Multiple sequence alignment - TraesCS5D01G089200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G089200 chr5D 100.000 3327 0 0 1 3327 95883252 95879926 0.000000e+00 6144
1 TraesCS5D01G089200 chr5D 85.294 306 38 7 2695 2995 554920911 554920608 3.220000e-80 309
2 TraesCS5D01G089200 chr5B 92.110 2294 106 37 384 2653 102607986 102605744 0.000000e+00 3164
3 TraesCS5D01G089200 chr5B 91.720 628 27 6 2725 3327 102605782 102605155 0.000000e+00 848
4 TraesCS5D01G089200 chr5A 93.131 1849 54 29 384 2194 90929448 90927635 0.000000e+00 2643
5 TraesCS5D01G089200 chr5A 94.012 668 28 8 2669 3327 90927217 90926553 0.000000e+00 1002
6 TraesCS5D01G089200 chr5A 84.553 492 29 18 2179 2659 90927617 90927162 8.470000e-121 444
7 TraesCS5D01G089200 chr1B 78.462 520 78 15 1568 2078 73043028 73043522 3.220000e-80 309
8 TraesCS5D01G089200 chr1B 85.876 177 23 2 1297 1473 73042670 73042844 1.580000e-43 187
9 TraesCS5D01G089200 chr4A 84.142 309 39 6 2692 2995 613865659 613865962 1.170000e-74 291
10 TraesCS5D01G089200 chr4A 77.737 274 45 8 1268 1540 613861972 613862230 1.600000e-33 154
11 TraesCS5D01G089200 chr7A 81.250 368 48 4 1713 2078 697984003 697983655 9.090000e-71 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G089200 chr5D 95879926 95883252 3326 True 6144.0 6144 100.000000 1 3327 1 chr5D.!!$R1 3326
1 TraesCS5D01G089200 chr5B 102605155 102607986 2831 True 2006.0 3164 91.915000 384 3327 2 chr5B.!!$R1 2943
2 TraesCS5D01G089200 chr5A 90926553 90929448 2895 True 1363.0 2643 90.565333 384 3327 3 chr5A.!!$R1 2943
3 TraesCS5D01G089200 chr1B 73042670 73043522 852 False 248.0 309 82.169000 1297 2078 2 chr1B.!!$F1 781
4 TraesCS5D01G089200 chr4A 613861972 613865962 3990 False 222.5 291 80.939500 1268 2995 2 chr4A.!!$F1 1727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.037734 CCAAAGGCGGTTAGGGTTCT 59.962 55.0 0.0 0.0 0.00 3.01 F
218 219 0.249120 TACGCTGTGGGACTGGATTG 59.751 55.0 0.0 0.0 0.00 2.67 F
1029 1082 0.172578 TGCTCATTGCTCATTGCTGC 59.827 50.0 0.0 0.0 43.37 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1030 1083 0.103208 GTGATAGAGGTCGGGCACAG 59.897 60.0 0.0 0.0 0.00 3.66 R
1050 1103 0.302288 CGCGAGTCTCTTCCTACGAG 59.698 60.0 0.0 0.0 0.00 4.18 R
2979 5718 0.250234 ACCGCTATGCACAGTCATGT 59.750 50.0 0.0 0.0 41.57 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.985188 TCATTAGTTAAGCTGATTTTCGCT 57.015 33.333 0.00 0.00 38.30 4.93
27 28 7.243487 TCATTAGTTAAGCTGATTTTCGCTTG 58.757 34.615 6.76 0.00 45.31 4.01
28 29 6.795098 TTAGTTAAGCTGATTTTCGCTTGA 57.205 33.333 6.76 0.00 45.31 3.02
29 30 5.035784 AGTTAAGCTGATTTTCGCTTGAC 57.964 39.130 9.89 9.89 46.71 3.18
30 31 5.035784 GTTAAGCTGATTTTCGCTTGACT 57.964 39.130 10.43 0.00 44.47 3.41
31 32 6.165659 GTTAAGCTGATTTTCGCTTGACTA 57.834 37.500 10.43 0.00 44.47 2.59
32 33 6.599437 GTTAAGCTGATTTTCGCTTGACTAA 58.401 36.000 10.43 0.00 44.47 2.24
33 34 4.670227 AGCTGATTTTCGCTTGACTAAC 57.330 40.909 0.00 0.00 31.17 2.34
34 35 4.065088 AGCTGATTTTCGCTTGACTAACA 58.935 39.130 0.00 0.00 31.17 2.41
35 36 4.515191 AGCTGATTTTCGCTTGACTAACAA 59.485 37.500 0.00 0.00 36.97 2.83
36 37 5.008613 AGCTGATTTTCGCTTGACTAACAAA 59.991 36.000 0.00 0.00 38.08 2.83
37 38 5.685511 GCTGATTTTCGCTTGACTAACAAAA 59.314 36.000 0.00 0.00 38.08 2.44
38 39 6.198216 GCTGATTTTCGCTTGACTAACAAAAA 59.802 34.615 0.00 0.00 38.08 1.94
39 40 7.565789 GCTGATTTTCGCTTGACTAACAAAAAG 60.566 37.037 0.00 0.00 38.08 2.27
40 41 6.695278 TGATTTTCGCTTGACTAACAAAAAGG 59.305 34.615 0.00 0.00 38.08 3.11
41 42 5.821516 TTTCGCTTGACTAACAAAAAGGA 57.178 34.783 0.00 0.00 38.08 3.36
42 43 5.418310 TTCGCTTGACTAACAAAAAGGAG 57.582 39.130 0.00 0.00 38.08 3.69
43 44 4.699637 TCGCTTGACTAACAAAAAGGAGA 58.300 39.130 0.00 0.00 38.08 3.71
44 45 4.750098 TCGCTTGACTAACAAAAAGGAGAG 59.250 41.667 0.00 0.00 38.08 3.20
45 46 4.750098 CGCTTGACTAACAAAAAGGAGAGA 59.250 41.667 0.00 0.00 38.08 3.10
46 47 5.107298 CGCTTGACTAACAAAAAGGAGAGAG 60.107 44.000 0.00 0.00 38.08 3.20
47 48 5.992217 GCTTGACTAACAAAAAGGAGAGAGA 59.008 40.000 0.00 0.00 38.08 3.10
48 49 6.483640 GCTTGACTAACAAAAAGGAGAGAGAA 59.516 38.462 0.00 0.00 38.08 2.87
49 50 7.519168 GCTTGACTAACAAAAAGGAGAGAGAAC 60.519 40.741 0.00 0.00 38.08 3.01
50 51 6.289064 TGACTAACAAAAAGGAGAGAGAACC 58.711 40.000 0.00 0.00 0.00 3.62
51 52 6.099845 TGACTAACAAAAAGGAGAGAGAACCT 59.900 38.462 0.00 0.00 38.23 3.50
52 53 6.292150 ACTAACAAAAAGGAGAGAGAACCTG 58.708 40.000 0.00 0.00 36.56 4.00
53 54 5.373812 AACAAAAAGGAGAGAGAACCTGA 57.626 39.130 0.00 0.00 36.56 3.86
54 55 4.709250 ACAAAAAGGAGAGAGAACCTGAC 58.291 43.478 0.00 0.00 36.56 3.51
55 56 4.410555 ACAAAAAGGAGAGAGAACCTGACT 59.589 41.667 0.00 0.00 36.56 3.41
56 57 5.104318 ACAAAAAGGAGAGAGAACCTGACTT 60.104 40.000 0.00 0.00 36.56 3.01
57 58 4.615588 AAAGGAGAGAGAACCTGACTTG 57.384 45.455 0.00 0.00 36.56 3.16
58 59 2.534990 AGGAGAGAGAACCTGACTTGG 58.465 52.381 0.00 0.00 34.99 3.61
59 60 2.158234 AGGAGAGAGAACCTGACTTGGT 60.158 50.000 0.00 0.00 43.11 3.67
60 61 2.028567 GGAGAGAGAACCTGACTTGGTG 60.029 54.545 0.00 0.00 40.73 4.17
61 62 2.894126 GAGAGAGAACCTGACTTGGTGA 59.106 50.000 0.00 0.00 40.73 4.02
62 63 2.630580 AGAGAGAACCTGACTTGGTGAC 59.369 50.000 0.00 0.00 40.73 3.67
63 64 2.365617 GAGAGAACCTGACTTGGTGACA 59.634 50.000 0.00 0.00 40.73 3.58
64 65 2.103263 AGAGAACCTGACTTGGTGACAC 59.897 50.000 0.00 0.00 42.67 3.67
65 66 1.837439 AGAACCTGACTTGGTGACACA 59.163 47.619 8.08 0.00 42.67 3.72
66 67 2.238646 AGAACCTGACTTGGTGACACAA 59.761 45.455 8.08 0.00 42.67 3.33
77 78 3.470567 GACACAAGTCGCGAGCGG 61.471 66.667 10.24 3.83 40.25 5.52
78 79 3.891586 GACACAAGTCGCGAGCGGA 62.892 63.158 10.24 1.70 40.25 5.54
79 80 3.175240 CACAAGTCGCGAGCGGAG 61.175 66.667 10.24 0.06 40.25 4.63
80 81 3.362797 ACAAGTCGCGAGCGGAGA 61.363 61.111 10.24 0.00 40.25 3.71
81 82 2.578178 CAAGTCGCGAGCGGAGAG 60.578 66.667 10.24 2.43 40.25 3.20
82 83 2.746671 AAGTCGCGAGCGGAGAGA 60.747 61.111 10.24 0.00 40.25 3.10
83 84 2.756025 AAGTCGCGAGCGGAGAGAG 61.756 63.158 10.24 0.00 40.25 3.20
84 85 3.501548 GTCGCGAGCGGAGAGAGT 61.502 66.667 10.24 0.00 40.25 3.24
85 86 2.746671 TCGCGAGCGGAGAGAGTT 60.747 61.111 17.68 0.00 40.25 3.01
86 87 2.179517 CGCGAGCGGAGAGAGTTT 59.820 61.111 9.90 0.00 35.56 2.66
87 88 1.870016 CGCGAGCGGAGAGAGTTTC 60.870 63.158 9.90 0.00 35.56 2.78
88 89 1.509004 GCGAGCGGAGAGAGTTTCT 59.491 57.895 0.00 0.00 39.43 2.52
89 90 0.733729 GCGAGCGGAGAGAGTTTCTA 59.266 55.000 0.00 0.00 35.87 2.10
90 91 1.268335 GCGAGCGGAGAGAGTTTCTAG 60.268 57.143 0.00 0.00 35.87 2.43
91 92 1.332375 CGAGCGGAGAGAGTTTCTAGG 59.668 57.143 0.00 0.00 35.87 3.02
92 93 1.679153 GAGCGGAGAGAGTTTCTAGGG 59.321 57.143 0.00 0.00 35.87 3.53
93 94 0.103390 GCGGAGAGAGTTTCTAGGGC 59.897 60.000 0.00 0.00 35.87 5.19
94 95 1.475403 CGGAGAGAGTTTCTAGGGCA 58.525 55.000 0.00 0.00 35.87 5.36
95 96 2.035632 CGGAGAGAGTTTCTAGGGCAT 58.964 52.381 0.00 0.00 35.87 4.40
96 97 2.223923 CGGAGAGAGTTTCTAGGGCATG 60.224 54.545 0.00 0.00 35.87 4.06
97 98 2.484594 GGAGAGAGTTTCTAGGGCATGC 60.485 54.545 9.90 9.90 35.87 4.06
98 99 2.169352 GAGAGAGTTTCTAGGGCATGCA 59.831 50.000 21.36 0.00 35.87 3.96
99 100 2.776536 AGAGAGTTTCTAGGGCATGCAT 59.223 45.455 21.36 10.08 33.23 3.96
100 101 2.877168 GAGAGTTTCTAGGGCATGCATG 59.123 50.000 22.70 22.70 0.00 4.06
111 112 2.355797 CATGCATGCAAACAGACGC 58.644 52.632 26.68 0.00 0.00 5.19
112 113 0.387494 CATGCATGCAAACAGACGCA 60.387 50.000 26.68 0.00 43.45 5.24
113 114 0.314618 ATGCATGCAAACAGACGCAA 59.685 45.000 26.68 0.00 42.37 4.85
114 115 0.318022 TGCATGCAAACAGACGCAAG 60.318 50.000 20.30 0.00 42.37 4.01
115 116 1.611592 GCATGCAAACAGACGCAAGC 61.612 55.000 14.21 0.00 44.32 4.01
116 117 1.005294 CATGCAAACAGACGCAAGCC 61.005 55.000 0.00 0.00 42.37 4.35
117 118 1.454572 ATGCAAACAGACGCAAGCCA 61.455 50.000 0.00 0.00 42.37 4.75
118 119 1.065600 GCAAACAGACGCAAGCCAA 59.934 52.632 0.00 0.00 45.62 4.52
119 120 0.527385 GCAAACAGACGCAAGCCAAA 60.527 50.000 0.00 0.00 45.62 3.28
120 121 1.480205 CAAACAGACGCAAGCCAAAG 58.520 50.000 0.00 0.00 45.62 2.77
121 122 0.385390 AAACAGACGCAAGCCAAAGG 59.615 50.000 0.00 0.00 45.62 3.11
131 132 2.035155 GCCAAAGGCGGTTAGGGT 59.965 61.111 0.00 0.00 39.62 4.34
132 133 1.605451 GCCAAAGGCGGTTAGGGTT 60.605 57.895 0.00 0.00 39.62 4.11
133 134 1.592400 GCCAAAGGCGGTTAGGGTTC 61.592 60.000 0.00 0.00 39.62 3.62
134 135 0.037734 CCAAAGGCGGTTAGGGTTCT 59.962 55.000 0.00 0.00 0.00 3.01
135 136 1.546998 CCAAAGGCGGTTAGGGTTCTT 60.547 52.381 0.00 0.00 0.00 2.52
136 137 2.235891 CAAAGGCGGTTAGGGTTCTTT 58.764 47.619 0.00 0.00 0.00 2.52
137 138 2.195741 AAGGCGGTTAGGGTTCTTTC 57.804 50.000 0.00 0.00 0.00 2.62
138 139 1.359168 AGGCGGTTAGGGTTCTTTCT 58.641 50.000 0.00 0.00 0.00 2.52
139 140 2.543635 AGGCGGTTAGGGTTCTTTCTA 58.456 47.619 0.00 0.00 0.00 2.10
140 141 3.113043 AGGCGGTTAGGGTTCTTTCTAT 58.887 45.455 0.00 0.00 0.00 1.98
141 142 3.118371 AGGCGGTTAGGGTTCTTTCTATG 60.118 47.826 0.00 0.00 0.00 2.23
142 143 3.370209 GGCGGTTAGGGTTCTTTCTATGT 60.370 47.826 0.00 0.00 0.00 2.29
143 144 4.259356 GCGGTTAGGGTTCTTTCTATGTT 58.741 43.478 0.00 0.00 0.00 2.71
144 145 4.094442 GCGGTTAGGGTTCTTTCTATGTTG 59.906 45.833 0.00 0.00 0.00 3.33
145 146 4.094442 CGGTTAGGGTTCTTTCTATGTTGC 59.906 45.833 0.00 0.00 0.00 4.17
146 147 4.398358 GGTTAGGGTTCTTTCTATGTTGCC 59.602 45.833 0.00 0.00 0.00 4.52
147 148 3.806949 AGGGTTCTTTCTATGTTGCCA 57.193 42.857 0.00 0.00 0.00 4.92
148 149 4.322057 AGGGTTCTTTCTATGTTGCCAT 57.678 40.909 0.00 0.00 34.97 4.40
149 150 4.273318 AGGGTTCTTTCTATGTTGCCATC 58.727 43.478 0.00 0.00 32.29 3.51
150 151 3.381590 GGGTTCTTTCTATGTTGCCATCC 59.618 47.826 0.00 0.00 32.29 3.51
151 152 3.381590 GGTTCTTTCTATGTTGCCATCCC 59.618 47.826 0.00 0.00 32.29 3.85
152 153 4.273318 GTTCTTTCTATGTTGCCATCCCT 58.727 43.478 0.00 0.00 32.29 4.20
153 154 4.156455 TCTTTCTATGTTGCCATCCCTC 57.844 45.455 0.00 0.00 32.29 4.30
154 155 3.117888 TCTTTCTATGTTGCCATCCCTCC 60.118 47.826 0.00 0.00 32.29 4.30
155 156 2.196742 TCTATGTTGCCATCCCTCCT 57.803 50.000 0.00 0.00 32.29 3.69
156 157 2.050144 TCTATGTTGCCATCCCTCCTC 58.950 52.381 0.00 0.00 32.29 3.71
157 158 1.072965 CTATGTTGCCATCCCTCCTCC 59.927 57.143 0.00 0.00 32.29 4.30
158 159 1.987807 ATGTTGCCATCCCTCCTCCG 61.988 60.000 0.00 0.00 0.00 4.63
159 160 2.040442 TTGCCATCCCTCCTCCGA 59.960 61.111 0.00 0.00 0.00 4.55
160 161 1.615124 TTGCCATCCCTCCTCCGAA 60.615 57.895 0.00 0.00 0.00 4.30
161 162 0.988145 TTGCCATCCCTCCTCCGAAT 60.988 55.000 0.00 0.00 0.00 3.34
162 163 1.072159 GCCATCCCTCCTCCGAATG 59.928 63.158 0.00 0.00 0.00 2.67
163 164 1.700042 GCCATCCCTCCTCCGAATGT 61.700 60.000 0.00 0.00 0.00 2.71
164 165 1.717032 CCATCCCTCCTCCGAATGTA 58.283 55.000 0.00 0.00 0.00 2.29
165 166 1.620819 CCATCCCTCCTCCGAATGTAG 59.379 57.143 0.00 0.00 0.00 2.74
166 167 1.620819 CATCCCTCCTCCGAATGTAGG 59.379 57.143 0.00 0.00 0.00 3.18
167 168 0.759436 TCCCTCCTCCGAATGTAGGC 60.759 60.000 0.00 0.00 32.55 3.93
168 169 1.749033 CCTCCTCCGAATGTAGGCC 59.251 63.158 0.00 0.00 32.55 5.19
169 170 1.749033 CTCCTCCGAATGTAGGCCC 59.251 63.158 0.00 0.00 32.55 5.80
170 171 2.088674 CTCCTCCGAATGTAGGCCCG 62.089 65.000 0.00 0.00 32.55 6.13
171 172 2.131709 CCTCCGAATGTAGGCCCGA 61.132 63.158 0.00 0.00 0.00 5.14
172 173 1.682451 CCTCCGAATGTAGGCCCGAA 61.682 60.000 0.00 0.00 0.00 4.30
173 174 0.249489 CTCCGAATGTAGGCCCGAAG 60.249 60.000 0.00 0.00 0.00 3.79
174 175 1.887707 CCGAATGTAGGCCCGAAGC 60.888 63.158 0.00 0.00 42.60 3.86
175 176 1.144057 CGAATGTAGGCCCGAAGCT 59.856 57.895 0.00 0.00 43.05 3.74
176 177 0.462047 CGAATGTAGGCCCGAAGCTT 60.462 55.000 0.00 0.00 43.05 3.74
177 178 1.751437 GAATGTAGGCCCGAAGCTTT 58.249 50.000 0.00 0.00 43.05 3.51
178 179 2.092323 GAATGTAGGCCCGAAGCTTTT 58.908 47.619 0.00 0.00 43.05 2.27
179 180 2.215942 ATGTAGGCCCGAAGCTTTTT 57.784 45.000 0.00 0.00 43.05 1.94
196 197 2.907917 TTTTTCGGCCCGGTGGTG 60.908 61.111 1.90 0.00 0.00 4.17
197 198 3.717924 TTTTTCGGCCCGGTGGTGT 62.718 57.895 1.90 0.00 0.00 4.16
198 199 4.939368 TTTCGGCCCGGTGGTGTG 62.939 66.667 1.90 0.00 0.00 3.82
204 205 3.998672 CCCGGTGGTGTGTACGCT 61.999 66.667 8.10 0.00 0.00 5.07
205 206 2.736995 CCGGTGGTGTGTACGCTG 60.737 66.667 8.10 0.00 0.00 5.18
206 207 2.028484 CGGTGGTGTGTACGCTGT 59.972 61.111 8.10 0.00 0.00 4.40
207 208 2.307309 CGGTGGTGTGTACGCTGTG 61.307 63.158 8.10 0.00 0.00 3.66
208 209 1.959226 GGTGGTGTGTACGCTGTGG 60.959 63.158 8.10 0.00 0.00 4.17
209 210 1.959226 GTGGTGTGTACGCTGTGGG 60.959 63.158 8.10 0.00 0.00 4.61
210 211 2.134933 TGGTGTGTACGCTGTGGGA 61.135 57.895 8.10 0.00 0.00 4.37
211 212 1.666872 GGTGTGTACGCTGTGGGAC 60.667 63.158 8.10 0.00 0.00 4.46
212 213 1.366366 GTGTGTACGCTGTGGGACT 59.634 57.895 8.10 0.00 0.00 3.85
213 214 0.944311 GTGTGTACGCTGTGGGACTG 60.944 60.000 8.10 0.00 0.00 3.51
214 215 1.374252 GTGTACGCTGTGGGACTGG 60.374 63.158 0.00 0.00 0.00 4.00
215 216 1.532078 TGTACGCTGTGGGACTGGA 60.532 57.895 0.00 0.00 0.00 3.86
216 217 0.902984 TGTACGCTGTGGGACTGGAT 60.903 55.000 0.00 0.00 0.00 3.41
217 218 0.249398 GTACGCTGTGGGACTGGATT 59.751 55.000 0.00 0.00 0.00 3.01
218 219 0.249120 TACGCTGTGGGACTGGATTG 59.751 55.000 0.00 0.00 0.00 2.67
219 220 1.003355 CGCTGTGGGACTGGATTGT 60.003 57.895 0.00 0.00 0.00 2.71
220 221 0.249120 CGCTGTGGGACTGGATTGTA 59.751 55.000 0.00 0.00 0.00 2.41
221 222 1.134401 CGCTGTGGGACTGGATTGTAT 60.134 52.381 0.00 0.00 0.00 2.29
222 223 2.680805 CGCTGTGGGACTGGATTGTATT 60.681 50.000 0.00 0.00 0.00 1.89
223 224 3.356290 GCTGTGGGACTGGATTGTATTT 58.644 45.455 0.00 0.00 0.00 1.40
224 225 3.378427 GCTGTGGGACTGGATTGTATTTC 59.622 47.826 0.00 0.00 0.00 2.17
225 226 3.947834 CTGTGGGACTGGATTGTATTTCC 59.052 47.826 0.00 0.00 0.00 3.13
226 227 3.591527 TGTGGGACTGGATTGTATTTCCT 59.408 43.478 0.00 0.00 34.17 3.36
227 228 4.044065 TGTGGGACTGGATTGTATTTCCTT 59.956 41.667 0.00 0.00 34.17 3.36
228 229 5.016831 GTGGGACTGGATTGTATTTCCTTT 58.983 41.667 0.00 0.00 34.17 3.11
229 230 5.480422 GTGGGACTGGATTGTATTTCCTTTT 59.520 40.000 0.00 0.00 34.17 2.27
230 231 6.014584 GTGGGACTGGATTGTATTTCCTTTTT 60.015 38.462 0.00 0.00 34.17 1.94
286 287 9.982291 TTTTGATTAATAAAGAGTTTCGGATCG 57.018 29.630 0.00 0.00 0.00 3.69
287 288 8.712285 TTGATTAATAAAGAGTTTCGGATCGT 57.288 30.769 0.00 0.00 0.00 3.73
288 289 8.712285 TGATTAATAAAGAGTTTCGGATCGTT 57.288 30.769 0.00 0.00 0.00 3.85
289 290 8.814235 TGATTAATAAAGAGTTTCGGATCGTTC 58.186 33.333 0.00 0.00 0.00 3.95
290 291 5.697848 AATAAAGAGTTTCGGATCGTTCG 57.302 39.130 0.00 0.00 0.00 3.95
291 292 1.347320 AAGAGTTTCGGATCGTTCGC 58.653 50.000 0.00 0.00 0.00 4.70
292 293 0.458025 AGAGTTTCGGATCGTTCGCC 60.458 55.000 0.00 0.00 0.00 5.54
293 294 1.419107 GAGTTTCGGATCGTTCGCCC 61.419 60.000 0.00 0.00 0.00 6.13
294 295 1.738830 GTTTCGGATCGTTCGCCCA 60.739 57.895 0.00 0.00 0.00 5.36
295 296 1.004799 TTTCGGATCGTTCGCCCAA 60.005 52.632 0.00 0.00 0.00 4.12
296 297 0.603172 TTTCGGATCGTTCGCCCAAA 60.603 50.000 0.00 0.00 0.00 3.28
297 298 0.603172 TTCGGATCGTTCGCCCAAAA 60.603 50.000 0.00 0.00 0.00 2.44
298 299 0.603172 TCGGATCGTTCGCCCAAAAA 60.603 50.000 0.00 0.00 0.00 1.94
328 329 8.973182 TGTTAAAGTAAAACATGGGATATTCCC 58.027 33.333 5.59 5.59 43.12 3.97
359 360 6.894339 AAAAAGTAAAACATGGGATCGAGT 57.106 33.333 0.00 0.00 0.00 4.18
360 361 5.880054 AAAGTAAAACATGGGATCGAGTG 57.120 39.130 0.00 0.00 0.00 3.51
361 362 3.873910 AGTAAAACATGGGATCGAGTGG 58.126 45.455 0.00 0.00 0.00 4.00
362 363 2.128771 AAAACATGGGATCGAGTGGG 57.871 50.000 0.00 0.00 0.00 4.61
363 364 0.991920 AAACATGGGATCGAGTGGGT 59.008 50.000 0.00 0.00 0.00 4.51
364 365 1.874129 AACATGGGATCGAGTGGGTA 58.126 50.000 0.00 0.00 0.00 3.69
365 366 1.874129 ACATGGGATCGAGTGGGTAA 58.126 50.000 0.00 0.00 0.00 2.85
366 367 2.193127 ACATGGGATCGAGTGGGTAAA 58.807 47.619 0.00 0.00 0.00 2.01
367 368 2.574369 ACATGGGATCGAGTGGGTAAAA 59.426 45.455 0.00 0.00 0.00 1.52
368 369 3.202151 ACATGGGATCGAGTGGGTAAAAT 59.798 43.478 0.00 0.00 0.00 1.82
369 370 4.410883 ACATGGGATCGAGTGGGTAAAATA 59.589 41.667 0.00 0.00 0.00 1.40
370 371 5.104277 ACATGGGATCGAGTGGGTAAAATAA 60.104 40.000 0.00 0.00 0.00 1.40
371 372 4.773013 TGGGATCGAGTGGGTAAAATAAC 58.227 43.478 0.00 0.00 0.00 1.89
372 373 4.472108 TGGGATCGAGTGGGTAAAATAACT 59.528 41.667 0.00 0.00 0.00 2.24
373 374 5.045432 TGGGATCGAGTGGGTAAAATAACTT 60.045 40.000 0.00 0.00 0.00 2.66
374 375 5.296035 GGGATCGAGTGGGTAAAATAACTTG 59.704 44.000 0.00 0.00 0.00 3.16
375 376 5.878669 GGATCGAGTGGGTAAAATAACTTGT 59.121 40.000 0.00 0.00 0.00 3.16
376 377 6.183360 GGATCGAGTGGGTAAAATAACTTGTG 60.183 42.308 0.00 0.00 0.00 3.33
377 378 5.856156 TCGAGTGGGTAAAATAACTTGTGA 58.144 37.500 0.00 0.00 0.00 3.58
378 379 6.469410 TCGAGTGGGTAAAATAACTTGTGAT 58.531 36.000 0.00 0.00 0.00 3.06
379 380 6.370442 TCGAGTGGGTAAAATAACTTGTGATG 59.630 38.462 0.00 0.00 0.00 3.07
380 381 6.267496 AGTGGGTAAAATAACTTGTGATGC 57.733 37.500 0.00 0.00 0.00 3.91
381 382 5.772672 AGTGGGTAAAATAACTTGTGATGCA 59.227 36.000 0.00 0.00 0.00 3.96
382 383 6.266558 AGTGGGTAAAATAACTTGTGATGCAA 59.733 34.615 0.00 0.00 35.50 4.08
391 392 2.404265 TTGTGATGCAAGAAACGCAG 57.596 45.000 0.00 0.00 43.88 5.18
552 557 1.897137 CTGCATGCATCCATCGCCT 60.897 57.895 22.97 0.00 0.00 5.52
624 632 3.251004 TGCGCCTCTCTTCTTTTCTTTTC 59.749 43.478 4.18 0.00 0.00 2.29
625 633 3.500299 GCGCCTCTCTTCTTTTCTTTTCT 59.500 43.478 0.00 0.00 0.00 2.52
626 634 4.023622 GCGCCTCTCTTCTTTTCTTTTCTT 60.024 41.667 0.00 0.00 0.00 2.52
627 635 5.506483 GCGCCTCTCTTCTTTTCTTTTCTTT 60.506 40.000 0.00 0.00 0.00 2.52
628 636 6.499172 CGCCTCTCTTCTTTTCTTTTCTTTT 58.501 36.000 0.00 0.00 0.00 2.27
629 637 6.975197 CGCCTCTCTTCTTTTCTTTTCTTTTT 59.025 34.615 0.00 0.00 0.00 1.94
663 671 2.819608 ACACAATGCGCCTCTTTTGTAT 59.180 40.909 4.18 0.00 0.00 2.29
704 720 4.916870 ACGGAAAGAAAAGGAAAGAAACG 58.083 39.130 0.00 0.00 0.00 3.60
706 722 4.497507 CGGAAAGAAAAGGAAAGAAACGCT 60.498 41.667 0.00 0.00 0.00 5.07
715 751 1.606350 AAAGAAACGCTCGCTCGTCG 61.606 55.000 2.50 0.00 42.46 5.12
750 786 7.334421 TGGCGATGATTAATTTCTAGCCTAATC 59.666 37.037 17.52 0.00 42.25 1.75
751 787 7.334421 GGCGATGATTAATTTCTAGCCTAATCA 59.666 37.037 13.36 13.36 42.13 2.57
776 812 5.943706 ACTCGCACACAGTACTATATAGG 57.056 43.478 14.25 0.00 0.00 2.57
777 813 5.618236 ACTCGCACACAGTACTATATAGGA 58.382 41.667 14.25 2.17 0.00 2.94
778 814 5.701750 ACTCGCACACAGTACTATATAGGAG 59.298 44.000 14.25 8.70 0.00 3.69
779 815 5.618236 TCGCACACAGTACTATATAGGAGT 58.382 41.667 14.25 5.57 0.00 3.85
780 816 6.762333 TCGCACACAGTACTATATAGGAGTA 58.238 40.000 14.25 0.00 0.00 2.59
781 817 7.392418 TCGCACACAGTACTATATAGGAGTAT 58.608 38.462 14.25 0.00 32.21 2.12
782 818 8.534496 TCGCACACAGTACTATATAGGAGTATA 58.466 37.037 14.25 0.00 32.21 1.47
783 819 9.327628 CGCACACAGTACTATATAGGAGTATAT 57.672 37.037 14.25 0.00 36.12 0.86
822 862 0.984230 TGGATTGCTTCTTCTCCGGT 59.016 50.000 0.00 0.00 0.00 5.28
823 863 1.066143 TGGATTGCTTCTTCTCCGGTC 60.066 52.381 0.00 0.00 0.00 4.79
824 864 1.657822 GATTGCTTCTTCTCCGGTCC 58.342 55.000 0.00 0.00 0.00 4.46
838 878 1.395826 CGGTCCTCCTCCTGTCCATC 61.396 65.000 0.00 0.00 0.00 3.51
905 945 1.299976 GTTGGCCCGGATCAACTCT 59.700 57.895 23.51 0.00 39.85 3.24
929 974 0.338120 CACTCCTCCTCCTTCCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
930 975 0.634465 ACTCCTCCTCCTTCCTCCTC 59.366 60.000 0.00 0.00 0.00 3.71
931 976 0.933700 CTCCTCCTCCTTCCTCCTCT 59.066 60.000 0.00 0.00 0.00 3.69
932 977 1.290732 CTCCTCCTCCTTCCTCCTCTT 59.709 57.143 0.00 0.00 0.00 2.85
933 978 1.007721 TCCTCCTCCTTCCTCCTCTTG 59.992 57.143 0.00 0.00 0.00 3.02
934 979 1.007721 CCTCCTCCTTCCTCCTCTTGA 59.992 57.143 0.00 0.00 0.00 3.02
935 980 2.387757 CTCCTCCTTCCTCCTCTTGAG 58.612 57.143 0.00 0.00 41.07 3.02
1021 1074 0.524816 CACCGCATTGCTCATTGCTC 60.525 55.000 7.12 0.00 43.37 4.26
1022 1075 0.961857 ACCGCATTGCTCATTGCTCA 60.962 50.000 7.12 0.00 43.37 4.26
1023 1076 0.384309 CCGCATTGCTCATTGCTCAT 59.616 50.000 7.12 0.00 43.37 2.90
1024 1077 1.202371 CCGCATTGCTCATTGCTCATT 60.202 47.619 7.12 0.00 43.37 2.57
1025 1078 1.852280 CGCATTGCTCATTGCTCATTG 59.148 47.619 7.12 0.00 43.37 2.82
1026 1079 1.593006 GCATTGCTCATTGCTCATTGC 59.407 47.619 0.16 8.16 43.37 3.56
1027 1080 2.738643 GCATTGCTCATTGCTCATTGCT 60.739 45.455 0.16 0.00 43.37 3.91
1028 1081 2.647529 TTGCTCATTGCTCATTGCTG 57.352 45.000 0.00 0.00 43.37 4.41
1029 1082 0.172578 TGCTCATTGCTCATTGCTGC 59.827 50.000 0.00 0.00 43.37 5.25
1030 1083 0.527817 GCTCATTGCTCATTGCTGCC 60.528 55.000 0.00 0.00 43.37 4.85
1031 1084 1.103803 CTCATTGCTCATTGCTGCCT 58.896 50.000 0.00 0.00 43.37 4.75
1045 1098 3.075005 GCCTGTGCCCGACCTCTA 61.075 66.667 0.00 0.00 0.00 2.43
1047 1100 1.742768 CCTGTGCCCGACCTCTATC 59.257 63.158 0.00 0.00 0.00 2.08
1048 1101 1.043116 CCTGTGCCCGACCTCTATCA 61.043 60.000 0.00 0.00 0.00 2.15
1050 1103 1.327690 TGTGCCCGACCTCTATCACC 61.328 60.000 0.00 0.00 0.00 4.02
1051 1104 1.043673 GTGCCCGACCTCTATCACCT 61.044 60.000 0.00 0.00 0.00 4.00
1053 1106 1.797211 GCCCGACCTCTATCACCTCG 61.797 65.000 0.00 0.00 0.00 4.63
1054 1107 0.465824 CCCGACCTCTATCACCTCGT 60.466 60.000 0.00 0.00 0.00 4.18
1055 1108 1.202734 CCCGACCTCTATCACCTCGTA 60.203 57.143 0.00 0.00 0.00 3.43
1056 1109 2.144730 CCGACCTCTATCACCTCGTAG 58.855 57.143 0.00 0.00 0.00 3.51
1058 1111 2.224233 CGACCTCTATCACCTCGTAGGA 60.224 54.545 7.76 0.00 37.67 2.94
1059 1112 3.743584 CGACCTCTATCACCTCGTAGGAA 60.744 52.174 7.76 0.00 37.67 3.36
1060 1113 3.816523 GACCTCTATCACCTCGTAGGAAG 59.183 52.174 7.76 1.34 37.67 3.46
1062 1115 4.069304 CCTCTATCACCTCGTAGGAAGAG 58.931 52.174 7.76 11.40 37.67 2.85
1063 1116 4.202377 CCTCTATCACCTCGTAGGAAGAGA 60.202 50.000 9.93 12.12 37.67 3.10
1064 1117 4.706035 TCTATCACCTCGTAGGAAGAGAC 58.294 47.826 7.76 0.00 37.67 3.36
1065 1118 3.655615 ATCACCTCGTAGGAAGAGACT 57.344 47.619 7.76 0.00 37.67 3.24
1066 1119 2.988570 TCACCTCGTAGGAAGAGACTC 58.011 52.381 7.76 0.00 37.67 3.36
1067 1120 1.666700 CACCTCGTAGGAAGAGACTCG 59.333 57.143 7.76 0.00 37.67 4.18
1107 1160 1.376037 GCTGCTGACTGGTGGGTAC 60.376 63.158 0.00 0.00 0.00 3.34
1108 1161 1.831652 GCTGCTGACTGGTGGGTACT 61.832 60.000 0.00 0.00 0.00 2.73
1109 1162 1.557099 CTGCTGACTGGTGGGTACTA 58.443 55.000 0.00 0.00 0.00 1.82
1667 2415 3.691342 CACCTCCCGCTCGTCCAA 61.691 66.667 0.00 0.00 0.00 3.53
2199 4323 6.913545 AGTAGTAAACTGGGATAGCTCTACT 58.086 40.000 0.00 0.00 36.93 2.57
2242 4729 8.573035 TGAATAGTTTTATTCGTTTGCTTCCTT 58.427 29.630 3.63 0.00 45.34 3.36
2243 4730 9.406828 GAATAGTTTTATTCGTTTGCTTCCTTT 57.593 29.630 0.00 0.00 36.76 3.11
2244 4731 9.758651 AATAGTTTTATTCGTTTGCTTCCTTTT 57.241 25.926 0.00 0.00 0.00 2.27
2427 5073 3.635331 GTTGAAAACTTCCGGGTAAAGC 58.365 45.455 0.00 0.00 45.32 3.51
2440 5086 3.611530 CGGGTAAAGCTTGTTTCACATGG 60.612 47.826 0.00 0.00 0.00 3.66
2490 5143 4.022603 AGAAGACTATCTCAAGCTCTGCA 58.977 43.478 0.00 0.00 0.00 4.41
2492 5145 2.430332 AGACTATCTCAAGCTCTGCACC 59.570 50.000 0.00 0.00 0.00 5.01
2619 5273 3.465742 TTTTGCCAGTAATGCTGCAAA 57.534 38.095 6.36 13.25 42.99 3.68
2623 5277 2.561858 TGCCAGTAATGCTGCAAATTCA 59.438 40.909 6.36 0.00 43.71 2.57
2624 5278 3.006644 TGCCAGTAATGCTGCAAATTCAA 59.993 39.130 6.36 0.00 43.71 2.69
2625 5279 3.368843 GCCAGTAATGCTGCAAATTCAAC 59.631 43.478 6.36 0.00 43.71 3.18
2626 5280 4.558178 CCAGTAATGCTGCAAATTCAACA 58.442 39.130 6.36 0.00 43.71 3.33
2627 5281 4.624024 CCAGTAATGCTGCAAATTCAACAG 59.376 41.667 6.36 0.00 43.71 3.16
2629 5283 5.921976 CAGTAATGCTGCAAATTCAACAGAA 59.078 36.000 6.36 0.00 38.52 3.02
2631 5285 6.985645 AGTAATGCTGCAAATTCAACAGAAAA 59.014 30.769 6.36 0.00 33.10 2.29
2632 5286 6.870971 AATGCTGCAAATTCAACAGAAAAT 57.129 29.167 6.36 0.00 33.10 1.82
2633 5287 5.660629 TGCTGCAAATTCAACAGAAAATG 57.339 34.783 0.00 0.00 33.10 2.32
2634 5288 4.024725 TGCTGCAAATTCAACAGAAAATGC 60.025 37.500 0.00 10.00 37.40 3.56
2635 5289 4.024725 GCTGCAAATTCAACAGAAAATGCA 60.025 37.500 15.56 15.56 40.98 3.96
2636 5290 5.660629 TGCAAATTCAACAGAAAATGCAG 57.339 34.783 13.62 0.00 39.67 4.41
2637 5291 5.117584 TGCAAATTCAACAGAAAATGCAGT 58.882 33.333 13.62 0.00 39.67 4.40
2638 5292 5.585445 TGCAAATTCAACAGAAAATGCAGTT 59.415 32.000 13.62 0.00 39.67 3.16
2639 5293 6.131389 GCAAATTCAACAGAAAATGCAGTTC 58.869 36.000 0.00 2.02 37.11 3.01
2642 5296 4.305989 TCAACAGAAAATGCAGTTCCAC 57.694 40.909 0.00 0.00 0.00 4.02
2643 5297 3.698539 TCAACAGAAAATGCAGTTCCACA 59.301 39.130 0.00 0.00 0.00 4.17
2644 5298 3.996150 ACAGAAAATGCAGTTCCACAG 57.004 42.857 0.00 0.00 0.00 3.66
2645 5299 3.554934 ACAGAAAATGCAGTTCCACAGA 58.445 40.909 0.00 0.00 0.00 3.41
2646 5300 3.316308 ACAGAAAATGCAGTTCCACAGAC 59.684 43.478 0.00 0.00 0.00 3.51
2647 5301 2.887152 AGAAAATGCAGTTCCACAGACC 59.113 45.455 0.00 0.00 0.00 3.85
2648 5302 2.363306 AAATGCAGTTCCACAGACCA 57.637 45.000 0.00 0.00 0.00 4.02
2650 5304 0.473755 ATGCAGTTCCACAGACCACA 59.526 50.000 0.00 0.00 0.00 4.17
2655 5309 2.752354 CAGTTCCACAGACCACACAAAA 59.248 45.455 0.00 0.00 0.00 2.44
2656 5310 3.192422 CAGTTCCACAGACCACACAAAAA 59.808 43.478 0.00 0.00 0.00 1.94
2708 5432 4.305989 TCAACAGAAAATGCAGTTCCAC 57.694 40.909 0.00 0.00 0.00 4.02
2771 5497 4.706476 CCATACACCACCACAGATGAAATT 59.294 41.667 0.00 0.00 0.00 1.82
2773 5499 6.183360 CCATACACCACCACAGATGAAATTAC 60.183 42.308 0.00 0.00 0.00 1.89
2912 5638 3.678289 TGATCAGGAGAACAACCACATG 58.322 45.455 0.00 0.00 0.00 3.21
3008 5747 3.000727 GTGCATAGCGGTTACAGAAAGT 58.999 45.455 0.00 0.00 0.00 2.66
3009 5748 4.178540 GTGCATAGCGGTTACAGAAAGTA 58.821 43.478 0.00 0.00 0.00 2.24
3067 5813 4.041740 TGTGTGTCAACCTATCTATCGC 57.958 45.455 0.00 0.00 0.00 4.58
3092 5838 3.706600 AAACCGCCTAATCTGTTGGTA 57.293 42.857 0.00 0.00 0.00 3.25
3094 5840 1.134491 ACCGCCTAATCTGTTGGTAGC 60.134 52.381 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.989826 AGCGAAAATCAGCTTAACTAATGATT 58.010 30.769 0.00 0.00 42.61 2.57
1 2 7.559590 AGCGAAAATCAGCTTAACTAATGAT 57.440 32.000 0.00 0.00 41.52 2.45
4 5 7.119846 AGTCAAGCGAAAATCAGCTTAACTAAT 59.880 33.333 4.36 0.00 46.69 1.73
5 6 6.426937 AGTCAAGCGAAAATCAGCTTAACTAA 59.573 34.615 4.36 0.00 46.69 2.24
6 7 5.932303 AGTCAAGCGAAAATCAGCTTAACTA 59.068 36.000 4.36 0.00 46.69 2.24
12 13 4.065088 TGTTAGTCAAGCGAAAATCAGCT 58.935 39.130 0.00 0.00 46.97 4.24
13 14 4.404507 TGTTAGTCAAGCGAAAATCAGC 57.595 40.909 0.00 0.00 0.00 4.26
14 15 7.096477 CCTTTTTGTTAGTCAAGCGAAAATCAG 60.096 37.037 0.00 0.00 37.35 2.90
15 16 6.695278 CCTTTTTGTTAGTCAAGCGAAAATCA 59.305 34.615 0.00 0.00 37.35 2.57
16 17 6.915843 TCCTTTTTGTTAGTCAAGCGAAAATC 59.084 34.615 0.00 0.00 37.35 2.17
17 18 6.801575 TCCTTTTTGTTAGTCAAGCGAAAAT 58.198 32.000 0.00 0.00 37.35 1.82
18 19 6.094325 TCTCCTTTTTGTTAGTCAAGCGAAAA 59.906 34.615 0.00 0.00 37.35 2.29
19 20 5.587043 TCTCCTTTTTGTTAGTCAAGCGAAA 59.413 36.000 0.00 0.00 37.35 3.46
20 21 5.120399 TCTCCTTTTTGTTAGTCAAGCGAA 58.880 37.500 0.00 0.00 37.35 4.70
21 22 4.699637 TCTCCTTTTTGTTAGTCAAGCGA 58.300 39.130 0.00 0.00 37.35 4.93
22 23 4.750098 TCTCTCCTTTTTGTTAGTCAAGCG 59.250 41.667 0.00 0.00 37.35 4.68
23 24 5.992217 TCTCTCTCCTTTTTGTTAGTCAAGC 59.008 40.000 0.00 0.00 37.35 4.01
24 25 7.041712 GGTTCTCTCTCCTTTTTGTTAGTCAAG 60.042 40.741 0.00 0.00 37.35 3.02
25 26 6.766467 GGTTCTCTCTCCTTTTTGTTAGTCAA 59.234 38.462 0.00 0.00 0.00 3.18
26 27 6.099845 AGGTTCTCTCTCCTTTTTGTTAGTCA 59.900 38.462 0.00 0.00 0.00 3.41
27 28 6.425417 CAGGTTCTCTCTCCTTTTTGTTAGTC 59.575 42.308 0.00 0.00 30.91 2.59
28 29 6.099845 TCAGGTTCTCTCTCCTTTTTGTTAGT 59.900 38.462 0.00 0.00 30.91 2.24
29 30 6.425417 GTCAGGTTCTCTCTCCTTTTTGTTAG 59.575 42.308 0.00 0.00 30.91 2.34
30 31 6.099845 AGTCAGGTTCTCTCTCCTTTTTGTTA 59.900 38.462 0.00 0.00 30.91 2.41
31 32 5.104318 AGTCAGGTTCTCTCTCCTTTTTGTT 60.104 40.000 0.00 0.00 30.91 2.83
32 33 4.410555 AGTCAGGTTCTCTCTCCTTTTTGT 59.589 41.667 0.00 0.00 30.91 2.83
33 34 4.967036 AGTCAGGTTCTCTCTCCTTTTTG 58.033 43.478 0.00 0.00 30.91 2.44
34 35 5.372373 CAAGTCAGGTTCTCTCTCCTTTTT 58.628 41.667 0.00 0.00 30.91 1.94
35 36 4.202409 CCAAGTCAGGTTCTCTCTCCTTTT 60.202 45.833 0.00 0.00 30.91 2.27
36 37 3.326297 CCAAGTCAGGTTCTCTCTCCTTT 59.674 47.826 0.00 0.00 30.91 3.11
37 38 2.903135 CCAAGTCAGGTTCTCTCTCCTT 59.097 50.000 0.00 0.00 30.91 3.36
38 39 2.158234 ACCAAGTCAGGTTCTCTCTCCT 60.158 50.000 0.00 0.00 39.34 3.69
39 40 2.028567 CACCAAGTCAGGTTCTCTCTCC 60.029 54.545 0.00 0.00 40.77 3.71
40 41 2.894126 TCACCAAGTCAGGTTCTCTCTC 59.106 50.000 0.00 0.00 40.77 3.20
41 42 2.630580 GTCACCAAGTCAGGTTCTCTCT 59.369 50.000 0.00 0.00 40.77 3.10
42 43 2.365617 TGTCACCAAGTCAGGTTCTCTC 59.634 50.000 0.00 0.00 40.77 3.20
43 44 2.103263 GTGTCACCAAGTCAGGTTCTCT 59.897 50.000 0.00 0.00 40.77 3.10
44 45 2.158957 TGTGTCACCAAGTCAGGTTCTC 60.159 50.000 0.00 0.00 40.77 2.87
45 46 1.837439 TGTGTCACCAAGTCAGGTTCT 59.163 47.619 0.00 0.00 40.77 3.01
46 47 2.325583 TGTGTCACCAAGTCAGGTTC 57.674 50.000 0.00 0.00 40.77 3.62
47 48 2.643551 CTTGTGTCACCAAGTCAGGTT 58.356 47.619 0.00 0.00 40.77 3.50
48 49 2.332063 CTTGTGTCACCAAGTCAGGT 57.668 50.000 0.00 0.00 44.48 4.00
54 55 0.874175 TCGCGACTTGTGTCACCAAG 60.874 55.000 3.71 7.01 45.83 3.61
55 56 0.874175 CTCGCGACTTGTGTCACCAA 60.874 55.000 3.71 0.00 43.06 3.67
56 57 1.299850 CTCGCGACTTGTGTCACCA 60.300 57.895 3.71 0.00 43.06 4.17
57 58 2.658707 GCTCGCGACTTGTGTCACC 61.659 63.158 3.71 0.00 43.06 4.02
58 59 2.846918 GCTCGCGACTTGTGTCAC 59.153 61.111 3.71 0.00 43.06 3.67
59 60 2.729491 CGCTCGCGACTTGTGTCA 60.729 61.111 3.71 0.00 43.06 3.58
60 61 3.470567 CCGCTCGCGACTTGTGTC 61.471 66.667 13.51 0.00 42.83 3.67
61 62 3.898627 CTCCGCTCGCGACTTGTGT 62.899 63.158 13.51 0.00 42.83 3.72
62 63 3.175240 CTCCGCTCGCGACTTGTG 61.175 66.667 13.51 1.90 42.83 3.33
63 64 3.329688 CTCTCCGCTCGCGACTTGT 62.330 63.158 13.51 0.00 42.83 3.16
64 65 2.578178 CTCTCCGCTCGCGACTTG 60.578 66.667 13.51 0.00 42.83 3.16
65 66 2.746671 TCTCTCCGCTCGCGACTT 60.747 61.111 13.51 0.00 42.83 3.01
66 67 3.199190 CTCTCTCCGCTCGCGACT 61.199 66.667 13.51 0.00 42.83 4.18
67 68 2.530465 AAACTCTCTCCGCTCGCGAC 62.530 60.000 13.51 1.04 42.83 5.19
68 69 2.254703 GAAACTCTCTCCGCTCGCGA 62.255 60.000 9.26 9.26 42.83 5.87
69 70 1.870016 GAAACTCTCTCCGCTCGCG 60.870 63.158 0.00 0.00 39.44 5.87
70 71 0.733729 TAGAAACTCTCTCCGCTCGC 59.266 55.000 0.00 0.00 35.41 5.03
71 72 1.332375 CCTAGAAACTCTCTCCGCTCG 59.668 57.143 0.00 0.00 35.41 5.03
72 73 1.679153 CCCTAGAAACTCTCTCCGCTC 59.321 57.143 0.00 0.00 35.41 5.03
73 74 1.770294 CCCTAGAAACTCTCTCCGCT 58.230 55.000 0.00 0.00 35.41 5.52
74 75 0.103390 GCCCTAGAAACTCTCTCCGC 59.897 60.000 0.00 0.00 35.41 5.54
75 76 1.475403 TGCCCTAGAAACTCTCTCCG 58.525 55.000 0.00 0.00 35.41 4.63
76 77 2.484594 GCATGCCCTAGAAACTCTCTCC 60.485 54.545 6.36 0.00 35.41 3.71
77 78 2.169352 TGCATGCCCTAGAAACTCTCTC 59.831 50.000 16.68 0.00 35.41 3.20
78 79 2.191400 TGCATGCCCTAGAAACTCTCT 58.809 47.619 16.68 0.00 38.28 3.10
79 80 2.698855 TGCATGCCCTAGAAACTCTC 57.301 50.000 16.68 0.00 0.00 3.20
80 81 2.928334 CATGCATGCCCTAGAAACTCT 58.072 47.619 14.93 0.00 0.00 3.24
93 94 0.387494 TGCGTCTGTTTGCATGCATG 60.387 50.000 23.37 22.70 35.90 4.06
94 95 0.314618 TTGCGTCTGTTTGCATGCAT 59.685 45.000 23.37 0.00 41.42 3.96
95 96 0.318022 CTTGCGTCTGTTTGCATGCA 60.318 50.000 18.46 18.46 41.42 3.96
96 97 2.427360 CTTGCGTCTGTTTGCATGC 58.573 52.632 11.82 11.82 41.42 4.06
97 98 1.005294 GGCTTGCGTCTGTTTGCATG 61.005 55.000 0.00 0.00 41.42 4.06
98 99 1.286880 GGCTTGCGTCTGTTTGCAT 59.713 52.632 0.00 0.00 41.42 3.96
99 100 1.661498 TTGGCTTGCGTCTGTTTGCA 61.661 50.000 0.00 0.00 39.81 4.08
100 101 0.527385 TTTGGCTTGCGTCTGTTTGC 60.527 50.000 0.00 0.00 0.00 3.68
101 102 1.480205 CTTTGGCTTGCGTCTGTTTG 58.520 50.000 0.00 0.00 0.00 2.93
102 103 0.385390 CCTTTGGCTTGCGTCTGTTT 59.615 50.000 0.00 0.00 0.00 2.83
103 104 2.032981 CCTTTGGCTTGCGTCTGTT 58.967 52.632 0.00 0.00 0.00 3.16
104 105 2.555547 GCCTTTGGCTTGCGTCTGT 61.556 57.895 0.73 0.00 46.69 3.41
105 106 2.256461 GCCTTTGGCTTGCGTCTG 59.744 61.111 0.73 0.00 46.69 3.51
114 115 1.592400 GAACCCTAACCGCCTTTGGC 61.592 60.000 0.00 0.00 46.75 4.52
115 116 0.037734 AGAACCCTAACCGCCTTTGG 59.962 55.000 0.00 0.00 0.00 3.28
116 117 1.905637 AAGAACCCTAACCGCCTTTG 58.094 50.000 0.00 0.00 0.00 2.77
117 118 2.107726 AGAAAGAACCCTAACCGCCTTT 59.892 45.455 0.00 0.00 0.00 3.11
118 119 1.703513 AGAAAGAACCCTAACCGCCTT 59.296 47.619 0.00 0.00 0.00 4.35
119 120 1.359168 AGAAAGAACCCTAACCGCCT 58.641 50.000 0.00 0.00 0.00 5.52
120 121 3.203716 CATAGAAAGAACCCTAACCGCC 58.796 50.000 0.00 0.00 0.00 6.13
121 122 3.870274 ACATAGAAAGAACCCTAACCGC 58.130 45.455 0.00 0.00 0.00 5.68
122 123 4.094442 GCAACATAGAAAGAACCCTAACCG 59.906 45.833 0.00 0.00 0.00 4.44
123 124 4.398358 GGCAACATAGAAAGAACCCTAACC 59.602 45.833 0.00 0.00 0.00 2.85
124 125 5.007682 TGGCAACATAGAAAGAACCCTAAC 58.992 41.667 0.00 0.00 46.17 2.34
125 126 5.249780 TGGCAACATAGAAAGAACCCTAA 57.750 39.130 0.00 0.00 46.17 2.69
126 127 4.919774 TGGCAACATAGAAAGAACCCTA 57.080 40.909 0.00 0.00 46.17 3.53
127 128 3.806949 TGGCAACATAGAAAGAACCCT 57.193 42.857 0.00 0.00 46.17 4.34
141 142 1.910580 TTCGGAGGAGGGATGGCAAC 61.911 60.000 0.00 0.00 0.00 4.17
142 143 0.988145 ATTCGGAGGAGGGATGGCAA 60.988 55.000 0.00 0.00 0.00 4.52
143 144 1.384502 ATTCGGAGGAGGGATGGCA 60.385 57.895 0.00 0.00 0.00 4.92
144 145 1.072159 CATTCGGAGGAGGGATGGC 59.928 63.158 0.00 0.00 0.00 4.40
145 146 1.620819 CTACATTCGGAGGAGGGATGG 59.379 57.143 0.00 0.00 0.00 3.51
146 147 1.620819 CCTACATTCGGAGGAGGGATG 59.379 57.143 0.00 0.00 34.46 3.51
147 148 2.016905 CCTACATTCGGAGGAGGGAT 57.983 55.000 0.00 0.00 34.46 3.85
148 149 0.759436 GCCTACATTCGGAGGAGGGA 60.759 60.000 0.00 0.00 34.46 4.20
149 150 1.749033 GCCTACATTCGGAGGAGGG 59.251 63.158 0.00 0.00 34.46 4.30
150 151 1.749033 GGCCTACATTCGGAGGAGG 59.251 63.158 0.00 0.00 34.46 4.30
151 152 1.749033 GGGCCTACATTCGGAGGAG 59.251 63.158 0.84 0.00 34.46 3.69
152 153 2.131709 CGGGCCTACATTCGGAGGA 61.132 63.158 0.84 0.00 34.46 3.71
153 154 1.682451 TTCGGGCCTACATTCGGAGG 61.682 60.000 0.84 0.00 35.78 4.30
154 155 0.249489 CTTCGGGCCTACATTCGGAG 60.249 60.000 0.84 0.00 0.00 4.63
155 156 1.820581 CTTCGGGCCTACATTCGGA 59.179 57.895 0.84 0.00 0.00 4.55
156 157 1.887707 GCTTCGGGCCTACATTCGG 60.888 63.158 0.84 0.00 34.27 4.30
157 158 0.462047 AAGCTTCGGGCCTACATTCG 60.462 55.000 0.84 0.00 43.05 3.34
158 159 1.751437 AAAGCTTCGGGCCTACATTC 58.249 50.000 0.84 0.00 43.05 2.67
159 160 2.215942 AAAAGCTTCGGGCCTACATT 57.784 45.000 0.84 0.00 43.05 2.71
160 161 2.215942 AAAAAGCTTCGGGCCTACAT 57.784 45.000 0.84 0.00 43.05 2.29
161 162 3.737702 AAAAAGCTTCGGGCCTACA 57.262 47.368 0.84 0.00 43.05 2.74
179 180 2.907917 CACCACCGGGCCGAAAAA 60.908 61.111 30.79 0.00 37.90 1.94
180 181 4.192453 ACACCACCGGGCCGAAAA 62.192 61.111 30.79 0.00 37.90 2.29
181 182 4.939368 CACACCACCGGGCCGAAA 62.939 66.667 30.79 0.00 37.90 3.46
187 188 3.998672 AGCGTACACACCACCGGG 61.999 66.667 6.32 0.00 41.29 5.73
188 189 2.736995 CAGCGTACACACCACCGG 60.737 66.667 0.00 0.00 0.00 5.28
189 190 2.028484 ACAGCGTACACACCACCG 59.972 61.111 0.00 0.00 0.00 4.94
190 191 1.959226 CCACAGCGTACACACCACC 60.959 63.158 0.00 0.00 0.00 4.61
191 192 1.959226 CCCACAGCGTACACACCAC 60.959 63.158 0.00 0.00 0.00 4.16
192 193 2.134933 TCCCACAGCGTACACACCA 61.135 57.895 0.00 0.00 0.00 4.17
193 194 1.666872 GTCCCACAGCGTACACACC 60.667 63.158 0.00 0.00 0.00 4.16
194 195 0.944311 CAGTCCCACAGCGTACACAC 60.944 60.000 0.00 0.00 0.00 3.82
195 196 1.365999 CAGTCCCACAGCGTACACA 59.634 57.895 0.00 0.00 0.00 3.72
196 197 1.374252 CCAGTCCCACAGCGTACAC 60.374 63.158 0.00 0.00 0.00 2.90
197 198 0.902984 ATCCAGTCCCACAGCGTACA 60.903 55.000 0.00 0.00 0.00 2.90
198 199 0.249398 AATCCAGTCCCACAGCGTAC 59.751 55.000 0.00 0.00 0.00 3.67
199 200 0.249120 CAATCCAGTCCCACAGCGTA 59.751 55.000 0.00 0.00 0.00 4.42
200 201 1.003355 CAATCCAGTCCCACAGCGT 60.003 57.895 0.00 0.00 0.00 5.07
201 202 0.249120 TACAATCCAGTCCCACAGCG 59.751 55.000 0.00 0.00 0.00 5.18
202 203 2.717639 ATACAATCCAGTCCCACAGC 57.282 50.000 0.00 0.00 0.00 4.40
203 204 3.947834 GGAAATACAATCCAGTCCCACAG 59.052 47.826 0.00 0.00 36.92 3.66
204 205 3.591527 AGGAAATACAATCCAGTCCCACA 59.408 43.478 0.00 0.00 39.55 4.17
205 206 4.236527 AGGAAATACAATCCAGTCCCAC 57.763 45.455 0.00 0.00 39.55 4.61
206 207 4.946160 AAGGAAATACAATCCAGTCCCA 57.054 40.909 0.00 0.00 39.55 4.37
207 208 6.605471 AAAAAGGAAATACAATCCAGTCCC 57.395 37.500 0.00 0.00 39.55 4.46
260 261 9.982291 CGATCCGAAACTCTTTATTAATCAAAA 57.018 29.630 0.00 0.00 0.00 2.44
261 262 9.158233 ACGATCCGAAACTCTTTATTAATCAAA 57.842 29.630 0.00 0.00 0.00 2.69
262 263 8.712285 ACGATCCGAAACTCTTTATTAATCAA 57.288 30.769 0.00 0.00 0.00 2.57
263 264 8.712285 AACGATCCGAAACTCTTTATTAATCA 57.288 30.769 0.00 0.00 0.00 2.57
264 265 7.997104 CGAACGATCCGAAACTCTTTATTAATC 59.003 37.037 0.00 0.00 0.00 1.75
265 266 7.516312 GCGAACGATCCGAAACTCTTTATTAAT 60.516 37.037 0.00 0.00 0.00 1.40
266 267 6.237648 GCGAACGATCCGAAACTCTTTATTAA 60.238 38.462 0.00 0.00 0.00 1.40
267 268 5.230726 GCGAACGATCCGAAACTCTTTATTA 59.769 40.000 0.00 0.00 0.00 0.98
268 269 4.032558 GCGAACGATCCGAAACTCTTTATT 59.967 41.667 0.00 0.00 0.00 1.40
269 270 3.550678 GCGAACGATCCGAAACTCTTTAT 59.449 43.478 0.00 0.00 0.00 1.40
270 271 2.919229 GCGAACGATCCGAAACTCTTTA 59.081 45.455 0.00 0.00 0.00 1.85
271 272 1.725164 GCGAACGATCCGAAACTCTTT 59.275 47.619 0.00 0.00 0.00 2.52
272 273 1.347320 GCGAACGATCCGAAACTCTT 58.653 50.000 0.00 0.00 0.00 2.85
273 274 0.458025 GGCGAACGATCCGAAACTCT 60.458 55.000 0.00 0.00 0.00 3.24
274 275 1.419107 GGGCGAACGATCCGAAACTC 61.419 60.000 0.00 0.00 0.00 3.01
275 276 1.447314 GGGCGAACGATCCGAAACT 60.447 57.895 0.00 0.00 0.00 2.66
276 277 1.293267 TTGGGCGAACGATCCGAAAC 61.293 55.000 0.00 0.00 0.00 2.78
277 278 0.603172 TTTGGGCGAACGATCCGAAA 60.603 50.000 0.00 0.00 0.00 3.46
278 279 0.603172 TTTTGGGCGAACGATCCGAA 60.603 50.000 0.00 2.52 0.00 4.30
279 280 0.603172 TTTTTGGGCGAACGATCCGA 60.603 50.000 0.00 0.00 0.00 4.55
280 281 1.870383 TTTTTGGGCGAACGATCCG 59.130 52.632 0.00 0.00 0.00 4.18
336 337 6.294508 CCACTCGATCCCATGTTTTACTTTTT 60.295 38.462 0.00 0.00 0.00 1.94
337 338 5.183140 CCACTCGATCCCATGTTTTACTTTT 59.817 40.000 0.00 0.00 0.00 2.27
338 339 4.700213 CCACTCGATCCCATGTTTTACTTT 59.300 41.667 0.00 0.00 0.00 2.66
339 340 4.261801 CCACTCGATCCCATGTTTTACTT 58.738 43.478 0.00 0.00 0.00 2.24
340 341 3.370527 CCCACTCGATCCCATGTTTTACT 60.371 47.826 0.00 0.00 0.00 2.24
341 342 2.943033 CCCACTCGATCCCATGTTTTAC 59.057 50.000 0.00 0.00 0.00 2.01
342 343 2.574369 ACCCACTCGATCCCATGTTTTA 59.426 45.455 0.00 0.00 0.00 1.52
343 344 1.354368 ACCCACTCGATCCCATGTTTT 59.646 47.619 0.00 0.00 0.00 2.43
344 345 0.991920 ACCCACTCGATCCCATGTTT 59.008 50.000 0.00 0.00 0.00 2.83
345 346 1.874129 TACCCACTCGATCCCATGTT 58.126 50.000 0.00 0.00 0.00 2.71
346 347 1.874129 TTACCCACTCGATCCCATGT 58.126 50.000 0.00 0.00 0.00 3.21
347 348 3.275617 TTTTACCCACTCGATCCCATG 57.724 47.619 0.00 0.00 0.00 3.66
348 349 5.132144 AGTTATTTTACCCACTCGATCCCAT 59.868 40.000 0.00 0.00 0.00 4.00
349 350 4.472108 AGTTATTTTACCCACTCGATCCCA 59.528 41.667 0.00 0.00 0.00 4.37
350 351 5.032327 AGTTATTTTACCCACTCGATCCC 57.968 43.478 0.00 0.00 0.00 3.85
351 352 5.878669 ACAAGTTATTTTACCCACTCGATCC 59.121 40.000 0.00 0.00 0.00 3.36
352 353 6.592607 TCACAAGTTATTTTACCCACTCGATC 59.407 38.462 0.00 0.00 0.00 3.69
353 354 6.469410 TCACAAGTTATTTTACCCACTCGAT 58.531 36.000 0.00 0.00 0.00 3.59
354 355 5.856156 TCACAAGTTATTTTACCCACTCGA 58.144 37.500 0.00 0.00 0.00 4.04
355 356 6.542852 CATCACAAGTTATTTTACCCACTCG 58.457 40.000 0.00 0.00 0.00 4.18
356 357 6.072175 TGCATCACAAGTTATTTTACCCACTC 60.072 38.462 0.00 0.00 0.00 3.51
357 358 5.772672 TGCATCACAAGTTATTTTACCCACT 59.227 36.000 0.00 0.00 0.00 4.00
358 359 6.019779 TGCATCACAAGTTATTTTACCCAC 57.980 37.500 0.00 0.00 0.00 4.61
359 360 6.656632 TTGCATCACAAGTTATTTTACCCA 57.343 33.333 0.00 0.00 33.24 4.51
372 373 1.001487 CCTGCGTTTCTTGCATCACAA 60.001 47.619 0.00 0.00 42.32 3.33
373 374 0.592637 CCTGCGTTTCTTGCATCACA 59.407 50.000 0.00 0.00 42.32 3.58
374 375 0.109597 CCCTGCGTTTCTTGCATCAC 60.110 55.000 0.00 0.00 42.32 3.06
375 376 1.865788 GCCCTGCGTTTCTTGCATCA 61.866 55.000 0.00 0.00 42.32 3.07
376 377 1.153958 GCCCTGCGTTTCTTGCATC 60.154 57.895 0.00 0.00 42.32 3.91
377 378 1.252904 ATGCCCTGCGTTTCTTGCAT 61.253 50.000 0.00 0.00 42.32 3.96
378 379 0.607762 TATGCCCTGCGTTTCTTGCA 60.608 50.000 0.00 0.00 40.70 4.08
379 380 0.740737 ATATGCCCTGCGTTTCTTGC 59.259 50.000 0.00 0.00 0.00 4.01
380 381 1.534595 GCATATGCCCTGCGTTTCTTG 60.535 52.381 17.26 0.00 34.31 3.02
381 382 0.740737 GCATATGCCCTGCGTTTCTT 59.259 50.000 17.26 0.00 34.31 2.52
382 383 0.394216 TGCATATGCCCTGCGTTTCT 60.394 50.000 24.54 0.00 42.62 2.52
391 392 1.092921 TTCCGACGTTGCATATGCCC 61.093 55.000 24.54 13.96 41.18 5.36
627 635 4.670221 GCATTGTGTTTGCCAAACGAAAAA 60.670 37.500 15.06 7.36 44.28 1.94
628 636 3.181516 GCATTGTGTTTGCCAAACGAAAA 60.182 39.130 15.06 9.58 44.28 2.29
629 637 2.349886 GCATTGTGTTTGCCAAACGAAA 59.650 40.909 15.06 11.83 44.28 3.46
630 638 1.929836 GCATTGTGTTTGCCAAACGAA 59.070 42.857 15.06 10.67 44.28 3.85
633 641 0.042274 GCGCATTGTGTTTGCCAAAC 60.042 50.000 13.35 13.35 41.73 2.93
663 671 1.885887 GTTCCTTGCCTGTTATGTGCA 59.114 47.619 0.00 0.00 0.00 4.57
704 720 1.274596 TTTTTATCCGACGAGCGAGC 58.725 50.000 0.00 0.00 44.57 5.03
706 722 2.198406 CCATTTTTATCCGACGAGCGA 58.802 47.619 0.00 0.00 44.57 4.93
715 751 9.696917 AGAAATTAATCATCGCCATTTTTATCC 57.303 29.630 0.00 0.00 0.00 2.59
780 816 8.768397 TCCACTCCTATGCCGAATTATTAATAT 58.232 33.333 0.00 0.00 0.00 1.28
781 817 8.141298 TCCACTCCTATGCCGAATTATTAATA 57.859 34.615 0.00 0.00 0.00 0.98
782 818 7.016153 TCCACTCCTATGCCGAATTATTAAT 57.984 36.000 0.00 0.00 0.00 1.40
783 819 6.428083 TCCACTCCTATGCCGAATTATTAA 57.572 37.500 0.00 0.00 0.00 1.40
784 820 6.620877 ATCCACTCCTATGCCGAATTATTA 57.379 37.500 0.00 0.00 0.00 0.98
785 821 4.974645 TCCACTCCTATGCCGAATTATT 57.025 40.909 0.00 0.00 0.00 1.40
786 822 5.248640 CAATCCACTCCTATGCCGAATTAT 58.751 41.667 0.00 0.00 0.00 1.28
787 823 4.641396 CAATCCACTCCTATGCCGAATTA 58.359 43.478 0.00 0.00 0.00 1.40
822 862 1.063341 CAGAGATGGACAGGAGGAGGA 60.063 57.143 0.00 0.00 0.00 3.71
823 863 1.063341 TCAGAGATGGACAGGAGGAGG 60.063 57.143 0.00 0.00 0.00 4.30
824 864 2.450867 TCAGAGATGGACAGGAGGAG 57.549 55.000 0.00 0.00 0.00 3.69
838 878 4.577875 ACTGCAAGAGGAAGAAATCAGAG 58.422 43.478 0.00 0.00 37.43 3.35
905 945 1.633774 GAAGGAGGAGGAGTGTGTGA 58.366 55.000 0.00 0.00 0.00 3.58
929 974 1.257743 CGGGAGGTCAAGACTCAAGA 58.742 55.000 0.00 0.00 36.70 3.02
930 975 0.390472 GCGGGAGGTCAAGACTCAAG 60.390 60.000 0.00 0.00 36.70 3.02
931 976 1.671742 GCGGGAGGTCAAGACTCAA 59.328 57.895 0.00 0.00 36.70 3.02
932 977 2.283529 GGCGGGAGGTCAAGACTCA 61.284 63.158 0.00 0.00 36.70 3.41
933 978 1.827399 TTGGCGGGAGGTCAAGACTC 61.827 60.000 0.00 0.00 34.73 3.36
934 979 1.841556 TTGGCGGGAGGTCAAGACT 60.842 57.895 0.00 0.00 34.73 3.24
935 980 1.671379 GTTGGCGGGAGGTCAAGAC 60.671 63.158 0.00 0.00 41.80 3.01
1021 1074 4.124351 CGGGCACAGGCAGCAATG 62.124 66.667 0.00 0.00 43.71 2.82
1022 1075 4.349503 TCGGGCACAGGCAGCAAT 62.350 61.111 0.00 0.00 43.71 3.56
1026 1079 4.767255 GAGGTCGGGCACAGGCAG 62.767 72.222 0.00 0.00 43.71 4.85
1027 1080 3.897681 TAGAGGTCGGGCACAGGCA 62.898 63.158 0.00 0.00 43.71 4.75
1028 1081 2.370647 GATAGAGGTCGGGCACAGGC 62.371 65.000 0.00 0.00 40.13 4.85
1029 1082 1.043116 TGATAGAGGTCGGGCACAGG 61.043 60.000 0.00 0.00 0.00 4.00
1030 1083 0.103208 GTGATAGAGGTCGGGCACAG 59.897 60.000 0.00 0.00 0.00 3.66
1031 1084 1.327690 GGTGATAGAGGTCGGGCACA 61.328 60.000 0.00 0.00 0.00 4.57
1045 1098 3.547746 GAGTCTCTTCCTACGAGGTGAT 58.452 50.000 0.00 0.00 36.53 3.06
1047 1100 1.666700 CGAGTCTCTTCCTACGAGGTG 59.333 57.143 0.00 0.00 36.53 4.00
1048 1101 2.013058 GCGAGTCTCTTCCTACGAGGT 61.013 57.143 0.00 0.00 36.53 3.85
1050 1103 0.302288 CGCGAGTCTCTTCCTACGAG 59.698 60.000 0.00 0.00 0.00 4.18
1051 1104 0.390866 ACGCGAGTCTCTTCCTACGA 60.391 55.000 15.93 0.00 44.19 3.43
1064 1117 1.226802 CTCCTCACCATGACGCGAG 60.227 63.158 15.93 0.00 0.00 5.03
1065 1118 1.657751 CTCTCCTCACCATGACGCGA 61.658 60.000 15.93 0.00 0.00 5.87
1066 1119 1.226802 CTCTCCTCACCATGACGCG 60.227 63.158 3.53 3.53 0.00 6.01
1067 1120 1.142748 CCTCTCCTCACCATGACGC 59.857 63.158 0.00 0.00 0.00 5.19
1794 3683 4.457496 ATGAGGACGCACGCCCTG 62.457 66.667 1.56 0.00 31.84 4.45
2244 4731 3.131223 TCATTTCCACGCCAACAGAAAAA 59.869 39.130 0.00 0.00 32.41 1.94
2361 4998 3.080660 ACCCACCCATATCATTCTCCT 57.919 47.619 0.00 0.00 0.00 3.69
2416 5062 2.223745 GTGAAACAAGCTTTACCCGGA 58.776 47.619 0.73 0.00 36.32 5.14
2440 5086 8.723942 ACTAGATAATGTCTTCAACAATGGTC 57.276 34.615 0.00 0.00 42.37 4.02
2474 5127 1.537776 CCGGTGCAGAGCTTGAGATAG 60.538 57.143 0.00 0.00 0.00 2.08
2490 5143 1.205655 CTGACAGATGTGATCACCGGT 59.794 52.381 22.85 14.47 0.00 5.28
2492 5145 1.205655 ACCTGACAGATGTGATCACCG 59.794 52.381 22.85 11.11 0.00 4.94
2615 5269 5.662211 ACTGCATTTTCTGTTGAATTTGC 57.338 34.783 0.00 0.00 39.15 3.68
2619 5273 5.163426 TGTGGAACTGCATTTTCTGTTGAAT 60.163 36.000 7.84 0.00 38.04 2.57
2623 5277 3.953612 TCTGTGGAACTGCATTTTCTGTT 59.046 39.130 7.84 0.00 38.04 3.16
2624 5278 3.316308 GTCTGTGGAACTGCATTTTCTGT 59.684 43.478 7.84 0.00 38.04 3.41
2625 5279 3.304928 GGTCTGTGGAACTGCATTTTCTG 60.305 47.826 7.84 0.42 38.04 3.02
2626 5280 2.887152 GGTCTGTGGAACTGCATTTTCT 59.113 45.455 7.84 0.00 38.04 2.52
2627 5281 2.622942 TGGTCTGTGGAACTGCATTTTC 59.377 45.455 0.00 0.00 38.04 2.29
2629 5283 1.956477 GTGGTCTGTGGAACTGCATTT 59.044 47.619 0.00 0.00 38.04 2.32
2631 5285 0.473755 TGTGGTCTGTGGAACTGCAT 59.526 50.000 0.00 0.00 38.04 3.96
2632 5286 0.463654 GTGTGGTCTGTGGAACTGCA 60.464 55.000 0.00 0.00 38.04 4.41
2633 5287 0.463654 TGTGTGGTCTGTGGAACTGC 60.464 55.000 0.00 0.00 38.04 4.40
2634 5288 2.036958 TTGTGTGGTCTGTGGAACTG 57.963 50.000 0.00 0.00 38.04 3.16
2635 5289 2.799126 TTTGTGTGGTCTGTGGAACT 57.201 45.000 0.00 0.00 38.04 3.01
2636 5290 3.859411 TTTTTGTGTGGTCTGTGGAAC 57.141 42.857 0.00 0.00 37.35 3.62
2669 5323 6.426937 TCTGTTGAAGTTACAGAATTACTGGC 59.573 38.462 6.09 0.00 46.54 4.85
2771 5497 3.630054 CCTCCACTGTCCCCTAATCAGTA 60.630 52.174 0.00 0.00 39.89 2.74
2773 5499 1.765314 CCTCCACTGTCCCCTAATCAG 59.235 57.143 0.00 0.00 35.60 2.90
2912 5638 2.291741 CCCTGTCTTGAAAGAGCAACAC 59.708 50.000 0.00 0.00 35.32 3.32
2979 5718 0.250234 ACCGCTATGCACAGTCATGT 59.750 50.000 0.00 0.00 41.57 3.21
3008 5747 9.996554 CAACCAGGTGATTCTACAATATATGTA 57.003 33.333 0.00 0.00 43.63 2.29
3009 5748 8.713971 TCAACCAGGTGATTCTACAATATATGT 58.286 33.333 0.00 0.00 46.36 2.29
3067 5813 4.475944 CAACAGATTAGGCGGTTTTGAAG 58.524 43.478 0.00 0.00 0.00 3.02
3092 5838 5.356426 GTGTTTACCACAGGAAATTTTGCT 58.644 37.500 0.00 0.00 43.92 3.91
3161 5909 9.974980 GTGGTTGTAAATTAGGAAAATGAAAGA 57.025 29.630 0.00 0.00 0.00 2.52
3176 5924 3.308188 GGAGTAGGCCAGTGGTTGTAAAT 60.308 47.826 11.74 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.