TraesCS5D01G091100 chr2D 91.777 754 52 6 4179 4929 6376785 6376039 0.000000e+00 1040.0
11 TraesCS5D01G091100 chr2D 92.308 403 22 4 4527 4929 6398876 6398483 9.260000e-157 564.0
12 TraesCS5D01G091100 chr4D 91.645 754 53 6 4179 4929 112066208 112065462 0.000000e+00 1035.0
13 TraesCS5D01G091100 chr7A 90.646 759 66 5 4175 4929 64513992 64514749 0.000000e+00 1003.0
14 TraesCS5D01G091100 chr7A 89.918 734 49 14 4199 4929 85405685 85406396 0.000000e+00 922.0
15 TraesCS5D01G091100 chr2B 90.065 765 65 11 4171 4929 170852913 170853672 0.000000e+00 981.0
16 TraesCS5D01G091100 chr3D 100.000 32 0 0 2797 2828 79525093 79525062 5.330000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G091100 chr5D 98258195 98263123 4928 False 9103 9103 100.0000 1 4929 1 chr5D.!!$F1 4928
1 TraesCS5D01G091100 chr5D 124346924 124347682 758 True 1096 1096 92.6990 4167 4929 1 chr5D.!!$R2 762
2 TraesCS5D01G091100 chr5B 107565724 107569255 3531 False 5710 5710 95.8200 632 4178 1 chr5B.!!$F2 3546
3 TraesCS5D01G091100 chr5A 104977364 104981960 4596 True 2852 5570 89.1205 316 4178 2 chr5A.!!$R1 3862
4 TraesCS5D01G091100 chr7D 192028875 192029621 746 False 1264 1264 97.1960 4182 4929 1 chr7D.!!$F1 747
5 TraesCS5D01G091100 chr7D 548912300 548913052 752 True 1085 1085 92.7060 4179 4929 1 chr7D.!!$R1 750
6 TraesCS5D01G091100 chr6D 246928590 246929289 699 True 1162 1162 96.7140 4172 4868 1 chr6D.!!$R1 696
7 TraesCS5D01G091100 chr2D 6376039 6376785 746 True 1040 1040 91.7770 4179 4929 1 chr2D.!!$R1 750
8 TraesCS5D01G091100 chr4D 112065462 112066208 746 True 1035 1035 91.6450 4179 4929 1 chr4D.!!$R1 750
9 TraesCS5D01G091100 chr7A 64513992 64514749 757 False 1003 1003 90.6460 4175 4929 1 chr7A.!!$F1 754
10 TraesCS5D01G091100 chr7A 85405685 85406396 711 False 922 922 89.9180 4199 4929 1 chr7A.!!$F2 730
11 TraesCS5D01G091100 chr2B 170852913 170853672 759 False 981 981 90.0650 4171 4929 1 chr2B.!!$F1 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.033642 GACCCACTTATAGCGGAGGC 59.966 60.0 0.00 0.00 40.37 4.70 F
371 372 0.040514 CGCATCGTCTTTGTGCCAAA 60.041 50.0 1.27 1.27 35.51 3.28 F
597 1345 0.110823 CCGGACGCGTTTTTCTTGAG 60.111 55.0 15.53 0.00 0.00 3.02 F
986 1734 0.243907 CGTTGCGGAAGGAAGAGAGA 59.756 55.0 2.96 0.00 43.95 3.10 F
2665 3456 0.179936 GCCTCCCACTCCTTCATGAG 59.820 60.0 0.00 0.00 38.37 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1044 1792 0.317103 CGTCCTCGTCGCCTATGAAG 60.317 60.000 0.00 0.00 0.00 3.02 R
2045 2830 1.199558 GCTCGTCCGATATCAGGGTAC 59.800 57.143 3.12 0.56 0.00 3.34 R
2354 3143 3.216147 GCTAAATGCGCAGAAGGAAAA 57.784 42.857 18.32 0.00 0.00 2.29 R
2712 3503 0.462375 ACAGGCACACAACGACTGTA 59.538 50.000 0.00 0.00 40.31 2.74 R
4537 5335 0.884704 GCACCCAAAGTTGCTCGAGA 60.885 55.000 18.75 0.00 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.572571 GGTCACGGTTGGTGCCCA 62.573 66.667 0.00 0.00 44.17 5.36
19 20 3.284449 GTCACGGTTGGTGCCCAC 61.284 66.667 0.00 0.00 46.56 4.61
40 41 2.347697 CGAGAACGGTGTCATCAAGA 57.652 50.000 0.00 0.00 35.72 3.02
41 42 2.881074 CGAGAACGGTGTCATCAAGAT 58.119 47.619 0.00 0.00 35.72 2.40
42 43 2.854777 CGAGAACGGTGTCATCAAGATC 59.145 50.000 0.00 0.00 35.72 2.75
43 44 3.673323 CGAGAACGGTGTCATCAAGATCA 60.673 47.826 0.00 0.00 35.72 2.92
44 45 4.437239 GAGAACGGTGTCATCAAGATCAT 58.563 43.478 0.00 0.00 0.00 2.45
45 46 4.437239 AGAACGGTGTCATCAAGATCATC 58.563 43.478 0.00 0.00 0.00 2.92
46 47 3.893326 ACGGTGTCATCAAGATCATCA 57.107 42.857 0.00 0.00 0.00 3.07
47 48 3.525537 ACGGTGTCATCAAGATCATCAC 58.474 45.455 0.00 0.00 0.00 3.06
48 49 2.868583 CGGTGTCATCAAGATCATCACC 59.131 50.000 13.27 13.27 39.97 4.02
49 50 2.868583 GGTGTCATCAAGATCATCACCG 59.131 50.000 0.00 0.00 35.36 4.94
50 51 2.868583 GTGTCATCAAGATCATCACCGG 59.131 50.000 0.00 0.00 0.00 5.28
51 52 2.501316 TGTCATCAAGATCATCACCGGT 59.499 45.455 0.00 0.00 0.00 5.28
52 53 2.868583 GTCATCAAGATCATCACCGGTG 59.131 50.000 29.26 29.26 0.00 4.94
53 54 2.158914 TCATCAAGATCATCACCGGTGG 60.159 50.000 33.40 19.06 0.00 4.61
54 55 1.275666 TCAAGATCATCACCGGTGGT 58.724 50.000 33.40 26.18 35.62 4.16
63 64 4.284550 ACCGGTGGTGCCAGCAAT 62.285 61.111 6.12 4.68 43.82 3.56
64 65 2.990967 CCGGTGGTGCCAGCAATT 60.991 61.111 18.80 0.00 43.82 2.32
65 66 2.573083 CCGGTGGTGCCAGCAATTT 61.573 57.895 18.80 0.00 43.82 1.82
66 67 1.080569 CGGTGGTGCCAGCAATTTC 60.081 57.895 18.80 0.00 43.82 2.17
67 68 1.804396 CGGTGGTGCCAGCAATTTCA 61.804 55.000 18.80 0.00 43.82 2.69
68 69 0.392336 GGTGGTGCCAGCAATTTCAA 59.608 50.000 14.75 0.00 43.20 2.69
69 70 1.002315 GGTGGTGCCAGCAATTTCAAT 59.998 47.619 14.75 0.00 43.20 2.57
70 71 2.070783 GTGGTGCCAGCAATTTCAATG 58.929 47.619 0.00 0.00 0.00 2.82
71 72 1.969208 TGGTGCCAGCAATTTCAATGA 59.031 42.857 0.00 0.00 0.00 2.57
72 73 2.568062 TGGTGCCAGCAATTTCAATGAT 59.432 40.909 0.00 0.00 0.00 2.45
73 74 3.768215 TGGTGCCAGCAATTTCAATGATA 59.232 39.130 0.00 0.00 0.00 2.15
74 75 4.222366 TGGTGCCAGCAATTTCAATGATAA 59.778 37.500 0.00 0.00 0.00 1.75
75 76 5.104859 TGGTGCCAGCAATTTCAATGATAAT 60.105 36.000 0.00 0.00 0.00 1.28
76 77 5.464389 GGTGCCAGCAATTTCAATGATAATC 59.536 40.000 0.00 0.00 0.00 1.75
77 78 5.174398 GTGCCAGCAATTTCAATGATAATCG 59.826 40.000 0.00 0.00 0.00 3.34
78 79 4.149396 GCCAGCAATTTCAATGATAATCGC 59.851 41.667 0.00 0.00 0.00 4.58
79 80 5.283294 CCAGCAATTTCAATGATAATCGCA 58.717 37.500 4.73 0.00 0.00 5.10
80 81 5.749588 CCAGCAATTTCAATGATAATCGCAA 59.250 36.000 4.73 0.00 0.00 4.85
81 82 6.422701 CCAGCAATTTCAATGATAATCGCAAT 59.577 34.615 4.73 0.00 0.00 3.56
82 83 7.280769 CAGCAATTTCAATGATAATCGCAATG 58.719 34.615 4.73 0.00 0.00 2.82
83 84 6.422701 AGCAATTTCAATGATAATCGCAATGG 59.577 34.615 4.73 0.00 0.00 3.16
84 85 6.347079 GCAATTTCAATGATAATCGCAATGGG 60.347 38.462 0.00 0.00 0.00 4.00
85 86 4.852134 TTCAATGATAATCGCAATGGGG 57.148 40.909 0.00 0.00 0.00 4.96
86 87 2.557924 TCAATGATAATCGCAATGGGGC 59.442 45.455 0.00 0.00 0.00 5.80
108 109 1.133253 CAGCGTTGCATGTTCCTCG 59.867 57.895 0.00 0.00 0.00 4.63
109 110 1.005037 AGCGTTGCATGTTCCTCGA 60.005 52.632 0.00 0.00 0.00 4.04
110 111 0.602638 AGCGTTGCATGTTCCTCGAA 60.603 50.000 0.00 0.00 0.00 3.71
111 112 0.447801 GCGTTGCATGTTCCTCGAAT 59.552 50.000 0.00 0.00 0.00 3.34
112 113 1.791555 GCGTTGCATGTTCCTCGAATG 60.792 52.381 0.00 0.00 0.00 2.67
113 114 1.791555 CGTTGCATGTTCCTCGAATGC 60.792 52.381 11.26 11.26 45.51 3.56
114 115 0.810648 TTGCATGTTCCTCGAATGCC 59.189 50.000 14.65 0.60 44.86 4.40
115 116 0.035152 TGCATGTTCCTCGAATGCCT 60.035 50.000 14.65 0.00 44.86 4.75
116 117 1.098050 GCATGTTCCTCGAATGCCTT 58.902 50.000 7.63 0.00 40.65 4.35
117 118 1.064654 GCATGTTCCTCGAATGCCTTC 59.935 52.381 7.63 0.00 40.65 3.46
118 119 1.672881 CATGTTCCTCGAATGCCTTCC 59.327 52.381 0.00 0.00 0.00 3.46
119 120 0.984230 TGTTCCTCGAATGCCTTCCT 59.016 50.000 0.00 0.00 0.00 3.36
120 121 1.339055 TGTTCCTCGAATGCCTTCCTG 60.339 52.381 0.00 0.00 0.00 3.86
121 122 0.253044 TTCCTCGAATGCCTTCCTGG 59.747 55.000 0.00 0.00 39.35 4.45
122 123 1.153086 CCTCGAATGCCTTCCTGGG 60.153 63.158 0.00 0.00 36.00 4.45
123 124 1.604378 CTCGAATGCCTTCCTGGGT 59.396 57.895 0.00 0.00 36.00 4.51
124 125 0.745845 CTCGAATGCCTTCCTGGGTG 60.746 60.000 0.00 0.00 36.00 4.61
125 126 2.409870 CGAATGCCTTCCTGGGTGC 61.410 63.158 0.00 0.00 36.00 5.01
126 127 1.000396 GAATGCCTTCCTGGGTGCT 60.000 57.895 0.00 0.00 36.00 4.40
127 128 0.613012 GAATGCCTTCCTGGGTGCTT 60.613 55.000 0.00 0.00 36.00 3.91
128 129 0.901580 AATGCCTTCCTGGGTGCTTG 60.902 55.000 0.00 0.00 36.00 4.01
129 130 2.677875 GCCTTCCTGGGTGCTTGG 60.678 66.667 0.00 0.00 36.00 3.61
130 131 2.846532 CCTTCCTGGGTGCTTGGT 59.153 61.111 0.00 0.00 0.00 3.67
131 132 1.604593 CCTTCCTGGGTGCTTGGTG 60.605 63.158 0.00 0.00 0.00 4.17
132 133 2.203480 TTCCTGGGTGCTTGGTGC 60.203 61.111 0.00 0.00 43.25 5.01
141 142 3.590824 GCTTGGTGCAAGGCGTAT 58.409 55.556 0.00 0.00 41.31 3.06
142 143 2.775351 GCTTGGTGCAAGGCGTATA 58.225 52.632 0.00 0.00 41.31 1.47
143 144 1.308998 GCTTGGTGCAAGGCGTATAT 58.691 50.000 0.00 0.00 41.31 0.86
144 145 1.676006 GCTTGGTGCAAGGCGTATATT 59.324 47.619 0.00 0.00 41.31 1.28
145 146 2.541588 GCTTGGTGCAAGGCGTATATTG 60.542 50.000 0.00 0.00 41.31 1.90
146 147 1.674359 TGGTGCAAGGCGTATATTGG 58.326 50.000 0.00 0.00 0.00 3.16
147 148 1.065053 TGGTGCAAGGCGTATATTGGT 60.065 47.619 0.00 0.00 0.00 3.67
148 149 2.170817 TGGTGCAAGGCGTATATTGGTA 59.829 45.455 0.00 0.00 0.00 3.25
149 150 3.181449 TGGTGCAAGGCGTATATTGGTAT 60.181 43.478 0.00 0.00 0.00 2.73
150 151 4.040584 TGGTGCAAGGCGTATATTGGTATA 59.959 41.667 0.00 0.00 0.00 1.47
151 152 5.183228 GGTGCAAGGCGTATATTGGTATAT 58.817 41.667 0.00 0.00 0.00 0.86
152 153 5.646360 GGTGCAAGGCGTATATTGGTATATT 59.354 40.000 0.00 0.00 0.00 1.28
153 154 6.403200 GGTGCAAGGCGTATATTGGTATATTG 60.403 42.308 0.00 0.00 0.00 1.90
154 155 5.645929 TGCAAGGCGTATATTGGTATATTGG 59.354 40.000 0.00 0.00 0.00 3.16
155 156 5.878116 GCAAGGCGTATATTGGTATATTGGA 59.122 40.000 0.00 0.00 0.00 3.53
156 157 6.183360 GCAAGGCGTATATTGGTATATTGGAC 60.183 42.308 0.00 0.00 0.00 4.02
157 158 5.985911 AGGCGTATATTGGTATATTGGACC 58.014 41.667 0.00 0.00 37.49 4.46
158 159 5.104652 AGGCGTATATTGGTATATTGGACCC 60.105 44.000 0.00 0.00 35.99 4.46
159 160 5.338544 GGCGTATATTGGTATATTGGACCCA 60.339 44.000 0.00 0.00 35.99 4.51
160 161 5.583457 GCGTATATTGGTATATTGGACCCAC 59.417 44.000 0.00 0.00 35.99 4.61
161 162 6.575649 GCGTATATTGGTATATTGGACCCACT 60.576 42.308 0.00 0.00 35.99 4.00
162 163 7.391620 CGTATATTGGTATATTGGACCCACTT 58.608 38.462 0.00 0.00 35.99 3.16
163 164 8.533657 CGTATATTGGTATATTGGACCCACTTA 58.466 37.037 0.00 0.00 35.99 2.24
167 168 6.368779 TGGTATATTGGACCCACTTATAGC 57.631 41.667 14.40 14.40 35.99 2.97
168 169 5.046878 TGGTATATTGGACCCACTTATAGCG 60.047 44.000 15.35 0.00 35.99 4.26
169 170 2.930826 ATTGGACCCACTTATAGCGG 57.069 50.000 0.00 0.00 0.00 5.52
170 171 1.868713 TTGGACCCACTTATAGCGGA 58.131 50.000 0.00 0.00 0.00 5.54
171 172 1.410004 TGGACCCACTTATAGCGGAG 58.590 55.000 0.00 0.00 0.00 4.63
172 173 0.680061 GGACCCACTTATAGCGGAGG 59.320 60.000 0.00 0.00 0.00 4.30
173 174 0.033642 GACCCACTTATAGCGGAGGC 59.966 60.000 0.00 0.00 40.37 4.70
174 175 1.006102 CCCACTTATAGCGGAGGCG 60.006 63.158 0.00 0.00 46.35 5.52
175 176 1.740285 CCACTTATAGCGGAGGCGT 59.260 57.895 0.00 0.00 46.35 5.68
176 177 0.104304 CCACTTATAGCGGAGGCGTT 59.896 55.000 0.00 0.00 46.35 4.84
177 178 1.472728 CCACTTATAGCGGAGGCGTTT 60.473 52.381 0.00 0.00 46.35 3.60
178 179 2.277084 CACTTATAGCGGAGGCGTTTT 58.723 47.619 0.00 0.00 46.35 2.43
179 180 2.284417 CACTTATAGCGGAGGCGTTTTC 59.716 50.000 0.00 0.00 46.35 2.29
180 181 2.167900 ACTTATAGCGGAGGCGTTTTCT 59.832 45.455 0.00 0.00 46.35 2.52
181 182 2.503920 TATAGCGGAGGCGTTTTCTC 57.496 50.000 0.00 0.00 46.35 2.87
182 183 0.179081 ATAGCGGAGGCGTTTTCTCC 60.179 55.000 0.00 0.00 46.35 3.71
189 190 3.073446 GCGTTTTCTCCGCGAGAG 58.927 61.111 8.23 13.20 39.98 3.20
190 191 2.445438 GCGTTTTCTCCGCGAGAGG 61.445 63.158 19.88 8.41 43.44 3.69
191 192 1.805945 CGTTTTCTCCGCGAGAGGG 60.806 63.158 19.88 0.00 43.44 4.30
192 193 1.292541 GTTTTCTCCGCGAGAGGGT 59.707 57.895 19.88 0.00 43.44 4.34
193 194 1.014564 GTTTTCTCCGCGAGAGGGTG 61.015 60.000 19.88 0.74 43.44 4.61
194 195 1.469335 TTTTCTCCGCGAGAGGGTGT 61.469 55.000 19.88 0.00 43.44 4.16
195 196 2.154798 TTTCTCCGCGAGAGGGTGTG 62.155 60.000 19.88 0.00 43.44 3.82
196 197 4.803426 CTCCGCGAGAGGGTGTGC 62.803 72.222 8.23 0.00 43.37 4.57
198 199 4.457496 CCGCGAGAGGGTGTGCAT 62.457 66.667 8.23 0.00 43.37 3.96
199 200 2.434884 CGCGAGAGGGTGTGCATT 60.435 61.111 0.00 0.00 39.50 3.56
200 201 2.034879 CGCGAGAGGGTGTGCATTT 61.035 57.895 0.00 0.00 39.50 2.32
201 202 1.577328 CGCGAGAGGGTGTGCATTTT 61.577 55.000 0.00 0.00 39.50 1.82
202 203 0.109597 GCGAGAGGGTGTGCATTTTG 60.110 55.000 0.00 0.00 0.00 2.44
203 204 0.109597 CGAGAGGGTGTGCATTTTGC 60.110 55.000 0.00 0.00 45.29 3.68
218 219 6.506464 GCATTTTGCAAATCTACATGCTAG 57.494 37.500 27.02 5.44 44.26 3.42
219 220 6.038356 GCATTTTGCAAATCTACATGCTAGT 58.962 36.000 27.02 0.00 44.26 2.57
220 221 6.020121 GCATTTTGCAAATCTACATGCTAGTG 60.020 38.462 27.02 7.67 44.26 2.74
221 222 5.565592 TTTGCAAATCTACATGCTAGTGG 57.434 39.130 8.05 0.00 42.97 4.00
222 223 2.945008 TGCAAATCTACATGCTAGTGGC 59.055 45.455 0.00 0.00 42.97 5.01
223 224 3.209410 GCAAATCTACATGCTAGTGGCT 58.791 45.455 0.00 0.00 42.39 4.75
224 225 4.141733 TGCAAATCTACATGCTAGTGGCTA 60.142 41.667 0.00 0.00 42.97 3.93
225 226 4.999950 GCAAATCTACATGCTAGTGGCTAT 59.000 41.667 0.00 0.00 42.39 2.97
226 227 5.471456 GCAAATCTACATGCTAGTGGCTATT 59.529 40.000 0.00 0.00 42.39 1.73
227 228 6.567321 GCAAATCTACATGCTAGTGGCTATTG 60.567 42.308 0.00 0.00 42.39 1.90
228 229 4.607293 TCTACATGCTAGTGGCTATTGG 57.393 45.455 0.00 0.00 42.39 3.16
229 230 1.972872 ACATGCTAGTGGCTATTGGC 58.027 50.000 0.00 0.00 42.39 4.52
230 231 1.212688 ACATGCTAGTGGCTATTGGCA 59.787 47.619 6.04 6.04 46.87 4.92
238 239 2.732844 TGGCTATTGGCATGTGATGA 57.267 45.000 0.00 0.00 44.10 2.92
239 240 3.232720 TGGCTATTGGCATGTGATGAT 57.767 42.857 0.00 0.00 44.10 2.45
240 241 2.888414 TGGCTATTGGCATGTGATGATG 59.112 45.455 0.00 0.00 44.10 3.07
241 242 3.151554 GGCTATTGGCATGTGATGATGA 58.848 45.455 0.00 0.00 44.01 2.92
242 243 3.570975 GGCTATTGGCATGTGATGATGAA 59.429 43.478 0.00 0.00 44.01 2.57
243 244 4.321008 GGCTATTGGCATGTGATGATGAAG 60.321 45.833 0.00 0.00 44.01 3.02
244 245 4.321008 GCTATTGGCATGTGATGATGAAGG 60.321 45.833 0.00 0.00 41.35 3.46
245 246 2.812836 TGGCATGTGATGATGAAGGT 57.187 45.000 0.00 0.00 0.00 3.50
246 247 3.929955 TGGCATGTGATGATGAAGGTA 57.070 42.857 0.00 0.00 0.00 3.08
247 248 3.812262 TGGCATGTGATGATGAAGGTAG 58.188 45.455 0.00 0.00 0.00 3.18
248 249 3.455543 TGGCATGTGATGATGAAGGTAGA 59.544 43.478 0.00 0.00 0.00 2.59
249 250 3.812053 GGCATGTGATGATGAAGGTAGAC 59.188 47.826 0.00 0.00 0.00 2.59
250 251 3.812053 GCATGTGATGATGAAGGTAGACC 59.188 47.826 0.00 0.00 0.00 3.85
251 252 3.801114 TGTGATGATGAAGGTAGACCG 57.199 47.619 0.00 0.00 42.08 4.79
252 253 2.159099 TGTGATGATGAAGGTAGACCGC 60.159 50.000 0.00 0.00 42.08 5.68
253 254 1.412710 TGATGATGAAGGTAGACCGCC 59.587 52.381 0.00 0.00 42.08 6.13
254 255 1.689273 GATGATGAAGGTAGACCGCCT 59.311 52.381 0.00 0.00 42.08 5.52
255 256 0.824109 TGATGAAGGTAGACCGCCTG 59.176 55.000 0.00 0.00 42.08 4.85
256 257 1.112113 GATGAAGGTAGACCGCCTGA 58.888 55.000 0.00 0.00 42.08 3.86
257 258 1.480954 GATGAAGGTAGACCGCCTGAA 59.519 52.381 0.00 0.00 42.08 3.02
258 259 1.568504 TGAAGGTAGACCGCCTGAAT 58.431 50.000 0.00 0.00 42.08 2.57
259 260 2.742348 TGAAGGTAGACCGCCTGAATA 58.258 47.619 0.00 0.00 42.08 1.75
260 261 3.305720 TGAAGGTAGACCGCCTGAATAT 58.694 45.455 0.00 0.00 42.08 1.28
261 262 3.069586 TGAAGGTAGACCGCCTGAATATG 59.930 47.826 0.00 0.00 42.08 1.78
262 263 1.971357 AGGTAGACCGCCTGAATATGG 59.029 52.381 0.00 0.00 42.08 2.74
263 264 1.692519 GGTAGACCGCCTGAATATGGT 59.307 52.381 0.00 0.00 37.44 3.55
264 265 2.895404 GGTAGACCGCCTGAATATGGTA 59.105 50.000 0.00 0.00 34.12 3.25
265 266 3.305881 GGTAGACCGCCTGAATATGGTAC 60.306 52.174 0.00 0.00 34.12 3.34
266 267 7.925603 AGGTAGACCGCCTGAATATGGTACA 62.926 48.000 0.00 0.00 42.67 2.90
282 283 4.655963 TGGTACAACTCTAGTAACCTCGT 58.344 43.478 0.00 0.00 31.92 4.18
283 284 4.697352 TGGTACAACTCTAGTAACCTCGTC 59.303 45.833 0.00 0.00 31.92 4.20
284 285 4.697352 GGTACAACTCTAGTAACCTCGTCA 59.303 45.833 0.00 0.00 0.00 4.35
285 286 4.762956 ACAACTCTAGTAACCTCGTCAC 57.237 45.455 0.00 0.00 0.00 3.67
286 287 4.139786 ACAACTCTAGTAACCTCGTCACA 58.860 43.478 0.00 0.00 0.00 3.58
287 288 4.581824 ACAACTCTAGTAACCTCGTCACAA 59.418 41.667 0.00 0.00 0.00 3.33
288 289 5.243283 ACAACTCTAGTAACCTCGTCACAAT 59.757 40.000 0.00 0.00 0.00 2.71
289 290 5.979288 ACTCTAGTAACCTCGTCACAATT 57.021 39.130 0.00 0.00 0.00 2.32
290 291 5.952033 ACTCTAGTAACCTCGTCACAATTC 58.048 41.667 0.00 0.00 0.00 2.17
291 292 5.711036 ACTCTAGTAACCTCGTCACAATTCT 59.289 40.000 0.00 0.00 0.00 2.40
292 293 6.208994 ACTCTAGTAACCTCGTCACAATTCTT 59.791 38.462 0.00 0.00 0.00 2.52
293 294 6.387465 TCTAGTAACCTCGTCACAATTCTTG 58.613 40.000 0.00 0.00 0.00 3.02
294 295 4.957296 AGTAACCTCGTCACAATTCTTGT 58.043 39.130 0.00 0.00 46.75 3.16
295 296 5.365619 AGTAACCTCGTCACAATTCTTGTT 58.634 37.500 0.00 0.00 43.23 2.83
296 297 4.813296 AACCTCGTCACAATTCTTGTTC 57.187 40.909 0.00 0.00 43.23 3.18
297 298 2.800544 ACCTCGTCACAATTCTTGTTCG 59.199 45.455 7.55 7.55 43.23 3.95
298 299 2.157668 CCTCGTCACAATTCTTGTTCGG 59.842 50.000 11.56 5.77 43.23 4.30
299 300 2.800544 CTCGTCACAATTCTTGTTCGGT 59.199 45.455 11.56 0.00 43.23 4.69
300 301 3.199677 TCGTCACAATTCTTGTTCGGTT 58.800 40.909 11.56 0.00 43.23 4.44
301 302 3.001838 TCGTCACAATTCTTGTTCGGTTG 59.998 43.478 11.56 0.00 43.23 3.77
302 303 3.242608 CGTCACAATTCTTGTTCGGTTGT 60.243 43.478 0.00 0.00 43.23 3.32
303 304 4.035017 GTCACAATTCTTGTTCGGTTGTG 58.965 43.478 9.55 9.55 46.63 3.33
304 305 3.066064 TCACAATTCTTGTTCGGTTGTGG 59.934 43.478 14.28 0.23 45.79 4.17
305 306 2.223711 ACAATTCTTGTTCGGTTGTGGC 60.224 45.455 0.00 0.00 42.22 5.01
306 307 1.981256 ATTCTTGTTCGGTTGTGGCT 58.019 45.000 0.00 0.00 0.00 4.75
307 308 1.305201 TTCTTGTTCGGTTGTGGCTC 58.695 50.000 0.00 0.00 0.00 4.70
308 309 0.534203 TCTTGTTCGGTTGTGGCTCC 60.534 55.000 0.00 0.00 0.00 4.70
309 310 0.535102 CTTGTTCGGTTGTGGCTCCT 60.535 55.000 0.00 0.00 0.00 3.69
310 311 0.817634 TTGTTCGGTTGTGGCTCCTG 60.818 55.000 0.00 0.00 0.00 3.86
311 312 1.227853 GTTCGGTTGTGGCTCCTGT 60.228 57.895 0.00 0.00 0.00 4.00
312 313 1.070786 TTCGGTTGTGGCTCCTGTC 59.929 57.895 0.00 0.00 0.00 3.51
313 314 1.407656 TTCGGTTGTGGCTCCTGTCT 61.408 55.000 0.00 0.00 0.00 3.41
314 315 1.669115 CGGTTGTGGCTCCTGTCTG 60.669 63.158 0.00 0.00 0.00 3.51
328 329 4.454678 TCCTGTCTGGATATTCAACATGC 58.545 43.478 0.00 0.00 40.56 4.06
339 340 9.134055 TGGATATTCAACATGCAATTCTATCAA 57.866 29.630 0.00 0.00 0.00 2.57
357 358 9.856488 TTCTATCAACTAATTATCCTACGCATC 57.144 33.333 0.00 0.00 0.00 3.91
358 359 8.182227 TCTATCAACTAATTATCCTACGCATCG 58.818 37.037 0.00 0.00 0.00 3.84
364 365 5.907197 AATTATCCTACGCATCGTCTTTG 57.093 39.130 0.00 0.00 41.54 2.77
366 367 1.990799 TCCTACGCATCGTCTTTGTG 58.009 50.000 0.00 0.00 41.54 3.33
371 372 0.040514 CGCATCGTCTTTGTGCCAAA 60.041 50.000 1.27 1.27 35.51 3.28
383 384 0.249573 GTGCCAAATGTGCTTGCACT 60.250 50.000 23.53 9.06 33.91 4.40
389 390 3.622163 CCAAATGTGCTTGCACTTTGAAA 59.378 39.130 29.46 14.11 31.35 2.69
395 396 3.482110 GTGCTTGCACTTTGAAAGTAACG 59.518 43.478 17.36 0.00 40.46 3.18
403 404 5.277634 GCACTTTGAAAGTAACGGAAAGCTA 60.278 40.000 10.63 0.00 40.46 3.32
410 411 2.688958 AGTAACGGAAAGCTAGCTCGAT 59.311 45.455 25.68 18.31 0.00 3.59
418 419 1.604604 AGCTAGCTCGATGAGACTCC 58.395 55.000 12.68 0.00 0.00 3.85
457 1175 3.986277 GCTGATTGCCTTGGGAATAATG 58.014 45.455 6.38 2.17 35.15 1.90
459 1177 2.699846 TGATTGCCTTGGGAATAATGGC 59.300 45.455 6.38 0.00 43.49 4.40
474 1192 9.225436 GGGAATAATGGCTTTGTTTGAATAAAA 57.775 29.630 0.00 0.00 0.00 1.52
525 1273 3.680937 GGACGTATCTGTAGAGATCTCGG 59.319 52.174 16.97 8.96 39.76 4.63
537 1285 1.335182 AGATCTCGGTCAGCGTACATG 59.665 52.381 0.00 0.00 0.00 3.21
557 1305 1.870993 GCGATTTATACGAAGCCGGGT 60.871 52.381 0.00 0.00 40.78 5.28
597 1345 0.110823 CCGGACGCGTTTTTCTTGAG 60.111 55.000 15.53 0.00 0.00 3.02
610 1358 7.519002 CGTTTTTCTTGAGAGATTTTCCGTAT 58.481 34.615 0.00 0.00 0.00 3.06
700 1448 1.126113 CAACTGATCCAACACGTACGC 59.874 52.381 16.72 0.00 0.00 4.42
839 1587 3.181524 CGCCGCGGATTTTATAAGGTATG 60.182 47.826 33.48 0.00 0.00 2.39
858 1606 6.433093 AGGTATGTAGTTTGTTTCCACAATCC 59.567 38.462 0.00 0.00 42.66 3.01
897 1645 1.134753 AGTTGTGCCATTGTGTGTGTG 59.865 47.619 0.00 0.00 0.00 3.82
901 1649 2.217750 GTGCCATTGTGTGTGTGTCTA 58.782 47.619 0.00 0.00 0.00 2.59
942 1690 1.730064 TCGATCGCAAGTAGGTTTTGC 59.270 47.619 11.09 0.10 45.64 3.68
955 1703 0.808755 GTTTTGCGGGGATCAATCGT 59.191 50.000 0.00 0.00 0.00 3.73
964 1712 3.179830 GGGGATCAATCGTATCGAATCG 58.820 50.000 0.00 0.00 39.99 3.34
967 1715 3.852536 GGATCAATCGTATCGAATCGGTC 59.147 47.826 1.76 0.00 39.99 4.79
978 1726 1.693083 GAATCGGTCGTTGCGGAAGG 61.693 60.000 2.65 2.65 0.00 3.46
986 1734 0.243907 CGTTGCGGAAGGAAGAGAGA 59.756 55.000 2.96 0.00 43.95 3.10
987 1735 1.734047 CGTTGCGGAAGGAAGAGAGAG 60.734 57.143 2.96 0.00 43.95 3.20
1112 1860 4.436998 GCCACCCTCGTCGGACTG 62.437 72.222 6.57 0.31 33.16 3.51
1113 1861 4.436998 CCACCCTCGTCGGACTGC 62.437 72.222 6.57 0.00 33.16 4.40
1340 2096 3.016736 CTGGTTCCACGCCTGATTAATT 58.983 45.455 0.00 0.00 0.00 1.40
1341 2097 4.196193 CTGGTTCCACGCCTGATTAATTA 58.804 43.478 0.00 0.00 0.00 1.40
1342 2098 4.590918 TGGTTCCACGCCTGATTAATTAA 58.409 39.130 0.00 0.00 0.00 1.40
1818 2597 7.887996 TGTTTTTCCATAGTTCAAATCATGC 57.112 32.000 0.00 0.00 0.00 4.06
1919 2704 1.234821 GCGGTGTTGGAATTCTCACA 58.765 50.000 20.81 14.69 33.17 3.58
2000 2785 1.369091 CCTGTTCATGCTACACCGGC 61.369 60.000 0.00 0.00 0.00 6.13
2033 2818 1.280886 GATGCATAGACAGCTCGCCG 61.281 60.000 0.00 0.00 0.00 6.46
2045 2830 2.505337 TCGCCGACCATCGAAACG 60.505 61.111 0.00 1.31 43.74 3.60
2136 2921 5.724854 ACCTACTGTCCACCTATTTGTACAT 59.275 40.000 0.00 0.00 0.00 2.29
2204 2989 5.344743 TGCAGGTTGTCCTTTATCTAGAG 57.655 43.478 0.00 0.00 43.07 2.43
2265 3050 5.330271 TGTGTTTTGAAAACGTTTGGTTG 57.670 34.783 15.46 0.00 39.30 3.77
2291 3080 4.825422 CATATCTGATGTAACATCCCGCT 58.175 43.478 0.00 0.00 0.00 5.52
2292 3081 3.845781 ATCTGATGTAACATCCCGCTT 57.154 42.857 0.00 0.00 0.00 4.68
2293 3082 3.627395 TCTGATGTAACATCCCGCTTT 57.373 42.857 0.00 0.00 0.00 3.51
2411 3200 7.963532 TCTACTTGAACTCTCATAACCTGTTT 58.036 34.615 0.00 0.00 0.00 2.83
2490 3279 3.069443 CCTCTCCTATCTTTCTGGTGAGC 59.931 52.174 0.00 0.00 39.06 4.26
2601 3392 5.882557 TCTCCCAGTTCAATCTTTTCATAGC 59.117 40.000 0.00 0.00 0.00 2.97
2602 3393 5.569355 TCCCAGTTCAATCTTTTCATAGCA 58.431 37.500 0.00 0.00 0.00 3.49
2603 3394 6.009589 TCCCAGTTCAATCTTTTCATAGCAA 58.990 36.000 0.00 0.00 0.00 3.91
2665 3456 0.179936 GCCTCCCACTCCTTCATGAG 59.820 60.000 0.00 0.00 38.37 2.90
2712 3503 1.852067 GAGGCGTGGTTGCAACGATT 61.852 55.000 22.67 6.98 43.68 3.34
2803 3594 0.250770 GAACCTGACCCACCTTCCAC 60.251 60.000 0.00 0.00 0.00 4.02
2902 3693 0.875059 GCAGTTCCCTTTTGTCCTCG 59.125 55.000 0.00 0.00 0.00 4.63
2946 3737 4.466567 TGACAAATGAAACGCTACAGTG 57.533 40.909 0.00 0.00 0.00 3.66
3018 3809 1.942657 ACATGCGCTATTGTCCACATC 59.057 47.619 9.73 0.00 0.00 3.06
3434 4227 4.628074 TGGTACTTGTCACTTGCTTCTAC 58.372 43.478 0.00 0.00 0.00 2.59
3643 4437 7.648142 TGCAATATTATTTTCCCTGACGATTC 58.352 34.615 0.00 0.00 0.00 2.52
3704 4498 1.144936 CCTCTCCATCAAGCGGGAC 59.855 63.158 0.00 0.00 0.00 4.46
3712 4506 2.431057 CCATCAAGCGGGACTTAGTACT 59.569 50.000 0.00 0.00 36.04 2.73
3762 4556 0.385473 CGCAGGCTAAAACACCAACG 60.385 55.000 0.00 0.00 0.00 4.10
3951 4745 0.321919 GGAAGTGCCAGAGTGCATCA 60.322 55.000 0.00 0.00 44.30 3.07
4034 4828 4.990426 GCAGTTTTCCATTTGTTGTATGCT 59.010 37.500 0.00 0.00 0.00 3.79
4042 4836 4.858692 CCATTTGTTGTATGCTTTCCTTCG 59.141 41.667 0.00 0.00 0.00 3.79
4083 4877 7.166142 CGCAAGAAAGGTTTTCGTATTTTTACA 59.834 33.333 0.00 0.00 43.02 2.41
4085 4879 9.724839 CAAGAAAGGTTTTCGTATTTTTACAGA 57.275 29.630 0.00 0.00 0.00 3.41
4107 4901 8.500773 ACAGAAATACGGTACTTGTTGTATTTG 58.499 33.333 12.37 4.66 43.67 2.32
4119 4913 1.745232 TGTATTTGGCCGTCCATGAC 58.255 50.000 0.00 0.00 43.05 3.06
4156 4950 7.288560 TCAGAATAGACCGAGGATTTAGTAGT 58.711 38.462 0.00 0.00 0.00 2.73
4359 5155 2.604174 CGTTTCCGCGTGCCTTCTT 61.604 57.895 4.92 0.00 0.00 2.52
4565 5363 3.486383 CAACTTTGGGTGCTAAGGAAGA 58.514 45.455 0.00 0.00 0.00 2.87
4735 5534 4.386867 TCATAACTAGTTTCGCCTCCAG 57.613 45.455 14.49 0.00 0.00 3.86
4749 5548 4.652421 TCGCCTCCAGGTTTATAGTATTGT 59.348 41.667 0.00 0.00 37.57 2.71
4799 5598 8.674607 GGCTTACATTTATACTAAGCTTGTTGT 58.325 33.333 9.86 7.94 41.39 3.32
4880 5681 8.492673 TGGTAAGCAACTTAGTTTCATAGATG 57.507 34.615 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.347697 TCTTGATGACACCGTTCTCG 57.652 50.000 0.00 0.00 0.00 4.04
22 23 3.849911 TGATCTTGATGACACCGTTCTC 58.150 45.455 0.00 0.00 0.00 2.87
23 24 3.961480 TGATCTTGATGACACCGTTCT 57.039 42.857 0.00 0.00 0.00 3.01
24 25 4.033358 GTGATGATCTTGATGACACCGTTC 59.967 45.833 0.00 0.00 0.00 3.95
25 26 3.935203 GTGATGATCTTGATGACACCGTT 59.065 43.478 0.00 0.00 0.00 4.44
26 27 3.525537 GTGATGATCTTGATGACACCGT 58.474 45.455 0.00 0.00 0.00 4.83
27 28 2.868583 GGTGATGATCTTGATGACACCG 59.131 50.000 0.00 0.00 37.24 4.94
28 29 2.868583 CGGTGATGATCTTGATGACACC 59.131 50.000 0.00 0.00 41.61 4.16
29 30 2.868583 CCGGTGATGATCTTGATGACAC 59.131 50.000 0.00 0.00 0.00 3.67
30 31 2.501316 ACCGGTGATGATCTTGATGACA 59.499 45.455 6.12 0.00 0.00 3.58
31 32 2.868583 CACCGGTGATGATCTTGATGAC 59.131 50.000 31.31 0.00 0.00 3.06
32 33 2.158914 CCACCGGTGATGATCTTGATGA 60.159 50.000 36.07 0.00 0.00 2.92
33 34 2.216046 CCACCGGTGATGATCTTGATG 58.784 52.381 36.07 10.43 0.00 3.07
34 35 1.839994 ACCACCGGTGATGATCTTGAT 59.160 47.619 36.07 4.77 32.98 2.57
35 36 1.275666 ACCACCGGTGATGATCTTGA 58.724 50.000 36.07 0.00 32.98 3.02
36 37 3.861341 ACCACCGGTGATGATCTTG 57.139 52.632 36.07 18.20 32.98 3.02
48 49 1.080569 GAAATTGCTGGCACCACCG 60.081 57.895 0.00 0.00 43.94 4.94
49 50 0.392336 TTGAAATTGCTGGCACCACC 59.608 50.000 0.00 0.00 39.84 4.61
50 51 2.070783 CATTGAAATTGCTGGCACCAC 58.929 47.619 0.00 0.00 0.00 4.16
51 52 1.969208 TCATTGAAATTGCTGGCACCA 59.031 42.857 0.00 0.00 0.00 4.17
52 53 2.747396 TCATTGAAATTGCTGGCACC 57.253 45.000 0.00 0.00 0.00 5.01
53 54 5.174398 CGATTATCATTGAAATTGCTGGCAC 59.826 40.000 0.00 0.00 0.00 5.01
54 55 5.283294 CGATTATCATTGAAATTGCTGGCA 58.717 37.500 0.00 0.00 0.00 4.92
55 56 4.149396 GCGATTATCATTGAAATTGCTGGC 59.851 41.667 17.51 0.00 38.78 4.85
56 57 5.283294 TGCGATTATCATTGAAATTGCTGG 58.717 37.500 21.39 1.70 41.26 4.85
57 58 6.815672 TTGCGATTATCATTGAAATTGCTG 57.184 33.333 21.39 3.13 41.26 4.41
58 59 6.422701 CCATTGCGATTATCATTGAAATTGCT 59.577 34.615 21.39 9.89 41.26 3.91
59 60 6.347079 CCCATTGCGATTATCATTGAAATTGC 60.347 38.462 17.74 17.74 41.13 3.56
60 61 6.146510 CCCCATTGCGATTATCATTGAAATTG 59.853 38.462 0.00 0.00 0.00 2.32
61 62 6.225318 CCCCATTGCGATTATCATTGAAATT 58.775 36.000 0.00 0.00 0.00 1.82
62 63 5.786311 CCCCATTGCGATTATCATTGAAAT 58.214 37.500 0.00 0.00 0.00 2.17
63 64 4.501229 GCCCCATTGCGATTATCATTGAAA 60.501 41.667 0.00 0.00 0.00 2.69
64 65 3.005684 GCCCCATTGCGATTATCATTGAA 59.994 43.478 0.00 0.00 0.00 2.69
65 66 2.557924 GCCCCATTGCGATTATCATTGA 59.442 45.455 0.00 0.00 0.00 2.57
66 67 2.950433 GCCCCATTGCGATTATCATTG 58.050 47.619 0.00 0.00 0.00 2.82
90 91 1.133253 CGAGGAACATGCAACGCTG 59.867 57.895 0.00 0.00 0.00 5.18
91 92 0.602638 TTCGAGGAACATGCAACGCT 60.603 50.000 0.00 0.00 0.00 5.07
92 93 0.447801 ATTCGAGGAACATGCAACGC 59.552 50.000 0.00 0.00 0.00 4.84
93 94 1.791555 GCATTCGAGGAACATGCAACG 60.792 52.381 12.90 0.00 38.08 4.10
94 95 1.468054 GGCATTCGAGGAACATGCAAC 60.468 52.381 18.04 1.53 39.78 4.17
95 96 0.810648 GGCATTCGAGGAACATGCAA 59.189 50.000 18.04 0.00 39.78 4.08
96 97 0.035152 AGGCATTCGAGGAACATGCA 60.035 50.000 18.04 0.00 39.78 3.96
97 98 1.064654 GAAGGCATTCGAGGAACATGC 59.935 52.381 9.97 9.97 37.51 4.06
98 99 1.672881 GGAAGGCATTCGAGGAACATG 59.327 52.381 4.84 0.00 36.19 3.21
99 100 1.561542 AGGAAGGCATTCGAGGAACAT 59.438 47.619 4.84 0.00 36.19 2.71
100 101 0.984230 AGGAAGGCATTCGAGGAACA 59.016 50.000 4.84 0.00 36.19 3.18
101 102 1.373570 CAGGAAGGCATTCGAGGAAC 58.626 55.000 4.84 0.00 36.19 3.62
102 103 0.253044 CCAGGAAGGCATTCGAGGAA 59.747 55.000 13.29 0.00 36.19 3.36
103 104 1.626356 CCCAGGAAGGCATTCGAGGA 61.626 60.000 18.42 0.00 36.19 3.71
104 105 1.153086 CCCAGGAAGGCATTCGAGG 60.153 63.158 12.01 12.01 36.19 4.63
105 106 0.745845 CACCCAGGAAGGCATTCGAG 60.746 60.000 4.84 0.00 36.19 4.04
106 107 1.299648 CACCCAGGAAGGCATTCGA 59.700 57.895 4.84 0.00 36.19 3.71
107 108 2.409870 GCACCCAGGAAGGCATTCG 61.410 63.158 4.84 0.00 36.19 3.34
108 109 0.613012 AAGCACCCAGGAAGGCATTC 60.613 55.000 1.60 1.60 35.39 2.67
109 110 0.901580 CAAGCACCCAGGAAGGCATT 60.902 55.000 0.00 0.00 35.39 3.56
110 111 1.304713 CAAGCACCCAGGAAGGCAT 60.305 57.895 0.00 0.00 35.39 4.40
111 112 2.115910 CAAGCACCCAGGAAGGCA 59.884 61.111 0.00 0.00 35.39 4.75
112 113 2.677875 CCAAGCACCCAGGAAGGC 60.678 66.667 0.00 0.00 35.39 4.35
113 114 1.604593 CACCAAGCACCCAGGAAGG 60.605 63.158 0.00 0.00 37.03 3.46
114 115 2.270986 GCACCAAGCACCCAGGAAG 61.271 63.158 0.00 0.00 44.79 3.46
115 116 2.203480 GCACCAAGCACCCAGGAA 60.203 61.111 0.00 0.00 44.79 3.36
124 125 1.308998 ATATACGCCTTGCACCAAGC 58.691 50.000 0.00 0.00 39.85 4.01
125 126 2.033299 CCAATATACGCCTTGCACCAAG 59.967 50.000 0.00 0.00 40.75 3.61
126 127 2.020720 CCAATATACGCCTTGCACCAA 58.979 47.619 0.00 0.00 0.00 3.67
127 128 1.065053 ACCAATATACGCCTTGCACCA 60.065 47.619 0.00 0.00 0.00 4.17
128 129 1.675552 ACCAATATACGCCTTGCACC 58.324 50.000 0.00 0.00 0.00 5.01
129 130 6.403200 CCAATATACCAATATACGCCTTGCAC 60.403 42.308 0.00 0.00 0.00 4.57
130 131 5.645929 CCAATATACCAATATACGCCTTGCA 59.354 40.000 0.00 0.00 0.00 4.08
131 132 5.878116 TCCAATATACCAATATACGCCTTGC 59.122 40.000 0.00 0.00 0.00 4.01
132 133 6.315393 GGTCCAATATACCAATATACGCCTTG 59.685 42.308 0.00 0.00 36.96 3.61
133 134 6.412214 GGTCCAATATACCAATATACGCCTT 58.588 40.000 0.00 0.00 36.96 4.35
134 135 5.104652 GGGTCCAATATACCAATATACGCCT 60.105 44.000 0.00 0.00 38.87 5.52
135 136 5.121105 GGGTCCAATATACCAATATACGCC 58.879 45.833 0.00 0.00 38.87 5.68
136 137 5.583457 GTGGGTCCAATATACCAATATACGC 59.417 44.000 0.00 0.00 38.87 4.42
137 138 6.942976 AGTGGGTCCAATATACCAATATACG 58.057 40.000 0.00 0.00 38.87 3.06
141 142 8.545472 GCTATAAGTGGGTCCAATATACCAATA 58.455 37.037 0.00 0.00 38.87 1.90
142 143 7.402862 GCTATAAGTGGGTCCAATATACCAAT 58.597 38.462 0.00 0.00 38.87 3.16
143 144 6.519382 CGCTATAAGTGGGTCCAATATACCAA 60.519 42.308 0.00 0.00 38.87 3.67
144 145 5.046878 CGCTATAAGTGGGTCCAATATACCA 60.047 44.000 0.00 0.00 38.87 3.25
145 146 5.416947 CGCTATAAGTGGGTCCAATATACC 58.583 45.833 0.00 0.00 36.19 2.73
146 147 5.186409 TCCGCTATAAGTGGGTCCAATATAC 59.814 44.000 6.67 0.00 45.74 1.47
147 148 5.335261 TCCGCTATAAGTGGGTCCAATATA 58.665 41.667 6.67 0.00 45.74 0.86
148 149 4.164981 TCCGCTATAAGTGGGTCCAATAT 58.835 43.478 6.67 0.00 45.74 1.28
149 150 3.576982 CTCCGCTATAAGTGGGTCCAATA 59.423 47.826 6.67 0.00 45.74 1.90
150 151 2.368875 CTCCGCTATAAGTGGGTCCAAT 59.631 50.000 6.67 0.00 45.74 3.16
151 152 1.760613 CTCCGCTATAAGTGGGTCCAA 59.239 52.381 6.67 0.00 45.74 3.53
152 153 1.410004 CTCCGCTATAAGTGGGTCCA 58.590 55.000 6.67 0.00 45.74 4.02
153 154 0.680061 CCTCCGCTATAAGTGGGTCC 59.320 60.000 6.67 0.00 45.74 4.46
154 155 0.033642 GCCTCCGCTATAAGTGGGTC 59.966 60.000 6.67 0.00 45.74 4.46
155 156 1.745320 CGCCTCCGCTATAAGTGGGT 61.745 60.000 6.67 0.00 45.74 4.51
156 157 1.006102 CGCCTCCGCTATAAGTGGG 60.006 63.158 6.67 0.00 45.74 4.61
158 159 1.935933 AAACGCCTCCGCTATAAGTG 58.064 50.000 0.00 0.00 38.22 3.16
159 160 2.167900 AGAAAACGCCTCCGCTATAAGT 59.832 45.455 0.00 0.00 38.22 2.24
160 161 2.795470 GAGAAAACGCCTCCGCTATAAG 59.205 50.000 0.00 0.00 38.22 1.73
161 162 2.482490 GGAGAAAACGCCTCCGCTATAA 60.482 50.000 0.00 0.00 40.58 0.98
162 163 1.068127 GGAGAAAACGCCTCCGCTATA 59.932 52.381 0.00 0.00 40.58 1.31
163 164 0.179081 GGAGAAAACGCCTCCGCTAT 60.179 55.000 0.00 0.00 40.58 2.97
164 165 1.217244 GGAGAAAACGCCTCCGCTA 59.783 57.895 0.00 0.00 40.58 4.26
165 166 2.047179 GGAGAAAACGCCTCCGCT 60.047 61.111 0.00 0.00 40.58 5.52
173 174 1.805945 CCCTCTCGCGGAGAAAACG 60.806 63.158 21.43 8.01 44.45 3.60
174 175 1.014564 CACCCTCTCGCGGAGAAAAC 61.015 60.000 21.43 0.00 44.45 2.43
175 176 1.292223 CACCCTCTCGCGGAGAAAA 59.708 57.895 21.43 0.00 44.45 2.29
176 177 1.906824 ACACCCTCTCGCGGAGAAA 60.907 57.895 21.43 0.00 44.45 2.52
177 178 2.282958 ACACCCTCTCGCGGAGAA 60.283 61.111 21.43 0.00 44.45 2.87
178 179 3.062466 CACACCCTCTCGCGGAGA 61.062 66.667 21.43 14.79 44.45 3.71
179 180 4.803426 GCACACCCTCTCGCGGAG 62.803 72.222 6.13 11.96 41.51 4.63
181 182 3.958147 AATGCACACCCTCTCGCGG 62.958 63.158 6.13 0.00 0.00 6.46
182 183 1.577328 AAAATGCACACCCTCTCGCG 61.577 55.000 0.00 0.00 0.00 5.87
183 184 0.109597 CAAAATGCACACCCTCTCGC 60.110 55.000 0.00 0.00 0.00 5.03
184 185 0.109597 GCAAAATGCACACCCTCTCG 60.110 55.000 0.00 0.00 44.26 4.04
185 186 3.800628 GCAAAATGCACACCCTCTC 57.199 52.632 0.00 0.00 44.26 3.20
195 196 6.020121 CACTAGCATGTAGATTTGCAAAATGC 60.020 38.462 27.02 27.02 45.29 3.56
196 197 6.474427 CCACTAGCATGTAGATTTGCAAAATG 59.526 38.462 17.19 15.22 41.35 2.32
197 198 6.567050 CCACTAGCATGTAGATTTGCAAAAT 58.433 36.000 17.19 10.57 41.35 1.82
198 199 5.622007 GCCACTAGCATGTAGATTTGCAAAA 60.622 40.000 17.19 0.00 41.35 2.44
199 200 4.142403 GCCACTAGCATGTAGATTTGCAAA 60.142 41.667 15.44 15.44 41.35 3.68
200 201 3.378112 GCCACTAGCATGTAGATTTGCAA 59.622 43.478 0.00 0.00 41.35 4.08
201 202 2.945008 GCCACTAGCATGTAGATTTGCA 59.055 45.455 8.67 0.00 41.35 4.08
202 203 3.615849 GCCACTAGCATGTAGATTTGC 57.384 47.619 8.67 0.00 42.97 3.68
214 215 1.605710 CACATGCCAATAGCCACTAGC 59.394 52.381 0.00 0.00 42.71 3.42
215 216 3.198409 TCACATGCCAATAGCCACTAG 57.802 47.619 0.00 0.00 42.71 2.57
216 217 3.136260 TCATCACATGCCAATAGCCACTA 59.864 43.478 0.00 0.00 42.71 2.74
217 218 2.092267 TCATCACATGCCAATAGCCACT 60.092 45.455 0.00 0.00 42.71 4.00
218 219 2.300433 TCATCACATGCCAATAGCCAC 58.700 47.619 0.00 0.00 42.71 5.01
219 220 2.732844 TCATCACATGCCAATAGCCA 57.267 45.000 0.00 0.00 42.71 4.75
220 221 3.151554 TCATCATCACATGCCAATAGCC 58.848 45.455 0.00 0.00 42.71 3.93
221 222 4.321008 CCTTCATCATCACATGCCAATAGC 60.321 45.833 0.00 0.00 44.14 2.97
222 223 4.825634 ACCTTCATCATCACATGCCAATAG 59.174 41.667 0.00 0.00 0.00 1.73
223 224 4.795469 ACCTTCATCATCACATGCCAATA 58.205 39.130 0.00 0.00 0.00 1.90
224 225 3.638860 ACCTTCATCATCACATGCCAAT 58.361 40.909 0.00 0.00 0.00 3.16
225 226 3.090210 ACCTTCATCATCACATGCCAA 57.910 42.857 0.00 0.00 0.00 4.52
226 227 2.812836 ACCTTCATCATCACATGCCA 57.187 45.000 0.00 0.00 0.00 4.92
227 228 3.812053 GTCTACCTTCATCATCACATGCC 59.188 47.826 0.00 0.00 0.00 4.40
228 229 3.812053 GGTCTACCTTCATCATCACATGC 59.188 47.826 0.00 0.00 0.00 4.06
229 230 4.053983 CGGTCTACCTTCATCATCACATG 58.946 47.826 0.00 0.00 0.00 3.21
230 231 3.493350 GCGGTCTACCTTCATCATCACAT 60.493 47.826 0.00 0.00 0.00 3.21
231 232 2.159099 GCGGTCTACCTTCATCATCACA 60.159 50.000 0.00 0.00 0.00 3.58
232 233 2.474816 GCGGTCTACCTTCATCATCAC 58.525 52.381 0.00 0.00 0.00 3.06
233 234 1.412710 GGCGGTCTACCTTCATCATCA 59.587 52.381 0.00 0.00 0.00 3.07
234 235 1.689273 AGGCGGTCTACCTTCATCATC 59.311 52.381 0.00 0.00 31.87 2.92
235 236 1.414181 CAGGCGGTCTACCTTCATCAT 59.586 52.381 0.00 0.00 34.42 2.45
236 237 0.824109 CAGGCGGTCTACCTTCATCA 59.176 55.000 0.00 0.00 34.42 3.07
237 238 1.112113 TCAGGCGGTCTACCTTCATC 58.888 55.000 0.00 0.00 34.42 2.92
238 239 1.568504 TTCAGGCGGTCTACCTTCAT 58.431 50.000 0.00 0.00 34.42 2.57
239 240 1.568504 ATTCAGGCGGTCTACCTTCA 58.431 50.000 0.00 0.00 34.42 3.02
240 241 3.555168 CCATATTCAGGCGGTCTACCTTC 60.555 52.174 0.00 0.00 34.42 3.46
241 242 2.368875 CCATATTCAGGCGGTCTACCTT 59.631 50.000 0.00 0.00 34.42 3.50
242 243 1.971357 CCATATTCAGGCGGTCTACCT 59.029 52.381 0.00 0.00 38.35 3.08
243 244 1.692519 ACCATATTCAGGCGGTCTACC 59.307 52.381 0.00 0.00 0.00 3.18
244 245 3.319972 TGTACCATATTCAGGCGGTCTAC 59.680 47.826 0.00 0.00 32.81 2.59
245 246 3.568443 TGTACCATATTCAGGCGGTCTA 58.432 45.455 0.00 0.00 32.81 2.59
246 247 2.394632 TGTACCATATTCAGGCGGTCT 58.605 47.619 0.00 0.00 32.81 3.85
247 248 2.870411 GTTGTACCATATTCAGGCGGTC 59.130 50.000 0.00 0.00 32.81 4.79
248 249 2.504175 AGTTGTACCATATTCAGGCGGT 59.496 45.455 0.00 0.00 35.46 5.68
249 250 3.131396 GAGTTGTACCATATTCAGGCGG 58.869 50.000 0.00 0.00 0.00 6.13
250 251 4.060038 AGAGTTGTACCATATTCAGGCG 57.940 45.455 0.00 0.00 0.00 5.52
251 252 6.163135 ACTAGAGTTGTACCATATTCAGGC 57.837 41.667 0.00 0.00 0.00 4.85
252 253 8.142551 GGTTACTAGAGTTGTACCATATTCAGG 58.857 40.741 0.00 0.00 0.00 3.86
253 254 8.915036 AGGTTACTAGAGTTGTACCATATTCAG 58.085 37.037 0.00 0.00 0.00 3.02
254 255 8.834004 AGGTTACTAGAGTTGTACCATATTCA 57.166 34.615 0.00 0.00 0.00 2.57
255 256 8.074972 CGAGGTTACTAGAGTTGTACCATATTC 58.925 40.741 0.00 1.20 0.00 1.75
256 257 7.559170 ACGAGGTTACTAGAGTTGTACCATATT 59.441 37.037 0.00 0.00 0.00 1.28
257 258 7.059156 ACGAGGTTACTAGAGTTGTACCATAT 58.941 38.462 0.00 0.00 0.00 1.78
258 259 6.418101 ACGAGGTTACTAGAGTTGTACCATA 58.582 40.000 0.00 0.00 0.00 2.74
259 260 5.259632 ACGAGGTTACTAGAGTTGTACCAT 58.740 41.667 0.00 0.00 0.00 3.55
260 261 4.655963 ACGAGGTTACTAGAGTTGTACCA 58.344 43.478 0.00 0.00 0.00 3.25
261 262 4.697352 TGACGAGGTTACTAGAGTTGTACC 59.303 45.833 0.00 0.00 0.00 3.34
262 263 5.180117 TGTGACGAGGTTACTAGAGTTGTAC 59.820 44.000 0.00 0.00 0.00 2.90
263 264 5.308014 TGTGACGAGGTTACTAGAGTTGTA 58.692 41.667 0.00 0.00 0.00 2.41
264 265 4.139786 TGTGACGAGGTTACTAGAGTTGT 58.860 43.478 0.00 0.00 0.00 3.32
265 266 4.761235 TGTGACGAGGTTACTAGAGTTG 57.239 45.455 0.00 0.00 0.00 3.16
266 267 5.979288 ATTGTGACGAGGTTACTAGAGTT 57.021 39.130 0.00 0.00 0.00 3.01
267 268 5.711036 AGAATTGTGACGAGGTTACTAGAGT 59.289 40.000 0.00 0.00 0.00 3.24
268 269 6.197364 AGAATTGTGACGAGGTTACTAGAG 57.803 41.667 0.00 0.00 0.00 2.43
269 270 6.387465 CAAGAATTGTGACGAGGTTACTAGA 58.613 40.000 0.00 0.00 42.34 2.43
270 271 6.633668 CAAGAATTGTGACGAGGTTACTAG 57.366 41.667 0.00 0.00 42.34 2.57
286 287 2.293399 GAGCCACAACCGAACAAGAATT 59.707 45.455 0.00 0.00 0.00 2.17
287 288 1.880027 GAGCCACAACCGAACAAGAAT 59.120 47.619 0.00 0.00 0.00 2.40
288 289 1.305201 GAGCCACAACCGAACAAGAA 58.695 50.000 0.00 0.00 0.00 2.52
289 290 0.534203 GGAGCCACAACCGAACAAGA 60.534 55.000 0.00 0.00 0.00 3.02
290 291 0.535102 AGGAGCCACAACCGAACAAG 60.535 55.000 0.00 0.00 0.00 3.16
291 292 0.817634 CAGGAGCCACAACCGAACAA 60.818 55.000 0.00 0.00 0.00 2.83
292 293 1.227823 CAGGAGCCACAACCGAACA 60.228 57.895 0.00 0.00 0.00 3.18
293 294 1.227853 ACAGGAGCCACAACCGAAC 60.228 57.895 0.00 0.00 0.00 3.95
294 295 1.070786 GACAGGAGCCACAACCGAA 59.929 57.895 0.00 0.00 0.00 4.30
295 296 1.837051 AGACAGGAGCCACAACCGA 60.837 57.895 0.00 0.00 0.00 4.69
296 297 1.669115 CAGACAGGAGCCACAACCG 60.669 63.158 0.00 0.00 0.00 4.44
297 298 1.302832 CCAGACAGGAGCCACAACC 60.303 63.158 0.00 0.00 41.22 3.77
298 299 1.754745 TCCAGACAGGAGCCACAAC 59.245 57.895 0.00 0.00 43.07 3.32
299 300 4.311700 TCCAGACAGGAGCCACAA 57.688 55.556 0.00 0.00 43.07 3.33
307 308 4.201657 TGCATGTTGAATATCCAGACAGG 58.798 43.478 0.00 0.00 39.47 4.00
308 309 5.823209 TTGCATGTTGAATATCCAGACAG 57.177 39.130 0.00 0.00 0.00 3.51
309 310 6.604396 AGAATTGCATGTTGAATATCCAGACA 59.396 34.615 0.00 0.00 0.00 3.41
310 311 7.035840 AGAATTGCATGTTGAATATCCAGAC 57.964 36.000 0.00 0.00 0.00 3.51
311 312 8.929260 ATAGAATTGCATGTTGAATATCCAGA 57.071 30.769 0.00 0.00 0.00 3.86
312 313 8.789762 TGATAGAATTGCATGTTGAATATCCAG 58.210 33.333 0.00 0.00 0.00 3.86
313 314 8.694581 TGATAGAATTGCATGTTGAATATCCA 57.305 30.769 0.00 0.00 0.00 3.41
314 315 9.403110 GTTGATAGAATTGCATGTTGAATATCC 57.597 33.333 0.00 0.00 0.00 2.59
339 340 5.961396 AGACGATGCGTAGGATAATTAGT 57.039 39.130 0.00 0.00 40.04 2.24
351 352 1.596752 TGGCACAAAGACGATGCGT 60.597 52.632 0.00 0.00 40.37 5.24
364 365 2.228115 GTGCAAGCACATTTGGCAC 58.772 52.632 19.47 0.00 45.53 5.01
383 384 5.061179 AGCTAGCTTTCCGTTACTTTCAAA 58.939 37.500 12.68 0.00 0.00 2.69
389 390 2.089980 TCGAGCTAGCTTTCCGTTACT 58.910 47.619 20.42 0.00 0.00 2.24
395 396 2.360801 AGTCTCATCGAGCTAGCTTTCC 59.639 50.000 20.42 5.16 0.00 3.13
403 404 2.571212 CACTAGGAGTCTCATCGAGCT 58.429 52.381 1.47 0.00 0.00 4.09
410 411 0.409876 ACTGGCCACTAGGAGTCTCA 59.590 55.000 0.00 0.00 36.89 3.27
457 1175 9.744468 TTTAGAGAGTTTTATTCAAACAAAGCC 57.256 29.630 0.61 0.00 46.55 4.35
525 1273 4.431214 CGTATAAATCGCATGTACGCTGAC 60.431 45.833 0.00 0.00 32.93 3.51
537 1285 0.788391 CCCGGCTTCGTATAAATCGC 59.212 55.000 0.00 0.00 0.00 4.58
573 1321 3.465258 AAAAACGCGTCCGGACCCT 62.465 57.895 28.52 8.26 39.22 4.34
635 1383 1.346068 GGCAGAGTTCTGTTCTGTCCT 59.654 52.381 10.57 0.00 45.45 3.85
637 1385 1.802069 GGGCAGAGTTCTGTTCTGTC 58.198 55.000 10.57 1.59 44.52 3.51
839 1587 5.300792 TCCAAGGATTGTGGAAACAAACTAC 59.699 40.000 0.00 0.00 46.99 2.73
854 1602 3.610911 GACGAACCAGATTCCAAGGATT 58.389 45.455 0.00 0.00 33.26 3.01
858 1606 2.263077 CTCGACGAACCAGATTCCAAG 58.737 52.381 0.00 0.00 33.26 3.61
897 1645 6.402456 ACCCACGATATAAGGAAAGTAGAC 57.598 41.667 0.00 0.00 0.00 2.59
901 1649 5.105228 TCGAAACCCACGATATAAGGAAAGT 60.105 40.000 0.00 0.00 34.85 2.66
942 1690 2.717580 TTCGATACGATTGATCCCCG 57.282 50.000 0.00 0.00 35.23 5.73
943 1691 3.179830 CGATTCGATACGATTGATCCCC 58.820 50.000 0.00 0.00 35.23 4.81
964 1712 1.005394 TCTTCCTTCCGCAACGACC 60.005 57.895 0.00 0.00 0.00 4.79
967 1715 0.243907 TCTCTCTTCCTTCCGCAACG 59.756 55.000 0.00 0.00 0.00 4.10
978 1726 3.141488 TCGCCGGCCTCTCTCTTC 61.141 66.667 23.46 0.00 0.00 2.87
1044 1792 0.317103 CGTCCTCGTCGCCTATGAAG 60.317 60.000 0.00 0.00 0.00 3.02
1157 1905 4.986587 CGTCGTCGGCACCGTCAA 62.987 66.667 9.23 0.00 40.74 3.18
1267 2021 2.048503 GTAACTCTGCGGCCACGT 60.049 61.111 2.24 0.00 43.45 4.49
1379 2135 7.027161 GCCGAGTAACAACACATGAAAATAAT 58.973 34.615 0.00 0.00 0.00 1.28
1767 2529 6.073327 TGAGATGTACCGTTGATGATAGAC 57.927 41.667 0.00 0.00 0.00 2.59
1818 2597 7.834068 ACTGACAATTAGCAATGTAGTACTG 57.166 36.000 5.39 0.00 0.00 2.74
1919 2704 4.347813 CTTGTTTGATTCCGAAACACGTT 58.652 39.130 0.00 0.00 41.76 3.99
2033 2818 1.203052 TCAGGGTACGTTTCGATGGTC 59.797 52.381 0.00 0.00 0.00 4.02
2045 2830 1.199558 GCTCGTCCGATATCAGGGTAC 59.800 57.143 3.12 0.56 0.00 3.34
2204 2989 6.317642 TCAGAGAGAGAACACTTACATAGAGC 59.682 42.308 0.00 0.00 0.00 4.09
2265 3050 5.106948 CGGGATGTTACATCAGATATGCAAC 60.107 44.000 24.30 5.27 0.00 4.17
2354 3143 3.216147 GCTAAATGCGCAGAAGGAAAA 57.784 42.857 18.32 0.00 0.00 2.29
2601 3392 6.598525 TGTTGATAGCAATCTAACGTTGTTG 58.401 36.000 11.99 13.69 36.22 3.33
2602 3393 6.426937 ACTGTTGATAGCAATCTAACGTTGTT 59.573 34.615 11.99 0.11 36.22 2.83
2603 3394 5.932303 ACTGTTGATAGCAATCTAACGTTGT 59.068 36.000 11.99 0.00 36.22 3.32
2665 3456 5.097529 TGCGAAATTTCAGATGAAAGATGC 58.902 37.500 17.99 13.18 45.87 3.91
2712 3503 0.462375 ACAGGCACACAACGACTGTA 59.538 50.000 0.00 0.00 40.31 2.74
2803 3594 0.813184 CCATACAAGCCAAGTGCCAG 59.187 55.000 0.00 0.00 42.71 4.85
2902 3693 4.704965 AGTTCAGAACCTTACCAGAACAC 58.295 43.478 9.85 0.00 38.18 3.32
2946 3737 3.065655 CAGAAGCAGAGCATAGTATGGC 58.934 50.000 12.07 6.63 0.00 4.40
3018 3809 6.372659 ACAATTGTGACCACTATAAAGCTGAG 59.627 38.462 11.07 0.00 0.00 3.35
3446 4240 9.392259 GGGTTAATTTAGTGAACTACTGCTAAT 57.608 33.333 0.00 0.00 40.65 1.73
3448 4242 7.333323 GGGGTTAATTTAGTGAACTACTGCTA 58.667 38.462 0.00 0.00 40.65 3.49
3449 4243 6.178324 GGGGTTAATTTAGTGAACTACTGCT 58.822 40.000 0.00 0.00 40.65 4.24
3450 4244 5.356190 GGGGGTTAATTTAGTGAACTACTGC 59.644 44.000 0.00 0.00 40.65 4.40
3451 4245 6.478129 TGGGGGTTAATTTAGTGAACTACTG 58.522 40.000 0.00 0.00 40.65 2.74
3452 4246 6.707273 TGGGGGTTAATTTAGTGAACTACT 57.293 37.500 0.00 0.00 43.56 2.57
3453 4247 7.764141 TTTGGGGGTTAATTTAGTGAACTAC 57.236 36.000 0.00 0.00 0.00 2.73
3454 4248 7.040548 CGTTTTGGGGGTTAATTTAGTGAACTA 60.041 37.037 0.00 0.00 0.00 2.24
3704 4498 6.534079 CGATTACCTCCCACAAAAGTACTAAG 59.466 42.308 0.00 0.00 0.00 2.18
3712 4506 6.373216 CAGTTAATCGATTACCTCCCACAAAA 59.627 38.462 17.33 0.00 0.00 2.44
3762 4556 4.133078 CCATCTTCAAGGCTAGATGTTCC 58.867 47.826 19.36 0.00 43.94 3.62
3832 4626 2.223923 TGTTATGCACAAAACCACCTGC 60.224 45.455 0.00 0.00 29.87 4.85
3951 4745 2.093181 TGCAACAACTACACACAGGTCT 60.093 45.455 0.00 0.00 0.00 3.85
4034 4828 6.482835 CGATGTATATTGCAAACGAAGGAAA 58.517 36.000 1.71 0.00 0.00 3.13
4083 4877 7.361457 GCCAAATACAACAAGTACCGTATTTCT 60.361 37.037 0.00 0.00 40.68 2.52
4085 4879 6.349528 GGCCAAATACAACAAGTACCGTATTT 60.350 38.462 0.00 0.00 42.40 1.40
4119 4913 6.479990 TCGGTCTATTCTGAAATATTGTGCTG 59.520 38.462 0.00 0.00 0.00 4.41
4359 5155 4.890158 TCTTGCTGATAAGTCAAGGACA 57.110 40.909 11.91 0.00 38.13 4.02
4537 5335 0.884704 GCACCCAAAGTTGCTCGAGA 60.885 55.000 18.75 0.00 0.00 4.04
4735 5534 8.953313 ACTAAGTTGCCAACAATACTATAAACC 58.047 33.333 10.69 0.00 38.27 3.27
4749 5548 2.882137 CCTCGGAAAACTAAGTTGCCAA 59.118 45.455 0.00 0.00 0.00 4.52
4880 5681 6.183360 TGCATATTAGTGTTGCTAAGTTGCTC 60.183 38.462 17.04 0.00 43.93 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.