Multiple sequence alignment - TraesCS5D01G085500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G085500 chr5D 100.000 7115 0 0 1 7115 90319325 90312211 0.000000e+00 13140.0
1 TraesCS5D01G085500 chr5D 98.425 127 2 0 5057 5183 179325940 179325814 2.580000e-54 224.0
2 TraesCS5D01G085500 chr5B 90.054 3710 249 43 441 4072 94120275 94123942 0.000000e+00 4697.0
3 TraesCS5D01G085500 chr5B 92.054 1271 54 20 5190 6417 94124873 94126139 0.000000e+00 1744.0
4 TraesCS5D01G085500 chr5B 93.857 586 25 6 4356 4935 94124227 94124807 0.000000e+00 872.0
5 TraesCS5D01G085500 chr5B 90.049 412 35 6 1 408 94112823 94113232 4.890000e-146 529.0
6 TraesCS5D01G085500 chr5B 89.130 368 28 6 6417 6784 94126450 94126805 1.410000e-121 448.0
7 TraesCS5D01G085500 chr5B 93.750 240 9 2 4131 4364 94123960 94124199 8.780000e-94 355.0
8 TraesCS5D01G085500 chr5B 96.154 52 2 0 5001 5052 94124807 94124858 1.270000e-12 86.1
9 TraesCS5D01G085500 chr5A 93.599 2234 119 13 1861 4081 84119320 84117098 0.000000e+00 3312.0
10 TraesCS5D01G085500 chr5A 91.679 1394 75 13 385 1766 84120837 84119473 0.000000e+00 1893.0
11 TraesCS5D01G085500 chr5A 91.410 1071 62 19 5451 6505 84116047 84114991 0.000000e+00 1441.0
12 TraesCS5D01G085500 chr5A 88.532 654 35 20 4133 4772 84117086 84116459 0.000000e+00 756.0
13 TraesCS5D01G085500 chr5A 92.644 503 29 6 3 502 84122368 84121871 0.000000e+00 717.0
14 TraesCS5D01G085500 chr5A 87.140 451 55 2 6667 7115 84114428 84113979 6.370000e-140 508.0
15 TraesCS5D01G085500 chr5A 91.489 47 4 0 4843 4889 382114855 382114901 1.660000e-06 65.8
16 TraesCS5D01G085500 chr3B 79.278 637 85 28 6493 7114 351289857 351290461 1.110000e-107 401.0
17 TraesCS5D01G085500 chr3D 78.584 565 88 14 6493 7047 256987836 256987295 6.830000e-90 342.0
18 TraesCS5D01G085500 chr3D 93.478 46 3 0 4844 4889 346980113 346980158 1.280000e-07 69.4
19 TraesCS5D01G085500 chr7B 99.213 127 1 0 5057 5183 332242762 332242888 5.550000e-56 230.0
20 TraesCS5D01G085500 chr7B 93.103 145 8 2 5041 5185 581494438 581494580 2.010000e-50 211.0
21 TraesCS5D01G085500 chr4A 99.213 127 1 0 5057 5183 177639012 177639138 5.550000e-56 230.0
22 TraesCS5D01G085500 chr4A 90.385 52 2 1 4836 4887 662286509 662286461 1.660000e-06 65.8
23 TraesCS5D01G085500 chr6B 98.425 127 2 0 5057 5183 81012143 81012017 2.580000e-54 224.0
24 TraesCS5D01G085500 chr6B 96.992 133 3 1 5057 5188 194643414 194643282 9.290000e-54 222.0
25 TraesCS5D01G085500 chr1B 96.992 133 4 0 5053 5185 626226875 626227007 2.580000e-54 224.0
26 TraesCS5D01G085500 chr1B 88.136 59 7 0 4890 4948 392830030 392829972 3.560000e-08 71.3
27 TraesCS5D01G085500 chr3A 96.296 135 4 1 5054 5188 52198853 52198986 3.340000e-53 220.0
28 TraesCS5D01G085500 chr3A 91.803 61 4 1 4889 4949 466113694 466113635 4.570000e-12 84.2
29 TraesCS5D01G085500 chr2B 88.202 178 14 5 5051 5224 373109809 373109635 9.360000e-49 206.0
30 TraesCS5D01G085500 chr2B 90.625 64 6 0 4885 4948 800419240 800419177 1.270000e-12 86.1
31 TraesCS5D01G085500 chr7A 98.039 51 1 0 2329 2379 119611156 119611106 9.830000e-14 89.8
32 TraesCS5D01G085500 chr7A 90.769 65 6 0 4885 4949 510629778 510629842 3.540000e-13 87.9
33 TraesCS5D01G085500 chr4D 82.407 108 13 5 4846 4948 479687865 479687759 9.830000e-14 89.8
34 TraesCS5D01G085500 chr4D 88.889 63 6 1 4886 4948 5067849 5067910 7.650000e-10 76.8
35 TraesCS5D01G085500 chr1D 96.078 51 2 0 4839 4889 410795995 410795945 4.570000e-12 84.2
36 TraesCS5D01G085500 chr1D 87.719 57 6 1 4846 4901 389264801 389264745 1.660000e-06 65.8
37 TraesCS5D01G085500 chr1A 88.136 59 7 0 4890 4948 7287113 7287171 3.560000e-08 71.3
38 TraesCS5D01G085500 chr6A 86.154 65 8 1 4885 4948 8597892 8597828 1.280000e-07 69.4
39 TraesCS5D01G085500 chr2A 93.478 46 3 0 4844 4889 777266877 777266832 1.280000e-07 69.4
40 TraesCS5D01G085500 chr6D 90.000 50 3 2 4840 4887 378261539 378261490 5.960000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G085500 chr5D 90312211 90319325 7114 True 13140.000000 13140 100.000000 1 7115 1 chr5D.!!$R1 7114
1 TraesCS5D01G085500 chr5B 94120275 94126805 6530 False 1367.016667 4697 92.499833 441 6784 6 chr5B.!!$F2 6343
2 TraesCS5D01G085500 chr5A 84113979 84122368 8389 True 1437.833333 3312 90.834000 3 7115 6 chr5A.!!$R1 7112
3 TraesCS5D01G085500 chr3B 351289857 351290461 604 False 401.000000 401 79.278000 6493 7114 1 chr3B.!!$F1 621
4 TraesCS5D01G085500 chr3D 256987295 256987836 541 True 342.000000 342 78.584000 6493 7047 1 chr3D.!!$R1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 1748 0.445436 CATCAGTGCTCCGTTGAAGC 59.555 55.000 0.00 0.00 0.00 3.86 F
1231 2424 0.099613 CTGTCTCCAGGTGATCGTCG 59.900 60.000 0.00 0.00 34.90 5.12 F
1499 2712 0.467384 CCCATCAGGTCAAGCTCGAT 59.533 55.000 0.00 0.00 0.00 3.59 F
1566 2779 1.063027 CAACGCTGATGCATACAGTGG 59.937 52.381 27.82 20.28 46.13 4.00 F
2559 3838 1.285078 GTATTCTTCAAGGGCCCCAGT 59.715 52.381 21.43 0.00 0.00 4.00 F
3243 4527 0.102120 CTTCAGCCGGTTTGTTTGCA 59.898 50.000 1.90 0.00 0.00 4.08 F
3756 5067 0.391597 GTCCCAGGTTTGTGACTCGA 59.608 55.000 0.00 0.00 30.16 4.04 F
5184 6552 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 2779 0.037975 CCACCCTGCAAAATCAGCAC 60.038 55.0 0.00 0.0 37.02 4.40 R
2586 3865 0.248458 GCACACCAACAACCTGTTCG 60.248 55.0 0.00 0.0 38.77 3.95 R
2709 3988 0.391661 ATGCGCAGGTCATTTCGTCT 60.392 50.0 18.32 0.0 0.00 4.18 R
3228 4512 1.039856 ATCTTGCAAACAAACCGGCT 58.960 45.0 0.00 0.0 34.74 5.52 R
4248 5568 1.086696 GCACATCGCCACTTGTGTAT 58.913 50.0 5.11 0.0 44.01 2.29 R
5165 6533 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.0 0.00 0.0 0.00 3.46 R
5713 7222 0.106708 TTTCTCTCGCAGCAACCTGT 59.893 50.0 0.00 0.0 41.26 4.00 R
6578 8419 0.036765 AGTCAATCGCACGGGCTTTA 60.037 50.0 8.62 0.0 38.10 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.305046 AACCAGGAGGGACGACGAT 60.305 57.895 0.00 0.00 41.15 3.73
49 50 1.139095 GAGGGACGACGATGACCAC 59.861 63.158 0.00 0.00 0.00 4.16
106 108 4.373116 GCGAGCGAGGGGACACAA 62.373 66.667 0.00 0.00 0.00 3.33
126 128 1.594293 ACCAACTGTTGCGTCCTCG 60.594 57.895 14.94 2.42 40.37 4.63
143 145 2.125512 GCCATGAAGAGGCGACGT 60.126 61.111 0.00 0.00 43.15 4.34
191 193 0.594540 GTTGCAATGCAGCACGAACA 60.595 50.000 17.03 0.00 45.61 3.18
332 334 4.170062 CCGCAATGCCGCACTCAG 62.170 66.667 0.00 0.00 0.00 3.35
333 335 4.170062 CGCAATGCCGCACTCAGG 62.170 66.667 0.00 0.00 0.00 3.86
353 355 2.435059 GAGACTGGGTTGCTCGCC 60.435 66.667 0.00 0.00 0.00 5.54
356 358 4.681978 ACTGGGTTGCTCGCCGTC 62.682 66.667 0.00 0.00 0.00 4.79
361 363 2.551270 GTTGCTCGCCGTCTGTTG 59.449 61.111 0.00 0.00 0.00 3.33
362 364 2.108157 TTGCTCGCCGTCTGTTGT 59.892 55.556 0.00 0.00 0.00 3.32
457 1613 2.401766 GCTGTGACGGGGATGCAAG 61.402 63.158 0.00 0.00 0.00 4.01
458 1614 1.746615 CTGTGACGGGGATGCAAGG 60.747 63.158 0.00 0.00 0.00 3.61
592 1748 0.445436 CATCAGTGCTCCGTTGAAGC 59.555 55.000 0.00 0.00 0.00 3.86
668 1832 2.990479 CTGGCTAGGCGGGAAGTT 59.010 61.111 17.28 0.00 0.00 2.66
771 1954 6.233430 AGCTATATGTGCAATCAAATCGAC 57.767 37.500 0.00 0.00 0.00 4.20
924 2107 1.115930 ATAGCCTAGGGACAGCACCG 61.116 60.000 11.72 0.00 0.00 4.94
1008 2191 1.157870 CGCCCCGTGGTATGACAATC 61.158 60.000 0.00 0.00 0.00 2.67
1036 2219 6.440010 CACACTCTCATATCATATCTTCCCCT 59.560 42.308 0.00 0.00 0.00 4.79
1069 2252 3.181169 GACCAACGCACAGCACCAC 62.181 63.158 0.00 0.00 0.00 4.16
1070 2253 3.208383 CCAACGCACAGCACCACA 61.208 61.111 0.00 0.00 0.00 4.17
1073 2256 3.107104 AACGCACAGCACCACAACG 62.107 57.895 0.00 0.00 0.00 4.10
1137 2330 0.385751 GATCGAGAGGGATGAACGCA 59.614 55.000 0.00 0.00 0.00 5.24
1231 2424 0.099613 CTGTCTCCAGGTGATCGTCG 59.900 60.000 0.00 0.00 34.90 5.12
1266 2473 2.372890 CCTCTGCTGCCCATCTCCA 61.373 63.158 0.00 0.00 0.00 3.86
1286 2493 6.154534 TCTCCATTCTCTCGTTCTTGGATTAA 59.845 38.462 0.00 0.00 33.10 1.40
1294 2501 5.525012 TCTCGTTCTTGGATTAATGATGCTG 59.475 40.000 0.00 0.00 0.00 4.41
1300 2513 9.374838 GTTCTTGGATTAATGATGCTGAAATTT 57.625 29.630 0.00 0.00 0.00 1.82
1432 2645 1.801913 CGGCTCGTCACCTTTCTCG 60.802 63.158 0.00 0.00 0.00 4.04
1499 2712 0.467384 CCCATCAGGTCAAGCTCGAT 59.533 55.000 0.00 0.00 0.00 3.59
1550 2763 1.462616 TCCAATGGGAATCTGCAACG 58.537 50.000 0.00 0.00 41.32 4.10
1566 2779 1.063027 CAACGCTGATGCATACAGTGG 59.937 52.381 27.82 20.28 46.13 4.00
1671 2884 2.026262 TCTCAAGGCTTACAATCCCCAC 60.026 50.000 0.00 0.00 0.00 4.61
1736 2949 5.474876 AGTCTCAGTTTCCTATTGGCTTTTG 59.525 40.000 0.00 0.00 0.00 2.44
1989 3262 3.181434 TGCTTCATACAAGAACCAGGGTT 60.181 43.478 2.75 2.75 41.54 4.11
2021 3294 2.815503 TCTACCGTCGATTCTTGACACA 59.184 45.455 0.00 0.00 36.11 3.72
2022 3295 2.519377 ACCGTCGATTCTTGACACAA 57.481 45.000 0.00 0.00 36.11 3.33
2028 3301 4.150627 CGTCGATTCTTGACACAATTCTGT 59.849 41.667 0.00 0.00 36.11 3.41
2145 3418 2.934364 GCAAGTGAGTGCTGCTATGACT 60.934 50.000 0.00 0.00 41.51 3.41
2148 3421 3.092301 AGTGAGTGCTGCTATGACTACA 58.908 45.455 0.00 0.00 0.00 2.74
2154 3427 2.141517 GCTGCTATGACTACATGCCAG 58.858 52.381 0.00 0.00 38.13 4.85
2155 3428 2.224137 GCTGCTATGACTACATGCCAGA 60.224 50.000 0.00 0.00 37.74 3.86
2262 3537 8.045720 ACTAATGATCCAGGTTTACCATATGT 57.954 34.615 1.24 0.00 38.89 2.29
2270 3545 9.881773 ATCCAGGTTTACCATATGTCAATAATT 57.118 29.630 1.24 0.00 38.89 1.40
2379 3658 7.507797 TTTCAAACCCATCAAATATCCCATT 57.492 32.000 0.00 0.00 0.00 3.16
2420 3699 3.376859 TGGTTCTGTTAACACTGCACTTG 59.623 43.478 3.59 0.00 0.00 3.16
2513 3792 8.788325 AACTGTAAGACCAAGGTAATGTATTC 57.212 34.615 0.00 0.00 37.43 1.75
2515 3794 7.822822 ACTGTAAGACCAAGGTAATGTATTCAC 59.177 37.037 0.00 0.00 37.43 3.18
2522 3801 8.747538 ACCAAGGTAATGTATTCACTTAATCC 57.252 34.615 0.00 0.00 0.00 3.01
2559 3838 1.285078 GTATTCTTCAAGGGCCCCAGT 59.715 52.381 21.43 0.00 0.00 4.00
2586 3865 7.589958 TCTCTCAGGGACTAATGTCTTTATC 57.410 40.000 0.00 0.00 42.54 1.75
2595 3874 6.817140 GGACTAATGTCTTTATCGAACAGGTT 59.183 38.462 0.00 0.00 42.54 3.50
2643 3922 3.730715 GCGATCTCAAAAACCAGTTTGTG 59.269 43.478 7.05 7.05 39.16 3.33
2709 3988 6.940298 ACTGGATTCCACGAGAAATTTTCTAA 59.060 34.615 11.55 3.11 40.87 2.10
3049 4330 7.277760 CGAACATGGTATGAGTCATCAAACTTA 59.722 37.037 9.42 0.00 39.39 2.24
3228 4512 6.934645 CAGAATTAGGTTTGTACAGTCCTTCA 59.065 38.462 20.61 11.81 0.00 3.02
3243 4527 0.102120 CTTCAGCCGGTTTGTTTGCA 59.898 50.000 1.90 0.00 0.00 4.08
3264 4548 4.320788 GCAAGATTAGCTGAACACTTTGCT 60.321 41.667 0.00 0.00 39.30 3.91
3270 4554 7.555554 AGATTAGCTGAACACTTTGCTCATAAT 59.444 33.333 0.00 0.00 37.02 1.28
3271 4555 5.972107 AGCTGAACACTTTGCTCATAATT 57.028 34.783 0.00 0.00 0.00 1.40
3272 4556 6.336842 AGCTGAACACTTTGCTCATAATTT 57.663 33.333 0.00 0.00 0.00 1.82
3273 4557 6.752168 AGCTGAACACTTTGCTCATAATTTT 58.248 32.000 0.00 0.00 0.00 1.82
3274 4558 7.212274 AGCTGAACACTTTGCTCATAATTTTT 58.788 30.769 0.00 0.00 0.00 1.94
3275 4559 8.359642 AGCTGAACACTTTGCTCATAATTTTTA 58.640 29.630 0.00 0.00 0.00 1.52
3276 4560 8.977505 GCTGAACACTTTGCTCATAATTTTTAA 58.022 29.630 0.00 0.00 0.00 1.52
3440 4750 5.304686 TGGTTCTGGCCACCTAATAATAG 57.695 43.478 0.00 0.00 35.07 1.73
3477 4787 9.762381 ATAACTTTGGTTCCACCTTATTCATTA 57.238 29.630 0.00 0.00 39.58 1.90
3549 4859 5.639506 CCTGTTACAGAGATACCAACACAAG 59.360 44.000 14.66 0.00 32.44 3.16
3566 4876 4.314440 GTGTCTCCGTGGGCAGCA 62.314 66.667 0.00 0.00 0.00 4.41
3655 4965 7.864108 TTGCATACTGTTATGACATTAGCTT 57.136 32.000 0.00 0.00 37.86 3.74
3731 5042 4.613925 TCAAGAATCTGACAACTCTGCT 57.386 40.909 0.00 0.00 0.00 4.24
3756 5067 0.391597 GTCCCAGGTTTGTGACTCGA 59.608 55.000 0.00 0.00 30.16 4.04
3757 5068 0.679505 TCCCAGGTTTGTGACTCGAG 59.320 55.000 11.84 11.84 0.00 4.04
3772 5083 2.159170 ACTCGAGATGCTCTTAGTTGCC 60.159 50.000 21.68 0.00 0.00 4.52
3776 5088 3.262420 GAGATGCTCTTAGTTGCCGAAA 58.738 45.455 0.00 0.00 0.00 3.46
3791 5103 6.594937 AGTTGCCGAAATTTTATCATGCAATT 59.405 30.769 0.00 0.00 36.90 2.32
3798 5110 7.899330 CGAAATTTTATCATGCAATTGTTGGTC 59.101 33.333 7.40 0.00 0.00 4.02
3810 5122 2.613026 TGTTGGTCTCACATTGTCGT 57.387 45.000 0.00 0.00 0.00 4.34
3826 5139 6.260050 ACATTGTCGTTTTACAGATTGACACT 59.740 34.615 0.00 0.00 36.21 3.55
3829 5142 5.462068 TGTCGTTTTACAGATTGACACTGAG 59.538 40.000 0.00 0.00 38.55 3.35
3868 5181 8.180267 CACTTGGTAGAAGCAGAAATGATAAAG 58.820 37.037 0.00 0.00 0.00 1.85
3886 5199 8.370493 TGATAAAGAGAACAGTGAGTTTTCAG 57.630 34.615 0.00 0.00 42.23 3.02
3894 5207 2.031333 CAGTGAGTTTTCAGGCTTCTGC 60.031 50.000 0.00 0.00 38.36 4.26
3927 5242 6.036577 TGGGTTTTAAATTTCAGGATCAGC 57.963 37.500 0.00 0.00 0.00 4.26
4075 5390 3.840890 CGCTTATGTAAGGGTTGCAAA 57.159 42.857 0.00 0.00 40.23 3.68
4078 5393 5.167845 CGCTTATGTAAGGGTTGCAAATTT 58.832 37.500 0.00 0.00 40.23 1.82
4081 5396 7.491048 CGCTTATGTAAGGGTTGCAAATTTTAT 59.509 33.333 0.00 0.00 40.23 1.40
4083 5398 9.651913 CTTATGTAAGGGTTGCAAATTTTATGT 57.348 29.630 0.00 0.00 0.00 2.29
4087 5402 9.832445 TGTAAGGGTTGCAAATTTTATGTTAAA 57.168 25.926 0.00 0.00 0.00 1.52
4248 5568 3.039011 GTGGCTAATCTCAAGGACCCTA 58.961 50.000 0.00 0.00 0.00 3.53
4408 5769 7.187824 TGGTATGGAATCCATCTTATCTAGC 57.812 40.000 19.39 9.44 40.74 3.42
4458 5819 4.558226 TCATGTACATTGGAGAAGCAGT 57.442 40.909 5.37 0.00 0.00 4.40
4476 5837 9.987272 AGAAGCAGTTAAGCAAGAATTATTTTT 57.013 25.926 0.00 0.00 36.85 1.94
4557 5918 5.706369 TCTTGTCAACTACTCCAGACTACTC 59.294 44.000 0.00 0.00 32.41 2.59
4776 6143 6.014156 GGGAAGGCATATGAGTAAGTCTATGT 60.014 42.308 6.97 0.00 0.00 2.29
4897 6265 7.509231 CGTTTTTGCAGTTTAAATCGTTTTTGC 60.509 33.333 6.46 6.46 0.00 3.68
4913 6281 8.912787 TCGTTTTTGCAGTTCAATTTAAACTA 57.087 26.923 3.31 0.00 35.25 2.24
4942 6310 8.928270 AAACGTCTTATATTTAGTCACAGAGG 57.072 34.615 0.00 0.00 0.00 3.69
4943 6311 7.040473 ACGTCTTATATTTAGTCACAGAGGG 57.960 40.000 0.00 0.00 0.00 4.30
4944 6312 6.832384 ACGTCTTATATTTAGTCACAGAGGGA 59.168 38.462 0.00 0.00 0.00 4.20
4945 6313 7.013464 ACGTCTTATATTTAGTCACAGAGGGAG 59.987 40.741 0.00 0.00 0.00 4.30
4946 6314 7.013464 CGTCTTATATTTAGTCACAGAGGGAGT 59.987 40.741 0.00 0.00 0.00 3.85
4947 6315 9.352191 GTCTTATATTTAGTCACAGAGGGAGTA 57.648 37.037 0.00 0.00 0.00 2.59
4950 6318 9.877222 TTATATTTAGTCACAGAGGGAGTATCA 57.123 33.333 0.00 0.00 36.25 2.15
4951 6319 5.916661 TTTAGTCACAGAGGGAGTATCAC 57.083 43.478 0.00 0.00 40.51 3.06
4952 6320 3.458044 AGTCACAGAGGGAGTATCACA 57.542 47.619 0.00 0.00 45.06 3.58
4953 6321 3.360867 AGTCACAGAGGGAGTATCACAG 58.639 50.000 0.00 0.00 45.06 3.66
4954 6322 3.010696 AGTCACAGAGGGAGTATCACAGA 59.989 47.826 0.00 0.00 45.06 3.41
4955 6323 3.764434 GTCACAGAGGGAGTATCACAGAA 59.236 47.826 0.00 0.00 45.06 3.02
4956 6324 4.019858 TCACAGAGGGAGTATCACAGAAG 58.980 47.826 0.00 0.00 45.06 2.85
4957 6325 4.019858 CACAGAGGGAGTATCACAGAAGA 58.980 47.826 0.00 0.00 45.06 2.87
4958 6326 4.020543 ACAGAGGGAGTATCACAGAAGAC 58.979 47.826 0.00 0.00 45.06 3.01
4959 6327 4.019858 CAGAGGGAGTATCACAGAAGACA 58.980 47.826 0.00 0.00 45.06 3.41
4960 6328 4.020543 AGAGGGAGTATCACAGAAGACAC 58.979 47.826 0.00 0.00 45.06 3.67
4961 6329 4.020543 GAGGGAGTATCACAGAAGACACT 58.979 47.826 0.00 0.00 45.06 3.55
4962 6330 4.421131 AGGGAGTATCACAGAAGACACTT 58.579 43.478 0.00 0.00 45.06 3.16
4963 6331 4.841246 AGGGAGTATCACAGAAGACACTTT 59.159 41.667 0.00 0.00 45.06 2.66
4964 6332 5.308237 AGGGAGTATCACAGAAGACACTTTT 59.692 40.000 0.00 0.00 45.06 2.27
4965 6333 5.998363 GGGAGTATCACAGAAGACACTTTTT 59.002 40.000 0.00 0.00 39.41 1.94
4986 6354 7.899648 TTTTTCAGTGTCCAACCCTAATTAA 57.100 32.000 0.00 0.00 0.00 1.40
4987 6355 8.485578 TTTTTCAGTGTCCAACCCTAATTAAT 57.514 30.769 0.00 0.00 0.00 1.40
4988 6356 8.485578 TTTTCAGTGTCCAACCCTAATTAATT 57.514 30.769 5.89 5.89 0.00 1.40
4989 6357 7.696992 TTCAGTGTCCAACCCTAATTAATTC 57.303 36.000 3.39 0.00 0.00 2.17
4990 6358 6.785076 TCAGTGTCCAACCCTAATTAATTCA 58.215 36.000 3.39 0.00 0.00 2.57
4991 6359 7.410174 TCAGTGTCCAACCCTAATTAATTCAT 58.590 34.615 3.39 0.00 0.00 2.57
4992 6360 8.553153 TCAGTGTCCAACCCTAATTAATTCATA 58.447 33.333 3.39 0.00 0.00 2.15
4993 6361 8.621286 CAGTGTCCAACCCTAATTAATTCATAC 58.379 37.037 3.39 0.00 0.00 2.39
4994 6362 7.778382 AGTGTCCAACCCTAATTAATTCATACC 59.222 37.037 3.39 0.00 0.00 2.73
4995 6363 7.558444 GTGTCCAACCCTAATTAATTCATACCA 59.442 37.037 3.39 0.00 0.00 3.25
4996 6364 7.777910 TGTCCAACCCTAATTAATTCATACCAG 59.222 37.037 3.39 0.00 0.00 4.00
4997 6365 7.996644 GTCCAACCCTAATTAATTCATACCAGA 59.003 37.037 3.39 0.00 0.00 3.86
4998 6366 7.996644 TCCAACCCTAATTAATTCATACCAGAC 59.003 37.037 3.39 0.00 0.00 3.51
4999 6367 7.777910 CCAACCCTAATTAATTCATACCAGACA 59.222 37.037 3.39 0.00 0.00 3.41
5000 6368 9.354673 CAACCCTAATTAATTCATACCAGACAT 57.645 33.333 3.39 0.00 0.00 3.06
5059 6427 9.368416 TGGCTATATCTACATCAGTTTTCTACT 57.632 33.333 0.00 0.00 37.68 2.57
5061 6429 9.849166 GCTATATCTACATCAGTTTTCTACTCC 57.151 37.037 0.00 0.00 33.85 3.85
5064 6432 6.777213 TCTACATCAGTTTTCTACTCCCTC 57.223 41.667 0.00 0.00 33.85 4.30
5065 6433 6.494952 TCTACATCAGTTTTCTACTCCCTCT 58.505 40.000 0.00 0.00 33.85 3.69
5066 6434 5.413309 ACATCAGTTTTCTACTCCCTCTG 57.587 43.478 0.00 0.00 33.85 3.35
5068 6436 5.046950 ACATCAGTTTTCTACTCCCTCTGTC 60.047 44.000 0.00 0.00 33.85 3.51
5069 6437 3.833070 TCAGTTTTCTACTCCCTCTGTCC 59.167 47.826 0.00 0.00 33.85 4.02
5071 6439 1.848652 TTTCTACTCCCTCTGTCCGG 58.151 55.000 0.00 0.00 0.00 5.14
5072 6440 0.997363 TTCTACTCCCTCTGTCCGGA 59.003 55.000 0.00 0.00 0.00 5.14
5073 6441 0.997363 TCTACTCCCTCTGTCCGGAA 59.003 55.000 5.23 0.00 0.00 4.30
5074 6442 1.356738 TCTACTCCCTCTGTCCGGAAA 59.643 52.381 5.23 0.00 0.00 3.13
5075 6443 2.024273 TCTACTCCCTCTGTCCGGAAAT 60.024 50.000 5.23 0.00 0.00 2.17
5076 6444 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
5077 6445 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
5078 6446 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
5079 6447 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
5080 6448 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
5081 6449 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
5082 6450 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
5083 6451 3.056107 CCTCTGTCCGGAAATACTTGTCA 60.056 47.826 5.23 0.00 0.00 3.58
5084 6452 4.383118 CCTCTGTCCGGAAATACTTGTCAT 60.383 45.833 5.23 0.00 0.00 3.06
5085 6453 4.755411 TCTGTCCGGAAATACTTGTCATC 58.245 43.478 5.23 0.00 0.00 2.92
5086 6454 4.221924 TCTGTCCGGAAATACTTGTCATCA 59.778 41.667 5.23 0.00 0.00 3.07
5087 6455 4.900684 TGTCCGGAAATACTTGTCATCAA 58.099 39.130 5.23 0.00 0.00 2.57
5088 6456 5.309638 TGTCCGGAAATACTTGTCATCAAA 58.690 37.500 5.23 0.00 32.87 2.69
5089 6457 5.765677 TGTCCGGAAATACTTGTCATCAAAA 59.234 36.000 5.23 0.00 32.87 2.44
5090 6458 6.432783 TGTCCGGAAATACTTGTCATCAAAAT 59.567 34.615 5.23 0.00 32.87 1.82
5091 6459 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
5092 6460 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
5093 6461 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
5094 6462 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
5102 6470 9.918630 ACTTGTCATCAAAATGAATAAAAGGAG 57.081 29.630 0.00 0.00 43.42 3.69
5116 6484 9.132923 TGAATAAAAGGAGATGTATCTAGACGT 57.867 33.333 0.00 0.00 37.25 4.34
5124 6492 9.796180 AGGAGATGTATCTAGACGTATTTTAGT 57.204 33.333 0.00 0.00 37.25 2.24
5138 6506 9.623350 GACGTATTTTAGTTCTAGATACATCCC 57.377 37.037 0.00 0.00 0.00 3.85
5139 6507 9.364653 ACGTATTTTAGTTCTAGATACATCCCT 57.635 33.333 0.00 0.00 0.00 4.20
5148 6516 9.225682 AGTTCTAGATACATCCCTTTTTATCCA 57.774 33.333 0.00 0.00 0.00 3.41
5154 6522 9.713684 AGATACATCCCTTTTTATCCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
5157 6525 8.378115 ACATCCCTTTTTATCCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
5158 6526 8.260114 ACATCCCTTTTTATCCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
5159 6527 7.789202 TCCCTTTTTATCCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
5160 6528 8.200024 TCCCTTTTTATCCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
5161 6529 8.313292 TCCCTTTTTATCCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
5162 6530 8.096414 CCCTTTTTATCCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
5169 6537 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
5170 6538 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
5171 6539 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
5172 6540 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
5173 6541 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
5174 6542 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
5175 6543 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
5176 6544 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
5177 6545 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5178 6546 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5179 6547 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
5180 6548 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
5181 6549 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
5182 6550 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
5183 6551 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
5184 6552 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
5185 6553 0.393537 TTCGGACGGAGGGAGTACTC 60.394 60.000 14.87 14.87 36.76 2.59
5186 6554 1.224039 CGGACGGAGGGAGTACTCT 59.776 63.158 21.88 3.41 37.63 3.24
5187 6555 0.467384 CGGACGGAGGGAGTACTCTA 59.533 60.000 21.88 0.00 37.63 2.43
5188 6556 1.134280 CGGACGGAGGGAGTACTCTAA 60.134 57.143 21.88 0.00 37.63 2.10
5199 6567 5.183522 AGGGAGTACTCTAAAAGAAGTGTCG 59.816 44.000 21.88 0.00 0.00 4.35
5260 6632 4.340617 TGTTCAACCCCATGAATAACTCC 58.659 43.478 0.00 0.00 41.09 3.85
5339 6789 9.036671 GGTTGAGATTTCTCTAACTATAACAGC 57.963 37.037 8.91 0.00 43.25 4.40
5439 6911 9.719355 TGTTGACAAATATTTAGACTTCTAGCA 57.281 29.630 0.00 0.00 0.00 3.49
5515 7021 1.904144 TTCAGCGATTTACGAGACCG 58.096 50.000 0.00 0.00 45.77 4.79
5517 7023 1.226888 AGCGATTTACGAGACCGCC 60.227 57.895 0.00 0.00 46.09 6.13
5521 7027 1.129326 GATTTACGAGACCGCCGATG 58.871 55.000 0.00 0.00 39.95 3.84
5600 7106 2.022764 AACGCATCGGTTCATGATGA 57.977 45.000 7.12 0.00 44.76 2.92
5702 7211 3.699067 TCTTACGCCTTATACGAACTGC 58.301 45.455 0.00 0.00 0.00 4.40
5703 7212 2.109609 TACGCCTTATACGAACTGCG 57.890 50.000 0.00 0.00 46.69 5.18
5704 7213 0.452987 ACGCCTTATACGAACTGCGA 59.547 50.000 8.79 0.00 44.32 5.10
5707 7216 2.739292 GCCTTATACGAACTGCGATGA 58.261 47.619 0.00 0.00 44.57 2.92
5708 7217 2.471743 GCCTTATACGAACTGCGATGAC 59.528 50.000 0.00 0.00 44.57 3.06
5710 7219 4.360563 CCTTATACGAACTGCGATGACTT 58.639 43.478 0.00 0.00 44.57 3.01
5713 7222 4.895224 ATACGAACTGCGATGACTTCTA 57.105 40.909 0.00 0.00 44.57 2.10
5885 7401 7.201145 TGCTAAAACTATATCTCGACAAGGTC 58.799 38.462 0.00 0.00 0.00 3.85
5934 7451 2.030371 TGCATTTTGTTGCCTGTCTCA 58.970 42.857 0.00 0.00 42.06 3.27
6027 7544 2.281484 GACACCCTCAAAGCGGCA 60.281 61.111 1.45 0.00 0.00 5.69
6117 7634 3.849911 TCTCTACCATTTCAACTGAGCG 58.150 45.455 0.00 0.00 0.00 5.03
6248 7766 6.292703 GCCAGCAAACGTCGAAATAATAGTAT 60.293 38.462 0.00 0.00 0.00 2.12
6249 7767 7.095940 GCCAGCAAACGTCGAAATAATAGTATA 60.096 37.037 0.00 0.00 0.00 1.47
6250 7768 8.212495 CCAGCAAACGTCGAAATAATAGTATAC 58.788 37.037 0.00 0.00 0.00 1.47
6251 7769 8.965172 CAGCAAACGTCGAAATAATAGTATACT 58.035 33.333 10.87 10.87 0.00 2.12
6275 7797 9.080097 ACTAGTATATAATCCTTGTGTGAGACC 57.920 37.037 0.00 0.00 0.00 3.85
6297 7819 4.276678 CCGGATATGTTTGTGATGAGCAAT 59.723 41.667 0.00 0.00 0.00 3.56
6303 7825 6.872628 ATGTTTGTGATGAGCAATCGATAT 57.127 33.333 0.00 0.00 38.22 1.63
6308 7830 5.714047 TGTGATGAGCAATCGATATACTCC 58.286 41.667 15.63 5.97 38.22 3.85
6431 8264 5.686753 ACAACCTTACTGAATGTACAACCA 58.313 37.500 0.00 0.00 0.00 3.67
6432 8265 6.123651 ACAACCTTACTGAATGTACAACCAA 58.876 36.000 0.00 0.00 0.00 3.67
6473 8306 2.610859 GGCCAACCCTCCCTCTCA 60.611 66.667 0.00 0.00 0.00 3.27
6486 8319 2.034532 TCTCACGTCGCACCCCTA 59.965 61.111 0.00 0.00 0.00 3.53
6544 8385 2.283809 CCCGACTCATCCCCTCCT 59.716 66.667 0.00 0.00 0.00 3.69
6547 8388 1.403687 CCGACTCATCCCCTCCTTCC 61.404 65.000 0.00 0.00 0.00 3.46
6550 8391 1.319799 CTCATCCCCTCCTTCCCCT 59.680 63.158 0.00 0.00 0.00 4.79
6553 8394 2.272170 ATCCCCTCCTTCCCCTCCA 61.272 63.158 0.00 0.00 0.00 3.86
6554 8395 1.627017 ATCCCCTCCTTCCCCTCCAT 61.627 60.000 0.00 0.00 0.00 3.41
6555 8396 1.772156 CCCCTCCTTCCCCTCCATC 60.772 68.421 0.00 0.00 0.00 3.51
6556 8397 2.143419 CCCTCCTTCCCCTCCATCG 61.143 68.421 0.00 0.00 0.00 3.84
6557 8398 2.812619 CCTCCTTCCCCTCCATCGC 61.813 68.421 0.00 0.00 0.00 4.58
6558 8399 2.768344 TCCTTCCCCTCCATCGCC 60.768 66.667 0.00 0.00 0.00 5.54
6559 8400 4.241555 CCTTCCCCTCCATCGCCG 62.242 72.222 0.00 0.00 0.00 6.46
6560 8401 4.918201 CTTCCCCTCCATCGCCGC 62.918 72.222 0.00 0.00 0.00 6.53
6597 8438 0.036765 TAAAGCCCGTGCGATTGACT 60.037 50.000 0.00 0.00 44.33 3.41
6762 9069 2.304056 CCAGAGGATGGCAGTGGGT 61.304 63.158 0.00 0.00 43.83 4.51
6769 9076 1.228862 ATGGCAGTGGGTTTGGGTC 60.229 57.895 0.00 0.00 0.00 4.46
6845 9152 2.281484 GCGGTGGGTGAAGCTCAA 60.281 61.111 0.00 0.00 0.00 3.02
7071 9390 4.100084 CTGGGGTGGCGATGCTGA 62.100 66.667 0.00 0.00 0.00 4.26
7101 9420 3.727258 CCGGATCTGGGTGGCCAA 61.727 66.667 7.24 0.00 0.00 4.52
7104 9423 0.684153 CGGATCTGGGTGGCCAAATT 60.684 55.000 7.24 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.355363 TGGTTCGGAACAGCGACG 60.355 61.111 21.36 0.00 0.00 5.12
22 23 2.678934 TCGTCCCTCCTGGTTCGG 60.679 66.667 0.00 0.00 34.90 4.30
106 108 0.814010 GAGGACGCAACAGTTGGTGT 60.814 55.000 15.28 8.29 43.24 4.16
126 128 2.125512 ACGTCGCCTCTTCATGGC 60.126 61.111 0.00 0.00 46.42 4.40
143 145 3.028130 CGATACGCTAGTGGCCGA 58.972 61.111 8.42 0.00 37.74 5.54
162 164 4.178214 ATTGCAACATCGGCGGCG 62.178 61.111 27.15 27.15 0.00 6.46
168 170 1.400246 CGTGCTGCATTGCAACATCG 61.400 55.000 16.99 16.70 45.12 3.84
170 172 0.314618 TTCGTGCTGCATTGCAACAT 59.685 45.000 16.99 0.00 45.12 2.71
172 174 0.594540 TGTTCGTGCTGCATTGCAAC 60.595 50.000 13.18 9.02 45.12 4.17
211 213 3.188786 GCATCGCAGACCGGTCAC 61.189 66.667 35.00 24.78 42.51 3.67
216 218 2.476051 GTGTTGCATCGCAGACCG 59.524 61.111 3.45 0.00 42.51 4.79
307 309 3.988525 GGCATTGCGGCACCAACA 61.989 61.111 0.05 0.00 40.76 3.33
331 333 0.907230 GAGCAACCCAGTCTCCTCCT 60.907 60.000 0.00 0.00 0.00 3.69
332 334 1.599576 GAGCAACCCAGTCTCCTCC 59.400 63.158 0.00 0.00 0.00 4.30
333 335 1.216710 CGAGCAACCCAGTCTCCTC 59.783 63.158 0.00 0.00 0.00 3.71
339 341 4.681978 GACGGCGAGCAACCCAGT 62.682 66.667 16.62 0.00 0.00 4.00
353 355 1.299541 AAGCTCCAACACAACAGACG 58.700 50.000 0.00 0.00 0.00 4.18
356 358 3.119531 TGACAAAAGCTCCAACACAACAG 60.120 43.478 0.00 0.00 0.00 3.16
361 363 2.863704 GCCATGACAAAAGCTCCAACAC 60.864 50.000 0.00 0.00 0.00 3.32
362 364 1.340889 GCCATGACAAAAGCTCCAACA 59.659 47.619 0.00 0.00 0.00 3.33
432 1588 2.738521 CCCGTCACAGCTTCCACG 60.739 66.667 1.84 1.84 0.00 4.94
668 1832 6.075315 TCCTCTGATTATTCTCAACCGGATA 58.925 40.000 9.46 0.00 0.00 2.59
785 1968 7.777440 TGCCCATTGATTTATACTATTGACACA 59.223 33.333 0.00 0.00 0.00 3.72
786 1969 8.165239 TGCCCATTGATTTATACTATTGACAC 57.835 34.615 0.00 0.00 0.00 3.67
787 1970 7.998383 ACTGCCCATTGATTTATACTATTGACA 59.002 33.333 0.00 0.00 0.00 3.58
880 2063 3.635591 CTGCCCCCTGATTTTTCTATGT 58.364 45.455 0.00 0.00 0.00 2.29
883 2066 1.341976 GGCTGCCCCCTGATTTTTCTA 60.342 52.381 7.66 0.00 0.00 2.10
1008 2191 6.351711 GGAAGATATGATATGAGAGTGTGGGG 60.352 46.154 0.00 0.00 0.00 4.96
1036 2219 1.124780 TGGTCCGGTGAAGAAAGACA 58.875 50.000 0.00 0.00 0.00 3.41
1069 2252 2.682256 CTTGCTGGTTGGTGGCGTTG 62.682 60.000 0.00 0.00 0.00 4.10
1070 2253 2.441164 TTGCTGGTTGGTGGCGTT 60.441 55.556 0.00 0.00 0.00 4.84
1073 2256 1.036707 TTTACTTGCTGGTTGGTGGC 58.963 50.000 0.00 0.00 0.00 5.01
1122 2311 0.820871 AGTCTGCGTTCATCCCTCTC 59.179 55.000 0.00 0.00 0.00 3.20
1137 2330 3.885521 GTAGGCGCGCCGTAGTCT 61.886 66.667 41.70 27.09 41.95 3.24
1215 2408 1.030488 GGTCGACGATCACCTGGAGA 61.030 60.000 9.92 0.00 0.00 3.71
1231 2424 4.603946 GATACGGGCGGGCTGGTC 62.604 72.222 15.37 8.59 0.00 4.02
1266 2473 7.041508 GCATCATTAATCCAAGAACGAGAGAAT 60.042 37.037 0.00 0.00 0.00 2.40
1286 2493 6.092955 ACAGACAACAAATTTCAGCATCAT 57.907 33.333 0.00 0.00 0.00 2.45
1425 2638 4.771356 TCGTCCGGCGCGAGAAAG 62.771 66.667 12.10 0.99 41.07 2.62
1499 2712 0.387929 CAAACGATCCGGGCTAGCTA 59.612 55.000 15.72 0.00 0.00 3.32
1550 2763 0.379669 GCACCACTGTATGCATCAGC 59.620 55.000 19.66 7.28 41.65 4.26
1566 2779 0.037975 CCACCCTGCAAAATCAGCAC 60.038 55.000 0.00 0.00 37.02 4.40
1671 2884 9.976511 TTACCAATAAATCCGTAGAGAATACTG 57.023 33.333 0.00 0.00 0.00 2.74
1989 3262 0.179181 GACGGTAGATGAACGCACGA 60.179 55.000 0.00 0.00 0.00 4.35
1990 3263 1.461317 CGACGGTAGATGAACGCACG 61.461 60.000 0.00 0.00 0.00 5.34
1994 3267 3.335786 AGAATCGACGGTAGATGAACG 57.664 47.619 4.47 0.00 0.00 3.95
2053 3326 2.629617 CTGGGAAAACAGAGGTGCAATT 59.370 45.455 0.00 0.00 40.97 2.32
2054 3327 2.242043 CTGGGAAAACAGAGGTGCAAT 58.758 47.619 0.00 0.00 40.97 3.56
2145 3418 6.061022 TCCAAGTTAAGATTCTGGCATGTA 57.939 37.500 0.00 0.00 0.00 2.29
2148 3421 4.891756 CCATCCAAGTTAAGATTCTGGCAT 59.108 41.667 0.00 0.00 0.00 4.40
2154 3427 3.633986 CCAGGCCATCCAAGTTAAGATTC 59.366 47.826 5.01 0.00 33.74 2.52
2155 3428 3.011708 ACCAGGCCATCCAAGTTAAGATT 59.988 43.478 5.01 0.00 33.74 2.40
2196 3469 5.490159 ACCAATTTTATCGGGTTCTCGTAA 58.510 37.500 0.00 0.00 0.00 3.18
2202 3475 7.090953 TGTCATAACCAATTTTATCGGGTTC 57.909 36.000 0.00 0.00 42.37 3.62
2270 3545 6.376299 AGAACTCAAAATAGCTCATGCATCAA 59.624 34.615 0.00 0.00 42.74 2.57
2323 3600 8.761689 ACACCAATTATGCTTGAAAATATCCTT 58.238 29.630 0.00 0.00 0.00 3.36
2325 3602 9.683069 CTACACCAATTATGCTTGAAAATATCC 57.317 33.333 0.00 0.00 0.00 2.59
2331 3608 5.973899 TGCTACACCAATTATGCTTGAAA 57.026 34.783 0.00 0.00 0.00 2.69
2379 3658 5.395682 ACCACGTACATGCTTCTACTAAA 57.604 39.130 0.00 0.00 0.00 1.85
2420 3699 3.699038 AGTCACTCCTGATAACAGAGAGC 59.301 47.826 14.31 3.92 46.03 4.09
2469 3748 2.885266 GTTCTTTTGGACAAGGGTCTCC 59.115 50.000 0.00 0.00 43.77 3.71
2513 3792 7.259290 AGCATTTGGTATTACGGATTAAGTG 57.741 36.000 0.00 0.00 0.00 3.16
2515 3794 6.202188 ACGAGCATTTGGTATTACGGATTAAG 59.798 38.462 0.00 0.00 0.00 1.85
2522 3801 6.764877 AGAATACGAGCATTTGGTATTACG 57.235 37.500 0.00 0.00 37.08 3.18
2529 3808 4.201950 CCCTTGAAGAATACGAGCATTTGG 60.202 45.833 0.00 0.00 0.00 3.28
2559 3838 7.979786 AAAGACATTAGTCCCTGAGAGATTA 57.020 36.000 0.00 0.00 46.15 1.75
2586 3865 0.248458 GCACACCAACAACCTGTTCG 60.248 55.000 0.00 0.00 38.77 3.95
2595 3874 0.814457 GTGAAACAGGCACACCAACA 59.186 50.000 0.00 0.00 39.06 3.33
2643 3922 2.500229 TCAAATCCAACGGTTGTCTCC 58.500 47.619 18.73 0.00 0.00 3.71
2709 3988 0.391661 ATGCGCAGGTCATTTCGTCT 60.392 50.000 18.32 0.00 0.00 4.18
3049 4330 3.899980 TCATGCATAGTAGTCTGGCTGAT 59.100 43.478 0.00 0.00 0.00 2.90
3228 4512 1.039856 ATCTTGCAAACAAACCGGCT 58.960 45.000 0.00 0.00 34.74 5.52
3243 4527 5.065914 TGAGCAAAGTGTTCAGCTAATCTT 58.934 37.500 0.00 0.00 37.48 2.40
3318 4628 1.070758 CCTGAACATGGATACCGGGAG 59.929 57.143 6.32 0.00 0.00 4.30
3440 4750 7.170828 GTGGAACCAAAGTTATGTTTTTCATCC 59.829 37.037 0.00 0.00 35.94 3.51
3477 4787 3.593442 TTCCTGGAATGGTTGAACAGT 57.407 42.857 4.68 0.00 0.00 3.55
3549 4859 4.314440 TGCTGCCCACGGAGACAC 62.314 66.667 0.00 0.00 0.00 3.67
3679 4990 5.098211 GGAGCTGAGTGAAAAATGTAATGC 58.902 41.667 0.00 0.00 0.00 3.56
3684 4995 3.073650 AGGAGGAGCTGAGTGAAAAATGT 59.926 43.478 0.00 0.00 0.00 2.71
3731 5042 1.562008 TCACAAACCTGGGACAACTGA 59.438 47.619 0.00 0.00 38.70 3.41
3757 5068 4.622701 AATTTCGGCAACTAAGAGCATC 57.377 40.909 0.00 0.00 0.00 3.91
3772 5083 7.741198 ACCAACAATTGCATGATAAAATTTCG 58.259 30.769 5.05 0.00 0.00 3.46
3776 5088 7.546667 GTGAGACCAACAATTGCATGATAAAAT 59.453 33.333 5.05 0.00 0.00 1.82
3791 5103 2.613026 ACGACAATGTGAGACCAACA 57.387 45.000 0.00 0.00 0.00 3.33
3798 5110 6.792250 GTCAATCTGTAAAACGACAATGTGAG 59.208 38.462 0.00 0.00 0.00 3.51
3810 5122 5.822519 AGTTGCTCAGTGTCAATCTGTAAAA 59.177 36.000 4.43 0.00 34.86 1.52
3829 5142 2.222027 ACCAAGTGAGCTAACAGTTGC 58.778 47.619 14.60 0.00 44.77 4.17
3868 5181 3.471680 AGCCTGAAAACTCACTGTTCTC 58.528 45.455 0.00 0.00 38.03 2.87
3924 5239 2.022195 CAACATGATCAGAAGGGGCTG 58.978 52.381 0.00 0.00 37.24 4.85
3927 5242 2.431954 AGCAACATGATCAGAAGGGG 57.568 50.000 0.00 0.00 0.00 4.79
4055 5370 3.840890 TTTGCAACCCTTACATAAGCG 57.159 42.857 0.00 0.00 32.02 4.68
4140 5456 8.388656 TGGTTCAAATATTAGAGTAGGTCCTT 57.611 34.615 0.00 0.00 0.00 3.36
4141 5457 7.071321 CCTGGTTCAAATATTAGAGTAGGTCCT 59.929 40.741 0.00 0.00 0.00 3.85
4142 5458 7.147532 ACCTGGTTCAAATATTAGAGTAGGTCC 60.148 40.741 0.00 0.00 0.00 4.46
4143 5459 7.793036 ACCTGGTTCAAATATTAGAGTAGGTC 58.207 38.462 0.00 0.00 0.00 3.85
4145 5461 8.487028 AGAACCTGGTTCAAATATTAGAGTAGG 58.513 37.037 34.19 0.00 44.11 3.18
4146 5462 9.892130 AAGAACCTGGTTCAAATATTAGAGTAG 57.108 33.333 34.19 0.00 44.11 2.57
4248 5568 1.086696 GCACATCGCCACTTGTGTAT 58.913 50.000 5.11 0.00 44.01 2.29
4364 5685 5.371526 ACCATTTAGTGCAGAGGATACATG 58.628 41.667 0.00 0.00 41.41 3.21
4365 5686 5.636903 ACCATTTAGTGCAGAGGATACAT 57.363 39.130 0.00 0.00 41.41 2.29
4366 5687 6.464322 CCATACCATTTAGTGCAGAGGATACA 60.464 42.308 0.00 0.00 41.41 2.29
4367 5688 5.934625 CCATACCATTTAGTGCAGAGGATAC 59.065 44.000 0.00 0.00 0.00 2.24
4408 5769 5.855740 TTTACTTAACCACAAAAGGGGTG 57.144 39.130 0.00 0.00 37.50 4.61
4549 5910 7.783042 ACAGAACAAGTTTTACAGAGTAGTCT 58.217 34.615 0.00 0.00 0.00 3.24
4557 5918 9.221775 GACAATACAACAGAACAAGTTTTACAG 57.778 33.333 0.00 0.00 0.00 2.74
4657 6024 2.355412 CCTGACACTCATCATTGCCTGA 60.355 50.000 0.00 0.00 38.53 3.86
4872 6239 7.269297 TGCAAAAACGATTTAAACTGCAAAAAC 59.731 29.630 11.38 0.00 36.26 2.43
4935 6303 4.019858 TCTTCTGTGATACTCCCTCTGTG 58.980 47.826 0.00 0.00 0.00 3.66
4936 6304 4.020543 GTCTTCTGTGATACTCCCTCTGT 58.979 47.826 0.00 0.00 0.00 3.41
4937 6305 4.019858 TGTCTTCTGTGATACTCCCTCTG 58.980 47.826 0.00 0.00 0.00 3.35
4938 6306 4.020543 GTGTCTTCTGTGATACTCCCTCT 58.979 47.826 0.00 0.00 0.00 3.69
4939 6307 4.020543 AGTGTCTTCTGTGATACTCCCTC 58.979 47.826 0.00 0.00 34.09 4.30
4940 6308 4.054359 AGTGTCTTCTGTGATACTCCCT 57.946 45.455 0.00 0.00 34.09 4.20
4941 6309 4.810191 AAGTGTCTTCTGTGATACTCCC 57.190 45.455 0.00 0.00 37.41 4.30
4962 6330 7.899648 TTAATTAGGGTTGGACACTGAAAAA 57.100 32.000 0.00 0.00 31.80 1.94
4963 6331 8.485578 AATTAATTAGGGTTGGACACTGAAAA 57.514 30.769 0.00 0.00 31.80 2.29
4964 6332 7.726291 TGAATTAATTAGGGTTGGACACTGAAA 59.274 33.333 0.00 0.00 31.80 2.69
4965 6333 7.235079 TGAATTAATTAGGGTTGGACACTGAA 58.765 34.615 0.00 0.00 31.80 3.02
4966 6334 6.785076 TGAATTAATTAGGGTTGGACACTGA 58.215 36.000 0.00 0.00 31.80 3.41
4967 6335 7.645058 ATGAATTAATTAGGGTTGGACACTG 57.355 36.000 0.00 0.00 31.80 3.66
4968 6336 7.778382 GGTATGAATTAATTAGGGTTGGACACT 59.222 37.037 0.00 0.00 35.11 3.55
4969 6337 7.558444 TGGTATGAATTAATTAGGGTTGGACAC 59.442 37.037 0.00 0.00 0.00 3.67
4970 6338 7.644062 TGGTATGAATTAATTAGGGTTGGACA 58.356 34.615 0.00 0.00 0.00 4.02
4971 6339 7.996644 TCTGGTATGAATTAATTAGGGTTGGAC 59.003 37.037 0.00 0.00 0.00 4.02
4972 6340 7.996644 GTCTGGTATGAATTAATTAGGGTTGGA 59.003 37.037 0.00 0.00 0.00 3.53
4973 6341 7.777910 TGTCTGGTATGAATTAATTAGGGTTGG 59.222 37.037 0.00 0.00 0.00 3.77
4974 6342 8.746052 TGTCTGGTATGAATTAATTAGGGTTG 57.254 34.615 0.00 0.00 0.00 3.77
4975 6343 9.936329 AATGTCTGGTATGAATTAATTAGGGTT 57.064 29.630 0.00 0.00 0.00 4.11
4976 6344 9.574516 GAATGTCTGGTATGAATTAATTAGGGT 57.425 33.333 0.00 0.00 0.00 4.34
4977 6345 9.799106 AGAATGTCTGGTATGAATTAATTAGGG 57.201 33.333 0.00 0.00 0.00 3.53
4985 6353 9.696917 GTTTTGAAAGAATGTCTGGTATGAATT 57.303 29.630 0.00 0.00 0.00 2.17
4986 6354 9.082313 AGTTTTGAAAGAATGTCTGGTATGAAT 57.918 29.630 0.00 0.00 0.00 2.57
4987 6355 8.463930 AGTTTTGAAAGAATGTCTGGTATGAA 57.536 30.769 0.00 0.00 0.00 2.57
4988 6356 9.567776 TTAGTTTTGAAAGAATGTCTGGTATGA 57.432 29.630 0.00 0.00 0.00 2.15
4991 6359 9.621629 TCTTTAGTTTTGAAAGAATGTCTGGTA 57.378 29.630 0.00 0.00 39.40 3.25
4992 6360 8.519799 TCTTTAGTTTTGAAAGAATGTCTGGT 57.480 30.769 0.00 0.00 39.40 4.00
4993 6361 7.592903 GCTCTTTAGTTTTGAAAGAATGTCTGG 59.407 37.037 0.06 0.00 41.24 3.86
4994 6362 7.322222 CGCTCTTTAGTTTTGAAAGAATGTCTG 59.678 37.037 0.06 0.00 41.24 3.51
4995 6363 7.355778 CGCTCTTTAGTTTTGAAAGAATGTCT 58.644 34.615 0.06 0.00 41.24 3.41
4996 6364 6.578919 CCGCTCTTTAGTTTTGAAAGAATGTC 59.421 38.462 0.06 0.00 41.24 3.06
4997 6365 6.438763 CCGCTCTTTAGTTTTGAAAGAATGT 58.561 36.000 0.06 0.00 41.24 2.71
4998 6366 5.858581 CCCGCTCTTTAGTTTTGAAAGAATG 59.141 40.000 0.06 0.00 41.24 2.67
4999 6367 5.768164 TCCCGCTCTTTAGTTTTGAAAGAAT 59.232 36.000 0.06 0.00 41.24 2.40
5000 6368 5.127491 TCCCGCTCTTTAGTTTTGAAAGAA 58.873 37.500 0.06 0.00 41.24 2.52
5059 6427 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
5061 6429 3.056107 TGACAAGTATTTCCGGACAGAGG 60.056 47.826 1.83 0.00 0.00 3.69
5062 6430 4.188247 TGACAAGTATTTCCGGACAGAG 57.812 45.455 1.83 0.00 0.00 3.35
5063 6431 4.221924 TGATGACAAGTATTTCCGGACAGA 59.778 41.667 1.83 0.00 0.00 3.41
5064 6432 4.503910 TGATGACAAGTATTTCCGGACAG 58.496 43.478 1.83 0.00 0.00 3.51
5065 6433 4.545208 TGATGACAAGTATTTCCGGACA 57.455 40.909 1.83 0.00 0.00 4.02
5066 6434 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
5068 6436 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
5069 6437 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
5076 6444 9.918630 CTCCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
5090 6458 9.132923 ACGTCTAGATACATCTCCTTTTATTCA 57.867 33.333 0.00 0.00 38.32 2.57
5098 6466 9.796180 ACTAAAATACGTCTAGATACATCTCCT 57.204 33.333 0.00 0.00 38.32 3.69
5112 6480 9.623350 GGGATGTATCTAGAACTAAAATACGTC 57.377 37.037 17.13 17.13 37.78 4.34
5113 6481 9.364653 AGGGATGTATCTAGAACTAAAATACGT 57.635 33.333 0.00 0.00 0.00 3.57
5122 6490 9.225682 TGGATAAAAAGGGATGTATCTAGAACT 57.774 33.333 0.00 0.00 0.00 3.01
5128 6496 9.713684 TCAAAATGGATAAAAAGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
5131 6499 9.486123 TCATCAAAATGGATAAAAAGGGATGTA 57.514 29.630 0.00 0.00 33.42 2.29
5132 6500 8.260114 GTCATCAAAATGGATAAAAAGGGATGT 58.740 33.333 0.00 0.00 33.42 3.06
5133 6501 8.259411 TGTCATCAAAATGGATAAAAAGGGATG 58.741 33.333 0.00 0.00 33.42 3.51
5134 6502 8.378115 TGTCATCAAAATGGATAAAAAGGGAT 57.622 30.769 0.00 0.00 33.42 3.85
5135 6503 7.789202 TGTCATCAAAATGGATAAAAAGGGA 57.211 32.000 0.00 0.00 33.42 4.20
5136 6504 8.096414 ACTTGTCATCAAAATGGATAAAAAGGG 58.904 33.333 0.00 0.00 33.42 3.95
5144 6512 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
5145 6513 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
5146 6514 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
5147 6515 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
5148 6516 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
5149 6517 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
5150 6518 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
5151 6519 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
5152 6520 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
5153 6521 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
5154 6522 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
5155 6523 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
5156 6524 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5157 6525 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5158 6526 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5159 6527 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
5160 6528 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
5161 6529 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
5162 6530 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5163 6531 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
5164 6532 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
5165 6533 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
5166 6534 0.393537 GAGTACTCCCTCCGTCCGAA 60.394 60.000 12.13 0.00 0.00 4.30
5167 6535 1.222936 GAGTACTCCCTCCGTCCGA 59.777 63.158 12.13 0.00 0.00 4.55
5168 6536 0.467384 TAGAGTACTCCCTCCGTCCG 59.533 60.000 19.38 0.00 31.53 4.79
5169 6537 2.725221 TTAGAGTACTCCCTCCGTCC 57.275 55.000 19.38 0.00 31.53 4.79
5170 6538 4.268359 TCTTTTAGAGTACTCCCTCCGTC 58.732 47.826 19.38 0.00 31.53 4.79
5171 6539 4.313020 TCTTTTAGAGTACTCCCTCCGT 57.687 45.455 19.38 2.25 31.53 4.69
5172 6540 4.705991 ACTTCTTTTAGAGTACTCCCTCCG 59.294 45.833 19.38 6.06 31.53 4.63
5173 6541 5.481122 ACACTTCTTTTAGAGTACTCCCTCC 59.519 44.000 19.38 0.00 31.53 4.30
5174 6542 6.593268 ACACTTCTTTTAGAGTACTCCCTC 57.407 41.667 19.38 0.00 0.00 4.30
5175 6543 5.183522 CGACACTTCTTTTAGAGTACTCCCT 59.816 44.000 19.38 4.54 0.00 4.20
5176 6544 5.048154 ACGACACTTCTTTTAGAGTACTCCC 60.048 44.000 19.38 0.00 0.00 4.30
5177 6545 6.011476 ACGACACTTCTTTTAGAGTACTCC 57.989 41.667 19.38 1.81 0.00 3.85
5178 6546 6.901265 AGACGACACTTCTTTTAGAGTACTC 58.099 40.000 15.41 15.41 0.00 2.59
5179 6547 6.880942 AGACGACACTTCTTTTAGAGTACT 57.119 37.500 0.00 0.00 0.00 2.73
5180 6548 7.137426 TGAAGACGACACTTCTTTTAGAGTAC 58.863 38.462 16.98 0.00 44.34 2.73
5181 6549 7.268199 TGAAGACGACACTTCTTTTAGAGTA 57.732 36.000 16.98 0.00 44.34 2.59
5182 6550 6.145338 TGAAGACGACACTTCTTTTAGAGT 57.855 37.500 16.98 0.00 44.34 3.24
5183 6551 7.644986 AATGAAGACGACACTTCTTTTAGAG 57.355 36.000 16.98 0.00 44.34 2.43
5184 6552 8.358148 AGTAATGAAGACGACACTTCTTTTAGA 58.642 33.333 18.51 7.25 44.34 2.10
5185 6553 8.428536 CAGTAATGAAGACGACACTTCTTTTAG 58.571 37.037 18.51 10.98 44.34 1.85
5186 6554 7.924412 ACAGTAATGAAGACGACACTTCTTTTA 59.076 33.333 18.51 14.14 44.34 1.52
5187 6555 6.761714 ACAGTAATGAAGACGACACTTCTTTT 59.238 34.615 18.51 14.73 44.34 2.27
5188 6556 6.281405 ACAGTAATGAAGACGACACTTCTTT 58.719 36.000 16.98 17.48 44.34 2.52
5237 6609 4.956075 GGAGTTATTCATGGGGTTGAACAT 59.044 41.667 0.00 0.00 38.37 2.71
5515 7021 4.584394 CCTTCGTGTTTTATTACATCGGC 58.416 43.478 0.00 0.00 0.00 5.54
5517 7023 5.464965 AGCCTTCGTGTTTTATTACATCG 57.535 39.130 0.00 0.00 0.00 3.84
5521 7027 6.913873 TCCATAGCCTTCGTGTTTTATTAC 57.086 37.500 0.00 0.00 0.00 1.89
5702 7211 2.926200 CAGCAACCTGTAGAAGTCATCG 59.074 50.000 0.00 0.00 34.31 3.84
5703 7212 2.675348 GCAGCAACCTGTAGAAGTCATC 59.325 50.000 0.00 0.00 41.26 2.92
5704 7213 2.704572 GCAGCAACCTGTAGAAGTCAT 58.295 47.619 0.00 0.00 41.26 3.06
5707 7216 0.679505 TCGCAGCAACCTGTAGAAGT 59.320 50.000 0.00 0.00 41.26 3.01
5708 7217 1.067565 TCTCGCAGCAACCTGTAGAAG 60.068 52.381 0.00 0.00 41.26 2.85
5710 7219 0.528017 CTCTCGCAGCAACCTGTAGA 59.472 55.000 0.00 0.00 41.26 2.59
5713 7222 0.106708 TTTCTCTCGCAGCAACCTGT 59.893 50.000 0.00 0.00 41.26 4.00
5780 7296 3.891366 CTGAACCAGGTCCTTCAAATTGT 59.109 43.478 0.00 0.00 0.00 2.71
5885 7401 0.804989 GAGATTGGTTTCAGGCACCG 59.195 55.000 0.00 0.00 37.07 4.94
5886 7402 0.804989 CGAGATTGGTTTCAGGCACC 59.195 55.000 0.00 0.00 34.52 5.01
5934 7451 2.162681 GCTTGGCACAGTTAGGAACAT 58.837 47.619 0.00 0.00 42.39 2.71
6027 7544 5.068329 TGTCACTGAGATCATCGAGCTTATT 59.932 40.000 0.00 0.00 0.00 1.40
6249 7767 9.080097 GGTCTCACACAAGGATTATATACTAGT 57.920 37.037 0.00 0.00 0.00 2.57
6250 7768 8.237949 CGGTCTCACACAAGGATTATATACTAG 58.762 40.741 0.00 0.00 0.00 2.57
6251 7769 7.176165 CCGGTCTCACACAAGGATTATATACTA 59.824 40.741 0.00 0.00 0.00 1.82
6252 7770 6.015350 CCGGTCTCACACAAGGATTATATACT 60.015 42.308 0.00 0.00 0.00 2.12
6253 7771 6.015688 TCCGGTCTCACACAAGGATTATATAC 60.016 42.308 0.00 0.00 30.77 1.47
6254 7772 6.072649 TCCGGTCTCACACAAGGATTATATA 58.927 40.000 0.00 0.00 30.77 0.86
6255 7773 4.899457 TCCGGTCTCACACAAGGATTATAT 59.101 41.667 0.00 0.00 30.77 0.86
6256 7774 4.283337 TCCGGTCTCACACAAGGATTATA 58.717 43.478 0.00 0.00 30.77 0.98
6275 7797 4.880886 TTGCTCATCACAAACATATCCG 57.119 40.909 0.00 0.00 0.00 4.18
6297 7819 2.860009 ACTTCGGCTGGAGTATATCGA 58.140 47.619 4.04 0.00 0.00 3.59
6303 7825 3.628008 TCTGATTACTTCGGCTGGAGTA 58.372 45.455 9.84 9.84 0.00 2.59
6308 7830 4.849111 GAAGTTCTGATTACTTCGGCTG 57.151 45.455 6.51 0.00 41.28 4.85
6394 7916 7.546667 TCAGTAAGGTTGTAATGTCCGAATTAC 59.453 37.037 8.02 8.02 41.45 1.89
6431 8264 4.637534 CCGGTTGATGAGTTGATGATCTTT 59.362 41.667 0.00 0.00 0.00 2.52
6432 8265 4.080919 TCCGGTTGATGAGTTGATGATCTT 60.081 41.667 0.00 0.00 0.00 2.40
6505 8338 2.907179 GCTGGTGGCTAGGGTTGGT 61.907 63.158 0.00 0.00 38.06 3.67
6535 8368 1.627017 ATGGAGGGGAAGGAGGGGAT 61.627 60.000 0.00 0.00 0.00 3.85
6578 8419 0.036765 AGTCAATCGCACGGGCTTTA 60.037 50.000 8.62 0.00 38.10 1.85
6666 8973 1.377333 CCGAGGAAAAGGCCACTCC 60.377 63.158 5.01 7.68 0.00 3.85
6667 8974 0.673956 GACCGAGGAAAAGGCCACTC 60.674 60.000 5.01 3.38 0.00 3.51
6755 9062 1.903404 GCCAGACCCAAACCCACTG 60.903 63.158 0.00 0.00 0.00 3.66
6756 9063 2.520968 GCCAGACCCAAACCCACT 59.479 61.111 0.00 0.00 0.00 4.00
6824 9131 2.676471 GCTTCACCCACCGCCATT 60.676 61.111 0.00 0.00 0.00 3.16
6825 9132 3.628646 GAGCTTCACCCACCGCCAT 62.629 63.158 0.00 0.00 0.00 4.40
6890 9197 3.457234 CACCAGATCACTAGCGCAATTA 58.543 45.455 11.47 0.00 0.00 1.40
6899 9206 1.985159 AGCCAAACCACCAGATCACTA 59.015 47.619 0.00 0.00 0.00 2.74
7015 9334 1.079819 CTACCAGAGTGCACCACCG 60.080 63.158 14.63 1.31 34.49 4.94
7055 9374 3.410628 ATCAGCATCGCCACCCCA 61.411 61.111 0.00 0.00 0.00 4.96
7057 9376 2.124570 ACATCAGCATCGCCACCC 60.125 61.111 0.00 0.00 0.00 4.61
7064 9383 1.091771 CGACCACCCACATCAGCATC 61.092 60.000 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.