Multiple sequence alignment - TraesCS5D01G082900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G082900 chr5D 100.000 3626 0 0 1 3626 84874712 84878337 0.000000e+00 6697.0
1 TraesCS5D01G082900 chr5A 92.232 2021 123 20 527 2525 79276943 79278951 0.000000e+00 2832.0
2 TraesCS5D01G082900 chr5A 83.226 936 99 23 2709 3619 79279140 79280042 0.000000e+00 806.0
3 TraesCS5D01G082900 chr5A 87.568 185 16 6 2536 2719 79279002 79279180 1.320000e-49 207.0
4 TraesCS5D01G082900 chr5A 95.918 98 4 0 418 515 79269094 79269191 3.750000e-35 159.0
5 TraesCS5D01G082900 chr5A 96.970 33 1 0 2930 2962 358276211 358276179 5.060000e-04 56.5
6 TraesCS5D01G082900 chr5B 89.959 1952 156 19 418 2346 92232370 92230436 0.000000e+00 2483.0
7 TraesCS5D01G082900 chr5B 86.268 568 75 3 3047 3612 50045110 50044544 6.650000e-172 614.0
8 TraesCS5D01G082900 chr5B 85.211 568 82 2 3047 3612 589824141 589823574 1.880000e-162 582.0
9 TraesCS5D01G082900 chr5B 91.111 90 3 5 2625 2711 92230430 92230343 2.290000e-22 117.0
10 TraesCS5D01G082900 chr5B 93.056 72 1 4 2539 2608 695439866 695439797 6.410000e-18 102.0
11 TraesCS5D01G082900 chr1D 88.909 541 56 4 3047 3586 252560517 252561054 0.000000e+00 664.0
12 TraesCS5D01G082900 chr3D 87.544 570 65 5 3047 3612 67624685 67624118 0.000000e+00 654.0
13 TraesCS5D01G082900 chr3D 87.477 535 65 2 3047 3580 114875653 114875120 1.850000e-172 616.0
14 TraesCS5D01G082900 chr3D 90.244 41 3 1 108 147 381192303 381192263 7.000000e-03 52.8
15 TraesCS5D01G082900 chr1B 87.431 541 66 2 3047 3586 360797216 360796677 3.980000e-174 621.0
16 TraesCS5D01G082900 chr3B 86.140 570 74 4 3047 3612 802100539 802099971 8.610000e-171 610.0
17 TraesCS5D01G082900 chr2D 86.404 559 74 1 3050 3606 23450148 23449590 8.610000e-171 610.0
18 TraesCS5D01G082900 chr2D 82.212 416 74 0 3 418 597123668 597124083 3.440000e-95 359.0
19 TraesCS5D01G082900 chr2D 92.000 75 6 0 1 75 50998581 50998655 4.950000e-19 106.0
20 TraesCS5D01G082900 chr2D 87.500 88 6 3 2536 2622 426071620 426071703 2.980000e-16 97.1
21 TraesCS5D01G082900 chr6B 85.263 570 79 4 3047 3612 712550098 712550666 1.880000e-162 582.0
22 TraesCS5D01G082900 chr1A 84.906 265 29 8 2343 2599 485220560 485220821 1.290000e-64 257.0
23 TraesCS5D01G082900 chr1A 85.135 74 8 3 2974 3047 569353801 569353731 5.020000e-09 73.1
24 TraesCS5D01G082900 chr1A 96.970 33 1 0 2930 2962 162951839 162951807 5.060000e-04 56.5
25 TraesCS5D01G082900 chr1A 96.970 33 1 0 2930 2962 165973324 165973292 5.060000e-04 56.5
26 TraesCS5D01G082900 chr6A 84.270 267 29 8 2343 2599 15684401 15684664 7.770000e-62 248.0
27 TraesCS5D01G082900 chr3A 83.077 260 37 6 2343 2599 668688418 668688673 2.820000e-56 230.0
28 TraesCS5D01G082900 chr3A 100.000 30 0 0 2930 2959 659664986 659665015 5.060000e-04 56.5
29 TraesCS5D01G082900 chr4A 87.245 196 22 3 2343 2536 39082179 39082373 1.690000e-53 220.0
30 TraesCS5D01G082900 chr4A 94.872 39 1 1 2926 2963 660197619 660197657 3.910000e-05 60.2
31 TraesCS5D01G082900 chr4A 96.970 33 1 0 2930 2962 289771710 289771678 5.060000e-04 56.5
32 TraesCS5D01G082900 chr2B 86.802 197 22 4 2343 2536 785739058 785739253 2.190000e-52 217.0
33 TraesCS5D01G082900 chr2B 92.593 81 5 1 2539 2618 101069702 101069782 8.230000e-22 115.0
34 TraesCS5D01G082900 chr2B 93.056 72 3 2 2536 2606 708205423 708205493 1.780000e-18 104.0
35 TraesCS5D01G082900 chr2A 86.802 197 22 4 2343 2536 780721050 780720855 2.190000e-52 217.0
36 TraesCS5D01G082900 chr2A 75.532 282 49 13 2343 2606 765582384 765582663 1.770000e-23 121.0
37 TraesCS5D01G082900 chr2A 100.000 30 0 0 2930 2959 242077471 242077500 5.060000e-04 56.5
38 TraesCS5D01G082900 chrUn 86.667 195 25 1 2343 2536 301194783 301194589 7.890000e-52 215.0
39 TraesCS5D01G082900 chrUn 86.667 195 25 1 2343 2536 414085940 414086134 7.890000e-52 215.0
40 TraesCS5D01G082900 chr7B 97.436 39 1 0 2907 2945 8536665 8536703 2.340000e-07 67.6
41 TraesCS5D01G082900 chr7A 96.970 33 1 0 2930 2962 465883371 465883339 5.060000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G082900 chr5D 84874712 84878337 3625 False 6697.000000 6697 100.000000 1 3626 1 chr5D.!!$F1 3625
1 TraesCS5D01G082900 chr5A 79276943 79280042 3099 False 1281.666667 2832 87.675333 527 3619 3 chr5A.!!$F2 3092
2 TraesCS5D01G082900 chr5B 92230343 92232370 2027 True 1300.000000 2483 90.535000 418 2711 2 chr5B.!!$R4 2293
3 TraesCS5D01G082900 chr5B 50044544 50045110 566 True 614.000000 614 86.268000 3047 3612 1 chr5B.!!$R1 565
4 TraesCS5D01G082900 chr5B 589823574 589824141 567 True 582.000000 582 85.211000 3047 3612 1 chr5B.!!$R2 565
5 TraesCS5D01G082900 chr1D 252560517 252561054 537 False 664.000000 664 88.909000 3047 3586 1 chr1D.!!$F1 539
6 TraesCS5D01G082900 chr3D 67624118 67624685 567 True 654.000000 654 87.544000 3047 3612 1 chr3D.!!$R1 565
7 TraesCS5D01G082900 chr3D 114875120 114875653 533 True 616.000000 616 87.477000 3047 3580 1 chr3D.!!$R2 533
8 TraesCS5D01G082900 chr1B 360796677 360797216 539 True 621.000000 621 87.431000 3047 3586 1 chr1B.!!$R1 539
9 TraesCS5D01G082900 chr3B 802099971 802100539 568 True 610.000000 610 86.140000 3047 3612 1 chr3B.!!$R1 565
10 TraesCS5D01G082900 chr2D 23449590 23450148 558 True 610.000000 610 86.404000 3050 3606 1 chr2D.!!$R1 556
11 TraesCS5D01G082900 chr6B 712550098 712550666 568 False 582.000000 582 85.263000 3047 3612 1 chr6B.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.035439 GGAGCCCTTGATTTCCACGA 60.035 55.0 0.00 0.00 0.00 4.35 F
207 208 0.038251 GCATATGCCGATCGGACTGA 60.038 55.0 37.64 18.60 37.50 3.41 F
211 212 0.103208 ATGCCGATCGGACTGAGAAC 59.897 55.0 37.64 17.12 37.50 3.01 F
241 242 0.107459 GCTCCCAGGACCATCTGAAC 60.107 60.0 0.00 0.00 36.93 3.18 F
267 268 0.249398 GGCATGTCCTCCTGTAACGT 59.751 55.0 0.00 0.00 0.00 3.99 F
365 366 0.250209 CCATGCATTCCCCTCGAGAG 60.250 60.0 15.71 0.00 0.00 3.20 F
2233 2253 0.105194 TTGTGTGGGTCTCTCCTGGA 60.105 55.0 0.00 0.00 36.25 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1051 1059 0.586319 GCGTGTAGTTTCTTGCAGCA 59.414 50.000 0.00 0.00 0.00 4.41 R
1052 1060 0.586319 TGCGTGTAGTTTCTTGCAGC 59.414 50.000 0.00 0.00 0.00 5.25 R
2102 2110 1.005156 GATGGCCTCGATGAGCTCC 60.005 63.158 12.15 0.00 0.00 4.70 R
2141 2149 4.700365 CGAGCGACACAGCCGTGA 62.700 66.667 7.16 0.00 46.80 4.35 R
2233 2253 5.816777 CACTCACAATTCACAAAACCCATTT 59.183 36.000 0.00 0.00 0.00 2.32 R
2364 2389 0.102300 TGCACGTGTATATGAGCGCT 59.898 50.000 11.27 11.27 32.85 5.92 R
3272 3364 1.326213 CCAATGTATGGCCCCGCAAA 61.326 55.000 0.00 0.00 43.80 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.534042 TAGTCTCCTCCTCCTGGTTG 57.466 55.000 0.00 0.00 34.23 3.77
20 21 0.907230 AGTCTCCTCCTCCTGGTTGC 60.907 60.000 0.00 0.00 34.23 4.17
21 22 1.158466 TCTCCTCCTCCTGGTTGCA 59.842 57.895 0.00 0.00 34.23 4.08
22 23 0.473694 TCTCCTCCTCCTGGTTGCAA 60.474 55.000 0.00 0.00 34.23 4.08
23 24 0.401738 CTCCTCCTCCTGGTTGCAAA 59.598 55.000 0.00 0.00 34.23 3.68
24 25 0.850100 TCCTCCTCCTGGTTGCAAAA 59.150 50.000 0.00 0.00 34.23 2.44
25 26 1.216678 TCCTCCTCCTGGTTGCAAAAA 59.783 47.619 0.00 0.00 34.23 1.94
26 27 1.615392 CCTCCTCCTGGTTGCAAAAAG 59.385 52.381 0.00 1.17 34.23 2.27
27 28 1.615392 CTCCTCCTGGTTGCAAAAAGG 59.385 52.381 18.56 18.56 34.15 3.11
28 29 1.216678 TCCTCCTGGTTGCAAAAAGGA 59.783 47.619 23.35 23.35 38.30 3.36
29 30 1.341209 CCTCCTGGTTGCAAAAAGGAC 59.659 52.381 21.82 1.62 36.37 3.85
30 31 2.031120 CTCCTGGTTGCAAAAAGGACA 58.969 47.619 21.82 8.09 36.37 4.02
31 32 2.629617 CTCCTGGTTGCAAAAAGGACAT 59.370 45.455 21.82 0.00 36.37 3.06
32 33 2.364970 TCCTGGTTGCAAAAAGGACATG 59.635 45.455 21.82 0.00 36.37 3.21
33 34 2.364970 CCTGGTTGCAAAAAGGACATGA 59.635 45.455 19.52 0.00 34.64 3.07
34 35 3.553508 CCTGGTTGCAAAAAGGACATGAG 60.554 47.826 19.52 0.00 34.64 2.90
35 36 3.030291 TGGTTGCAAAAAGGACATGAGT 58.970 40.909 0.00 0.00 0.00 3.41
36 37 3.068024 TGGTTGCAAAAAGGACATGAGTC 59.932 43.478 0.00 0.00 44.21 3.36
37 38 3.068024 GGTTGCAAAAAGGACATGAGTCA 59.932 43.478 0.00 0.00 46.80 3.41
38 39 4.262164 GGTTGCAAAAAGGACATGAGTCAT 60.262 41.667 0.00 0.00 46.80 3.06
39 40 4.508461 TGCAAAAAGGACATGAGTCATG 57.492 40.909 27.88 27.88 46.80 3.07
40 41 4.143543 TGCAAAAAGGACATGAGTCATGA 58.856 39.130 34.38 9.56 46.80 3.07
41 42 4.768448 TGCAAAAAGGACATGAGTCATGAT 59.232 37.500 34.38 20.56 46.80 2.45
42 43 5.100259 GCAAAAAGGACATGAGTCATGATG 58.900 41.667 34.38 20.80 46.80 3.07
43 44 4.978083 AAAAGGACATGAGTCATGATGC 57.022 40.909 34.38 23.43 46.80 3.91
44 45 2.235845 AGGACATGAGTCATGATGCG 57.764 50.000 34.38 12.35 46.80 4.73
45 46 1.202615 AGGACATGAGTCATGATGCGG 60.203 52.381 34.38 11.66 46.80 5.69
46 47 1.224075 GACATGAGTCATGATGCGGG 58.776 55.000 34.38 10.97 43.81 6.13
47 48 0.832626 ACATGAGTCATGATGCGGGA 59.167 50.000 34.38 0.00 43.81 5.14
48 49 1.202615 ACATGAGTCATGATGCGGGAG 60.203 52.381 34.38 9.58 43.81 4.30
49 50 1.126488 ATGAGTCATGATGCGGGAGT 58.874 50.000 4.39 0.00 0.00 3.85
50 51 0.461548 TGAGTCATGATGCGGGAGTC 59.538 55.000 0.00 0.00 0.00 3.36
51 52 0.249657 GAGTCATGATGCGGGAGTCC 60.250 60.000 0.00 0.00 0.00 3.85
52 53 0.689080 AGTCATGATGCGGGAGTCCT 60.689 55.000 9.58 0.00 0.00 3.85
53 54 0.249657 GTCATGATGCGGGAGTCCTC 60.250 60.000 9.58 0.00 0.00 3.71
54 55 1.300465 CATGATGCGGGAGTCCTCG 60.300 63.158 9.58 12.09 0.00 4.63
55 56 1.758514 ATGATGCGGGAGTCCTCGT 60.759 57.895 17.72 8.64 0.00 4.18
56 57 1.739338 ATGATGCGGGAGTCCTCGTC 61.739 60.000 17.72 15.66 35.05 4.20
57 58 3.471244 GATGCGGGAGTCCTCGTCG 62.471 68.421 17.72 10.64 0.00 5.12
58 59 3.989838 ATGCGGGAGTCCTCGTCGA 62.990 63.158 17.72 0.00 31.82 4.20
59 60 3.878519 GCGGGAGTCCTCGTCGAG 61.879 72.222 15.53 15.53 31.82 4.04
60 61 3.878519 CGGGAGTCCTCGTCGAGC 61.879 72.222 17.02 4.26 31.82 5.03
61 62 2.750637 GGGAGTCCTCGTCGAGCA 60.751 66.667 17.02 0.00 0.00 4.26
62 63 2.341101 GGGAGTCCTCGTCGAGCAA 61.341 63.158 17.02 4.14 0.00 3.91
63 64 1.137825 GGAGTCCTCGTCGAGCAAG 59.862 63.158 17.02 3.72 0.00 4.01
64 65 1.515304 GAGTCCTCGTCGAGCAAGC 60.515 63.158 17.02 6.17 0.00 4.01
65 66 2.507324 GTCCTCGTCGAGCAAGCC 60.507 66.667 17.02 0.00 0.00 4.35
66 67 2.676822 TCCTCGTCGAGCAAGCCT 60.677 61.111 17.02 0.00 0.00 4.58
67 68 1.378119 TCCTCGTCGAGCAAGCCTA 60.378 57.895 17.02 0.00 0.00 3.93
68 69 0.752009 TCCTCGTCGAGCAAGCCTAT 60.752 55.000 17.02 0.00 0.00 2.57
69 70 0.318275 CCTCGTCGAGCAAGCCTATC 60.318 60.000 17.02 0.00 0.00 2.08
70 71 0.665835 CTCGTCGAGCAAGCCTATCT 59.334 55.000 9.74 0.00 0.00 1.98
71 72 0.382158 TCGTCGAGCAAGCCTATCTG 59.618 55.000 0.00 0.00 0.00 2.90
72 73 0.382158 CGTCGAGCAAGCCTATCTGA 59.618 55.000 0.00 0.00 0.00 3.27
73 74 1.846541 GTCGAGCAAGCCTATCTGAC 58.153 55.000 0.00 0.00 0.00 3.51
74 75 0.382158 TCGAGCAAGCCTATCTGACG 59.618 55.000 0.00 0.00 0.00 4.35
75 76 0.101399 CGAGCAAGCCTATCTGACGT 59.899 55.000 0.00 0.00 0.00 4.34
76 77 1.846541 GAGCAAGCCTATCTGACGTC 58.153 55.000 9.11 9.11 0.00 4.34
77 78 0.461961 AGCAAGCCTATCTGACGTCC 59.538 55.000 14.12 0.00 0.00 4.79
78 79 0.872021 GCAAGCCTATCTGACGTCCG 60.872 60.000 14.12 6.91 0.00 4.79
79 80 0.249073 CAAGCCTATCTGACGTCCGG 60.249 60.000 14.12 6.19 0.00 5.14
80 81 2.017559 AAGCCTATCTGACGTCCGGC 62.018 60.000 14.12 15.89 37.80 6.13
81 82 2.782222 GCCTATCTGACGTCCGGCA 61.782 63.158 14.12 0.00 37.48 5.69
82 83 1.065928 CCTATCTGACGTCCGGCAC 59.934 63.158 14.12 0.00 0.00 5.01
83 84 1.065928 CTATCTGACGTCCGGCACC 59.934 63.158 14.12 0.00 0.00 5.01
84 85 1.379443 TATCTGACGTCCGGCACCT 60.379 57.895 14.12 0.00 0.00 4.00
85 86 0.107066 TATCTGACGTCCGGCACCTA 60.107 55.000 14.12 0.00 0.00 3.08
86 87 0.755698 ATCTGACGTCCGGCACCTAT 60.756 55.000 14.12 0.00 0.00 2.57
87 88 0.968901 TCTGACGTCCGGCACCTATT 60.969 55.000 14.12 0.00 0.00 1.73
88 89 0.806102 CTGACGTCCGGCACCTATTG 60.806 60.000 14.12 0.00 0.00 1.90
105 106 2.047844 GCAGAGAGCAAGCCACGA 60.048 61.111 0.00 0.00 44.79 4.35
106 107 2.099431 GCAGAGAGCAAGCCACGAG 61.099 63.158 0.00 0.00 44.79 4.18
107 108 1.588597 CAGAGAGCAAGCCACGAGA 59.411 57.895 0.00 0.00 0.00 4.04
108 109 0.037882 CAGAGAGCAAGCCACGAGAA 60.038 55.000 0.00 0.00 0.00 2.87
109 110 0.681733 AGAGAGCAAGCCACGAGAAA 59.318 50.000 0.00 0.00 0.00 2.52
110 111 1.070758 AGAGAGCAAGCCACGAGAAAA 59.929 47.619 0.00 0.00 0.00 2.29
111 112 1.873591 GAGAGCAAGCCACGAGAAAAA 59.126 47.619 0.00 0.00 0.00 1.94
125 126 4.393308 AAAAACGGCACTGCAACG 57.607 50.000 2.82 0.60 0.00 4.10
126 127 1.226831 AAAAACGGCACTGCAACGG 60.227 52.632 2.82 0.00 0.00 4.44
127 128 1.658686 AAAAACGGCACTGCAACGGA 61.659 50.000 2.82 0.00 0.00 4.69
128 129 2.058829 AAAACGGCACTGCAACGGAG 62.059 55.000 2.82 0.00 0.00 4.63
133 134 2.281761 CACTGCAACGGAGCCCTT 60.282 61.111 0.00 0.00 0.00 3.95
134 135 2.281761 ACTGCAACGGAGCCCTTG 60.282 61.111 0.00 0.00 0.00 3.61
135 136 2.032528 CTGCAACGGAGCCCTTGA 59.967 61.111 2.96 0.00 0.00 3.02
136 137 1.377725 CTGCAACGGAGCCCTTGAT 60.378 57.895 2.96 0.00 0.00 2.57
137 138 0.962356 CTGCAACGGAGCCCTTGATT 60.962 55.000 2.96 0.00 0.00 2.57
138 139 0.539438 TGCAACGGAGCCCTTGATTT 60.539 50.000 2.96 0.00 0.00 2.17
139 140 0.171231 GCAACGGAGCCCTTGATTTC 59.829 55.000 2.96 0.00 0.00 2.17
140 141 0.811281 CAACGGAGCCCTTGATTTCC 59.189 55.000 0.00 0.00 0.00 3.13
141 142 0.404040 AACGGAGCCCTTGATTTCCA 59.596 50.000 0.00 0.00 0.00 3.53
142 143 0.322546 ACGGAGCCCTTGATTTCCAC 60.323 55.000 0.00 0.00 0.00 4.02
143 144 1.369091 CGGAGCCCTTGATTTCCACG 61.369 60.000 0.00 0.00 0.00 4.94
144 145 0.035439 GGAGCCCTTGATTTCCACGA 60.035 55.000 0.00 0.00 0.00 4.35
145 146 1.373570 GAGCCCTTGATTTCCACGAG 58.626 55.000 0.00 0.00 0.00 4.18
146 147 0.984230 AGCCCTTGATTTCCACGAGA 59.016 50.000 0.00 0.00 0.00 4.04
147 148 1.351017 AGCCCTTGATTTCCACGAGAA 59.649 47.619 0.00 0.00 0.00 2.87
148 149 1.740025 GCCCTTGATTTCCACGAGAAG 59.260 52.381 0.00 0.00 35.40 2.85
149 150 2.876079 GCCCTTGATTTCCACGAGAAGT 60.876 50.000 0.00 0.00 35.40 3.01
150 151 3.003480 CCCTTGATTTCCACGAGAAGTC 58.997 50.000 0.00 0.00 40.65 3.01
151 152 3.003480 CCTTGATTTCCACGAGAAGTCC 58.997 50.000 10.96 0.16 39.77 3.85
152 153 2.363788 TGATTTCCACGAGAAGTCCG 57.636 50.000 10.96 0.00 39.77 4.79
153 154 1.000145 GATTTCCACGAGAAGTCCGC 59.000 55.000 0.00 0.00 35.68 5.54
154 155 0.391263 ATTTCCACGAGAAGTCCGCC 60.391 55.000 0.00 0.00 35.40 6.13
155 156 2.758770 TTTCCACGAGAAGTCCGCCG 62.759 60.000 0.00 0.00 35.40 6.46
156 157 4.052229 CCACGAGAAGTCCGCCGT 62.052 66.667 0.00 0.00 35.46 5.68
157 158 2.805353 CACGAGAAGTCCGCCGTG 60.805 66.667 0.00 0.00 44.66 4.94
158 159 4.052229 ACGAGAAGTCCGCCGTGG 62.052 66.667 0.00 0.00 40.09 4.94
159 160 4.796231 CGAGAAGTCCGCCGTGGG 62.796 72.222 0.00 0.00 38.76 4.61
172 173 2.509336 GTGGGCACGATCGTCCAG 60.509 66.667 24.46 13.33 0.00 3.86
173 174 4.451150 TGGGCACGATCGTCCAGC 62.451 66.667 26.88 22.99 0.00 4.85
179 180 4.812476 CGATCGTCCAGCCCGCAA 62.812 66.667 7.03 0.00 0.00 4.85
180 181 2.435938 GATCGTCCAGCCCGCAAA 60.436 61.111 0.00 0.00 0.00 3.68
181 182 1.819632 GATCGTCCAGCCCGCAAAT 60.820 57.895 0.00 0.00 0.00 2.32
182 183 1.376609 GATCGTCCAGCCCGCAAATT 61.377 55.000 0.00 0.00 0.00 1.82
183 184 0.965363 ATCGTCCAGCCCGCAAATTT 60.965 50.000 0.00 0.00 0.00 1.82
184 185 1.154035 CGTCCAGCCCGCAAATTTC 60.154 57.895 0.00 0.00 0.00 2.17
185 186 1.154035 GTCCAGCCCGCAAATTTCG 60.154 57.895 0.00 0.00 0.00 3.46
186 187 2.181525 CCAGCCCGCAAATTTCGG 59.818 61.111 17.11 17.11 46.05 4.30
187 188 2.635443 CCAGCCCGCAAATTTCGGT 61.635 57.895 20.30 7.11 45.09 4.69
188 189 1.444212 CAGCCCGCAAATTTCGGTG 60.444 57.895 20.30 15.04 45.09 4.94
189 190 2.809174 GCCCGCAAATTTCGGTGC 60.809 61.111 20.30 18.75 45.09 5.01
190 191 2.647875 CCCGCAAATTTCGGTGCA 59.352 55.556 20.30 0.00 45.09 4.57
191 192 1.215117 CCCGCAAATTTCGGTGCAT 59.785 52.632 20.30 0.00 45.09 3.96
192 193 0.453793 CCCGCAAATTTCGGTGCATA 59.546 50.000 20.30 0.00 45.09 3.14
193 194 1.066908 CCCGCAAATTTCGGTGCATAT 59.933 47.619 20.30 0.00 45.09 1.78
194 195 2.118683 CCGCAAATTTCGGTGCATATG 58.881 47.619 16.28 0.00 40.94 1.78
195 196 1.518102 CGCAAATTTCGGTGCATATGC 59.482 47.619 21.09 21.09 40.94 3.14
196 197 1.860326 GCAAATTTCGGTGCATATGCC 59.140 47.619 24.54 15.25 40.58 4.40
202 203 3.566261 GGTGCATATGCCGATCGG 58.434 61.111 30.03 30.03 41.18 4.18
203 204 1.005037 GGTGCATATGCCGATCGGA 60.005 57.895 37.64 21.99 41.18 4.55
204 205 1.291877 GGTGCATATGCCGATCGGAC 61.292 60.000 37.64 26.66 41.18 4.79
205 206 0.319900 GTGCATATGCCGATCGGACT 60.320 55.000 37.64 24.01 41.18 3.85
206 207 0.319813 TGCATATGCCGATCGGACTG 60.320 55.000 37.64 25.19 41.18 3.51
207 208 0.038251 GCATATGCCGATCGGACTGA 60.038 55.000 37.64 18.60 37.50 3.41
208 209 1.988063 CATATGCCGATCGGACTGAG 58.012 55.000 37.64 18.81 37.50 3.35
209 210 1.541588 CATATGCCGATCGGACTGAGA 59.458 52.381 37.64 14.80 37.50 3.27
210 211 1.687563 TATGCCGATCGGACTGAGAA 58.312 50.000 37.64 12.42 37.50 2.87
211 212 0.103208 ATGCCGATCGGACTGAGAAC 59.897 55.000 37.64 17.12 37.50 3.01
212 213 0.965866 TGCCGATCGGACTGAGAACT 60.966 55.000 37.64 0.00 37.50 3.01
213 214 0.248702 GCCGATCGGACTGAGAACTC 60.249 60.000 37.64 11.79 37.50 3.01
214 215 1.095600 CCGATCGGACTGAGAACTCA 58.904 55.000 30.62 4.45 37.50 3.41
215 216 1.202200 CCGATCGGACTGAGAACTCAC 60.202 57.143 30.62 0.00 37.50 3.51
216 217 1.202200 CGATCGGACTGAGAACTCACC 60.202 57.143 7.38 1.51 35.46 4.02
217 218 0.811915 ATCGGACTGAGAACTCACCG 59.188 55.000 20.33 20.33 45.18 4.94
218 219 1.444553 CGGACTGAGAACTCACCGC 60.445 63.158 16.61 4.05 40.60 5.68
219 220 1.079750 GGACTGAGAACTCACCGCC 60.080 63.158 0.00 0.00 35.46 6.13
220 221 1.536943 GGACTGAGAACTCACCGCCT 61.537 60.000 0.00 0.00 35.46 5.52
221 222 0.109039 GACTGAGAACTCACCGCCTC 60.109 60.000 0.00 0.00 35.46 4.70
222 223 1.153939 CTGAGAACTCACCGCCTCG 60.154 63.158 0.00 0.00 35.46 4.63
223 224 2.507324 GAGAACTCACCGCCTCGC 60.507 66.667 0.00 0.00 0.00 5.03
224 225 2.992114 AGAACTCACCGCCTCGCT 60.992 61.111 0.00 0.00 0.00 4.93
225 226 2.507324 GAACTCACCGCCTCGCTC 60.507 66.667 0.00 0.00 0.00 5.03
226 227 3.991536 GAACTCACCGCCTCGCTCC 62.992 68.421 0.00 0.00 0.00 4.70
235 236 2.765807 CCTCGCTCCCAGGACCAT 60.766 66.667 0.00 0.00 31.91 3.55
236 237 2.801631 CCTCGCTCCCAGGACCATC 61.802 68.421 0.00 0.00 31.91 3.51
237 238 1.760086 CTCGCTCCCAGGACCATCT 60.760 63.158 0.00 0.00 0.00 2.90
238 239 2.025767 CTCGCTCCCAGGACCATCTG 62.026 65.000 0.00 0.00 34.70 2.90
239 240 2.060383 CGCTCCCAGGACCATCTGA 61.060 63.158 0.00 0.00 36.93 3.27
240 241 1.617018 CGCTCCCAGGACCATCTGAA 61.617 60.000 0.00 0.00 36.93 3.02
241 242 0.107459 GCTCCCAGGACCATCTGAAC 60.107 60.000 0.00 0.00 36.93 3.18
242 243 1.279496 CTCCCAGGACCATCTGAACA 58.721 55.000 0.00 0.00 36.93 3.18
243 244 0.984230 TCCCAGGACCATCTGAACAC 59.016 55.000 0.00 0.00 36.93 3.32
244 245 0.692476 CCCAGGACCATCTGAACACA 59.308 55.000 0.00 0.00 36.93 3.72
245 246 1.283029 CCCAGGACCATCTGAACACAT 59.717 52.381 0.00 0.00 36.93 3.21
246 247 2.636830 CCAGGACCATCTGAACACATC 58.363 52.381 0.00 0.00 36.93 3.06
247 248 2.636830 CAGGACCATCTGAACACATCC 58.363 52.381 0.00 0.00 36.93 3.51
248 249 1.208052 AGGACCATCTGAACACATCCG 59.792 52.381 0.00 0.00 0.00 4.18
249 250 1.656652 GACCATCTGAACACATCCGG 58.343 55.000 0.00 0.00 0.00 5.14
250 251 0.392998 ACCATCTGAACACATCCGGC 60.393 55.000 0.00 0.00 0.00 6.13
251 252 0.392863 CCATCTGAACACATCCGGCA 60.393 55.000 0.00 0.00 0.00 5.69
252 253 1.671979 CATCTGAACACATCCGGCAT 58.328 50.000 0.00 0.00 0.00 4.40
253 254 1.332686 CATCTGAACACATCCGGCATG 59.667 52.381 0.00 4.32 38.64 4.06
255 256 0.729116 CTGAACACATCCGGCATGTC 59.271 55.000 14.28 6.82 44.60 3.06
256 257 0.676466 TGAACACATCCGGCATGTCC 60.676 55.000 14.28 8.93 44.60 4.02
257 258 0.392998 GAACACATCCGGCATGTCCT 60.393 55.000 14.28 6.76 44.60 3.85
258 259 0.392998 AACACATCCGGCATGTCCTC 60.393 55.000 14.28 0.00 44.60 3.71
259 260 1.524621 CACATCCGGCATGTCCTCC 60.525 63.158 14.28 0.00 44.60 4.30
260 261 1.690633 ACATCCGGCATGTCCTCCT 60.691 57.895 12.13 0.00 42.62 3.69
261 262 1.227764 CATCCGGCATGTCCTCCTG 60.228 63.158 0.00 0.00 0.00 3.86
262 263 1.690633 ATCCGGCATGTCCTCCTGT 60.691 57.895 0.00 0.00 0.00 4.00
263 264 0.398522 ATCCGGCATGTCCTCCTGTA 60.399 55.000 0.00 0.00 0.00 2.74
264 265 0.616395 TCCGGCATGTCCTCCTGTAA 60.616 55.000 0.00 0.00 0.00 2.41
265 266 0.462047 CCGGCATGTCCTCCTGTAAC 60.462 60.000 0.00 0.00 0.00 2.50
266 267 0.806102 CGGCATGTCCTCCTGTAACG 60.806 60.000 0.00 0.00 0.00 3.18
267 268 0.249398 GGCATGTCCTCCTGTAACGT 59.751 55.000 0.00 0.00 0.00 3.99
268 269 1.359848 GCATGTCCTCCTGTAACGTG 58.640 55.000 0.00 0.00 33.92 4.49
269 270 1.067142 GCATGTCCTCCTGTAACGTGA 60.067 52.381 0.00 0.00 32.81 4.35
270 271 2.418746 GCATGTCCTCCTGTAACGTGAT 60.419 50.000 0.00 0.00 32.81 3.06
271 272 3.448686 CATGTCCTCCTGTAACGTGATC 58.551 50.000 0.00 0.00 32.81 2.92
272 273 2.803956 TGTCCTCCTGTAACGTGATCT 58.196 47.619 0.00 0.00 0.00 2.75
273 274 2.753452 TGTCCTCCTGTAACGTGATCTC 59.247 50.000 0.00 0.00 0.00 2.75
274 275 2.753452 GTCCTCCTGTAACGTGATCTCA 59.247 50.000 0.00 0.00 0.00 3.27
275 276 2.753452 TCCTCCTGTAACGTGATCTCAC 59.247 50.000 0.07 0.07 43.15 3.51
276 277 2.755655 CCTCCTGTAACGTGATCTCACT 59.244 50.000 8.57 0.00 44.34 3.41
277 278 3.428180 CCTCCTGTAACGTGATCTCACTG 60.428 52.174 8.57 5.05 44.34 3.66
278 279 3.418047 TCCTGTAACGTGATCTCACTGA 58.582 45.455 8.57 0.00 44.34 3.41
279 280 4.017126 TCCTGTAACGTGATCTCACTGAT 58.983 43.478 8.57 0.89 44.34 2.90
280 281 4.462834 TCCTGTAACGTGATCTCACTGATT 59.537 41.667 8.57 3.48 44.34 2.57
281 282 4.800993 CCTGTAACGTGATCTCACTGATTC 59.199 45.833 8.57 0.00 44.34 2.52
282 283 5.393569 CCTGTAACGTGATCTCACTGATTCT 60.394 44.000 8.57 0.00 44.34 2.40
283 284 5.641709 TGTAACGTGATCTCACTGATTCTC 58.358 41.667 8.57 0.50 44.34 2.87
284 285 3.412981 ACGTGATCTCACTGATTCTCG 57.587 47.619 8.57 10.00 44.34 4.04
285 286 2.750166 ACGTGATCTCACTGATTCTCGT 59.250 45.455 8.57 10.87 44.34 4.18
286 287 3.181505 ACGTGATCTCACTGATTCTCGTC 60.182 47.826 8.57 0.00 44.34 4.20
287 288 3.701241 GTGATCTCACTGATTCTCGTCC 58.299 50.000 3.07 0.00 43.25 4.79
288 289 3.129462 GTGATCTCACTGATTCTCGTCCA 59.871 47.826 3.07 0.00 43.25 4.02
289 290 3.379688 TGATCTCACTGATTCTCGTCCAG 59.620 47.826 0.00 0.00 35.14 3.86
290 291 3.073274 TCTCACTGATTCTCGTCCAGA 57.927 47.619 0.00 0.00 0.00 3.86
291 292 4.261155 GATCTCACTGATTCTCGTCCAGAG 60.261 50.000 0.00 0.00 40.91 3.35
292 293 2.095461 TCACTGATTCTCGTCCAGAGG 58.905 52.381 0.00 0.00 46.82 3.69
293 294 0.820871 ACTGATTCTCGTCCAGAGGC 59.179 55.000 0.00 0.00 46.82 4.70
294 295 1.110442 CTGATTCTCGTCCAGAGGCT 58.890 55.000 0.00 0.00 46.82 4.58
295 296 0.820226 TGATTCTCGTCCAGAGGCTG 59.180 55.000 0.00 0.00 46.82 4.85
296 297 1.107114 GATTCTCGTCCAGAGGCTGA 58.893 55.000 0.00 0.00 46.82 4.26
297 298 1.066908 GATTCTCGTCCAGAGGCTGAG 59.933 57.143 0.00 0.00 46.82 3.35
298 299 0.967887 TTCTCGTCCAGAGGCTGAGG 60.968 60.000 0.00 0.00 46.82 3.86
299 300 1.680651 CTCGTCCAGAGGCTGAGGT 60.681 63.158 0.00 0.00 43.20 3.85
300 301 0.394488 CTCGTCCAGAGGCTGAGGTA 60.394 60.000 0.00 0.00 43.20 3.08
301 302 0.680280 TCGTCCAGAGGCTGAGGTAC 60.680 60.000 0.00 0.00 32.44 3.34
302 303 4.910256 CTCGTCCAGAGGCTGAGGTACT 62.910 59.091 0.00 0.00 42.78 2.73
316 317 3.484953 AGGTACTCCCTTATGGTGTCA 57.515 47.619 0.00 0.00 42.73 3.58
317 318 3.798515 AGGTACTCCCTTATGGTGTCAA 58.201 45.455 0.00 0.00 42.73 3.18
318 319 4.371681 AGGTACTCCCTTATGGTGTCAAT 58.628 43.478 0.00 0.00 42.73 2.57
319 320 4.788617 AGGTACTCCCTTATGGTGTCAATT 59.211 41.667 0.00 0.00 42.73 2.32
320 321 5.253096 AGGTACTCCCTTATGGTGTCAATTT 59.747 40.000 0.00 0.00 42.73 1.82
321 322 5.357032 GGTACTCCCTTATGGTGTCAATTTG 59.643 44.000 0.00 0.00 41.11 2.32
322 323 4.998051 ACTCCCTTATGGTGTCAATTTGT 58.002 39.130 0.00 0.00 36.02 2.83
323 324 6.134535 ACTCCCTTATGGTGTCAATTTGTA 57.865 37.500 0.00 0.00 36.02 2.41
324 325 6.180472 ACTCCCTTATGGTGTCAATTTGTAG 58.820 40.000 0.00 0.00 36.02 2.74
325 326 6.012858 ACTCCCTTATGGTGTCAATTTGTAGA 60.013 38.462 0.00 0.00 36.02 2.59
326 327 6.969043 TCCCTTATGGTGTCAATTTGTAGAT 58.031 36.000 0.00 0.00 34.77 1.98
327 328 7.054124 TCCCTTATGGTGTCAATTTGTAGATC 58.946 38.462 0.00 0.00 34.77 2.75
328 329 6.828273 CCCTTATGGTGTCAATTTGTAGATCA 59.172 38.462 0.00 0.00 0.00 2.92
329 330 7.012704 CCCTTATGGTGTCAATTTGTAGATCAG 59.987 40.741 0.00 0.00 0.00 2.90
330 331 7.012704 CCTTATGGTGTCAATTTGTAGATCAGG 59.987 40.741 0.00 0.00 0.00 3.86
331 332 5.241403 TGGTGTCAATTTGTAGATCAGGT 57.759 39.130 0.00 0.00 0.00 4.00
332 333 5.245531 TGGTGTCAATTTGTAGATCAGGTC 58.754 41.667 0.00 0.00 0.00 3.85
333 334 4.636206 GGTGTCAATTTGTAGATCAGGTCC 59.364 45.833 0.00 0.00 0.00 4.46
334 335 5.491982 GTGTCAATTTGTAGATCAGGTCCT 58.508 41.667 0.00 0.00 0.00 3.85
335 336 6.351881 GGTGTCAATTTGTAGATCAGGTCCTA 60.352 42.308 0.00 0.00 0.00 2.94
336 337 6.758886 GTGTCAATTTGTAGATCAGGTCCTAG 59.241 42.308 0.00 0.00 0.00 3.02
337 338 6.667848 TGTCAATTTGTAGATCAGGTCCTAGA 59.332 38.462 0.00 0.00 0.00 2.43
338 339 7.345653 TGTCAATTTGTAGATCAGGTCCTAGAT 59.654 37.037 0.00 0.00 0.00 1.98
339 340 7.870445 GTCAATTTGTAGATCAGGTCCTAGATC 59.130 40.741 17.20 17.20 40.68 2.75
341 342 7.775053 ATTTGTAGATCAGGTCCTAGATCTC 57.225 40.000 25.08 19.38 45.85 2.75
342 343 6.523035 TTGTAGATCAGGTCCTAGATCTCT 57.477 41.667 25.08 13.94 45.85 3.10
343 344 6.523035 TGTAGATCAGGTCCTAGATCTCTT 57.477 41.667 25.08 12.92 45.85 2.85
344 345 6.303054 TGTAGATCAGGTCCTAGATCTCTTG 58.697 44.000 25.08 0.00 45.85 3.02
345 346 4.151883 AGATCAGGTCCTAGATCTCTTGC 58.848 47.826 19.92 4.00 45.85 4.01
346 347 2.672098 TCAGGTCCTAGATCTCTTGCC 58.328 52.381 0.00 0.00 0.00 4.52
347 348 1.691434 CAGGTCCTAGATCTCTTGCCC 59.309 57.143 0.00 0.00 0.00 5.36
348 349 1.292242 AGGTCCTAGATCTCTTGCCCA 59.708 52.381 0.00 0.00 0.00 5.36
349 350 2.090267 AGGTCCTAGATCTCTTGCCCAT 60.090 50.000 0.00 0.00 0.00 4.00
350 351 2.038295 GGTCCTAGATCTCTTGCCCATG 59.962 54.545 0.00 0.00 0.00 3.66
351 352 1.696336 TCCTAGATCTCTTGCCCATGC 59.304 52.381 0.00 0.00 38.26 4.06
360 361 2.279743 TGCCCATGCATTCCCCTC 59.720 61.111 0.00 0.00 44.23 4.30
361 362 2.908940 GCCCATGCATTCCCCTCG 60.909 66.667 0.00 0.00 37.47 4.63
362 363 2.918248 CCCATGCATTCCCCTCGA 59.082 61.111 0.00 0.00 0.00 4.04
363 364 1.228063 CCCATGCATTCCCCTCGAG 60.228 63.158 5.13 5.13 0.00 4.04
364 365 1.699054 CCCATGCATTCCCCTCGAGA 61.699 60.000 15.71 0.00 0.00 4.04
365 366 0.250209 CCATGCATTCCCCTCGAGAG 60.250 60.000 15.71 0.00 0.00 3.20
366 367 0.883814 CATGCATTCCCCTCGAGAGC 60.884 60.000 15.71 8.33 0.00 4.09
367 368 2.049627 ATGCATTCCCCTCGAGAGCC 62.050 60.000 15.71 0.00 0.00 4.70
368 369 2.419198 CATTCCCCTCGAGAGCCG 59.581 66.667 15.71 0.00 40.25 5.52
369 370 2.127869 CATTCCCCTCGAGAGCCGA 61.128 63.158 15.71 0.05 46.35 5.54
399 400 4.554363 CGTCCGTCGCAGCCTAGG 62.554 72.222 3.67 3.67 0.00 3.02
400 401 4.874977 GTCCGTCGCAGCCTAGGC 62.875 72.222 27.19 27.19 42.33 3.93
410 411 3.541713 GCCTAGGCGGGACTCCAG 61.542 72.222 20.16 0.00 34.29 3.86
411 412 3.541713 CCTAGGCGGGACTCCAGC 61.542 72.222 11.52 11.52 34.29 4.85
412 413 2.759973 CTAGGCGGGACTCCAGCA 60.760 66.667 20.26 1.74 34.29 4.41
413 414 2.041922 TAGGCGGGACTCCAGCAT 60.042 61.111 20.26 16.32 34.29 3.79
414 415 2.374830 CTAGGCGGGACTCCAGCATG 62.375 65.000 20.26 7.12 34.29 4.06
416 417 4.783621 GCGGGACTCCAGCATGCA 62.784 66.667 21.98 0.00 34.38 3.96
426 427 3.276857 CTCCAGCATGCACTGTAAGAAT 58.723 45.455 21.98 0.00 35.83 2.40
427 428 3.011818 TCCAGCATGCACTGTAAGAATG 58.988 45.455 21.98 4.82 35.83 2.67
441 442 8.783093 CACTGTAAGAATGGTATCAAACTTCAA 58.217 33.333 2.11 0.00 37.43 2.69
442 443 9.349713 ACTGTAAGAATGGTATCAAACTTCAAA 57.650 29.630 2.11 0.00 37.43 2.69
461 462 8.143193 ACTTCAAAATAAAGATGATTGTGTGCA 58.857 29.630 0.00 0.00 0.00 4.57
462 463 9.146984 CTTCAAAATAAAGATGATTGTGTGCAT 57.853 29.630 0.00 0.00 0.00 3.96
468 469 0.736636 ATGATTGTGTGCATCAGCCG 59.263 50.000 0.00 0.00 41.13 5.52
471 472 0.606130 ATTGTGTGCATCAGCCGACA 60.606 50.000 0.00 0.00 41.13 4.35
472 473 1.506309 TTGTGTGCATCAGCCGACAC 61.506 55.000 0.00 0.00 43.89 3.67
476 477 0.950555 GTGCATCAGCCGACACAGAA 60.951 55.000 0.00 0.00 41.13 3.02
491 492 1.339151 ACAGAAGCCCGATTCTTCACC 60.339 52.381 11.75 0.00 41.68 4.02
496 497 2.437413 AGCCCGATTCTTCACCTTTTC 58.563 47.619 0.00 0.00 0.00 2.29
497 498 2.159382 GCCCGATTCTTCACCTTTTCA 58.841 47.619 0.00 0.00 0.00 2.69
498 499 2.095212 GCCCGATTCTTCACCTTTTCAC 60.095 50.000 0.00 0.00 0.00 3.18
525 526 9.634163 AAAGAAAAACTTATGTTCGAAAACAGT 57.366 25.926 0.00 0.00 42.17 3.55
552 553 5.386958 TGAATACTGTCATATACCGGCTC 57.613 43.478 0.00 0.00 0.00 4.70
553 554 4.082949 TGAATACTGTCATATACCGGCTCG 60.083 45.833 0.00 0.00 0.00 5.03
625 626 6.770746 AAGGACAAAGTATAGACTTCGCTA 57.229 37.500 2.67 0.00 45.50 4.26
640 641 8.092521 AGACTTCGCTAATGAAAATATGATGG 57.907 34.615 0.00 0.00 0.00 3.51
668 669 7.226441 TGGAATATACCTTCTGGATGAATGTG 58.774 38.462 0.00 0.00 35.62 3.21
757 758 0.888736 TCGTGTGCACCAATCCCTTG 60.889 55.000 15.69 0.00 0.00 3.61
771 772 6.125029 CCAATCCCTTGTATCTGACATTTCT 58.875 40.000 0.00 0.00 38.07 2.52
863 864 9.444600 GTCAGAACCAGGATGTTATTTTACTTA 57.555 33.333 0.00 0.00 0.00 2.24
866 867 9.802039 AGAACCAGGATGTTATTTTACTTAACA 57.198 29.630 0.00 0.00 42.11 2.41
916 919 8.142994 ACAATGACAAGACACAACTAAACTAG 57.857 34.615 0.00 0.00 0.00 2.57
919 922 7.108841 TGACAAGACACAACTAAACTAGAGT 57.891 36.000 0.00 0.00 0.00 3.24
921 924 8.133627 TGACAAGACACAACTAAACTAGAGTAC 58.866 37.037 0.00 0.00 0.00 2.73
922 925 8.004087 ACAAGACACAACTAAACTAGAGTACA 57.996 34.615 0.00 0.00 0.00 2.90
923 926 8.472413 ACAAGACACAACTAAACTAGAGTACAA 58.528 33.333 0.00 0.00 0.00 2.41
924 927 9.477484 CAAGACACAACTAAACTAGAGTACAAT 57.523 33.333 0.00 0.00 0.00 2.71
965 973 5.163311 GCCCCCAGCAAGAACATTATTTATT 60.163 40.000 0.00 0.00 42.97 1.40
968 976 8.650490 CCCCCAGCAAGAACATTATTTATTTAT 58.350 33.333 0.00 0.00 0.00 1.40
994 1002 9.895138 TTATTTAGCTAACTAACTAACCCTTGG 57.105 33.333 5.45 0.00 38.11 3.61
997 1005 6.443995 AGCTAACTAACTAACCCTTGGAAA 57.556 37.500 0.00 0.00 0.00 3.13
1047 1055 0.904649 TCATCCCATCAAGCGACACT 59.095 50.000 0.00 0.00 0.00 3.55
1051 1059 1.376424 CCATCAAGCGACACTGCCT 60.376 57.895 0.00 0.00 34.65 4.75
1052 1060 1.642037 CCATCAAGCGACACTGCCTG 61.642 60.000 0.00 0.00 34.65 4.85
1054 1062 2.460662 ATCAAGCGACACTGCCTGCT 62.461 55.000 0.00 0.00 39.89 4.24
1055 1063 2.667536 AAGCGACACTGCCTGCTG 60.668 61.111 0.00 0.00 37.81 4.41
1216 1224 0.890683 GCAAGCCAACTAGCAACCAT 59.109 50.000 0.00 0.00 34.23 3.55
1448 1456 0.818852 TCGCCGGTATCGTGTCCATA 60.819 55.000 1.90 0.00 33.95 2.74
1616 1624 2.251371 GTGGCCGACTTTTCACGC 59.749 61.111 0.00 0.00 0.00 5.34
1733 1741 2.505982 GCCGGAGCCATTCTGCTA 59.494 61.111 5.05 0.00 42.95 3.49
1985 1993 2.412847 GCAGGTTGAGTATTGCAACGTC 60.413 50.000 0.00 0.00 44.92 4.34
2009 2017 3.197790 CGCGCTGGGAAGGATGTG 61.198 66.667 5.56 0.00 0.00 3.21
2051 2059 1.557832 GTGGGCCACATGTTCTACCTA 59.442 52.381 31.26 0.00 34.08 3.08
2190 2210 2.175811 GTGTCCATCGGTTTGCGC 59.824 61.111 0.00 0.00 0.00 6.09
2193 2213 2.745884 TCCATCGGTTTGCGCTGG 60.746 61.111 9.73 6.04 0.00 4.85
2195 2215 2.625823 CCATCGGTTTGCGCTGGTT 61.626 57.895 9.73 0.00 0.00 3.67
2233 2253 0.105194 TTGTGTGGGTCTCTCCTGGA 60.105 55.000 0.00 0.00 36.25 3.86
2341 2366 6.101650 ACTTTCCAAAGCTTCAATTAAGGG 57.898 37.500 0.00 0.00 39.63 3.95
2347 2372 8.024145 TCCAAAGCTTCAATTAAGGGTTTTTA 57.976 30.769 0.00 0.00 35.58 1.52
2349 2374 8.556194 CCAAAGCTTCAATTAAGGGTTTTTAAC 58.444 33.333 0.00 0.00 35.58 2.01
2350 2375 9.103861 CAAAGCTTCAATTAAGGGTTTTTAACA 57.896 29.630 0.00 0.00 35.58 2.41
2351 2376 9.845740 AAAGCTTCAATTAAGGGTTTTTAACAT 57.154 25.926 0.00 0.00 35.58 2.71
2354 2379 9.923143 GCTTCAATTAAGGGTTTTTAACATAGT 57.077 29.630 0.00 0.00 35.58 2.12
2361 2386 7.662604 AAGGGTTTTTAACATAGTACAGACG 57.337 36.000 0.00 0.00 0.00 4.18
2362 2387 6.168389 AGGGTTTTTAACATAGTACAGACGG 58.832 40.000 0.00 0.00 0.00 4.79
2364 2389 6.650390 GGGTTTTTAACATAGTACAGACGGAA 59.350 38.462 0.00 0.00 0.00 4.30
2365 2390 7.148523 GGGTTTTTAACATAGTACAGACGGAAG 60.149 40.741 0.00 0.00 0.00 3.46
2370 2399 0.731417 TAGTACAGACGGAAGCGCTC 59.269 55.000 12.06 4.06 0.00 5.03
2385 2414 2.030274 AGCGCTCATATACACGTGCATA 60.030 45.455 17.22 13.68 35.49 3.14
2390 2419 4.745125 GCTCATATACACGTGCATACACTT 59.255 41.667 17.22 0.00 45.10 3.16
2392 2421 6.129168 GCTCATATACACGTGCATACACTTAC 60.129 42.308 17.22 0.00 45.10 2.34
2393 2422 6.210796 TCATATACACGTGCATACACTTACC 58.789 40.000 17.22 0.00 45.10 2.85
2405 2434 5.628200 GCATACACTTACCCCTATGAACACA 60.628 44.000 0.00 0.00 0.00 3.72
2406 2435 4.281898 ACACTTACCCCTATGAACACAC 57.718 45.455 0.00 0.00 0.00 3.82
2407 2436 3.649023 ACACTTACCCCTATGAACACACA 59.351 43.478 0.00 0.00 0.00 3.72
2409 2438 3.649023 ACTTACCCCTATGAACACACACA 59.351 43.478 0.00 0.00 0.00 3.72
2410 2439 4.288626 ACTTACCCCTATGAACACACACAT 59.711 41.667 0.00 0.00 0.00 3.21
2411 2440 3.071874 ACCCCTATGAACACACACATG 57.928 47.619 0.00 0.00 0.00 3.21
2413 2442 1.398041 CCCTATGAACACACACATGCG 59.602 52.381 0.00 0.00 0.00 4.73
2418 2447 1.595328 TGAACACACACATGCGTACAC 59.405 47.619 0.00 0.00 0.00 2.90
2419 2448 1.864711 GAACACACACATGCGTACACT 59.135 47.619 0.00 0.00 0.00 3.55
2420 2449 2.804697 ACACACACATGCGTACACTA 57.195 45.000 0.00 0.00 0.00 2.74
2423 2454 1.616865 ACACACATGCGTACACTACCT 59.383 47.619 0.00 0.00 0.00 3.08
2446 2477 0.884514 TGAGCACCTTCGAGAGACTG 59.115 55.000 0.00 0.00 41.84 3.51
2450 2481 0.172352 CACCTTCGAGAGACTGAGCC 59.828 60.000 0.00 0.00 41.84 4.70
2452 2483 1.027255 CCTTCGAGAGACTGAGCCGA 61.027 60.000 0.00 0.00 41.84 5.54
2461 2492 3.894427 AGAGACTGAGCCGACATATCATT 59.106 43.478 0.00 0.00 0.00 2.57
2464 2495 4.813161 AGACTGAGCCGACATATCATTTTG 59.187 41.667 0.00 0.00 0.00 2.44
2473 2504 9.071276 AGCCGACATATCATTTTGAGATTTTAT 57.929 29.630 0.00 0.00 0.00 1.40
2474 2505 9.121517 GCCGACATATCATTTTGAGATTTTATG 57.878 33.333 0.00 0.00 0.00 1.90
2483 2514 9.076781 TCATTTTGAGATTTTATGAAGTCACCA 57.923 29.630 0.00 0.00 0.00 4.17
2490 2521 4.875544 TTTATGAAGTCACCATAAGCGC 57.124 40.909 0.00 0.00 37.65 5.92
2525 2556 2.751166 ACATCTCCTTCCACTGAACG 57.249 50.000 0.00 0.00 0.00 3.95
2526 2557 1.971357 ACATCTCCTTCCACTGAACGT 59.029 47.619 0.00 0.00 0.00 3.99
2529 2560 1.284982 CTCCTTCCACTGAACGTGCG 61.285 60.000 0.00 0.00 42.42 5.34
2532 2563 1.876453 CTTCCACTGAACGTGCGTCG 61.876 60.000 0.00 0.00 42.42 5.12
2543 2614 3.033764 TGCGTCGCCGACTTGAAC 61.034 61.111 16.07 0.27 35.63 3.18
2544 2615 3.774702 GCGTCGCCGACTTGAACC 61.775 66.667 16.07 0.00 35.63 3.62
2548 2619 2.742372 CGCCGACTTGAACCCTGG 60.742 66.667 0.00 0.00 0.00 4.45
2553 2624 0.393077 CGACTTGAACCCTGGTGAGT 59.607 55.000 0.00 0.00 0.00 3.41
2554 2625 1.202651 CGACTTGAACCCTGGTGAGTT 60.203 52.381 0.00 0.00 0.00 3.01
2555 2626 2.222027 GACTTGAACCCTGGTGAGTTG 58.778 52.381 0.00 0.00 0.00 3.16
2557 2628 0.184933 TTGAACCCTGGTGAGTTGGG 59.815 55.000 0.00 0.00 46.07 4.12
2558 2629 1.074951 GAACCCTGGTGAGTTGGGG 59.925 63.158 0.00 0.00 44.97 4.96
2608 2679 2.158755 ACAGGTTGGTTCACCTCTTCAG 60.159 50.000 0.00 0.00 44.63 3.02
2614 2685 5.535030 GGTTGGTTCACCTCTTCAGTTAAAT 59.465 40.000 0.00 0.00 36.82 1.40
2702 2773 8.988064 TTATGTATTGTTGTTGTTGTTGTTGT 57.012 26.923 0.00 0.00 0.00 3.32
2703 2774 7.897575 ATGTATTGTTGTTGTTGTTGTTGTT 57.102 28.000 0.00 0.00 0.00 2.83
2704 2775 7.110179 TGTATTGTTGTTGTTGTTGTTGTTG 57.890 32.000 0.00 0.00 0.00 3.33
2705 2776 6.701841 TGTATTGTTGTTGTTGTTGTTGTTGT 59.298 30.769 0.00 0.00 0.00 3.32
2706 2777 6.610741 ATTGTTGTTGTTGTTGTTGTTGTT 57.389 29.167 0.00 0.00 0.00 2.83
2707 2778 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2708 2779 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2709 2780 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2710 2781 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2711 2782 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2712 2783 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2713 2784 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
2714 2785 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
2715 2786 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
2716 2787 6.128282 TGTTGTTGTTGTTGTTGTTGTTGTTT 60.128 30.769 0.00 0.00 0.00 2.83
2717 2788 6.422776 TGTTGTTGTTGTTGTTGTTGTTTT 57.577 29.167 0.00 0.00 0.00 2.43
2718 2789 6.842163 TGTTGTTGTTGTTGTTGTTGTTTTT 58.158 28.000 0.00 0.00 0.00 1.94
2719 2790 6.742718 TGTTGTTGTTGTTGTTGTTGTTTTTG 59.257 30.769 0.00 0.00 0.00 2.44
2734 2805 8.742554 TGTTGTTTTTGTTTTTGTTTTGTTGT 57.257 23.077 0.00 0.00 0.00 3.32
2742 2813 6.842163 TGTTTTTGTTTTGTTGTTTGTGTGT 58.158 28.000 0.00 0.00 0.00 3.72
2832 2903 3.416880 GGGGCCTTTCCATCCCGA 61.417 66.667 0.84 0.00 40.97 5.14
2906 2977 1.915769 GGGAGTGAGTGAGGCAGGT 60.916 63.158 0.00 0.00 0.00 4.00
2907 2978 1.484444 GGGAGTGAGTGAGGCAGGTT 61.484 60.000 0.00 0.00 0.00 3.50
2917 2988 2.504175 GTGAGGCAGGTTATAGTGGGAA 59.496 50.000 0.00 0.00 0.00 3.97
2920 2991 3.965347 GAGGCAGGTTATAGTGGGAAGTA 59.035 47.826 0.00 0.00 0.00 2.24
2921 2992 4.567857 AGGCAGGTTATAGTGGGAAGTAT 58.432 43.478 0.00 0.00 0.00 2.12
2943 3014 9.884814 AGTATCATAAACTAGTACTTCCTCCAT 57.115 33.333 0.00 0.00 0.00 3.41
2988 3064 4.768130 TTTCGTGTCAACAAAACAAGGA 57.232 36.364 0.00 0.00 0.00 3.36
2993 3069 7.731882 TCGTGTCAACAAAACAAGGATTATA 57.268 32.000 0.00 0.00 0.00 0.98
3001 3077 9.689976 CAACAAAACAAGGATTATATGTCACAA 57.310 29.630 0.00 0.00 0.00 3.33
3042 3118 5.382618 AAAGTTCTTTGAGATGTGCATCC 57.617 39.130 8.41 2.08 38.58 3.51
3105 3196 0.183492 TTTGTGACTTGGCAGCCTCT 59.817 50.000 14.15 0.00 0.00 3.69
3164 3255 1.357137 TGTGGAGGCCATGAGTGTTA 58.643 50.000 5.01 0.00 35.28 2.41
3232 3323 7.457561 TCATTTCGTCATGGGATTATATTGGA 58.542 34.615 0.00 0.00 0.00 3.53
3417 3509 7.330900 AGATGGAAGCATTGAGTATTTTCAG 57.669 36.000 0.00 0.00 0.00 3.02
3454 3546 8.757982 ATTGCAAGATATCCAAGATTAACAGT 57.242 30.769 4.94 0.00 0.00 3.55
3495 3587 4.508124 ACACGAGATTGTGAAGTTCAGTTC 59.492 41.667 5.62 3.84 42.55 3.01
3574 3666 7.347508 AGTTGTAACAGATGATTGTACGAAC 57.652 36.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.619977 GCAACCAGGAGGAGGAGACTA 60.620 57.143 0.00 0.00 44.43 2.59
2 3 1.194781 TGCAACCAGGAGGAGGAGAC 61.195 60.000 0.00 0.00 38.69 3.36
3 4 0.473694 TTGCAACCAGGAGGAGGAGA 60.474 55.000 0.00 0.00 38.69 3.71
4 5 0.401738 TTTGCAACCAGGAGGAGGAG 59.598 55.000 0.00 0.00 38.69 3.69
5 6 0.850100 TTTTGCAACCAGGAGGAGGA 59.150 50.000 0.00 0.00 38.69 3.71
6 7 1.615392 CTTTTTGCAACCAGGAGGAGG 59.385 52.381 0.00 0.00 38.69 4.30
7 8 1.615392 CCTTTTTGCAACCAGGAGGAG 59.385 52.381 15.52 0.00 38.69 3.69
8 9 1.216678 TCCTTTTTGCAACCAGGAGGA 59.783 47.619 18.24 13.90 38.69 3.71
9 10 1.341209 GTCCTTTTTGCAACCAGGAGG 59.659 52.381 21.39 13.75 36.05 4.30
10 11 2.031120 TGTCCTTTTTGCAACCAGGAG 58.969 47.619 21.39 6.43 36.05 3.69
11 12 2.151502 TGTCCTTTTTGCAACCAGGA 57.848 45.000 18.24 18.24 32.72 3.86
12 13 2.364970 TCATGTCCTTTTTGCAACCAGG 59.635 45.455 14.70 14.70 0.00 4.45
13 14 3.068590 ACTCATGTCCTTTTTGCAACCAG 59.931 43.478 0.00 0.00 0.00 4.00
14 15 3.030291 ACTCATGTCCTTTTTGCAACCA 58.970 40.909 0.00 0.00 0.00 3.67
15 16 3.068024 TGACTCATGTCCTTTTTGCAACC 59.932 43.478 0.00 0.00 42.28 3.77
16 17 4.305989 TGACTCATGTCCTTTTTGCAAC 57.694 40.909 0.00 0.00 42.28 4.17
17 18 4.583907 TCATGACTCATGTCCTTTTTGCAA 59.416 37.500 16.96 0.00 41.98 4.08
18 19 4.143543 TCATGACTCATGTCCTTTTTGCA 58.856 39.130 16.96 0.00 41.98 4.08
19 20 4.771590 TCATGACTCATGTCCTTTTTGC 57.228 40.909 16.96 0.00 41.98 3.68
20 21 5.100259 GCATCATGACTCATGTCCTTTTTG 58.900 41.667 16.96 7.42 41.98 2.44
21 22 4.142534 CGCATCATGACTCATGTCCTTTTT 60.143 41.667 16.96 0.00 41.98 1.94
22 23 3.376234 CGCATCATGACTCATGTCCTTTT 59.624 43.478 16.96 0.00 41.98 2.27
23 24 2.941064 CGCATCATGACTCATGTCCTTT 59.059 45.455 16.96 0.00 41.98 3.11
24 25 2.558378 CGCATCATGACTCATGTCCTT 58.442 47.619 16.96 1.15 41.98 3.36
25 26 1.202615 CCGCATCATGACTCATGTCCT 60.203 52.381 16.96 3.12 41.98 3.85
26 27 1.224075 CCGCATCATGACTCATGTCC 58.776 55.000 16.96 7.34 41.98 4.02
27 28 1.202568 TCCCGCATCATGACTCATGTC 60.203 52.381 16.96 8.21 41.98 3.06
28 29 0.832626 TCCCGCATCATGACTCATGT 59.167 50.000 16.96 4.13 41.98 3.21
29 30 1.202615 ACTCCCGCATCATGACTCATG 60.203 52.381 12.25 12.25 42.60 3.07
30 31 1.069823 GACTCCCGCATCATGACTCAT 59.930 52.381 0.00 0.00 0.00 2.90
31 32 0.461548 GACTCCCGCATCATGACTCA 59.538 55.000 0.00 0.00 0.00 3.41
32 33 0.249657 GGACTCCCGCATCATGACTC 60.250 60.000 0.00 0.00 0.00 3.36
33 34 0.689080 AGGACTCCCGCATCATGACT 60.689 55.000 0.00 0.00 37.58 3.41
34 35 0.249657 GAGGACTCCCGCATCATGAC 60.250 60.000 0.00 0.00 37.58 3.06
35 36 1.738346 CGAGGACTCCCGCATCATGA 61.738 60.000 0.00 0.00 37.58 3.07
36 37 1.300465 CGAGGACTCCCGCATCATG 60.300 63.158 0.00 0.00 37.58 3.07
37 38 1.739338 GACGAGGACTCCCGCATCAT 61.739 60.000 0.00 0.00 37.58 2.45
38 39 2.362503 ACGAGGACTCCCGCATCA 60.363 61.111 0.00 0.00 37.58 3.07
39 40 2.413765 GACGAGGACTCCCGCATC 59.586 66.667 0.00 0.00 37.58 3.91
40 41 3.518998 CGACGAGGACTCCCGCAT 61.519 66.667 0.00 0.00 37.58 4.73
41 42 4.710167 TCGACGAGGACTCCCGCA 62.710 66.667 0.00 0.00 37.58 5.69
42 43 3.878519 CTCGACGAGGACTCCCGC 61.879 72.222 17.27 0.00 37.58 6.13
43 44 3.878519 GCTCGACGAGGACTCCCG 61.879 72.222 25.31 0.00 37.58 5.14
44 45 2.272918 CTTGCTCGACGAGGACTCCC 62.273 65.000 25.31 8.78 27.75 4.30
45 46 1.137825 CTTGCTCGACGAGGACTCC 59.862 63.158 25.31 9.48 27.75 3.85
46 47 1.515304 GCTTGCTCGACGAGGACTC 60.515 63.158 25.31 13.14 27.75 3.36
47 48 2.569134 GCTTGCTCGACGAGGACT 59.431 61.111 25.31 0.00 27.75 3.85
48 49 1.654954 TAGGCTTGCTCGACGAGGAC 61.655 60.000 25.31 11.83 27.75 3.85
49 50 0.752009 ATAGGCTTGCTCGACGAGGA 60.752 55.000 25.31 20.86 0.00 3.71
50 51 0.318275 GATAGGCTTGCTCGACGAGG 60.318 60.000 25.31 10.75 0.00 4.63
51 52 0.665835 AGATAGGCTTGCTCGACGAG 59.334 55.000 20.56 20.56 0.00 4.18
52 53 0.382158 CAGATAGGCTTGCTCGACGA 59.618 55.000 0.00 0.00 0.00 4.20
53 54 0.382158 TCAGATAGGCTTGCTCGACG 59.618 55.000 0.00 0.00 0.00 5.12
54 55 1.846541 GTCAGATAGGCTTGCTCGAC 58.153 55.000 0.00 0.00 0.00 4.20
55 56 0.382158 CGTCAGATAGGCTTGCTCGA 59.618 55.000 0.00 0.00 0.00 4.04
56 57 0.101399 ACGTCAGATAGGCTTGCTCG 59.899 55.000 0.00 0.00 0.00 5.03
57 58 1.537135 GGACGTCAGATAGGCTTGCTC 60.537 57.143 18.91 0.00 0.00 4.26
58 59 0.461961 GGACGTCAGATAGGCTTGCT 59.538 55.000 18.91 0.00 0.00 3.91
59 60 0.872021 CGGACGTCAGATAGGCTTGC 60.872 60.000 18.91 0.00 0.00 4.01
60 61 0.249073 CCGGACGTCAGATAGGCTTG 60.249 60.000 18.91 0.00 0.00 4.01
61 62 2.017559 GCCGGACGTCAGATAGGCTT 62.018 60.000 18.91 0.00 41.21 4.35
62 63 2.491022 GCCGGACGTCAGATAGGCT 61.491 63.158 18.91 0.00 41.21 4.58
63 64 2.027751 GCCGGACGTCAGATAGGC 59.972 66.667 18.91 18.12 37.61 3.93
64 65 1.065928 GTGCCGGACGTCAGATAGG 59.934 63.158 18.91 12.60 0.00 2.57
65 66 1.065928 GGTGCCGGACGTCAGATAG 59.934 63.158 18.91 1.86 0.00 2.08
66 67 0.107066 TAGGTGCCGGACGTCAGATA 60.107 55.000 18.91 2.80 0.00 1.98
67 68 0.755698 ATAGGTGCCGGACGTCAGAT 60.756 55.000 18.91 0.00 0.00 2.90
68 69 0.968901 AATAGGTGCCGGACGTCAGA 60.969 55.000 18.91 0.00 0.00 3.27
69 70 0.806102 CAATAGGTGCCGGACGTCAG 60.806 60.000 18.91 13.87 0.00 3.51
70 71 1.216977 CAATAGGTGCCGGACGTCA 59.783 57.895 18.91 0.00 0.00 4.35
71 72 4.104143 CAATAGGTGCCGGACGTC 57.896 61.111 5.05 7.13 0.00 4.34
88 89 2.047844 TCGTGGCTTGCTCTCTGC 60.048 61.111 0.00 0.00 43.25 4.26
89 90 0.037882 TTCTCGTGGCTTGCTCTCTG 60.038 55.000 0.00 0.00 0.00 3.35
90 91 0.681733 TTTCTCGTGGCTTGCTCTCT 59.318 50.000 0.00 0.00 0.00 3.10
91 92 1.512926 TTTTCTCGTGGCTTGCTCTC 58.487 50.000 0.00 0.00 0.00 3.20
92 93 1.967319 TTTTTCTCGTGGCTTGCTCT 58.033 45.000 0.00 0.00 0.00 4.09
108 109 1.226831 CCGTTGCAGTGCCGTTTTT 60.227 52.632 13.72 0.00 0.00 1.94
109 110 2.058829 CTCCGTTGCAGTGCCGTTTT 62.059 55.000 13.72 0.00 0.00 2.43
110 111 2.515057 TCCGTTGCAGTGCCGTTT 60.515 55.556 13.72 0.00 0.00 3.60
111 112 2.972505 CTCCGTTGCAGTGCCGTT 60.973 61.111 13.72 0.00 0.00 4.44
116 117 2.281761 AAGGGCTCCGTTGCAGTG 60.282 61.111 0.00 0.00 34.04 3.66
117 118 2.129555 ATCAAGGGCTCCGTTGCAGT 62.130 55.000 14.56 3.23 40.38 4.40
118 119 0.962356 AATCAAGGGCTCCGTTGCAG 60.962 55.000 14.56 0.00 40.38 4.41
119 120 0.539438 AAATCAAGGGCTCCGTTGCA 60.539 50.000 14.56 6.31 40.38 4.08
120 121 0.171231 GAAATCAAGGGCTCCGTTGC 59.829 55.000 14.56 0.18 40.38 4.17
121 122 0.811281 GGAAATCAAGGGCTCCGTTG 59.189 55.000 13.51 13.51 41.49 4.10
122 123 0.404040 TGGAAATCAAGGGCTCCGTT 59.596 50.000 0.00 0.00 0.00 4.44
123 124 0.322546 GTGGAAATCAAGGGCTCCGT 60.323 55.000 0.00 0.00 0.00 4.69
124 125 1.369091 CGTGGAAATCAAGGGCTCCG 61.369 60.000 0.00 0.00 0.00 4.63
125 126 0.035439 TCGTGGAAATCAAGGGCTCC 60.035 55.000 0.00 0.00 0.00 4.70
126 127 1.066143 TCTCGTGGAAATCAAGGGCTC 60.066 52.381 0.00 0.00 0.00 4.70
127 128 0.984230 TCTCGTGGAAATCAAGGGCT 59.016 50.000 0.00 0.00 0.00 5.19
128 129 1.740025 CTTCTCGTGGAAATCAAGGGC 59.260 52.381 0.00 0.00 33.07 5.19
129 130 3.003480 GACTTCTCGTGGAAATCAAGGG 58.997 50.000 0.00 0.00 31.33 3.95
130 131 3.003480 GGACTTCTCGTGGAAATCAAGG 58.997 50.000 5.22 0.00 32.46 3.61
131 132 2.668457 CGGACTTCTCGTGGAAATCAAG 59.332 50.000 5.22 0.00 32.46 3.02
132 133 2.683968 CGGACTTCTCGTGGAAATCAA 58.316 47.619 5.22 0.00 32.46 2.57
133 134 1.671850 GCGGACTTCTCGTGGAAATCA 60.672 52.381 5.22 0.00 32.46 2.57
134 135 1.000145 GCGGACTTCTCGTGGAAATC 59.000 55.000 0.00 0.00 33.07 2.17
135 136 0.391263 GGCGGACTTCTCGTGGAAAT 60.391 55.000 0.00 0.00 33.07 2.17
136 137 1.005394 GGCGGACTTCTCGTGGAAA 60.005 57.895 0.00 0.00 33.07 3.13
137 138 2.654877 GGCGGACTTCTCGTGGAA 59.345 61.111 0.00 0.00 0.00 3.53
138 139 3.744719 CGGCGGACTTCTCGTGGA 61.745 66.667 0.00 0.00 0.00 4.02
139 140 4.052229 ACGGCGGACTTCTCGTGG 62.052 66.667 13.24 0.00 34.40 4.94
140 141 2.805353 CACGGCGGACTTCTCGTG 60.805 66.667 13.24 0.00 44.98 4.35
141 142 4.052229 CCACGGCGGACTTCTCGT 62.052 66.667 13.24 0.00 36.56 4.18
142 143 4.796231 CCCACGGCGGACTTCTCG 62.796 72.222 13.24 0.00 36.56 4.04
155 156 2.509336 CTGGACGATCGTGCCCAC 60.509 66.667 32.61 15.43 35.53 4.61
156 157 4.451150 GCTGGACGATCGTGCCCA 62.451 66.667 32.61 27.45 35.53 5.36
162 163 4.812476 TTGCGGGCTGGACGATCG 62.812 66.667 14.88 14.88 0.00 3.69
163 164 1.376609 AATTTGCGGGCTGGACGATC 61.377 55.000 0.00 0.00 0.00 3.69
164 165 0.965363 AAATTTGCGGGCTGGACGAT 60.965 50.000 0.00 0.00 0.00 3.73
165 166 1.582610 GAAATTTGCGGGCTGGACGA 61.583 55.000 0.00 0.00 0.00 4.20
166 167 1.154035 GAAATTTGCGGGCTGGACG 60.154 57.895 0.00 0.00 0.00 4.79
167 168 1.154035 CGAAATTTGCGGGCTGGAC 60.154 57.895 0.00 0.00 0.00 4.02
168 169 2.339556 CCGAAATTTGCGGGCTGGA 61.340 57.895 8.03 0.00 44.87 3.86
169 170 2.181525 CCGAAATTTGCGGGCTGG 59.818 61.111 8.03 0.00 44.87 4.85
175 176 1.518102 GCATATGCACCGAAATTTGCG 59.482 47.619 22.84 0.00 41.96 4.85
176 177 1.860326 GGCATATGCACCGAAATTTGC 59.140 47.619 28.07 3.35 44.36 3.68
185 186 1.005037 TCCGATCGGCATATGCACC 60.005 57.895 29.62 11.62 44.36 5.01
186 187 0.319900 AGTCCGATCGGCATATGCAC 60.320 55.000 29.62 19.36 44.36 4.57
187 188 0.319813 CAGTCCGATCGGCATATGCA 60.320 55.000 29.62 10.14 44.36 3.96
188 189 0.038251 TCAGTCCGATCGGCATATGC 60.038 55.000 29.62 19.79 41.14 3.14
189 190 1.541588 TCTCAGTCCGATCGGCATATG 59.458 52.381 29.62 21.87 34.68 1.78
190 191 1.911057 TCTCAGTCCGATCGGCATAT 58.089 50.000 29.62 11.58 34.68 1.78
191 192 1.337071 GTTCTCAGTCCGATCGGCATA 59.663 52.381 29.62 9.88 34.68 3.14
192 193 0.103208 GTTCTCAGTCCGATCGGCAT 59.897 55.000 29.62 16.86 34.68 4.40
193 194 0.965866 AGTTCTCAGTCCGATCGGCA 60.966 55.000 29.62 15.30 34.68 5.69
194 195 0.248702 GAGTTCTCAGTCCGATCGGC 60.249 60.000 29.62 22.76 34.68 5.54
195 196 1.095600 TGAGTTCTCAGTCCGATCGG 58.904 55.000 28.62 28.62 0.00 4.18
196 197 1.202200 GGTGAGTTCTCAGTCCGATCG 60.202 57.143 8.51 8.51 0.00 3.69
197 198 1.202200 CGGTGAGTTCTCAGTCCGATC 60.202 57.143 19.96 2.19 40.29 3.69
198 199 0.811915 CGGTGAGTTCTCAGTCCGAT 59.188 55.000 19.96 0.00 40.29 4.18
199 200 1.863662 GCGGTGAGTTCTCAGTCCGA 61.864 60.000 25.33 0.00 40.29 4.55
200 201 1.444553 GCGGTGAGTTCTCAGTCCG 60.445 63.158 20.18 20.18 40.72 4.79
201 202 1.079750 GGCGGTGAGTTCTCAGTCC 60.080 63.158 2.53 1.65 0.00 3.85
202 203 0.109039 GAGGCGGTGAGTTCTCAGTC 60.109 60.000 2.53 0.00 0.00 3.51
203 204 1.867919 CGAGGCGGTGAGTTCTCAGT 61.868 60.000 2.53 0.00 0.00 3.41
204 205 1.153939 CGAGGCGGTGAGTTCTCAG 60.154 63.158 2.53 0.00 0.00 3.35
205 206 2.962569 CGAGGCGGTGAGTTCTCA 59.037 61.111 0.00 0.00 0.00 3.27
206 207 2.507324 GCGAGGCGGTGAGTTCTC 60.507 66.667 0.00 0.00 0.00 2.87
207 208 2.992114 AGCGAGGCGGTGAGTTCT 60.992 61.111 0.00 0.00 35.85 3.01
208 209 2.507324 GAGCGAGGCGGTGAGTTC 60.507 66.667 0.00 0.00 37.83 3.01
209 210 4.070552 GGAGCGAGGCGGTGAGTT 62.071 66.667 0.00 0.00 37.83 3.01
218 219 2.765807 ATGGTCCTGGGAGCGAGG 60.766 66.667 13.16 0.00 44.68 4.63
219 220 1.760086 AGATGGTCCTGGGAGCGAG 60.760 63.158 13.16 0.00 44.68 5.03
220 221 2.060383 CAGATGGTCCTGGGAGCGA 61.060 63.158 13.16 4.40 44.68 4.93
221 222 1.617018 TTCAGATGGTCCTGGGAGCG 61.617 60.000 13.16 0.73 44.68 5.03
222 223 0.107459 GTTCAGATGGTCCTGGGAGC 60.107 60.000 11.43 11.43 42.37 4.70
223 224 1.065854 GTGTTCAGATGGTCCTGGGAG 60.066 57.143 0.00 0.00 34.99 4.30
224 225 0.984230 GTGTTCAGATGGTCCTGGGA 59.016 55.000 0.00 0.00 34.99 4.37
225 226 0.692476 TGTGTTCAGATGGTCCTGGG 59.308 55.000 0.00 0.00 34.99 4.45
226 227 2.636830 GATGTGTTCAGATGGTCCTGG 58.363 52.381 0.00 0.00 34.99 4.45
227 228 2.636830 GGATGTGTTCAGATGGTCCTG 58.363 52.381 0.00 0.00 35.55 3.86
228 229 1.208052 CGGATGTGTTCAGATGGTCCT 59.792 52.381 0.00 0.00 0.00 3.85
229 230 1.656652 CGGATGTGTTCAGATGGTCC 58.343 55.000 0.00 0.00 0.00 4.46
230 231 1.656652 CCGGATGTGTTCAGATGGTC 58.343 55.000 0.00 0.00 0.00 4.02
231 232 0.392998 GCCGGATGTGTTCAGATGGT 60.393 55.000 5.05 0.00 0.00 3.55
232 233 0.392863 TGCCGGATGTGTTCAGATGG 60.393 55.000 5.05 0.00 0.00 3.51
233 234 1.332686 CATGCCGGATGTGTTCAGATG 59.667 52.381 5.05 0.00 0.00 2.90
234 235 1.065199 ACATGCCGGATGTGTTCAGAT 60.065 47.619 5.05 0.00 44.12 2.90
235 236 0.324614 ACATGCCGGATGTGTTCAGA 59.675 50.000 5.05 0.00 44.12 3.27
236 237 0.729116 GACATGCCGGATGTGTTCAG 59.271 55.000 19.88 0.00 45.90 3.02
237 238 0.676466 GGACATGCCGGATGTGTTCA 60.676 55.000 19.88 1.48 45.90 3.18
238 239 0.392998 AGGACATGCCGGATGTGTTC 60.393 55.000 19.88 12.72 45.90 3.18
239 240 0.392998 GAGGACATGCCGGATGTGTT 60.393 55.000 19.88 10.36 45.90 3.32
240 241 1.221840 GAGGACATGCCGGATGTGT 59.778 57.895 19.88 13.79 45.90 3.72
241 242 1.524621 GGAGGACATGCCGGATGTG 60.525 63.158 19.88 10.98 45.90 3.21
243 244 1.227764 CAGGAGGACATGCCGGATG 60.228 63.158 5.05 9.09 43.43 3.51
244 245 0.398522 TACAGGAGGACATGCCGGAT 60.399 55.000 5.05 0.00 43.43 4.18
245 246 0.616395 TTACAGGAGGACATGCCGGA 60.616 55.000 5.05 0.00 43.43 5.14
246 247 0.462047 GTTACAGGAGGACATGCCGG 60.462 60.000 0.00 0.00 43.43 6.13
247 248 0.806102 CGTTACAGGAGGACATGCCG 60.806 60.000 0.00 0.00 43.43 5.69
248 249 0.249398 ACGTTACAGGAGGACATGCC 59.751 55.000 0.00 0.00 0.00 4.40
249 250 1.067142 TCACGTTACAGGAGGACATGC 60.067 52.381 0.00 0.00 0.00 4.06
250 251 3.131223 AGATCACGTTACAGGAGGACATG 59.869 47.826 0.00 0.00 0.00 3.21
251 252 3.366396 AGATCACGTTACAGGAGGACAT 58.634 45.455 0.00 0.00 0.00 3.06
252 253 2.753452 GAGATCACGTTACAGGAGGACA 59.247 50.000 0.00 0.00 0.00 4.02
253 254 2.753452 TGAGATCACGTTACAGGAGGAC 59.247 50.000 0.00 0.00 0.00 3.85
254 255 2.753452 GTGAGATCACGTTACAGGAGGA 59.247 50.000 0.00 0.00 37.10 3.71
255 256 3.152261 GTGAGATCACGTTACAGGAGG 57.848 52.381 0.00 0.00 37.10 4.30
266 267 3.129462 TGGACGAGAATCAGTGAGATCAC 59.871 47.826 4.77 4.77 46.77 3.06
267 268 3.356290 TGGACGAGAATCAGTGAGATCA 58.644 45.455 10.40 0.00 35.39 2.92
268 269 3.629855 TCTGGACGAGAATCAGTGAGATC 59.370 47.826 0.00 0.00 35.39 2.75
269 270 3.625853 TCTGGACGAGAATCAGTGAGAT 58.374 45.455 0.00 0.00 39.09 2.75
270 271 3.013219 CTCTGGACGAGAATCAGTGAGA 58.987 50.000 0.00 0.00 42.62 3.27
271 272 2.098934 CCTCTGGACGAGAATCAGTGAG 59.901 54.545 0.00 0.00 42.62 3.51
272 273 2.095461 CCTCTGGACGAGAATCAGTGA 58.905 52.381 0.00 0.00 42.62 3.41
273 274 1.470632 GCCTCTGGACGAGAATCAGTG 60.471 57.143 0.00 0.00 42.62 3.66
274 275 0.820871 GCCTCTGGACGAGAATCAGT 59.179 55.000 0.00 0.00 42.62 3.41
275 276 1.110442 AGCCTCTGGACGAGAATCAG 58.890 55.000 0.00 0.00 42.62 2.90
276 277 0.820226 CAGCCTCTGGACGAGAATCA 59.180 55.000 0.00 0.00 42.62 2.57
277 278 1.066908 CTCAGCCTCTGGACGAGAATC 59.933 57.143 0.00 0.00 42.62 2.52
278 279 1.110442 CTCAGCCTCTGGACGAGAAT 58.890 55.000 0.00 0.00 42.62 2.40
279 280 0.967887 CCTCAGCCTCTGGACGAGAA 60.968 60.000 0.00 0.00 42.62 2.87
280 281 1.379176 CCTCAGCCTCTGGACGAGA 60.379 63.158 0.00 0.00 42.62 4.04
281 282 0.394488 TACCTCAGCCTCTGGACGAG 60.394 60.000 0.00 0.00 39.57 4.18
282 283 0.680280 GTACCTCAGCCTCTGGACGA 60.680 60.000 0.00 0.00 31.51 4.20
283 284 0.681564 AGTACCTCAGCCTCTGGACG 60.682 60.000 0.00 0.00 31.51 4.79
284 285 1.107945 GAGTACCTCAGCCTCTGGAC 58.892 60.000 0.00 0.00 31.51 4.02
285 286 0.033011 GGAGTACCTCAGCCTCTGGA 60.033 60.000 0.00 0.00 31.08 3.86
286 287 1.045911 GGGAGTACCTCAGCCTCTGG 61.046 65.000 0.00 0.00 35.85 3.86
287 288 2.510664 GGGAGTACCTCAGCCTCTG 58.489 63.158 0.00 0.00 35.85 3.35
297 298 4.772886 ATTGACACCATAAGGGAGTACC 57.227 45.455 0.00 0.00 40.90 3.34
298 299 5.944007 ACAAATTGACACCATAAGGGAGTAC 59.056 40.000 0.00 0.00 40.90 2.73
299 300 6.134535 ACAAATTGACACCATAAGGGAGTA 57.865 37.500 0.00 0.00 40.90 2.59
300 301 4.998051 ACAAATTGACACCATAAGGGAGT 58.002 39.130 0.00 0.00 43.78 3.85
301 302 6.414732 TCTACAAATTGACACCATAAGGGAG 58.585 40.000 0.00 0.00 41.15 4.30
302 303 6.381498 TCTACAAATTGACACCATAAGGGA 57.619 37.500 0.00 0.00 41.15 4.20
303 304 6.828273 TGATCTACAAATTGACACCATAAGGG 59.172 38.462 0.00 0.00 44.81 3.95
304 305 7.012704 CCTGATCTACAAATTGACACCATAAGG 59.987 40.741 0.00 0.00 42.21 2.69
305 306 7.554118 ACCTGATCTACAAATTGACACCATAAG 59.446 37.037 0.00 0.00 0.00 1.73
306 307 7.402054 ACCTGATCTACAAATTGACACCATAA 58.598 34.615 0.00 0.00 0.00 1.90
307 308 6.957631 ACCTGATCTACAAATTGACACCATA 58.042 36.000 0.00 0.00 0.00 2.74
308 309 5.819991 ACCTGATCTACAAATTGACACCAT 58.180 37.500 0.00 0.00 0.00 3.55
309 310 5.241403 ACCTGATCTACAAATTGACACCA 57.759 39.130 0.00 0.00 0.00 4.17
310 311 4.636206 GGACCTGATCTACAAATTGACACC 59.364 45.833 0.00 0.00 0.00 4.16
311 312 5.491982 AGGACCTGATCTACAAATTGACAC 58.508 41.667 0.00 0.00 0.00 3.67
312 313 5.762179 AGGACCTGATCTACAAATTGACA 57.238 39.130 0.00 0.00 0.00 3.58
313 314 7.113658 TCTAGGACCTGATCTACAAATTGAC 57.886 40.000 3.53 0.00 0.00 3.18
314 315 7.786943 AGATCTAGGACCTGATCTACAAATTGA 59.213 37.037 23.86 0.00 45.09 2.57
315 316 7.961351 AGATCTAGGACCTGATCTACAAATTG 58.039 38.462 23.86 0.00 45.09 2.32
316 317 8.010105 AGAGATCTAGGACCTGATCTACAAATT 58.990 37.037 24.58 10.57 46.37 1.82
317 318 7.534852 AGAGATCTAGGACCTGATCTACAAAT 58.465 38.462 24.58 11.06 46.37 2.32
318 319 6.916909 AGAGATCTAGGACCTGATCTACAAA 58.083 40.000 24.58 0.00 46.37 2.83
319 320 6.523035 AGAGATCTAGGACCTGATCTACAA 57.477 41.667 24.58 0.00 46.37 2.41
320 321 6.303054 CAAGAGATCTAGGACCTGATCTACA 58.697 44.000 24.58 0.00 46.37 2.74
321 322 5.183140 GCAAGAGATCTAGGACCTGATCTAC 59.817 48.000 24.58 19.63 46.37 2.59
322 323 5.321102 GCAAGAGATCTAGGACCTGATCTA 58.679 45.833 24.58 0.00 46.37 1.98
324 325 3.258123 GGCAAGAGATCTAGGACCTGATC 59.742 52.174 18.78 18.78 39.32 2.92
325 326 3.238597 GGCAAGAGATCTAGGACCTGAT 58.761 50.000 3.53 5.21 0.00 2.90
326 327 2.672098 GGCAAGAGATCTAGGACCTGA 58.328 52.381 3.53 0.00 0.00 3.86
327 328 1.691434 GGGCAAGAGATCTAGGACCTG 59.309 57.143 3.53 0.00 0.00 4.00
328 329 1.292242 TGGGCAAGAGATCTAGGACCT 59.708 52.381 12.47 0.00 31.76 3.85
329 330 1.794714 TGGGCAAGAGATCTAGGACC 58.205 55.000 0.00 0.00 0.00 4.46
330 331 2.549778 GCATGGGCAAGAGATCTAGGAC 60.550 54.545 0.00 0.00 40.72 3.85
331 332 1.696336 GCATGGGCAAGAGATCTAGGA 59.304 52.381 0.00 0.00 40.72 2.94
332 333 2.181954 GCATGGGCAAGAGATCTAGG 57.818 55.000 0.00 0.00 40.72 3.02
344 345 2.908940 CGAGGGGAATGCATGGGC 60.909 66.667 0.00 0.00 41.68 5.36
345 346 1.228063 CTCGAGGGGAATGCATGGG 60.228 63.158 3.91 0.00 0.00 4.00
346 347 0.250209 CTCTCGAGGGGAATGCATGG 60.250 60.000 13.56 0.00 0.00 3.66
347 348 0.883814 GCTCTCGAGGGGAATGCATG 60.884 60.000 15.59 0.00 0.00 4.06
348 349 1.449353 GCTCTCGAGGGGAATGCAT 59.551 57.895 15.59 0.00 0.00 3.96
349 350 2.735772 GGCTCTCGAGGGGAATGCA 61.736 63.158 15.59 0.00 0.00 3.96
350 351 2.110006 GGCTCTCGAGGGGAATGC 59.890 66.667 15.59 8.40 0.00 3.56
351 352 2.127869 TCGGCTCTCGAGGGGAATG 61.128 63.158 15.59 0.00 43.74 2.67
352 353 2.279073 TCGGCTCTCGAGGGGAAT 59.721 61.111 15.59 0.00 43.74 3.01
382 383 4.554363 CCTAGGCTGCGACGGACG 62.554 72.222 0.00 0.00 45.66 4.79
383 384 4.874977 GCCTAGGCTGCGACGGAC 62.875 72.222 27.17 0.00 38.26 4.79
390 391 4.228567 GAGTCCCGCCTAGGCTGC 62.229 72.222 30.55 17.02 39.21 5.25
391 392 3.541713 GGAGTCCCGCCTAGGCTG 61.542 72.222 30.55 24.22 39.21 4.85
392 393 4.075793 TGGAGTCCCGCCTAGGCT 62.076 66.667 30.55 12.47 39.21 4.58
393 394 3.541713 CTGGAGTCCCGCCTAGGC 61.542 72.222 24.75 24.75 39.21 3.93
394 395 3.541713 GCTGGAGTCCCGCCTAGG 61.542 72.222 14.32 3.67 40.63 3.02
395 396 2.136878 ATGCTGGAGTCCCGCCTAG 61.137 63.158 21.40 6.13 33.21 3.02
396 397 2.041922 ATGCTGGAGTCCCGCCTA 60.042 61.111 21.40 5.63 33.21 3.93
397 398 3.790437 CATGCTGGAGTCCCGCCT 61.790 66.667 21.40 10.17 33.21 5.52
399 400 4.783621 TGCATGCTGGAGTCCCGC 62.784 66.667 20.33 18.02 34.29 6.13
400 401 2.821366 GTGCATGCTGGAGTCCCG 60.821 66.667 20.33 0.39 34.29 5.14
401 402 1.748122 CAGTGCATGCTGGAGTCCC 60.748 63.158 20.33 0.00 33.11 4.46
402 403 0.250234 TACAGTGCATGCTGGAGTCC 59.750 55.000 20.33 0.73 40.59 3.85
403 404 2.005451 CTTACAGTGCATGCTGGAGTC 58.995 52.381 20.33 2.70 40.59 3.36
404 405 1.625315 TCTTACAGTGCATGCTGGAGT 59.375 47.619 20.33 14.03 40.59 3.85
405 406 2.391616 TCTTACAGTGCATGCTGGAG 57.608 50.000 20.33 11.77 40.59 3.86
406 407 2.857186 TTCTTACAGTGCATGCTGGA 57.143 45.000 20.33 3.03 40.59 3.86
407 408 2.098607 CCATTCTTACAGTGCATGCTGG 59.901 50.000 20.33 10.01 40.59 4.85
408 409 2.751259 ACCATTCTTACAGTGCATGCTG 59.249 45.455 20.33 12.41 41.92 4.41
409 410 3.077484 ACCATTCTTACAGTGCATGCT 57.923 42.857 20.33 0.00 0.00 3.79
410 411 4.576053 TGATACCATTCTTACAGTGCATGC 59.424 41.667 11.82 11.82 0.00 4.06
411 412 6.682423 TTGATACCATTCTTACAGTGCATG 57.318 37.500 0.00 0.00 0.00 4.06
412 413 6.886459 AGTTTGATACCATTCTTACAGTGCAT 59.114 34.615 0.00 0.00 0.00 3.96
413 414 6.237901 AGTTTGATACCATTCTTACAGTGCA 58.762 36.000 0.00 0.00 0.00 4.57
414 415 6.743575 AGTTTGATACCATTCTTACAGTGC 57.256 37.500 0.00 0.00 0.00 4.40
415 416 8.322906 TGAAGTTTGATACCATTCTTACAGTG 57.677 34.615 0.00 0.00 0.00 3.66
416 417 8.918202 TTGAAGTTTGATACCATTCTTACAGT 57.082 30.769 0.00 0.00 0.00 3.55
441 442 6.755141 GCTGATGCACACAATCATCTTTATTT 59.245 34.615 0.00 0.00 39.69 1.40
442 443 6.270815 GCTGATGCACACAATCATCTTTATT 58.729 36.000 0.00 0.00 39.69 1.40
456 457 1.668793 CTGTGTCGGCTGATGCACA 60.669 57.895 15.85 15.85 41.91 4.57
461 462 1.078848 GGCTTCTGTGTCGGCTGAT 60.079 57.895 0.00 0.00 0.00 2.90
462 463 2.343758 GGCTTCTGTGTCGGCTGA 59.656 61.111 0.00 0.00 0.00 4.26
468 469 2.003301 GAAGAATCGGGCTTCTGTGTC 58.997 52.381 0.00 0.00 38.89 3.67
471 472 1.339151 GGTGAAGAATCGGGCTTCTGT 60.339 52.381 0.00 0.00 41.71 3.41
472 473 1.065854 AGGTGAAGAATCGGGCTTCTG 60.066 52.381 0.00 0.00 41.71 3.02
476 477 2.224769 TGAAAAGGTGAAGAATCGGGCT 60.225 45.455 0.00 0.00 0.00 5.19
496 497 9.670180 GTTTTCGAACATAAGTTTTTCTTTGTG 57.330 29.630 0.00 0.00 38.30 3.33
497 498 9.413048 TGTTTTCGAACATAAGTTTTTCTTTGT 57.587 25.926 0.00 0.00 38.30 2.83
498 499 9.885743 CTGTTTTCGAACATAAGTTTTTCTTTG 57.114 29.630 0.00 0.00 38.30 2.77
525 526 8.372459 AGCCGGTATATGACAGTATTCATTTAA 58.628 33.333 1.90 0.00 37.42 1.52
532 533 4.077108 TCGAGCCGGTATATGACAGTATT 58.923 43.478 1.90 0.00 0.00 1.89
540 541 6.371825 TGATAGCTATATCGAGCCGGTATATG 59.628 42.308 6.13 4.92 43.97 1.78
541 542 6.473758 TGATAGCTATATCGAGCCGGTATAT 58.526 40.000 6.13 4.79 43.97 0.86
542 543 5.861727 TGATAGCTATATCGAGCCGGTATA 58.138 41.667 6.13 7.18 43.97 1.47
621 622 7.819644 TCCATTCCATCATATTTTCATTAGCG 58.180 34.615 0.00 0.00 0.00 4.26
634 635 7.240405 TCCAGAAGGTATATTCCATTCCATCAT 59.760 37.037 0.78 0.00 35.89 2.45
640 641 8.954350 CATTCATCCAGAAGGTATATTCCATTC 58.046 37.037 0.78 2.63 40.15 2.67
771 772 9.527157 TTCCAAGGTTGATTTATTAAGATGTGA 57.473 29.630 0.00 0.00 0.00 3.58
863 864 9.646427 GACATTACTCTTTCTTGTCTCTATGTT 57.354 33.333 0.00 0.00 35.09 2.71
864 865 8.807118 TGACATTACTCTTTCTTGTCTCTATGT 58.193 33.333 0.00 0.00 38.00 2.29
865 866 9.645059 TTGACATTACTCTTTCTTGTCTCTATG 57.355 33.333 0.00 0.00 38.00 2.23
866 867 9.646427 GTTGACATTACTCTTTCTTGTCTCTAT 57.354 33.333 0.00 0.00 38.00 1.98
867 868 8.638873 TGTTGACATTACTCTTTCTTGTCTCTA 58.361 33.333 0.00 0.00 38.00 2.43
868 869 7.500992 TGTTGACATTACTCTTTCTTGTCTCT 58.499 34.615 0.00 0.00 38.00 3.10
869 870 7.715265 TGTTGACATTACTCTTTCTTGTCTC 57.285 36.000 0.00 0.00 38.00 3.36
916 919 6.704937 CGAGGGGTATTCCTTTTATTGTACTC 59.295 42.308 0.00 0.00 37.25 2.59
919 922 5.370679 GCGAGGGGTATTCCTTTTATTGTA 58.629 41.667 0.00 0.00 37.25 2.41
921 924 3.568430 GGCGAGGGGTATTCCTTTTATTG 59.432 47.826 0.00 0.00 37.25 1.90
922 925 3.436035 GGGCGAGGGGTATTCCTTTTATT 60.436 47.826 0.00 0.00 37.25 1.40
923 926 2.107726 GGGCGAGGGGTATTCCTTTTAT 59.892 50.000 0.00 0.00 37.25 1.40
924 927 1.491754 GGGCGAGGGGTATTCCTTTTA 59.508 52.381 0.00 0.00 37.25 1.52
968 976 9.895138 CCAAGGGTTAGTTAGTTAGCTAAATAA 57.105 33.333 19.53 19.53 42.08 1.40
969 977 9.270707 TCCAAGGGTTAGTTAGTTAGCTAAATA 57.729 33.333 7.99 8.82 38.74 1.40
970 978 8.154420 TCCAAGGGTTAGTTAGTTAGCTAAAT 57.846 34.615 11.66 11.66 38.74 1.40
971 979 7.557875 TCCAAGGGTTAGTTAGTTAGCTAAA 57.442 36.000 7.99 0.00 38.74 1.85
972 980 7.557875 TTCCAAGGGTTAGTTAGTTAGCTAA 57.442 36.000 0.86 0.86 35.04 3.09
973 981 7.236225 AGTTTCCAAGGGTTAGTTAGTTAGCTA 59.764 37.037 0.00 0.00 0.00 3.32
974 982 6.044054 AGTTTCCAAGGGTTAGTTAGTTAGCT 59.956 38.462 0.00 0.00 0.00 3.32
975 983 6.236409 AGTTTCCAAGGGTTAGTTAGTTAGC 58.764 40.000 0.00 0.00 0.00 3.09
976 984 7.677892 AGAGTTTCCAAGGGTTAGTTAGTTAG 58.322 38.462 0.00 0.00 0.00 2.34
977 985 7.622502 AGAGTTTCCAAGGGTTAGTTAGTTA 57.377 36.000 0.00 0.00 0.00 2.24
1051 1059 0.586319 GCGTGTAGTTTCTTGCAGCA 59.414 50.000 0.00 0.00 0.00 4.41
1052 1060 0.586319 TGCGTGTAGTTTCTTGCAGC 59.414 50.000 0.00 0.00 0.00 5.25
1054 1062 1.329292 GTGTGCGTGTAGTTTCTTGCA 59.671 47.619 0.00 0.00 0.00 4.08
1055 1063 1.656429 CGTGTGCGTGTAGTTTCTTGC 60.656 52.381 0.00 0.00 0.00 4.01
1056 1064 2.279250 CGTGTGCGTGTAGTTTCTTG 57.721 50.000 0.00 0.00 0.00 3.02
1084 1092 3.834813 AGTGTCTGCCATTCTCTAGTGAA 59.165 43.478 9.53 9.53 0.00 3.18
1108 1116 1.808945 CCACTAGTTTCTTGCAGCAGG 59.191 52.381 0.00 0.00 0.00 4.85
1216 1224 1.153726 ACATCGTACGGCGCAATGA 60.154 52.632 16.52 7.05 41.07 2.57
1448 1456 2.941583 GGAGCAAGGGGGAGGGTT 60.942 66.667 0.00 0.00 0.00 4.11
1598 1606 2.943653 CGTGAAAAGTCGGCCACC 59.056 61.111 2.24 0.00 0.00 4.61
1616 1624 3.068165 TGCTATCACCTATCAGGAACACG 59.932 47.826 0.00 0.00 37.67 4.49
1991 1999 3.706373 ACATCCTTCCCAGCGCGT 61.706 61.111 8.43 0.00 0.00 6.01
2093 2101 1.953138 GATGAGCTCCGCGATGTGG 60.953 63.158 8.23 0.00 33.99 4.17
2095 2103 2.026734 CGATGAGCTCCGCGATGT 59.973 61.111 17.37 0.00 0.00 3.06
2102 2110 1.005156 GATGGCCTCGATGAGCTCC 60.005 63.158 12.15 0.00 0.00 4.70
2141 2149 4.700365 CGAGCGACACAGCCGTGA 62.700 66.667 7.16 0.00 46.80 4.35
2190 2210 7.273320 AGATGCATATGATTCAGAAAACCAG 57.727 36.000 6.97 0.00 0.00 4.00
2193 2213 7.972277 ACACAAGATGCATATGATTCAGAAAAC 59.028 33.333 16.55 0.00 0.00 2.43
2195 2215 7.415877 CCACACAAGATGCATATGATTCAGAAA 60.416 37.037 16.55 0.00 0.00 2.52
2233 2253 5.816777 CACTCACAATTCACAAAACCCATTT 59.183 36.000 0.00 0.00 0.00 2.32
2341 2366 7.232300 GCTTCCGTCTGTACTATGTTAAAAAC 58.768 38.462 0.00 0.00 0.00 2.43
2347 2372 2.734492 GCGCTTCCGTCTGTACTATGTT 60.734 50.000 0.00 0.00 36.67 2.71
2349 2374 1.065701 AGCGCTTCCGTCTGTACTATG 59.934 52.381 2.64 0.00 36.67 2.23
2350 2375 1.334243 GAGCGCTTCCGTCTGTACTAT 59.666 52.381 13.26 0.00 36.67 2.12
2351 2376 0.731417 GAGCGCTTCCGTCTGTACTA 59.269 55.000 13.26 0.00 36.67 1.82
2352 2377 1.241990 TGAGCGCTTCCGTCTGTACT 61.242 55.000 13.26 0.00 36.67 2.73
2353 2378 0.179134 ATGAGCGCTTCCGTCTGTAC 60.179 55.000 13.26 0.00 36.67 2.90
2354 2379 1.385528 TATGAGCGCTTCCGTCTGTA 58.614 50.000 13.26 0.00 36.67 2.74
2356 2381 2.287608 TGTATATGAGCGCTTCCGTCTG 60.288 50.000 13.26 0.00 36.67 3.51
2357 2382 1.954382 TGTATATGAGCGCTTCCGTCT 59.046 47.619 13.26 0.00 36.67 4.18
2358 2383 2.052157 GTGTATATGAGCGCTTCCGTC 58.948 52.381 13.26 0.00 36.67 4.79
2361 2386 1.787155 CACGTGTATATGAGCGCTTCC 59.213 52.381 13.26 0.00 0.00 3.46
2362 2387 1.190323 GCACGTGTATATGAGCGCTTC 59.810 52.381 13.26 5.55 0.00 3.86
2364 2389 0.102300 TGCACGTGTATATGAGCGCT 59.898 50.000 11.27 11.27 32.85 5.92
2365 2390 1.139989 ATGCACGTGTATATGAGCGC 58.860 50.000 18.03 0.00 32.85 5.92
2385 2414 3.649023 TGTGTGTTCATAGGGGTAAGTGT 59.351 43.478 0.00 0.00 0.00 3.55
2390 2419 3.621214 GCATGTGTGTGTTCATAGGGGTA 60.621 47.826 0.00 0.00 0.00 3.69
2392 2421 1.745087 GCATGTGTGTGTTCATAGGGG 59.255 52.381 0.00 0.00 0.00 4.79
2393 2422 1.398041 CGCATGTGTGTGTTCATAGGG 59.602 52.381 0.00 0.00 0.00 3.53
2405 2434 2.168496 AGAGGTAGTGTACGCATGTGT 58.832 47.619 17.35 17.35 0.00 3.72
2406 2435 2.941453 AGAGGTAGTGTACGCATGTG 57.059 50.000 9.48 4.30 0.00 3.21
2407 2436 4.204799 TCATAGAGGTAGTGTACGCATGT 58.795 43.478 9.48 0.00 0.00 3.21
2409 2438 3.253677 GCTCATAGAGGTAGTGTACGCAT 59.746 47.826 9.48 0.00 0.00 4.73
2410 2439 2.617308 GCTCATAGAGGTAGTGTACGCA 59.383 50.000 9.48 0.00 0.00 5.24
2411 2440 2.617308 TGCTCATAGAGGTAGTGTACGC 59.383 50.000 0.00 0.00 0.00 4.42
2413 2442 4.208746 AGGTGCTCATAGAGGTAGTGTAC 58.791 47.826 0.00 0.00 0.00 2.90
2418 2447 3.215151 TCGAAGGTGCTCATAGAGGTAG 58.785 50.000 0.00 0.00 0.00 3.18
2419 2448 3.118000 TCTCGAAGGTGCTCATAGAGGTA 60.118 47.826 6.17 0.00 0.00 3.08
2420 2449 2.028130 CTCGAAGGTGCTCATAGAGGT 58.972 52.381 0.00 0.00 0.00 3.85
2423 2454 2.946329 GTCTCTCGAAGGTGCTCATAGA 59.054 50.000 0.00 0.00 0.00 1.98
2446 2477 6.551385 AATCTCAAAATGATATGTCGGCTC 57.449 37.500 0.00 0.00 0.00 4.70
2464 2495 7.348201 CGCTTATGGTGACTTCATAAAATCTC 58.652 38.462 0.00 0.00 36.86 2.75
2473 2504 0.613260 AGGCGCTTATGGTGACTTCA 59.387 50.000 7.64 0.00 41.79 3.02
2474 2505 1.291132 GAGGCGCTTATGGTGACTTC 58.709 55.000 7.64 0.00 44.99 3.01
2478 2509 0.384309 CTACGAGGCGCTTATGGTGA 59.616 55.000 7.64 0.00 0.00 4.02
2508 2539 2.751166 CACGTTCAGTGGAAGGAGAT 57.249 50.000 4.38 0.00 46.77 2.75
2529 2560 2.027625 CAGGGTTCAAGTCGGCGAC 61.028 63.158 31.33 31.33 0.00 5.19
2532 2563 1.966451 CACCAGGGTTCAAGTCGGC 60.966 63.158 0.00 0.00 0.00 5.54
2543 2614 0.546598 GTATCCCCAACTCACCAGGG 59.453 60.000 0.00 0.00 42.44 4.45
2544 2615 0.546598 GGTATCCCCAACTCACCAGG 59.453 60.000 0.00 0.00 0.00 4.45
2554 2625 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
2555 2626 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
2557 2628 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
2558 2629 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
2565 2636 2.618045 GGTTGGATGGTTAGGTGGACAG 60.618 54.545 0.00 0.00 0.00 3.51
2571 2642 1.354368 CCTGTGGTTGGATGGTTAGGT 59.646 52.381 0.00 0.00 0.00 3.08
2623 2694 7.500141 ACATAGCCCAACAATCATTTTATTCC 58.500 34.615 0.00 0.00 0.00 3.01
2676 2747 9.593134 ACAACAACAACAACAACAATACATAAT 57.407 25.926 0.00 0.00 0.00 1.28
2681 2752 7.111353 ACAACAACAACAACAACAACAATAC 57.889 32.000 0.00 0.00 0.00 1.89
2686 2757 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2702 2773 8.742554 AACAAAAACAAAAACAACAACAACAA 57.257 23.077 0.00 0.00 0.00 2.83
2703 2774 8.742554 AAACAAAAACAAAAACAACAACAACA 57.257 23.077 0.00 0.00 0.00 3.33
2704 2775 9.453087 CAAAACAAAAACAAAAACAACAACAAC 57.547 25.926 0.00 0.00 0.00 3.32
2705 2776 9.191995 ACAAAACAAAAACAAAAACAACAACAA 57.808 22.222 0.00 0.00 0.00 2.83
2706 2777 8.742554 ACAAAACAAAAACAAAAACAACAACA 57.257 23.077 0.00 0.00 0.00 3.33
2707 2778 9.453087 CAACAAAACAAAAACAAAAACAACAAC 57.547 25.926 0.00 0.00 0.00 3.32
2708 2779 9.191995 ACAACAAAACAAAAACAAAAACAACAA 57.808 22.222 0.00 0.00 0.00 2.83
2709 2780 8.742554 ACAACAAAACAAAAACAAAAACAACA 57.257 23.077 0.00 0.00 0.00 3.33
2712 2783 9.191995 ACAAACAACAAAACAAAAACAAAAACA 57.808 22.222 0.00 0.00 0.00 2.83
2713 2784 9.453087 CACAAACAACAAAACAAAAACAAAAAC 57.547 25.926 0.00 0.00 0.00 2.43
2714 2785 9.191995 ACACAAACAACAAAACAAAAACAAAAA 57.808 22.222 0.00 0.00 0.00 1.94
2715 2786 8.638565 CACACAAACAACAAAACAAAAACAAAA 58.361 25.926 0.00 0.00 0.00 2.44
2716 2787 7.807907 ACACACAAACAACAAAACAAAAACAAA 59.192 25.926 0.00 0.00 0.00 2.83
2717 2788 7.305474 ACACACAAACAACAAAACAAAAACAA 58.695 26.923 0.00 0.00 0.00 2.83
2718 2789 6.842163 ACACACAAACAACAAAACAAAAACA 58.158 28.000 0.00 0.00 0.00 2.83
2719 2790 7.727094 AACACACAAACAACAAAACAAAAAC 57.273 28.000 0.00 0.00 0.00 2.43
2817 2888 4.164258 CATCGGGATGGAAAGGCC 57.836 61.111 0.00 0.00 35.24 5.19
2871 2942 5.134339 TCACTCCCCTTTATCTATGCCATTT 59.866 40.000 0.00 0.00 0.00 2.32
2877 2948 5.011533 CCTCACTCACTCCCCTTTATCTATG 59.988 48.000 0.00 0.00 0.00 2.23
2917 2988 9.884814 ATGGAGGAAGTACTAGTTTATGATACT 57.115 33.333 0.00 0.00 0.00 2.12
2934 3005 6.152661 TGCCTTGTATACAAAAATGGAGGAAG 59.847 38.462 20.31 5.98 35.15 3.46
2941 3012 6.861055 ACGAAGTTGCCTTGTATACAAAAATG 59.139 34.615 18.55 7.55 37.78 2.32
2943 3014 6.380095 ACGAAGTTGCCTTGTATACAAAAA 57.620 33.333 18.55 10.84 37.78 1.94
2966 3037 5.122512 TCCTTGTTTTGTTGACACGAAAA 57.877 34.783 0.00 0.00 37.92 2.29
2971 3042 9.341899 GACATATAATCCTTGTTTTGTTGACAC 57.658 33.333 0.00 0.00 0.00 3.67
2993 3069 9.221933 TCGGTAATAGTTTATGTTTTGTGACAT 57.778 29.630 0.00 0.00 42.57 3.06
3026 3102 3.446161 ACCATTGGATGCACATCTCAAAG 59.554 43.478 10.37 9.33 37.92 2.77
3080 3171 3.255642 GGCTGCCAAGTCACAAAATTCTA 59.744 43.478 15.17 0.00 0.00 2.10
3105 3196 8.958119 ATTAATCTTAATGAACTCCGTAGCAA 57.042 30.769 0.00 0.00 32.42 3.91
3164 3255 1.371183 CCACCACATCCACACTCGT 59.629 57.895 0.00 0.00 0.00 4.18
3232 3323 3.701205 TCATCCACACTATTGCACACT 57.299 42.857 0.00 0.00 0.00 3.55
3272 3364 1.326213 CCAATGTATGGCCCCGCAAA 61.326 55.000 0.00 0.00 43.80 3.68
3297 3389 8.648698 TTCTAAAATGATGGATTTGTGGAGAA 57.351 30.769 0.00 0.00 34.30 2.87
3308 3400 9.177608 AGAACAATCGATTTCTAAAATGATGGA 57.822 29.630 8.21 0.00 30.01 3.41
3417 3509 8.963725 TGGATATCTTGCAATTTATCATCATCC 58.036 33.333 21.21 14.56 0.00 3.51
3472 3564 4.060038 ACTGAACTTCACAATCTCGTGT 57.940 40.909 0.00 0.00 38.12 4.49
3495 3587 6.619744 AGCACGTCATGAGATCTATTATCAG 58.380 40.000 0.00 0.00 0.00 2.90
3505 3597 6.699204 CACTATTAAGAAGCACGTCATGAGAT 59.301 38.462 0.00 0.00 0.00 2.75
3509 3601 6.408858 AACACTATTAAGAAGCACGTCATG 57.591 37.500 0.00 0.00 0.00 3.07
3513 3605 3.924686 CGGAACACTATTAAGAAGCACGT 59.075 43.478 0.00 0.00 0.00 4.49
3514 3606 3.924686 ACGGAACACTATTAAGAAGCACG 59.075 43.478 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.