AutoCloner

Multiple sequence alignment - TraesCS5D01G087700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G087700	chr5D	100.000	5334	0	0	1	5334	93070510	93065177	0.000000e+00	9851.0
1	TraesCS5D01G087700	chr5A	97.577	3384	65	8	1957	5334	86666096	86662724	0.000000e+00	5779.0
2	TraesCS5D01G087700	chr5A	94.649	1439	45	7	1	1435	86667501	86666091	0.000000e+00	2202.0
3	TraesCS5D01G087700	chr5A	93.478	46	2	1	1957	2002	681262448	681262492	3.450000e-07	67.6
4	TraesCS5D01G087700	chr5B	97.301	2594	53	4	1957	4546	98667510	98664930	0.000000e+00	4386.0
5	TraesCS5D01G087700	chr5B	93.978	1395	56	16	54	1433	98668888	98667507	0.000000e+00	2085.0
6	TraesCS5D01G087700	chr5B	97.231	614	16	1	4722	5334	98664488	98663875	0.000000e+00	1038.0
7	TraesCS5D01G087700	chr5B	91.250	80	7	0	4603	4682	98664831	98664752	5.650000e-20	110.0
8	TraesCS5D01G087700	chr5B	95.918	49	2	0	10	58	98674207	98674159	4.430000e-11	80.5
9	TraesCS5D01G087700	chr2D	98.644	295	4	0	1433	1727	70375456	70375750	1.700000e-144	523.0
10	TraesCS5D01G087700	chr2D	93.515	293	18	1	1437	1728	516912965	516913257	8.200000e-118	435.0
11	TraesCS5D01G087700	chr2D	92.405	237	16	2	1719	1953	412637643	412637407	2.380000e-88	337.0
12	TraesCS5D01G087700	chr2D	97.561	41	0	1	1957	1997	33312751	33312790	9.590000e-08	69.4
13	TraesCS5D01G087700	chr3D	96.667	300	9	1	1430	1728	486556868	486557167	1.030000e-136	497.0
14	TraesCS5D01G087700	chr3D	94.538	238	11	2	1719	1954	486557200	486557437	3.040000e-97	366.0
15	TraesCS5D01G087700	chr7A	94.631	298	14	2	1430	1727	307010083	307009788	1.350000e-125	460.0
16	TraesCS5D01G087700	chr7A	89.583	48	2	3	1957	2002	735949110	735949064	2.070000e-04	58.4
17	TraesCS5D01G087700	chr2A	93.814	291	17	1	1437	1727	151263254	151262965	2.280000e-118	436.0
18	TraesCS5D01G087700	chr2A	92.953	298	18	3	1430	1727	579828974	579829268	1.060000e-116	431.0
19	TraesCS5D01G087700	chr2A	91.770	243	17	3	1719	1959	563222841	563223082	8.560000e-88	335.0
20	TraesCS5D01G087700	chr2A	90.612	245	20	3	1719	1961	579829303	579829546	6.660000e-84	322.0
21	TraesCS5D01G087700	chr7B	94.035	285	17	0	1443	1727	34160289	34160573	2.950000e-117	433.0
22	TraesCS5D01G087700	chr4D	93.471	291	19	0	1437	1727	125783651	125783941	2.950000e-117	433.0
23	TraesCS5D01G087700	chr4D	94.231	52	2	1	1957	2008	113153550	113153600	1.590000e-10	78.7
24	TraesCS5D01G087700	chr4D	97.727	44	1	0	1957	2000	500419842	500419885	5.730000e-10	76.8
25	TraesCS5D01G087700	chr1D	93.127	291	20	0	1437	1727	379728626	379728916	1.370000e-115	427.0
26	TraesCS5D01G087700	chr1D	92.405	237	16	2	1719	1953	10600736	10600972	2.380000e-88	337.0
27	TraesCS5D01G087700	chr4A	92.469	239	16	2	1719	1955	45350747	45350509	1.840000e-89	340.0
28	TraesCS5D01G087700	chr6D	92.017	238	17	1	1719	1954	153202491	153202254	3.080000e-87	333.0
29	TraesCS5D01G087700	chr6D	91.632	239	18	2	1719	1955	48675005	48674767	3.980000e-86	329.0
30	TraesCS5D01G087700	chr4B	91.983	237	16	3	1719	1953	657859692	657859927	3.980000e-86	329.0
31	TraesCS5D01G087700	chr3A	95.745	47	1	1	1957	2003	290447773	290447728	2.060000e-09	75.0
32	TraesCS5D01G087700	chr2B	95.122	41	2	0	1957	1997	296018039	296018079	1.240000e-06	65.8
33	TraesCS5D01G087700	chr3B	91.489	47	1	3	1957	2002	42146565	42146609	1.600000e-05	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G087700	chr5D	93065177	93070510	5333	True	9851.00	9851	100.0000	1	5334	1	chr5D.!!$R1	5333
1	TraesCS5D01G087700	chr5A	86662724	86667501	4777	True	3990.50	5779	96.1130	1	5334	2	chr5A.!!$R1	5333
2	TraesCS5D01G087700	chr5B	98663875	98668888	5013	True	1904.75	4386	94.9400	54	5334	4	chr5B.!!$R2	5280
3	TraesCS5D01G087700	chr3D	486556868	486557437	569	False	431.50	497	95.6025	1430	1954	2	chr3D.!!$F1	524
4	TraesCS5D01G087700	chr2A	579828974	579829546	572	False	376.50	431	91.7825	1430	1961	2	chr2A.!!$F2	531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
40	41	0.324285	AGAGGCACAGCTTTCTCCAG	59.676	55.000	0.00	0.00	0.00	3.86	F
564	576	1.067142	TCCGTTGGAGGTTCAGATTCG	60.067	52.381	0.00	0.00	0.00	3.34	F
995	1013	1.259609	ACATCATTTGCAGGTGGTGG	58.740	50.000	15.42	3.28	30.76	4.61	F
1429	1447	0.930726	ACTTGTTCCCCCACCTTTCA	59.069	50.000	0.00	0.00	0.00	2.69	F
1430	1448	1.289530	ACTTGTTCCCCCACCTTTCAA	59.710	47.619	0.00	0.00	0.00	2.69	F
2384	2447	1.322442	AGGCTTCAAGTGGCTTGTTC	58.678	50.000	8.48	0.79	41.66	3.18	F
4012	4080	0.673644	CCATGGTCACCGTCAGGAAC	60.674	60.000	2.57	0.00	41.02	3.62	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1026	1044	1.956477	AGTGTAGGCAAGCAAACAAGG	59.044	47.619	0.00	0.00	3.61	R
1411	1429	2.080654	TTGAAAGGTGGGGGAACAAG	57.919	50.000	0.00	0.00	3.16	R
2976	3041	1.001706	GTTCAACCAGGTCTTTTCCGC	60.002	52.381	0.00	0.00	5.54	R
3454	3519	4.618460	GCCGTGATAGTCTGTTCTTCTGAA	60.618	45.833	0.00	0.00	3.02	R
3660	3728	4.588951	TCTGGCAGGAATATACAGTACAGG	59.411	45.833	15.73	0.00	4.00	R
4099	4167	2.300967	ATCGGAGGCTTTGCTCCCA	61.301	57.895	0.00	36.44	4.37	R
4813	5186	4.469657	ACATTTTGCACCCAGTCTTTCTA	58.530	39.130	0.00	0.00	2.10	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	0.324285	AGAGGCACAGCTTTCTCCAG	59.676	55.000	0.00	0.00	0.00	3.86
77	79	3.780626	AGGGAGATATAAAGAGGACCGG	58.219	50.000	0.00	0.00	0.00	5.28
78	80	2.234168	GGGAGATATAAAGAGGACCGGC	59.766	54.545	0.00	0.00	0.00	6.13
79	81	2.897969	GGAGATATAAAGAGGACCGGCA	59.102	50.000	0.00	0.00	0.00	5.69
80	82	3.056465	GGAGATATAAAGAGGACCGGCAG	60.056	52.174	0.00	0.00	0.00	4.85
81	83	2.300437	AGATATAAAGAGGACCGGCAGC	59.700	50.000	0.00	0.00	0.00	5.25
82	84	1.789523	TATAAAGAGGACCGGCAGCT	58.210	50.000	0.00	0.00	0.00	4.24
118	120	5.930837	TCTTCCTTCAAGAATCTCTCTCC	57.069	43.478	0.00	0.00	38.26	3.71
119	121	4.714308	TCTTCCTTCAAGAATCTCTCTCCC	59.286	45.833	0.00	0.00	38.26	4.30
120	122	4.344938	TCCTTCAAGAATCTCTCTCCCT	57.655	45.455	0.00	0.00	31.02	4.20
121	123	4.285863	TCCTTCAAGAATCTCTCTCCCTC	58.714	47.826	0.00	0.00	31.02	4.30
122	124	4.016666	TCCTTCAAGAATCTCTCTCCCTCT	60.017	45.833	0.00	0.00	31.02	3.69
123	125	4.342092	CCTTCAAGAATCTCTCTCCCTCTC	59.658	50.000	0.00	0.00	31.02	3.20
152	158	4.785512	AGCGCCGCTCGACTCTTG	62.786	66.667	5.39	0.00	41.67	3.02
156	162	2.048222	CCGCTCGACTCTTGGCAA	60.048	61.111	0.00	0.00	0.00	4.52
159	165	2.383527	GCTCGACTCTTGGCAACCG	61.384	63.158	0.00	0.00	0.00	4.44
367	379	1.070108	GTCTCCGTTTCCGTTTGCTTC	60.070	52.381	0.00	0.00	0.00	3.86
458	470	6.703607	AGTTGCTTCAATAGATTCGATACTGG	59.296	38.462	0.00	0.00	0.00	4.00
494	506	1.338020	GAAGGGAGTTGGTGTTGCTTG	59.662	52.381	0.00	0.00	0.00	4.01
564	576	1.067142	TCCGTTGGAGGTTCAGATTCG	60.067	52.381	0.00	0.00	0.00	3.34
588	600	3.680490	TGGGTTTCGATGTGCTCAAATA	58.320	40.909	0.00	0.00	0.00	1.40
591	603	5.184864	TGGGTTTCGATGTGCTCAAATATTT	59.815	36.000	0.00	0.00	0.00	1.40
791	808	7.011482	AGTGACGAATCTTACATGAATAAAGCC	59.989	37.037	0.00	0.00	0.00	4.35
821	838	9.573133	CTGATAATGAATTGACCTGTTAAAACC	57.427	33.333	0.00	0.00	0.00	3.27
995	1013	1.259609	ACATCATTTGCAGGTGGTGG	58.740	50.000	15.42	3.28	30.76	4.61
1026	1044	3.306433	GGTTGTGGTCTCTCCTTCTTCTC	60.306	52.174	0.00	0.00	37.07	2.87
1044	1062	2.158682	TCTCCTTGTTTGCTTGCCTACA	60.159	45.455	0.00	0.00	0.00	2.74
1125	1143	1.354040	CTGCGACCAGTGATGAGTTC	58.646	55.000	0.00	0.00	34.31	3.01
1282	1300	7.626144	TTTTACGCAAATTACTAAGTTTGGC	57.374	32.000	0.00	0.00	36.19	4.52
1329	1347	5.105473	TGACTAATCCGTTGCTAGCTAAAGT	60.105	40.000	17.23	7.83	0.00	2.66
1411	1429	7.392418	ACAACTCCCCTATTTTCTACTGTAAC	58.608	38.462	0.00	0.00	0.00	2.50
1429	1447	0.930726	ACTTGTTCCCCCACCTTTCA	59.069	50.000	0.00	0.00	0.00	2.69
1430	1448	1.289530	ACTTGTTCCCCCACCTTTCAA	59.710	47.619	0.00	0.00	0.00	2.69
1431	1449	2.090775	ACTTGTTCCCCCACCTTTCAAT	60.091	45.455	0.00	0.00	0.00	2.57
1432	1450	2.008242	TGTTCCCCCACCTTTCAATG	57.992	50.000	0.00	0.00	0.00	2.82
1433	1451	1.501170	TGTTCCCCCACCTTTCAATGA	59.499	47.619	0.00	0.00	0.00	2.57
1434	1452	2.091055	TGTTCCCCCACCTTTCAATGAA	60.091	45.455	0.00	0.00	0.00	2.57
1435	1453	3.173151	GTTCCCCCACCTTTCAATGAAT	58.827	45.455	0.00	0.00	0.00	2.57
1747	1808	8.119891	AGTGGGTATAGGGTTATTTTTGTCATT	58.880	33.333	0.00	0.00	0.00	2.57
1758	1821	9.651913	GGTTATTTTTGTCATTACATGGTCAAT	57.348	29.630	0.00	0.00	34.97	2.57
1801	1864	3.986996	TGTCTGATGGCATTTCTGAGA	57.013	42.857	0.00	0.00	0.00	3.27
1954	2017	7.436320	AGTGGCATAAATGATAAAAACCCAT	57.564	32.000	0.00	0.00	0.00	4.00
1955	2018	7.274447	AGTGGCATAAATGATAAAAACCCATG	58.726	34.615	0.00	0.00	0.00	3.66
2105	2168	4.445452	AACAATAATTGAGCTGCCACTG	57.555	40.909	0.00	0.00	0.00	3.66
2384	2447	1.322442	AGGCTTCAAGTGGCTTGTTC	58.678	50.000	8.48	0.79	41.66	3.18
2612	2676	8.218423	ACCCCCATCATCTTTCTTTTAAAATT	57.782	30.769	0.09	0.00	0.00	1.82
2840	2904	8.820831	TGGGAATTTGGTAATACATTGTCAAAT	58.179	29.630	7.30	7.30	36.37	2.32
2876	2940	4.826600	CTCGCAAAGCAAGGAACG	57.173	55.556	0.00	0.00	0.00	3.95
2915	2979	7.148639	GCAAAGCGCTATATAAGTAACTATGCA	60.149	37.037	12.05	0.00	37.77	3.96
2916	2980	8.376203	CAAAGCGCTATATAAGTAACTATGCAG	58.624	37.037	12.05	0.00	0.00	4.41
2976	3041	1.503542	GCGTGGGAGCTGAACAATG	59.496	57.895	0.00	0.00	0.00	2.82
3011	3076	4.025229	TGGTTGAACTTCAAAAGATCGTCG	60.025	41.667	5.76	0.00	38.22	5.12
3454	3519	7.127339	TCCTGGATAGCTTCTGGTAATTACTTT	59.873	37.037	15.05	0.00	0.00	2.66
3699	3767	3.998341	TGCCAGAAACATACTTTACCGTC	59.002	43.478	0.00	0.00	0.00	4.79
4012	4080	0.673644	CCATGGTCACCGTCAGGAAC	60.674	60.000	2.57	0.00	41.02	3.62
4045	4113	3.785859	CTAGCGCAAGGGCAGGGA	61.786	66.667	11.47	0.00	41.24	4.20
4464	4532	1.474330	CCAATTGGGCCACCTAAGTC	58.526	55.000	17.36	0.00	37.76	3.01
4613	4751	9.807649	ATAATTTGGCTGTAAACAGAAATGATC	57.192	29.630	14.21	0.00	46.59	2.92
4701	5074	4.741321	AACAATATGGCCAAATGACTGG	57.259	40.909	10.96	0.00	39.71	4.00
4717	5090	0.240145	CTGGTGCTGTCACATGCAAG	59.760	55.000	3.82	0.00	44.87	4.01
4718	5091	0.466007	TGGTGCTGTCACATGCAAGT	60.466	50.000	3.82	0.00	44.87	3.16
4719	5092	0.039798	GGTGCTGTCACATGCAAGTG	60.040	55.000	15.79	15.79	44.87	3.16
4720	5093	0.662374	GTGCTGTCACATGCAAGTGC	60.662	55.000	17.03	12.35	42.66	4.40
4733	5106	3.727780	GCAAGTGCATGCAAAATAACC	57.272	42.857	24.58	8.13	45.70	2.85
4734	5107	3.328505	GCAAGTGCATGCAAAATAACCT	58.671	40.909	24.58	10.63	45.70	3.50
4735	5108	3.368843	GCAAGTGCATGCAAAATAACCTC	59.631	43.478	24.58	6.49	45.70	3.85
4736	5109	4.558178	CAAGTGCATGCAAAATAACCTCA	58.442	39.130	24.58	0.00	0.00	3.86
4737	5110	4.445452	AGTGCATGCAAAATAACCTCAG	57.555	40.909	24.58	0.00	0.00	3.35
4916	5289	5.073311	TCACTCTCCAGCAATTACAGTAC	57.927	43.478	0.00	0.00	0.00	2.73
4946	5319	5.591877	GGACTATCATCAACTCTGCCAAATT	59.408	40.000	0.00	0.00	0.00	1.82
5123	5496	6.435430	TCTGCACATGTAACCAATTATGTC	57.565	37.500	0.00	0.00	31.84	3.06
5319	5692	6.968263	TGGAGATGTTTAAAACCAATGTCA	57.032	33.333	0.00	0.00	0.00	3.58

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	1.304464	CCTTTGAAGCCACTCCCCC	60.304	63.158	0.00	0.00	0.00	5.40
48	49	6.000840	CCTCTTTATATCTCCCTTTGAAGCC	58.999	44.000	0.00	0.00	0.00	4.35
77	79	3.615155	AGAAAAATCTGGAGGTAGCTGC	58.385	45.455	6.48	6.48	0.00	5.25
78	80	4.637977	GGAAGAAAAATCTGGAGGTAGCTG	59.362	45.833	0.00	0.00	0.00	4.24
79	81	4.538089	AGGAAGAAAAATCTGGAGGTAGCT	59.462	41.667	0.00	0.00	0.00	3.32
80	82	4.849518	AGGAAGAAAAATCTGGAGGTAGC	58.150	43.478	0.00	0.00	0.00	3.58
81	83	6.476378	TGAAGGAAGAAAAATCTGGAGGTAG	58.524	40.000	0.00	0.00	0.00	3.18
82	84	6.448369	TGAAGGAAGAAAAATCTGGAGGTA	57.552	37.500	0.00	0.00	0.00	3.08
123	125	2.411290	GGCGCTTCTCCGAGAGAG	59.589	66.667	7.64	1.45	39.98	3.20
138	144	4.742201	TGCCAAGAGTCGAGCGGC	62.742	66.667	7.86	7.86	43.28	6.53
249	255	3.748083	AGAATGCTTGAAGAACAGAGCA	58.252	40.909	0.00	0.00	42.14	4.26
250	256	4.762956	AAGAATGCTTGAAGAACAGAGC	57.237	40.909	0.00	0.00	35.15	4.09
367	379	3.123620	GCAGTGCAGAGAAGGCGG	61.124	66.667	11.09	0.00	0.00	6.13
458	470	3.264964	TCCCTTCCCAACATACACCTAAC	59.735	47.826	0.00	0.00	0.00	2.34
564	576	1.648467	GAGCACATCGAAACCCAGCC	61.648	60.000	0.00	0.00	0.00	4.85
588	600	4.142004	CCTGTACTACCTGTTCCGCTAAAT	60.142	45.833	0.00	0.00	0.00	1.40
591	603	2.291153	ACCTGTACTACCTGTTCCGCTA	60.291	50.000	0.00	0.00	0.00	4.26
791	808	6.446781	ACAGGTCAATTCATTATCAGCTTG	57.553	37.500	0.00	0.00	0.00	4.01
821	838	7.870509	TTCTTCCATATGTCATCTTTTCCAG	57.129	36.000	1.24	0.00	0.00	3.86
995	1013	2.079925	GAGACCACAACCTCATGCTTC	58.920	52.381	0.00	0.00	0.00	3.86
1026	1044	1.956477	AGTGTAGGCAAGCAAACAAGG	59.044	47.619	0.00	0.00	0.00	3.61
1125	1143	2.480073	CCAATCAAGGGTAGCGCAAATG	60.480	50.000	11.47	0.00	0.00	2.32
1282	1300	3.010420	GTCCTGGAAATTCGGAGAAAGG	58.990	50.000	0.00	0.00	45.90	3.11
1329	1347	4.224370	GGTCAGAACACTAACCCTGGATAA	59.776	45.833	0.00	0.00	0.00	1.75
1411	1429	2.080654	TTGAAAGGTGGGGGAACAAG	57.919	50.000	0.00	0.00	0.00	3.16
1429	1447	9.341078	GGCATAAATGATAAAAACCCATTCATT	57.659	29.630	0.00	0.00	38.35	2.57
1430	1448	8.492782	TGGCATAAATGATAAAAACCCATTCAT	58.507	29.630	0.00	0.00	30.93	2.57
1431	1449	7.768120	GTGGCATAAATGATAAAAACCCATTCA	59.232	33.333	0.00	0.00	30.93	2.57
1432	1450	7.986889	AGTGGCATAAATGATAAAAACCCATTC	59.013	33.333	0.00	0.00	30.93	2.67
1433	1451	7.769970	CAGTGGCATAAATGATAAAAACCCATT	59.230	33.333	0.00	0.00	32.46	3.16
1434	1452	7.274447	CAGTGGCATAAATGATAAAAACCCAT	58.726	34.615	0.00	0.00	0.00	4.00
1435	1453	6.351711	CCAGTGGCATAAATGATAAAAACCCA	60.352	38.462	0.00	0.00	0.00	4.51
1758	1821	4.951254	TCGTTATTGTCAGGTCAAACTCA	58.049	39.130	0.00	0.00	0.00	3.41
1954	2017	5.890334	AGACTTTGCGTTTCTTTTCATTCA	58.110	33.333	0.00	0.00	0.00	2.57
1955	2018	6.812481	AAGACTTTGCGTTTCTTTTCATTC	57.188	33.333	0.00	0.00	0.00	2.67
1990	2053	6.016610	TCCATAGGGAGTTGTTTTCTTTTTCG	60.017	38.462	0.00	0.00	38.64	3.46
2384	2447	6.039270	TGGTTATGCATCCTTTAGAAAATCCG	59.961	38.462	0.19	0.00	0.00	4.18
2579	2642	8.539117	AAGAAAGATGATGGGGGTATTTTTAG	57.461	34.615	0.00	0.00	0.00	1.85
2840	2904	5.484173	CGAGCAGCAAATATAGTTTTGGA	57.516	39.130	0.00	0.00	37.13	3.53
2876	2940	2.046313	CGCTTTGCACACATGAAAGAC	58.954	47.619	0.00	0.00	30.63	3.01
2915	2979	7.453752	TCCACTCAGTTCATTACCTAGTAAACT	59.546	37.037	0.00	0.00	31.56	2.66
2916	2980	7.609056	TCCACTCAGTTCATTACCTAGTAAAC	58.391	38.462	0.00	0.00	31.56	2.01
2976	3041	1.001706	GTTCAACCAGGTCTTTTCCGC	60.002	52.381	0.00	0.00	0.00	5.54
3454	3519	4.618460	GCCGTGATAGTCTGTTCTTCTGAA	60.618	45.833	0.00	0.00	0.00	3.02
3660	3728	4.588951	TCTGGCAGGAATATACAGTACAGG	59.411	45.833	15.73	0.00	0.00	4.00
4045	4113	4.082125	CAAAGGAGCTGTCCCTTGTTATT	58.918	43.478	5.98	0.00	45.26	1.40
4099	4167	2.300967	ATCGGAGGCTTTGCTCCCA	61.301	57.895	0.00	0.00	36.44	4.37
4461	4529	9.883142	TTTTCTTTATTGTGAATTTGTTGGACT	57.117	25.926	0.00	0.00	0.00	3.85
4464	4532	8.829612	AGCTTTTCTTTATTGTGAATTTGTTGG	58.170	29.630	0.00	0.00	0.00	3.77
4517	4585	6.934083	AGGAGACAATCTCTTTCTGAAAGTTC	59.066	38.462	24.88	14.38	42.95	3.01
4610	4748	5.505324	GGTTGATCAGCAGCAGTTTATGATC	60.505	44.000	11.93	11.42	44.15	2.92
4613	4751	3.181493	GGGTTGATCAGCAGCAGTTTATG	60.181	47.826	11.93	0.00	0.00	1.90
4701	5074	0.662374	GCACTTGCATGTGACAGCAC	60.662	55.000	30.70	12.17	41.05	4.40
4717	5090	4.439305	TCTGAGGTTATTTTGCATGCAC	57.561	40.909	22.58	7.61	0.00	4.57
4718	5091	5.419788	AGATTCTGAGGTTATTTTGCATGCA	59.580	36.000	18.46	18.46	0.00	3.96
4719	5092	5.899299	AGATTCTGAGGTTATTTTGCATGC	58.101	37.500	11.82	11.82	0.00	4.06
4720	5093	7.066645	TCTGAGATTCTGAGGTTATTTTGCATG	59.933	37.037	0.07	0.00	0.00	4.06
4722	5095	6.475504	TCTGAGATTCTGAGGTTATTTTGCA	58.524	36.000	0.07	0.00	0.00	4.08
4723	5096	6.992063	TCTGAGATTCTGAGGTTATTTTGC	57.008	37.500	0.07	0.00	0.00	3.68
4775	5148	8.186163	GTGATCATCTCAAATGAAATACTTGCA	58.814	33.333	0.00	0.00	35.07	4.08
4813	5186	4.469657	ACATTTTGCACCCAGTCTTTCTA	58.530	39.130	0.00	0.00	0.00	2.10

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.