Multiple sequence alignment - TraesCS5D01G090800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G090800 chr5D 100.000 7744 0 0 1 7744 97825035 97832778 0.000000e+00 14301
1 TraesCS5D01G090800 chr5B 96.347 5831 141 27 903 6694 107190438 107196235 0.000000e+00 9522
2 TraesCS5D01G090800 chr5B 93.139 962 33 9 6805 7744 107196198 107197148 0.000000e+00 1380
3 TraesCS5D01G090800 chr5A 95.210 2923 95 14 1690 4599 105695229 105692339 0.000000e+00 4580
4 TraesCS5D01G090800 chr5A 96.676 1474 47 2 4598 6069 105691983 105690510 0.000000e+00 2449
5 TraesCS5D01G090800 chr5A 91.598 964 23 19 6805 7744 105689975 105689046 0.000000e+00 1279
6 TraesCS5D01G090800 chr5A 94.293 806 25 10 900 1692 105696057 105695260 0.000000e+00 1214
7 TraesCS5D01G090800 chr5A 95.730 445 14 3 6253 6694 105690381 105689939 0.000000e+00 712
8 TraesCS5D01G090800 chr6D 95.243 904 39 4 4 904 28985252 28984350 0.000000e+00 1428
9 TraesCS5D01G090800 chr6D 93.846 130 6 2 6689 6817 39092682 39092810 2.200000e-45 195
10 TraesCS5D01G090800 chr6D 95.833 120 5 0 6691 6810 108860765 108860646 2.200000e-45 195
11 TraesCS5D01G090800 chr3A 94.040 906 50 4 1 903 328603894 328604798 0.000000e+00 1371
12 TraesCS5D01G090800 chr4A 93.134 903 59 3 4 903 155597063 155596161 0.000000e+00 1321
13 TraesCS5D01G090800 chr4A 95.200 125 5 1 6691 6814 702148909 702148785 6.130000e-46 196
14 TraesCS5D01G090800 chr7B 92.401 908 65 4 1 904 484596485 484597392 0.000000e+00 1291
15 TraesCS5D01G090800 chr3B 85.589 909 116 12 4 904 754327995 754327094 0.000000e+00 939
16 TraesCS5D01G090800 chr3B 95.798 119 5 0 6690 6808 694025133 694025015 7.930000e-45 193
17 TraesCS5D01G090800 chr1B 85.730 897 106 6 11 903 508389467 508390345 0.000000e+00 928
18 TraesCS5D01G090800 chr1B 91.912 136 11 0 6683 6818 613246053 613245918 2.850000e-44 191
19 TraesCS5D01G090800 chr2A 90.580 690 58 7 216 902 766453973 766454658 0.000000e+00 907
20 TraesCS5D01G090800 chr2A 79.248 665 119 15 177 829 61346722 61347379 5.510000e-121 446
21 TraesCS5D01G090800 chr2A 95.808 167 7 0 1 167 766453809 766453975 3.560000e-68 270
22 TraesCS5D01G090800 chr2D 79.557 587 105 11 324 900 60774849 60775430 9.360000e-109 405
23 TraesCS5D01G090800 chr2D 94.615 130 6 1 6689 6817 116827424 116827295 4.740000e-47 200
24 TraesCS5D01G090800 chr4D 94.074 135 6 2 6682 6815 105237797 105237930 3.660000e-48 204
25 TraesCS5D01G090800 chr2B 96.639 119 4 0 6691 6809 723434349 723434231 1.700000e-46 198
26 TraesCS5D01G090800 chr1D 93.284 134 8 1 6690 6823 469813518 469813386 6.130000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G090800 chr5D 97825035 97832778 7743 False 14301.0 14301 100.0000 1 7744 1 chr5D.!!$F1 7743
1 TraesCS5D01G090800 chr5B 107190438 107197148 6710 False 5451.0 9522 94.7430 903 7744 2 chr5B.!!$F1 6841
2 TraesCS5D01G090800 chr5A 105689046 105696057 7011 True 2046.8 4580 94.7014 900 7744 5 chr5A.!!$R1 6844
3 TraesCS5D01G090800 chr6D 28984350 28985252 902 True 1428.0 1428 95.2430 4 904 1 chr6D.!!$R1 900
4 TraesCS5D01G090800 chr3A 328603894 328604798 904 False 1371.0 1371 94.0400 1 903 1 chr3A.!!$F1 902
5 TraesCS5D01G090800 chr4A 155596161 155597063 902 True 1321.0 1321 93.1340 4 903 1 chr4A.!!$R1 899
6 TraesCS5D01G090800 chr7B 484596485 484597392 907 False 1291.0 1291 92.4010 1 904 1 chr7B.!!$F1 903
7 TraesCS5D01G090800 chr3B 754327094 754327995 901 True 939.0 939 85.5890 4 904 1 chr3B.!!$R2 900
8 TraesCS5D01G090800 chr1B 508389467 508390345 878 False 928.0 928 85.7300 11 903 1 chr1B.!!$F1 892
9 TraesCS5D01G090800 chr2A 766453809 766454658 849 False 588.5 907 93.1940 1 902 2 chr2A.!!$F2 901
10 TraesCS5D01G090800 chr2A 61346722 61347379 657 False 446.0 446 79.2480 177 829 1 chr2A.!!$F1 652
11 TraesCS5D01G090800 chr2D 60774849 60775430 581 False 405.0 405 79.5570 324 900 1 chr2D.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 724 0.034896 GGTGGTGGACGACATCAAGT 59.965 55.000 0.00 0.00 43.03 3.16 F
803 870 1.029947 CATGTTCTACGGTTGGGGGC 61.030 60.000 0.00 0.00 0.00 5.80 F
1161 1232 1.368374 CAGAGTTAAACCCCTCCCCA 58.632 55.000 0.00 0.00 0.00 4.96 F
1389 1473 1.531739 TTTGGTCGCTTTGGCCATCC 61.532 55.000 6.09 3.47 34.44 3.51 F
2793 2921 0.911769 TCCTACTGTGGATGGCTTGG 59.088 55.000 0.00 0.00 0.00 3.61 F
3955 4093 0.673985 TAGTTCCTCGATCATGCCCG 59.326 55.000 0.00 0.00 0.00 6.13 F
5044 5541 1.307097 GGCATCCTTGAGATCACAGC 58.693 55.000 0.00 0.00 30.59 4.40 F
6460 6969 2.048023 CACATGTTCCCAGCGGCAT 61.048 57.895 1.45 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2132 1.059098 ATGGAGGTCACAGCAACAGA 58.941 50.000 0.00 0.00 0.00 3.41 R
2686 2808 0.245539 TTCGACGACACATCCTTCCC 59.754 55.000 0.00 0.00 0.00 3.97 R
2793 2921 0.893727 ACAGAACCCATGGCCGAAAC 60.894 55.000 6.09 0.00 0.00 2.78 R
2910 3047 5.475220 CACCTGACTGTATACCTGGAGATAG 59.525 48.000 0.00 0.00 0.00 2.08 R
4346 4486 1.723384 CGTTCATACGTTGTTTGGCCG 60.723 52.381 0.00 0.00 42.72 6.13 R
5896 6397 0.178964 CAGCAAAAGGGGGTGGAGAA 60.179 55.000 0.00 0.00 0.00 2.87 R
6687 7203 0.033796 TTCGGACGGAGGGAGTACAT 60.034 55.000 0.00 0.00 0.00 2.29 R
7659 8206 1.432657 GTAGCGGAGAAGGACGTCC 59.567 63.158 27.67 27.67 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.946402 CACACTTGTGTAATTTGTGCGA 58.054 40.909 6.06 0.00 40.96 5.10
77 78 2.546584 CGAATGCGAGGATTCATGGAGA 60.547 50.000 15.64 0.00 40.82 3.71
619 685 6.295518 GGATCTCAATGTCCAGAGCATACATA 60.296 42.308 0.00 0.00 33.59 2.29
658 724 0.034896 GGTGGTGGACGACATCAAGT 59.965 55.000 0.00 0.00 43.03 3.16
803 870 1.029947 CATGTTCTACGGTTGGGGGC 61.030 60.000 0.00 0.00 0.00 5.80
1128 1198 2.947652 GGTACTGTCACTAGCATCCGTA 59.052 50.000 0.00 0.00 0.00 4.02
1129 1199 3.243002 GGTACTGTCACTAGCATCCGTAC 60.243 52.174 0.00 0.00 0.00 3.67
1134 1205 2.094390 GTCACTAGCATCCGTACAACCA 60.094 50.000 0.00 0.00 0.00 3.67
1152 1223 4.649088 ACCAACCAAAGCAGAGTTAAAC 57.351 40.909 0.00 0.00 0.00 2.01
1161 1232 1.368374 CAGAGTTAAACCCCTCCCCA 58.632 55.000 0.00 0.00 0.00 4.96
1166 1237 2.453212 AGTTAAACCCCTCCCCATTGTT 59.547 45.455 0.00 0.00 0.00 2.83
1389 1473 1.531739 TTTGGTCGCTTTGGCCATCC 61.532 55.000 6.09 3.47 34.44 3.51
1745 1865 5.368145 TCAGACTTACATTCAACAGCAACT 58.632 37.500 0.00 0.00 0.00 3.16
1779 1899 3.415212 GCATGGTGCACATATACCTGAT 58.585 45.455 20.43 0.00 44.26 2.90
1809 1930 6.165700 ACACAGGAAATGCTTCTGATTTTT 57.834 33.333 0.00 0.00 0.00 1.94
2010 2132 5.762218 CACTCTTGTCTTCACTGGAATCTTT 59.238 40.000 0.00 0.00 31.34 2.52
2194 2316 9.031537 TCATTGTAGACTCTGTTTCCTAACATA 57.968 33.333 0.00 0.00 43.02 2.29
2195 2317 9.307121 CATTGTAGACTCTGTTTCCTAACATAG 57.693 37.037 0.00 0.00 43.02 2.23
2496 2618 5.451908 ACATGCTTTCAATGTTGTAACTCG 58.548 37.500 0.00 0.00 0.00 4.18
2686 2808 4.625311 TGATAATAATGCCGCATGTACGAG 59.375 41.667 6.63 0.00 34.06 4.18
2793 2921 0.911769 TCCTACTGTGGATGGCTTGG 59.088 55.000 0.00 0.00 0.00 3.61
2910 3047 5.045724 AGAGATCTCCCATCAGATATTTGCC 60.046 44.000 19.30 0.00 32.94 4.52
3488 3625 6.993308 TGCTTCATAGTACACCACAAACTTTA 59.007 34.615 0.00 0.00 0.00 1.85
3500 3637 6.530181 CACCACAAACTTTAGTTTTTGAGGAC 59.470 38.462 18.31 0.00 45.07 3.85
3773 3910 8.358895 TCATGTTTCTGTGCAAAATGAATTCTA 58.641 29.630 7.05 0.00 0.00 2.10
3900 4038 5.922053 TGCTCTAATGTGCATAATCTGTCT 58.078 37.500 0.00 0.00 37.71 3.41
3955 4093 0.673985 TAGTTCCTCGATCATGCCCG 59.326 55.000 0.00 0.00 0.00 6.13
3989 4127 9.462174 CTGTAAATGTTCTGTTGCTTTAATTGA 57.538 29.630 0.00 0.00 0.00 2.57
4087 4225 4.703575 ACCATGCTAGCCAATATTATGCTG 59.296 41.667 13.29 10.80 36.57 4.41
4125 4265 8.592809 TGGCCATGTAAAAGAAATTTTATCAGT 58.407 29.630 0.00 0.00 32.27 3.41
4346 4486 4.846779 TTCCTTGGTTTACAATGCTGAC 57.153 40.909 0.00 0.00 38.65 3.51
4533 4673 6.259123 AGACCATCTTTTCTTTTGGGATCAT 58.741 36.000 0.00 0.00 33.39 2.45
4603 4743 9.444600 GGACTAGACCTGTTTGTTAATAATTGA 57.555 33.333 3.79 0.00 0.00 2.57
4754 5251 8.956426 TCCCAATTTATGATGAAACACTAAGAC 58.044 33.333 0.00 0.00 0.00 3.01
4808 5305 3.564053 TGGACCGTTAAACTTCCAGTT 57.436 42.857 0.00 0.00 40.80 3.16
4846 5343 1.825191 CATGCCCATCAACTCCCGG 60.825 63.158 0.00 0.00 0.00 5.73
5038 5535 1.642762 ACCCTTTGGCATCCTTGAGAT 59.357 47.619 0.00 0.00 32.49 2.75
5044 5541 1.307097 GGCATCCTTGAGATCACAGC 58.693 55.000 0.00 0.00 30.59 4.40
5230 5727 9.162764 TGCTCCTGTTAGATTTATTTGAGTTAC 57.837 33.333 0.00 0.00 0.00 2.50
5609 6108 4.827284 TGGAAAAGAAACATGGGAAGAGAC 59.173 41.667 0.00 0.00 0.00 3.36
5786 6286 6.778542 TGGAAATTCCACTATGGGATATCA 57.221 37.500 11.23 0.00 42.67 2.15
5847 6347 6.008960 AGATTCTGAGAGAGGTTTGCATTTT 58.991 36.000 0.00 0.00 0.00 1.82
5856 6356 6.536224 AGAGAGGTTTGCATTTTGTTTTTCTG 59.464 34.615 0.00 0.00 0.00 3.02
5896 6397 8.951787 TTAAGTTGTTACACACTATGTTCTGT 57.048 30.769 0.00 0.00 43.19 3.41
5903 6404 4.632153 ACACACTATGTTCTGTTCTCCAC 58.368 43.478 0.00 0.00 38.98 4.02
5930 6431 6.320171 CCTTTTGCTGATTCAGTAATGTGAG 58.680 40.000 16.44 11.97 36.13 3.51
6059 6560 9.777575 AATAGTTGTAGTGTTGTGTGTTAAAAC 57.222 29.630 0.00 0.00 0.00 2.43
6069 6570 7.423314 GTGTTGTGTGTTAAAACGTTACAGTAG 59.577 37.037 0.00 0.00 0.00 2.57
6070 6571 6.586868 TGTGTGTTAAAACGTTACAGTAGG 57.413 37.500 0.00 0.00 0.00 3.18
6071 6572 5.006552 TGTGTGTTAAAACGTTACAGTAGGC 59.993 40.000 0.00 0.00 0.00 3.93
6073 6574 5.583854 TGTGTTAAAACGTTACAGTAGGCAA 59.416 36.000 0.00 0.00 0.00 4.52
6112 6621 2.511600 GTGTGAATCGAGGGCCCG 60.512 66.667 18.44 5.41 0.00 6.13
6460 6969 2.048023 CACATGTTCCCAGCGGCAT 61.048 57.895 1.45 0.00 0.00 4.40
6596 7105 6.539649 TTTGTTCTTTCTCATACCGTCTTG 57.460 37.500 0.00 0.00 0.00 3.02
6636 7151 9.436957 TGGATAACAGAACAGAATCTAGTTTTC 57.563 33.333 0.00 0.00 0.00 2.29
6695 7211 6.509418 TTTTGAGGCAAATGTATGTACTCC 57.491 37.500 0.00 0.00 33.19 3.85
6696 7212 4.150897 TGAGGCAAATGTATGTACTCCC 57.849 45.455 0.00 0.00 0.00 4.30
6697 7213 3.780294 TGAGGCAAATGTATGTACTCCCT 59.220 43.478 0.00 0.00 0.00 4.20
6698 7214 4.141711 TGAGGCAAATGTATGTACTCCCTC 60.142 45.833 0.00 0.00 37.45 4.30
6699 7215 3.136626 AGGCAAATGTATGTACTCCCTCC 59.863 47.826 0.00 0.00 0.00 4.30
6700 7216 3.131396 GCAAATGTATGTACTCCCTCCG 58.869 50.000 0.00 0.00 0.00 4.63
6701 7217 3.431766 GCAAATGTATGTACTCCCTCCGT 60.432 47.826 0.00 0.00 0.00 4.69
6702 7218 4.369182 CAAATGTATGTACTCCCTCCGTC 58.631 47.826 0.00 0.00 0.00 4.79
6703 7219 2.062971 TGTATGTACTCCCTCCGTCC 57.937 55.000 0.00 0.00 0.00 4.79
6704 7220 0.950116 GTATGTACTCCCTCCGTCCG 59.050 60.000 0.00 0.00 0.00 4.79
6705 7221 0.839277 TATGTACTCCCTCCGTCCGA 59.161 55.000 0.00 0.00 0.00 4.55
6706 7222 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
6707 7223 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
6708 7224 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
6709 7225 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
6710 7226 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
6711 7227 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
6712 7228 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
6713 7229 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
6714 7230 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
6715 7231 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
6716 7232 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
6717 7233 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
6726 7242 5.560148 CGAAAATACTTGTCGGAGAAATGG 58.440 41.667 0.00 0.00 39.69 3.16
6727 7243 5.350365 CGAAAATACTTGTCGGAGAAATGGA 59.650 40.000 0.00 0.00 39.69 3.41
6728 7244 6.037172 CGAAAATACTTGTCGGAGAAATGGAT 59.963 38.462 0.00 0.00 39.69 3.41
6729 7245 7.223971 CGAAAATACTTGTCGGAGAAATGGATA 59.776 37.037 0.00 0.00 39.69 2.59
6730 7246 8.801882 AAAATACTTGTCGGAGAAATGGATAA 57.198 30.769 0.00 0.00 39.69 1.75
6731 7247 8.801882 AAATACTTGTCGGAGAAATGGATAAA 57.198 30.769 0.00 0.00 39.69 1.40
6732 7248 8.801882 AATACTTGTCGGAGAAATGGATAAAA 57.198 30.769 0.00 0.00 39.69 1.52
6733 7249 8.801882 ATACTTGTCGGAGAAATGGATAAAAA 57.198 30.769 0.00 0.00 39.69 1.94
6734 7250 7.703058 ACTTGTCGGAGAAATGGATAAAAAT 57.297 32.000 0.00 0.00 39.69 1.82
6735 7251 7.538575 ACTTGTCGGAGAAATGGATAAAAATG 58.461 34.615 0.00 0.00 39.69 2.32
6736 7252 6.449635 TGTCGGAGAAATGGATAAAAATGG 57.550 37.500 0.00 0.00 39.69 3.16
6737 7253 6.184068 TGTCGGAGAAATGGATAAAAATGGA 58.816 36.000 0.00 0.00 39.69 3.41
6738 7254 6.833416 TGTCGGAGAAATGGATAAAAATGGAT 59.167 34.615 0.00 0.00 39.69 3.41
6739 7255 7.141363 GTCGGAGAAATGGATAAAAATGGATG 58.859 38.462 0.00 0.00 39.69 3.51
6740 7256 6.833416 TCGGAGAAATGGATAAAAATGGATGT 59.167 34.615 0.00 0.00 0.00 3.06
6741 7257 7.996066 TCGGAGAAATGGATAAAAATGGATGTA 59.004 33.333 0.00 0.00 0.00 2.29
6742 7258 8.796475 CGGAGAAATGGATAAAAATGGATGTAT 58.204 33.333 0.00 0.00 0.00 2.29
6779 7295 9.915629 AATACGTCTAGATACATTCATTTCTCC 57.084 33.333 0.00 0.00 0.00 3.71
6780 7296 6.439599 ACGTCTAGATACATTCATTTCTCCG 58.560 40.000 0.00 0.00 0.00 4.63
6781 7297 6.262496 ACGTCTAGATACATTCATTTCTCCGA 59.738 38.462 0.00 0.00 0.00 4.55
6782 7298 7.040340 ACGTCTAGATACATTCATTTCTCCGAT 60.040 37.037 0.00 0.00 0.00 4.18
6783 7299 8.451748 CGTCTAGATACATTCATTTCTCCGATA 58.548 37.037 0.00 0.00 0.00 2.92
6792 7308 9.057089 ACATTCATTTCTCCGATAAGTATTTCC 57.943 33.333 0.00 0.00 0.00 3.13
6793 7309 7.709269 TTCATTTCTCCGATAAGTATTTCCG 57.291 36.000 0.00 0.00 0.00 4.30
6794 7310 6.812998 TCATTTCTCCGATAAGTATTTCCGT 58.187 36.000 0.00 0.00 0.00 4.69
6795 7311 7.944061 TCATTTCTCCGATAAGTATTTCCGTA 58.056 34.615 0.00 0.00 0.00 4.02
6796 7312 7.864379 TCATTTCTCCGATAAGTATTTCCGTAC 59.136 37.037 0.00 0.00 0.00 3.67
6797 7313 5.348418 TCTCCGATAAGTATTTCCGTACG 57.652 43.478 8.69 8.69 0.00 3.67
6798 7314 4.214119 TCTCCGATAAGTATTTCCGTACGG 59.786 45.833 28.66 28.66 39.30 4.02
6799 7315 4.133820 TCCGATAAGTATTTCCGTACGGA 58.866 43.478 32.61 32.61 43.35 4.69
6800 7316 4.214119 TCCGATAAGTATTTCCGTACGGAG 59.786 45.833 33.67 19.18 46.06 4.63
6801 7317 4.470462 CGATAAGTATTTCCGTACGGAGG 58.530 47.826 33.67 10.36 46.06 4.30
6802 7318 4.614535 CGATAAGTATTTCCGTACGGAGGG 60.615 50.000 33.67 9.98 46.06 4.30
6803 7319 2.442236 AGTATTTCCGTACGGAGGGA 57.558 50.000 33.67 24.13 46.06 4.20
6804 7320 2.305009 AGTATTTCCGTACGGAGGGAG 58.695 52.381 33.67 8.83 46.06 4.30
6805 7321 2.027385 GTATTTCCGTACGGAGGGAGT 58.973 52.381 33.67 20.06 46.06 3.85
6806 7322 2.442236 ATTTCCGTACGGAGGGAGTA 57.558 50.000 33.67 17.87 46.06 2.59
6807 7323 1.463674 TTTCCGTACGGAGGGAGTAC 58.536 55.000 33.67 0.00 46.06 2.73
6808 7324 0.620556 TTCCGTACGGAGGGAGTACT 59.379 55.000 33.67 0.00 46.06 2.73
6809 7325 1.496060 TCCGTACGGAGGGAGTACTA 58.504 55.000 32.61 6.92 41.51 1.82
6810 7326 2.050144 TCCGTACGGAGGGAGTACTAT 58.950 52.381 32.61 0.00 41.51 2.12
6811 7327 2.439507 TCCGTACGGAGGGAGTACTATT 59.560 50.000 32.61 0.00 41.51 1.73
6812 7328 3.117888 TCCGTACGGAGGGAGTACTATTT 60.118 47.826 32.61 0.00 41.51 1.40
6813 7329 3.633986 CCGTACGGAGGGAGTACTATTTT 59.366 47.826 30.64 0.00 41.51 1.82
6814 7330 4.821805 CCGTACGGAGGGAGTACTATTTTA 59.178 45.833 30.64 0.00 41.51 1.52
6815 7331 5.049129 CCGTACGGAGGGAGTACTATTTTAG 60.049 48.000 30.64 0.00 41.51 1.85
6816 7332 5.529060 CGTACGGAGGGAGTACTATTTTAGT 59.471 44.000 7.57 0.00 41.51 2.24
6817 7333 6.038714 CGTACGGAGGGAGTACTATTTTAGTT 59.961 42.308 7.57 0.00 41.51 2.24
6818 7334 6.864151 ACGGAGGGAGTACTATTTTAGTTT 57.136 37.500 0.00 0.00 40.14 2.66
6859 7375 8.923683 GTCTGTACTATTTTAGTGTTGTCCTTC 58.076 37.037 0.00 0.00 39.81 3.46
6860 7376 8.092687 TCTGTACTATTTTAGTGTTGTCCTTCC 58.907 37.037 0.00 0.00 39.81 3.46
6986 7503 3.719144 GGCGAAACCAACCGTCCG 61.719 66.667 0.00 0.00 38.86 4.79
6987 7504 3.719144 GCGAAACCAACCGTCCGG 61.719 66.667 3.76 3.76 42.03 5.14
7114 7631 2.284405 TTCGTCTCCACCTCCCCC 60.284 66.667 0.00 0.00 0.00 5.40
7115 7632 2.807036 CTTCGTCTCCACCTCCCCCT 62.807 65.000 0.00 0.00 0.00 4.79
7119 7639 4.787280 CTCCACCTCCCCCTCGCT 62.787 72.222 0.00 0.00 0.00 4.93
7149 7674 4.227134 CGGATCAGAGCCCACCCG 62.227 72.222 0.00 0.00 0.00 5.28
7202 7735 0.472471 AACGGTCTCCTGCTTCCAAA 59.528 50.000 0.00 0.00 0.00 3.28
7203 7736 0.250338 ACGGTCTCCTGCTTCCAAAC 60.250 55.000 0.00 0.00 0.00 2.93
7204 7737 0.955919 CGGTCTCCTGCTTCCAAACC 60.956 60.000 0.00 0.00 0.00 3.27
7205 7738 0.609406 GGTCTCCTGCTTCCAAACCC 60.609 60.000 0.00 0.00 0.00 4.11
7206 7739 0.609406 GTCTCCTGCTTCCAAACCCC 60.609 60.000 0.00 0.00 0.00 4.95
7207 7740 1.304464 CTCCTGCTTCCAAACCCCC 60.304 63.158 0.00 0.00 0.00 5.40
7208 7741 2.080336 CTCCTGCTTCCAAACCCCCA 62.080 60.000 0.00 0.00 0.00 4.96
7209 7742 1.079073 CCTGCTTCCAAACCCCCAT 59.921 57.895 0.00 0.00 0.00 4.00
7210 7743 0.972471 CCTGCTTCCAAACCCCCATC 60.972 60.000 0.00 0.00 0.00 3.51
7211 7744 0.251742 CTGCTTCCAAACCCCCATCA 60.252 55.000 0.00 0.00 0.00 3.07
7212 7745 0.189574 TGCTTCCAAACCCCCATCAA 59.810 50.000 0.00 0.00 0.00 2.57
7218 7751 1.655372 CAAACCCCCATCAAACCCAT 58.345 50.000 0.00 0.00 0.00 4.00
7224 7757 2.127232 CCATCAAACCCATCCCGCC 61.127 63.158 0.00 0.00 0.00 6.13
7668 8215 4.719369 GCGCTCGTGGACGTCCTT 62.719 66.667 33.39 0.00 40.80 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.171237 TGTCTCCATGAATCCTCGCATT 59.829 45.455 0.00 0.00 0.00 3.56
77 78 0.625316 TACATTCCAGCAGGGCATGT 59.375 50.000 14.89 14.89 40.34 3.21
636 702 1.118965 TGATGTCGTCCACCACCACT 61.119 55.000 0.00 0.00 0.00 4.00
658 724 5.928976 TCTATAGCTTGCCAAATGCTTCTA 58.071 37.500 0.00 0.00 42.00 2.10
1128 1198 2.143876 ACTCTGCTTTGGTTGGTTGT 57.856 45.000 0.00 0.00 0.00 3.32
1129 1199 4.647424 TTAACTCTGCTTTGGTTGGTTG 57.353 40.909 0.00 0.00 0.00 3.77
1134 1205 2.963101 GGGGTTTAACTCTGCTTTGGTT 59.037 45.455 0.00 0.00 0.00 3.67
1152 1223 1.266178 GAAACAACAATGGGGAGGGG 58.734 55.000 0.00 0.00 0.00 4.79
1161 1232 4.463050 TTAGGGTCTGGGAAACAACAAT 57.537 40.909 0.00 0.00 0.00 2.71
1166 1237 1.426215 GGGTTTAGGGTCTGGGAAACA 59.574 52.381 0.00 0.00 34.22 2.83
1303 1386 1.589993 CCTACGATGCTGCTGTCCG 60.590 63.158 0.00 1.79 0.00 4.79
1304 1387 0.807667 CACCTACGATGCTGCTGTCC 60.808 60.000 0.00 0.00 0.00 4.02
1306 1389 1.448540 GCACCTACGATGCTGCTGT 60.449 57.895 0.00 0.00 40.08 4.40
1307 1390 3.403277 GCACCTACGATGCTGCTG 58.597 61.111 0.00 0.00 40.08 4.41
1312 1395 0.460311 ACCTGTAGCACCTACGATGC 59.540 55.000 0.00 0.00 39.58 3.91
1389 1473 3.390135 ACACACAACAGTCGTCATAAGG 58.610 45.455 0.00 0.00 0.00 2.69
1608 1694 9.273016 AGAAGACATCGATTTGTAAAGAAAAGA 57.727 29.630 0.00 0.00 0.00 2.52
1615 1701 9.599866 ACATATCAGAAGACATCGATTTGTAAA 57.400 29.630 0.00 0.00 34.73 2.01
1745 1865 2.233431 GCACCATGCAAAAGGGATTACA 59.767 45.455 7.93 0.00 44.26 2.41
1779 1899 5.239306 CAGAAGCATTTCCTGTGTACTGAAA 59.761 40.000 0.00 0.00 33.64 2.69
1809 1930 8.415192 GATACATCGATGTGTGGTTTAAACTA 57.585 34.615 35.46 15.09 41.89 2.24
2010 2132 1.059098 ATGGAGGTCACAGCAACAGA 58.941 50.000 0.00 0.00 0.00 3.41
2194 2316 4.999950 GTCTGGAAGTTCAATGTGACATCT 59.000 41.667 5.01 0.00 33.76 2.90
2195 2317 4.756642 TGTCTGGAAGTTCAATGTGACATC 59.243 41.667 5.01 0.00 33.76 3.06
2496 2618 7.227314 TGAGAATGGACATGCACAATTAGATAC 59.773 37.037 0.00 0.00 0.00 2.24
2686 2808 0.245539 TTCGACGACACATCCTTCCC 59.754 55.000 0.00 0.00 0.00 3.97
2793 2921 0.893727 ACAGAACCCATGGCCGAAAC 60.894 55.000 6.09 0.00 0.00 2.78
2910 3047 5.475220 CACCTGACTGTATACCTGGAGATAG 59.525 48.000 0.00 0.00 0.00 2.08
2978 3115 9.384764 AGAAAAGTATCAGCATTAGTAACTTCC 57.615 33.333 0.00 0.00 0.00 3.46
3462 3599 5.373222 AGTTTGTGGTGTACTATGAAGCAA 58.627 37.500 0.00 0.00 0.00 3.91
3488 3625 9.628500 ATCTTAGTTAGTTTGTCCTCAAAAACT 57.372 29.630 12.26 12.26 45.89 2.66
3500 3637 5.569059 CCTGCGCAAAATCTTAGTTAGTTTG 59.431 40.000 13.05 0.00 33.35 2.93
3773 3910 3.567164 CACAAGTGCCAGAATTTGAGTCT 59.433 43.478 0.00 0.00 0.00 3.24
3955 4093 6.360681 GCAACAGAACATTTACAGTGAATGAC 59.639 38.462 21.68 14.97 37.79 3.06
3989 4127 7.624549 ACACAAGGATACAGTATCAATCACTT 58.375 34.615 20.17 11.59 36.91 3.16
4125 4265 9.639601 CACTTCATTTAGTATTAGTCTGACACA 57.360 33.333 10.88 0.00 0.00 3.72
4346 4486 1.723384 CGTTCATACGTTGTTTGGCCG 60.723 52.381 0.00 0.00 42.72 6.13
4603 4743 4.890499 TCCTCCTCTAAACTCCATCTCT 57.110 45.455 0.00 0.00 0.00 3.10
4754 5251 8.948853 TCGTTGCTCAAAGAATGTTTAATAAG 57.051 30.769 0.00 0.00 0.00 1.73
4808 5305 3.023832 TGCGGATGTAAGTGAGATGAGA 58.976 45.455 0.00 0.00 0.00 3.27
4913 5410 0.179235 CAACCACCATAACGAACGCG 60.179 55.000 3.53 3.53 44.79 6.01
5038 5535 1.204704 CGGAACTATGGTGAGCTGTGA 59.795 52.381 0.00 0.00 0.00 3.58
5044 5541 5.223382 GTCATATGACGGAACTATGGTGAG 58.777 45.833 19.63 0.00 35.12 3.51
5609 6108 2.905075 TGGTCAGAAATGCACCTATCG 58.095 47.619 0.00 0.00 0.00 2.92
5786 6286 4.398319 CCCACAGGTTCATCAAGTTTAGT 58.602 43.478 0.00 0.00 0.00 2.24
5896 6397 0.178964 CAGCAAAAGGGGGTGGAGAA 60.179 55.000 0.00 0.00 0.00 2.87
5903 6404 1.928868 ACTGAATCAGCAAAAGGGGG 58.071 50.000 10.62 0.00 34.37 5.40
6059 6560 3.805422 TCTTGTTGTTGCCTACTGTAACG 59.195 43.478 0.00 0.00 41.91 3.18
6069 6570 1.678101 ACTTGCTCTCTTGTTGTTGCC 59.322 47.619 0.00 0.00 0.00 4.52
6070 6571 3.427161 AACTTGCTCTCTTGTTGTTGC 57.573 42.857 0.00 0.00 0.00 4.17
6071 6572 6.974622 ACAATTAACTTGCTCTCTTGTTGTTG 59.025 34.615 0.00 0.00 38.50 3.33
6073 6574 6.095440 ACACAATTAACTTGCTCTCTTGTTGT 59.905 34.615 0.00 0.00 38.50 3.32
6112 6621 9.959749 TTCATAAAAGGTTTAAACAGTGACATC 57.040 29.630 19.57 0.20 0.00 3.06
6170 6679 6.459298 GCTGAGCAAGATTATAATGCAACAGT 60.459 38.462 22.43 4.42 42.66 3.55
6186 6695 4.093998 ACAATCGAAATACAGCTGAGCAAG 59.906 41.667 23.35 7.10 0.00 4.01
6187 6696 4.002982 ACAATCGAAATACAGCTGAGCAA 58.997 39.130 23.35 2.81 0.00 3.91
6189 6698 3.001736 GGACAATCGAAATACAGCTGAGC 59.998 47.826 23.35 0.00 0.00 4.26
6190 6699 3.243877 CGGACAATCGAAATACAGCTGAG 59.756 47.826 23.35 4.33 0.00 3.35
6242 6751 4.739046 GTGAAGACACATGAGTTTCCAG 57.261 45.455 0.00 0.00 45.32 3.86
6596 7105 5.070770 TGTTATCCATGGTTGCAATGAAC 57.929 39.130 12.58 4.44 0.00 3.18
6671 7187 6.071616 GGGAGTACATACATTTGCCTCAAAAA 60.072 38.462 0.00 0.00 36.90 1.94
6672 7188 5.417580 GGGAGTACATACATTTGCCTCAAAA 59.582 40.000 0.00 0.00 36.90 2.44
6673 7189 4.947388 GGGAGTACATACATTTGCCTCAAA 59.053 41.667 0.00 0.00 37.75 2.69
6674 7190 4.227300 AGGGAGTACATACATTTGCCTCAA 59.773 41.667 0.00 0.00 0.00 3.02
6675 7191 3.780294 AGGGAGTACATACATTTGCCTCA 59.220 43.478 0.00 0.00 0.00 3.86
6676 7192 4.381411 GAGGGAGTACATACATTTGCCTC 58.619 47.826 0.00 0.00 38.83 4.70
6677 7193 3.136626 GGAGGGAGTACATACATTTGCCT 59.863 47.826 0.00 0.00 31.82 4.75
6678 7194 3.477530 GGAGGGAGTACATACATTTGCC 58.522 50.000 0.00 0.00 0.00 4.52
6679 7195 3.131396 CGGAGGGAGTACATACATTTGC 58.869 50.000 0.00 0.00 0.00 3.68
6680 7196 4.369182 GACGGAGGGAGTACATACATTTG 58.631 47.826 0.00 0.00 0.00 2.32
6681 7197 3.387050 GGACGGAGGGAGTACATACATTT 59.613 47.826 0.00 0.00 0.00 2.32
6682 7198 2.963782 GGACGGAGGGAGTACATACATT 59.036 50.000 0.00 0.00 0.00 2.71
6683 7199 2.595238 GGACGGAGGGAGTACATACAT 58.405 52.381 0.00 0.00 0.00 2.29
6684 7200 1.748244 CGGACGGAGGGAGTACATACA 60.748 57.143 0.00 0.00 0.00 2.29
6685 7201 0.950116 CGGACGGAGGGAGTACATAC 59.050 60.000 0.00 0.00 0.00 2.39
6686 7202 0.839277 TCGGACGGAGGGAGTACATA 59.161 55.000 0.00 0.00 0.00 2.29
6687 7203 0.033796 TTCGGACGGAGGGAGTACAT 60.034 55.000 0.00 0.00 0.00 2.29
6688 7204 0.251297 TTTCGGACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
6689 7205 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
6690 7206 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
6691 7207 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
6692 7208 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
6693 7209 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
6694 7210 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
6695 7211 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
6696 7212 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
6697 7213 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
6703 7219 5.350365 TCCATTTCTCCGACAAGTATTTTCG 59.650 40.000 0.00 0.00 0.00 3.46
6704 7220 6.737254 TCCATTTCTCCGACAAGTATTTTC 57.263 37.500 0.00 0.00 0.00 2.29
6705 7221 8.801882 TTATCCATTTCTCCGACAAGTATTTT 57.198 30.769 0.00 0.00 0.00 1.82
6706 7222 8.801882 TTTATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
6707 7223 8.801882 TTTTATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
6708 7224 8.801882 TTTTTATCCATTTCTCCGACAAGTAT 57.198 30.769 0.00 0.00 0.00 2.12
6709 7225 8.673711 CATTTTTATCCATTTCTCCGACAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
6710 7226 7.362920 CCATTTTTATCCATTTCTCCGACAAGT 60.363 37.037 0.00 0.00 0.00 3.16
6711 7227 6.974622 CCATTTTTATCCATTTCTCCGACAAG 59.025 38.462 0.00 0.00 0.00 3.16
6712 7228 6.661377 TCCATTTTTATCCATTTCTCCGACAA 59.339 34.615 0.00 0.00 0.00 3.18
6713 7229 6.184068 TCCATTTTTATCCATTTCTCCGACA 58.816 36.000 0.00 0.00 0.00 4.35
6714 7230 6.693315 TCCATTTTTATCCATTTCTCCGAC 57.307 37.500 0.00 0.00 0.00 4.79
6715 7231 6.833416 ACATCCATTTTTATCCATTTCTCCGA 59.167 34.615 0.00 0.00 0.00 4.55
6716 7232 7.042797 ACATCCATTTTTATCCATTTCTCCG 57.957 36.000 0.00 0.00 0.00 4.63
6753 7269 9.915629 GGAGAAATGAATGTATCTAGACGTATT 57.084 33.333 0.00 0.00 0.00 1.89
6754 7270 8.237949 CGGAGAAATGAATGTATCTAGACGTAT 58.762 37.037 0.00 0.00 0.00 3.06
6755 7271 7.443272 TCGGAGAAATGAATGTATCTAGACGTA 59.557 37.037 0.00 0.00 0.00 3.57
6756 7272 6.262496 TCGGAGAAATGAATGTATCTAGACGT 59.738 38.462 0.00 0.00 0.00 4.34
6757 7273 6.669278 TCGGAGAAATGAATGTATCTAGACG 58.331 40.000 0.00 0.00 0.00 4.18
6766 7282 9.057089 GGAAATACTTATCGGAGAAATGAATGT 57.943 33.333 0.00 0.00 43.58 2.71
6767 7283 8.223769 CGGAAATACTTATCGGAGAAATGAATG 58.776 37.037 0.00 0.00 43.58 2.67
6768 7284 7.931948 ACGGAAATACTTATCGGAGAAATGAAT 59.068 33.333 0.00 0.00 43.58 2.57
6769 7285 7.270047 ACGGAAATACTTATCGGAGAAATGAA 58.730 34.615 0.00 0.00 43.58 2.57
6770 7286 6.812998 ACGGAAATACTTATCGGAGAAATGA 58.187 36.000 0.00 0.00 43.58 2.57
6771 7287 7.149015 CGTACGGAAATACTTATCGGAGAAATG 60.149 40.741 7.57 0.00 43.58 2.32
6772 7288 6.860023 CGTACGGAAATACTTATCGGAGAAAT 59.140 38.462 7.57 0.00 43.58 2.17
6773 7289 6.201517 CGTACGGAAATACTTATCGGAGAAA 58.798 40.000 7.57 0.00 43.58 2.52
6774 7290 5.277974 CCGTACGGAAATACTTATCGGAGAA 60.278 44.000 30.64 0.00 37.57 2.87
6775 7291 4.214119 CCGTACGGAAATACTTATCGGAGA 59.786 45.833 30.64 0.00 38.34 3.71
6776 7292 4.214119 TCCGTACGGAAATACTTATCGGAG 59.786 45.833 33.96 2.10 42.05 4.63
6777 7293 4.133820 TCCGTACGGAAATACTTATCGGA 58.866 43.478 33.96 6.50 42.05 4.55
6778 7294 4.470462 CTCCGTACGGAAATACTTATCGG 58.530 47.826 34.77 16.58 44.66 4.18
6779 7295 4.470462 CCTCCGTACGGAAATACTTATCG 58.530 47.826 34.77 19.73 44.66 2.92
6780 7296 4.520492 TCCCTCCGTACGGAAATACTTATC 59.480 45.833 34.77 0.00 44.66 1.75
6781 7297 4.473444 TCCCTCCGTACGGAAATACTTAT 58.527 43.478 34.77 0.00 44.66 1.73
6782 7298 3.885297 CTCCCTCCGTACGGAAATACTTA 59.115 47.826 34.77 16.25 44.66 2.24
6783 7299 2.692041 CTCCCTCCGTACGGAAATACTT 59.308 50.000 34.77 0.00 44.66 2.24
6784 7300 2.305009 CTCCCTCCGTACGGAAATACT 58.695 52.381 34.77 0.00 44.66 2.12
6785 7301 2.027385 ACTCCCTCCGTACGGAAATAC 58.973 52.381 34.77 0.00 44.66 1.89
6786 7302 2.442236 ACTCCCTCCGTACGGAAATA 57.558 50.000 34.77 21.70 44.66 1.40
6787 7303 2.027385 GTACTCCCTCCGTACGGAAAT 58.973 52.381 34.77 20.78 44.66 2.17
6788 7304 1.004745 AGTACTCCCTCCGTACGGAAA 59.995 52.381 34.77 22.33 44.66 3.13
6789 7305 0.620556 AGTACTCCCTCCGTACGGAA 59.379 55.000 34.77 21.09 44.66 4.30
6790 7306 1.496060 TAGTACTCCCTCCGTACGGA 58.504 55.000 33.55 33.55 41.51 4.69
6791 7307 2.557920 ATAGTACTCCCTCCGTACGG 57.442 55.000 28.66 28.66 41.51 4.02
6792 7308 4.907879 AAAATAGTACTCCCTCCGTACG 57.092 45.455 8.69 8.69 41.51 3.67
6793 7309 6.951062 ACTAAAATAGTACTCCCTCCGTAC 57.049 41.667 0.00 0.00 37.23 3.67
6794 7310 7.961326 AAACTAAAATAGTACTCCCTCCGTA 57.039 36.000 0.00 0.00 38.26 4.02
6795 7311 6.864151 AAACTAAAATAGTACTCCCTCCGT 57.136 37.500 0.00 0.00 38.26 4.69
6859 7375 4.201910 CCCAGTTACAAGTGAAATATGCGG 60.202 45.833 0.00 0.00 0.00 5.69
6860 7376 4.730613 GCCCAGTTACAAGTGAAATATGCG 60.731 45.833 0.00 0.00 0.00 4.73
6917 7433 3.047877 CCACGCGGGGTTCTGTTC 61.048 66.667 22.33 0.00 0.00 3.18
7025 7542 1.964373 GTGGAAATCCCGTGTGCGT 60.964 57.895 0.00 0.00 37.93 5.24
7160 7686 1.006639 GGATTTAGGGTTTGGGGAGCA 59.993 52.381 0.00 0.00 0.00 4.26
7202 7735 1.703461 GGATGGGTTTGATGGGGGT 59.297 57.895 0.00 0.00 0.00 4.95
7203 7736 1.075301 GGGATGGGTTTGATGGGGG 60.075 63.158 0.00 0.00 0.00 5.40
7204 7737 1.455587 CGGGATGGGTTTGATGGGG 60.456 63.158 0.00 0.00 0.00 4.96
7205 7738 2.127232 GCGGGATGGGTTTGATGGG 61.127 63.158 0.00 0.00 0.00 4.00
7206 7739 2.127232 GGCGGGATGGGTTTGATGG 61.127 63.158 0.00 0.00 0.00 3.51
7207 7740 2.127232 GGGCGGGATGGGTTTGATG 61.127 63.158 0.00 0.00 0.00 3.07
7208 7741 2.278738 GGGCGGGATGGGTTTGAT 59.721 61.111 0.00 0.00 0.00 2.57
7209 7742 2.938798 AGGGCGGGATGGGTTTGA 60.939 61.111 0.00 0.00 0.00 2.69
7210 7743 2.440247 GAGGGCGGGATGGGTTTG 60.440 66.667 0.00 0.00 0.00 2.93
7211 7744 4.109675 CGAGGGCGGGATGGGTTT 62.110 66.667 0.00 0.00 0.00 3.27
7218 7751 3.476419 GGGAAATCGAGGGCGGGA 61.476 66.667 0.00 0.00 38.28 5.14
7224 7757 1.152963 ATTGGGCGGGAAATCGAGG 60.153 57.895 0.00 0.00 0.00 4.63
7418 7959 4.169068 AGCTAGGGTTAGATCTCTCCTTCA 59.831 45.833 14.20 0.89 0.00 3.02
7419 7960 4.736473 AGCTAGGGTTAGATCTCTCCTTC 58.264 47.826 14.20 8.69 0.00 3.46
7420 7961 4.448640 GGAGCTAGGGTTAGATCTCTCCTT 60.449 50.000 14.20 10.17 41.12 3.36
7423 7964 3.078837 CGGAGCTAGGGTTAGATCTCTC 58.921 54.545 0.00 0.00 41.12 3.20
7659 8206 1.432657 GTAGCGGAGAAGGACGTCC 59.567 63.158 27.67 27.67 0.00 4.79
7668 8215 2.360726 TGCGTGAGGTAGCGGAGA 60.361 61.111 0.00 0.00 35.87 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.