Multiple sequence alignment - TraesCS5D01G082800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G082800 chr5D 100.000 5873 0 0 1 5873 84865728 84871600 0.000000e+00 10846.0
1 TraesCS5D01G082800 chr5D 83.193 119 19 1 4343 4461 49102608 49102725 2.240000e-19 108.0
2 TraesCS5D01G082800 chr5B 95.016 5096 161 56 1 5052 91927233 91932279 0.000000e+00 7917.0
3 TraesCS5D01G082800 chr5B 83.193 119 19 1 4343 4461 51828180 51828297 2.240000e-19 108.0
4 TraesCS5D01G082800 chr5A 93.968 3498 145 28 1584 5034 79261337 79264815 0.000000e+00 5230.0
5 TraesCS5D01G082800 chr5A 92.607 1569 86 12 1 1561 79259595 79261141 0.000000e+00 2228.0
6 TraesCS5D01G082800 chr5A 89.623 106 5 2 5292 5397 79264926 79265025 4.780000e-26 130.0
7 TraesCS5D01G082800 chr5A 85.470 117 16 1 5118 5234 79264814 79264929 2.870000e-23 121.0
8 TraesCS5D01G082800 chr5A 87.379 103 3 1 5405 5497 79267839 79267941 6.220000e-20 110.0
9 TraesCS5D01G082800 chr5A 82.353 119 20 1 4343 4461 38721108 38721225 1.040000e-17 102.0
10 TraesCS5D01G082800 chr2B 96.000 200 3 2 5679 5873 357919822 357919623 2.640000e-83 320.0
11 TraesCS5D01G082800 chr2B 94.924 197 5 2 5682 5873 647703283 647703479 2.660000e-78 303.0
12 TraesCS5D01G082800 chr2B 94.444 54 2 1 5633 5686 785216324 785216376 1.360000e-11 82.4
13 TraesCS5D01G082800 chr2B 91.525 59 3 2 5629 5685 555388025 555387967 4.880000e-11 80.5
14 TraesCS5D01G082800 chr3D 95.939 197 2 3 5682 5873 447584883 447585078 1.230000e-81 315.0
15 TraesCS5D01G082800 chr3D 95.431 197 5 1 5681 5873 226986765 226986569 1.590000e-80 311.0
16 TraesCS5D01G082800 chr7A 95.897 195 4 1 5683 5873 44210560 44210754 4.420000e-81 313.0
17 TraesCS5D01G082800 chr7A 81.102 127 20 4 4331 4455 438144524 438144648 1.350000e-16 99.0
18 TraesCS5D01G082800 chr1D 95.918 196 3 2 5683 5873 97740152 97740347 4.420000e-81 313.0
19 TraesCS5D01G082800 chr1D 89.720 107 10 1 985 1091 205124082 205123977 1.030000e-27 135.0
20 TraesCS5D01G082800 chr1D 89.720 107 10 1 985 1091 205278488 205278593 1.030000e-27 135.0
21 TraesCS5D01G082800 chr1D 95.918 49 2 0 5647 5695 454246801 454246849 4.880000e-11 80.5
22 TraesCS5D01G082800 chr1D 95.918 49 2 0 5647 5695 454246837 454246885 4.880000e-11 80.5
23 TraesCS5D01G082800 chr7D 95.408 196 4 2 5683 5873 239882260 239882455 2.060000e-79 307.0
24 TraesCS5D01G082800 chr7D 80.800 125 24 0 4331 4455 387915733 387915857 1.350000e-16 99.0
25 TraesCS5D01G082800 chr4D 95.385 195 5 1 5683 5873 479154484 479154290 2.060000e-79 307.0
26 TraesCS5D01G082800 chr1B 93.627 204 8 2 5675 5873 211479127 211478924 3.440000e-77 300.0
27 TraesCS5D01G082800 chr1B 92.982 57 3 1 5643 5698 613734673 613734617 1.360000e-11 82.4
28 TraesCS5D01G082800 chr6A 90.909 99 9 0 993 1091 352154903 352154805 3.690000e-27 134.0
29 TraesCS5D01G082800 chr1A 96.296 54 1 1 5633 5686 118503700 118503648 2.920000e-13 87.9
30 TraesCS5D01G082800 chr7B 96.226 53 1 1 5647 5699 490684468 490684519 1.050000e-12 86.1
31 TraesCS5D01G082800 chr7B 88.571 70 2 4 5622 5686 11252563 11252631 4.880000e-11 80.5
32 TraesCS5D01G082800 chr2A 96.154 52 0 2 5646 5695 156758685 156758634 3.770000e-12 84.2
33 TraesCS5D01G082800 chr2A 89.062 64 4 3 5624 5686 445332305 445332244 6.310000e-10 76.8
34 TraesCS5D01G082800 chr2D 94.444 54 1 1 5644 5695 627955056 627955003 1.360000e-11 82.4
35 TraesCS5D01G082800 chr2D 90.164 61 5 1 5635 5694 565533707 565533647 1.750000e-10 78.7
36 TraesCS5D01G082800 chr6D 95.918 49 2 0 5647 5695 271605413 271605365 4.880000e-11 80.5
37 TraesCS5D01G082800 chr6B 90.323 62 5 1 5633 5694 503547867 503547927 4.880000e-11 80.5
38 TraesCS5D01G082800 chr4A 84.146 82 12 1 2628 2709 544889100 544889180 1.750000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G082800 chr5D 84865728 84871600 5872 False 10846.0 10846 100.0000 1 5873 1 chr5D.!!$F2 5872
1 TraesCS5D01G082800 chr5B 91927233 91932279 5046 False 7917.0 7917 95.0160 1 5052 1 chr5B.!!$F2 5051
2 TraesCS5D01G082800 chr5A 79259595 79267941 8346 False 1563.8 5230 89.8094 1 5497 5 chr5A.!!$F2 5496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 204 1.678101 CCATTTTGATCCCCTTCGCTC 59.322 52.381 0.0 0.0 0.00 5.03 F
995 1009 2.388735 TCAGGTGACTCTCAGTTGTGT 58.611 47.619 0.0 0.0 40.21 3.72 F
2749 2950 0.871722 TCAAGCGTTCAAATGTCCCG 59.128 50.000 0.0 0.0 0.00 5.14 F
3076 3283 0.036010 CCACAGACGAGGAAGGCAAT 60.036 55.000 0.0 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 2382 2.091541 ACTGGGACCACAATAATTGCG 58.908 47.619 0.00 0.0 0.00 4.85 R
2991 3197 3.096489 ACTGCACGCAATTTGAACAAT 57.904 38.095 0.00 0.0 0.00 2.71 R
4518 4734 1.064611 CCGTTCTCTCTGGGGAGTAGA 60.065 57.143 0.00 0.0 40.29 2.59 R
5059 5314 0.111134 CGACGACGACGACTAACACA 60.111 55.000 15.32 0.0 42.66 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.038164 TGTCTGCTTGATTGACTGCTCT 59.962 45.455 0.00 0.00 0.00 4.09
52 53 2.005451 CTTGATTGACTGCTCTTCCCG 58.995 52.381 0.00 0.00 0.00 5.14
184 190 5.394553 GCCAAAGGTAATCTCCTCCATTTTG 60.395 44.000 0.00 0.00 36.74 2.44
193 200 3.203040 TCTCCTCCATTTTGATCCCCTTC 59.797 47.826 0.00 0.00 0.00 3.46
197 204 1.678101 CCATTTTGATCCCCTTCGCTC 59.322 52.381 0.00 0.00 0.00 5.03
216 223 3.074412 CTCCCGTTTCTGTATGCAGTTT 58.926 45.455 10.80 0.00 43.05 2.66
218 225 3.500680 TCCCGTTTCTGTATGCAGTTTTC 59.499 43.478 10.80 0.41 43.05 2.29
314 321 6.183360 GCTTCAAACAAAATCCAGCTTTATCG 60.183 38.462 0.00 0.00 0.00 2.92
315 322 6.325919 TCAAACAAAATCCAGCTTTATCGT 57.674 33.333 0.00 0.00 0.00 3.73
319 326 4.100529 CAAAATCCAGCTTTATCGTGCAG 58.899 43.478 0.00 0.00 0.00 4.41
388 395 8.533965 CATTTTCTTGAATTTACAGTGTGTGTG 58.466 33.333 5.88 0.00 40.69 3.82
390 397 6.117911 TCTTGAATTTACAGTGTGTGTGTG 57.882 37.500 5.88 0.00 40.69 3.82
391 398 5.645929 TCTTGAATTTACAGTGTGTGTGTGT 59.354 36.000 5.88 0.00 40.69 3.72
392 399 5.228579 TGAATTTACAGTGTGTGTGTGTG 57.771 39.130 5.88 0.00 40.69 3.82
595 609 2.998316 AAGATTCCAGCCTCACTAGC 57.002 50.000 0.00 0.00 0.00 3.42
822 836 9.582874 TCTAGAGGGAGAGATATCCTACTTAAT 57.417 37.037 0.00 0.00 39.50 1.40
995 1009 2.388735 TCAGGTGACTCTCAGTTGTGT 58.611 47.619 0.00 0.00 40.21 3.72
1098 1112 6.773976 TGTTTCAGTTCTCAATCTGGTTTT 57.226 33.333 0.00 0.00 33.13 2.43
1204 1218 4.925054 TGTACATAAAAGTGGCTGTACGTC 59.075 41.667 0.00 0.00 44.30 4.34
1508 1523 5.874810 TCTATGCTGAGTTGTGATTGTTACC 59.125 40.000 0.00 0.00 0.00 2.85
1686 1875 2.731217 CTGTTTGTGTTAAGCAGTGGC 58.269 47.619 0.00 0.00 41.61 5.01
1827 2016 4.280174 AGCATGTGCCAATTTCCTCATATC 59.720 41.667 0.57 0.00 43.38 1.63
2183 2382 3.670627 GCCGTGTGTGATCATTTTTCCTC 60.671 47.826 0.00 0.00 0.00 3.71
2202 2401 2.355756 CTCGCAATTATTGTGGTCCCAG 59.644 50.000 17.00 4.56 41.37 4.45
2314 2514 3.311871 AGATTTGCATGAGACTTCATCGC 59.688 43.478 0.00 5.56 42.12 4.58
2386 2586 6.345096 TCATTGACACACTTCAGTATCAGA 57.655 37.500 0.00 0.00 0.00 3.27
2453 2654 4.858850 TGCCTATGATGATGTCAAAGGTT 58.141 39.130 0.00 0.00 40.97 3.50
2495 2696 8.105097 TGCAAACACTTTAAATACTGAGCATA 57.895 30.769 0.00 0.00 0.00 3.14
2749 2950 0.871722 TCAAGCGTTCAAATGTCCCG 59.128 50.000 0.00 0.00 0.00 5.14
2844 3045 7.656354 AGGGAGATGGAGTATATGTGATATCA 58.344 38.462 0.00 0.00 0.00 2.15
2991 3197 9.880157 GTCCTTGGTTAAATAGTACTGACATTA 57.120 33.333 5.39 0.00 0.00 1.90
3055 3262 0.805711 GCTTGCAAACGTTGGTTGCT 60.806 50.000 20.62 0.00 36.25 3.91
3076 3283 0.036010 CCACAGACGAGGAAGGCAAT 60.036 55.000 0.00 0.00 0.00 3.56
3148 3355 1.541147 TGTGCAAAGTTCTGCTATGGC 59.459 47.619 0.00 0.00 43.07 4.40
3184 3391 2.429571 GCGTACAACGTCCTCGCA 60.430 61.111 17.51 0.00 44.73 5.10
3271 3478 4.099633 AGATTGATGTGTTCCTCTCCTCA 58.900 43.478 0.00 0.00 0.00 3.86
3313 3520 0.036105 ACTCCATCATCGTGCTGCAA 60.036 50.000 2.77 0.00 0.00 4.08
3511 3718 3.023949 GCTGACGGTGCCCAGAGAT 62.024 63.158 0.00 0.00 32.37 2.75
3589 3796 1.076485 CATCAAGGCCAAGGGGAGG 60.076 63.158 5.01 0.00 35.59 4.30
3613 3820 3.775654 GGCGAGGTGGTGGGAGAG 61.776 72.222 0.00 0.00 0.00 3.20
3741 3948 2.125188 GCTGCCACCTGAGAGAGC 60.125 66.667 0.00 0.00 0.00 4.09
3745 3952 3.074999 GCCACCTGAGAGAGCCTCG 62.075 68.421 0.00 0.00 44.92 4.63
3880 4087 4.497473 GGTCTCTGATCTTCTGATACCG 57.503 50.000 0.00 0.00 34.02 4.02
3953 4160 0.326264 GGAGGAGTTCATGGTGCAGT 59.674 55.000 0.00 0.00 0.00 4.40
4005 4212 1.740332 GAGAGCTACCCGGCCTCTTC 61.740 65.000 0.00 0.75 31.58 2.87
4011 4218 4.148825 CCCGGCCTCTTCGGTCTG 62.149 72.222 0.00 0.00 45.51 3.51
4093 4300 0.103876 AAGACCCCAACCTCCCTCTT 60.104 55.000 0.00 0.00 0.00 2.85
4112 4319 4.071423 TCTTCAAAAGTTCATCGCCATCA 58.929 39.130 0.00 0.00 0.00 3.07
4212 4422 4.448210 ACCTACATACTTGCCCATTTACG 58.552 43.478 0.00 0.00 0.00 3.18
4213 4423 3.813166 CCTACATACTTGCCCATTTACGG 59.187 47.826 0.00 0.00 0.00 4.02
4218 4428 2.981898 ACTTGCCCATTTACGGACTAC 58.018 47.619 0.00 0.00 0.00 2.73
4220 4430 3.008704 ACTTGCCCATTTACGGACTACTT 59.991 43.478 0.00 0.00 0.00 2.24
4221 4431 4.223477 ACTTGCCCATTTACGGACTACTTA 59.777 41.667 0.00 0.00 0.00 2.24
4222 4432 5.104652 ACTTGCCCATTTACGGACTACTTAT 60.105 40.000 0.00 0.00 0.00 1.73
4223 4433 6.098695 ACTTGCCCATTTACGGACTACTTATA 59.901 38.462 0.00 0.00 0.00 0.98
4224 4434 6.675413 TGCCCATTTACGGACTACTTATAT 57.325 37.500 0.00 0.00 0.00 0.86
4269 4479 3.256879 TGTGTTTGTTTGTTGGAGCTCAA 59.743 39.130 17.19 0.00 0.00 3.02
4416 4629 4.821589 CAGAACGAGCGCCTCCCC 62.822 72.222 2.29 0.00 0.00 4.81
4504 4720 1.987855 TCTGATCACCACCCGTCCC 60.988 63.158 0.00 0.00 0.00 4.46
4506 4722 2.687566 GATCACCACCCGTCCCCT 60.688 66.667 0.00 0.00 0.00 4.79
4521 4737 3.150335 CCTGCCCTGCGCTCTCTA 61.150 66.667 9.73 0.00 38.78 2.43
4860 5079 0.889186 ATTCACGGAACACCAGGCAC 60.889 55.000 0.00 0.00 0.00 5.01
4899 5121 3.580022 CCTTGGCATTCTTCCCTTTTTCT 59.420 43.478 0.00 0.00 0.00 2.52
4902 5124 5.213891 TGGCATTCTTCCCTTTTTCTTTC 57.786 39.130 0.00 0.00 0.00 2.62
4906 5128 5.631096 GCATTCTTCCCTTTTTCTTTCTTCG 59.369 40.000 0.00 0.00 0.00 3.79
4907 5129 6.515035 GCATTCTTCCCTTTTTCTTTCTTCGA 60.515 38.462 0.00 0.00 0.00 3.71
4909 5131 6.803154 TCTTCCCTTTTTCTTTCTTCGATC 57.197 37.500 0.00 0.00 0.00 3.69
4913 5135 3.127030 CCTTTTTCTTTCTTCGATCGGGG 59.873 47.826 16.41 8.52 0.00 5.73
4914 5136 3.412237 TTTTCTTTCTTCGATCGGGGT 57.588 42.857 16.41 0.00 0.00 4.95
4916 5138 1.848652 TCTTTCTTCGATCGGGGTCT 58.151 50.000 16.41 0.00 0.00 3.85
4919 5141 2.001361 TTCTTCGATCGGGGTCTCGC 62.001 60.000 16.41 0.00 34.94 5.03
4920 5142 2.439701 TTCGATCGGGGTCTCGCT 60.440 61.111 16.41 0.00 34.94 4.93
4996 5251 8.315482 AGTTAGTGTATTGTTTGGTTGGTTTTT 58.685 29.630 0.00 0.00 0.00 1.94
5007 5262 7.070074 TGTTTGGTTGGTTTTTGGTGTCTATAT 59.930 33.333 0.00 0.00 0.00 0.86
5035 5290 4.436113 AAAATCTGGTTTTGGGTTGCAT 57.564 36.364 0.00 0.00 38.56 3.96
5037 5292 4.436113 AATCTGGTTTTGGGTTGCATTT 57.564 36.364 0.00 0.00 0.00 2.32
5046 5301 3.681593 TGGGTTGCATTTGATCCAAAG 57.318 42.857 0.00 0.00 36.76 2.77
5052 5307 4.782019 TGCATTTGATCCAAAGTGGTAC 57.218 40.909 0.00 0.00 39.03 3.34
5053 5308 4.406456 TGCATTTGATCCAAAGTGGTACT 58.594 39.130 0.00 0.00 39.03 2.73
5054 5309 5.565509 TGCATTTGATCCAAAGTGGTACTA 58.434 37.500 0.00 0.00 39.03 1.82
5055 5310 5.414454 TGCATTTGATCCAAAGTGGTACTAC 59.586 40.000 0.19 0.19 39.03 2.73
5056 5311 5.414454 GCATTTGATCCAAAGTGGTACTACA 59.586 40.000 12.29 0.00 39.03 2.74
5057 5312 6.095440 GCATTTGATCCAAAGTGGTACTACAT 59.905 38.462 12.29 0.00 39.03 2.29
5058 5313 7.475015 CATTTGATCCAAAGTGGTACTACATG 58.525 38.462 12.29 9.73 39.03 3.21
5059 5314 5.755409 TGATCCAAAGTGGTACTACATGT 57.245 39.130 12.29 2.69 39.03 3.21
5060 5315 5.487433 TGATCCAAAGTGGTACTACATGTG 58.513 41.667 12.29 6.13 39.03 3.21
5061 5316 4.967084 TCCAAAGTGGTACTACATGTGT 57.033 40.909 12.29 7.36 39.03 3.72
5062 5317 4.637276 TCCAAAGTGGTACTACATGTGTG 58.363 43.478 12.29 3.79 39.03 3.82
5063 5318 4.101898 TCCAAAGTGGTACTACATGTGTGT 59.898 41.667 12.29 9.92 39.03 3.72
5064 5319 4.819630 CCAAAGTGGTACTACATGTGTGTT 59.180 41.667 12.29 0.00 34.68 3.32
5065 5320 5.992829 CCAAAGTGGTACTACATGTGTGTTA 59.007 40.000 12.29 0.00 34.68 2.41
5066 5321 6.147164 CCAAAGTGGTACTACATGTGTGTTAG 59.853 42.308 12.29 0.00 34.68 2.34
5067 5322 6.415206 AAGTGGTACTACATGTGTGTTAGT 57.585 37.500 12.29 6.01 39.77 2.24
5068 5323 6.022163 AGTGGTACTACATGTGTGTTAGTC 57.978 41.667 12.29 0.00 39.77 2.59
5069 5324 4.855388 GTGGTACTACATGTGTGTTAGTCG 59.145 45.833 9.11 0.00 39.77 4.18
5070 5325 4.520111 TGGTACTACATGTGTGTTAGTCGT 59.480 41.667 9.11 0.00 39.77 4.34
5071 5326 5.091431 GGTACTACATGTGTGTTAGTCGTC 58.909 45.833 9.11 0.00 39.77 4.20
5072 5327 3.818387 ACTACATGTGTGTTAGTCGTCG 58.182 45.455 9.11 0.00 39.77 5.12
5073 5328 2.787601 ACATGTGTGTTAGTCGTCGT 57.212 45.000 0.00 0.00 34.01 4.34
5074 5329 2.658285 ACATGTGTGTTAGTCGTCGTC 58.342 47.619 0.00 0.00 34.01 4.20
5075 5330 1.642360 CATGTGTGTTAGTCGTCGTCG 59.358 52.381 0.00 0.00 38.55 5.12
5076 5331 0.657312 TGTGTGTTAGTCGTCGTCGT 59.343 50.000 1.33 0.00 38.33 4.34
5077 5332 1.312752 GTGTGTTAGTCGTCGTCGTC 58.687 55.000 1.33 0.00 38.33 4.20
5078 5333 0.111134 TGTGTTAGTCGTCGTCGTCG 60.111 55.000 5.50 5.50 38.33 5.12
5079 5334 1.154599 TGTTAGTCGTCGTCGTCGC 60.155 57.895 7.01 3.07 38.33 5.19
5080 5335 1.154599 GTTAGTCGTCGTCGTCGCA 60.155 57.895 7.01 0.00 38.33 5.10
5081 5336 0.519999 GTTAGTCGTCGTCGTCGCAT 60.520 55.000 7.01 1.11 38.33 4.73
5082 5337 0.519792 TTAGTCGTCGTCGTCGCATG 60.520 55.000 7.01 0.00 38.33 4.06
5083 5338 2.300597 TAGTCGTCGTCGTCGCATGG 62.301 60.000 7.01 0.00 38.33 3.66
5095 5350 2.125512 GCATGGCGACTTCTCCGT 60.126 61.111 0.00 0.00 0.00 4.69
5096 5351 2.167861 GCATGGCGACTTCTCCGTC 61.168 63.158 0.00 0.00 0.00 4.79
5120 5375 4.508128 CTTTCCTCCGCCGCGCTA 62.508 66.667 7.42 0.00 0.00 4.26
5121 5376 4.071875 TTTCCTCCGCCGCGCTAA 62.072 61.111 7.42 0.00 0.00 3.09
5122 5377 3.592856 TTTCCTCCGCCGCGCTAAA 62.593 57.895 7.42 1.85 0.00 1.85
5123 5378 3.592856 TTCCTCCGCCGCGCTAAAA 62.593 57.895 7.42 0.00 0.00 1.52
5124 5379 3.564027 CCTCCGCCGCGCTAAAAG 61.564 66.667 7.42 0.00 0.00 2.27
5125 5380 4.223964 CTCCGCCGCGCTAAAAGC 62.224 66.667 7.42 0.00 38.02 3.51
5178 5433 2.305009 AGCAATGCTTGAATCTAGGGC 58.695 47.619 0.00 0.00 33.89 5.19
5179 5434 1.002033 GCAATGCTTGAATCTAGGGCG 60.002 52.381 0.00 0.00 0.00 6.13
5180 5435 1.002033 CAATGCTTGAATCTAGGGCGC 60.002 52.381 0.00 0.00 0.00 6.53
5181 5436 0.181114 ATGCTTGAATCTAGGGCGCA 59.819 50.000 10.83 0.00 0.00 6.09
5182 5437 0.744414 TGCTTGAATCTAGGGCGCAC 60.744 55.000 10.83 5.15 0.00 5.34
5183 5438 0.744414 GCTTGAATCTAGGGCGCACA 60.744 55.000 14.57 0.00 0.00 4.57
5184 5439 1.959042 CTTGAATCTAGGGCGCACAT 58.041 50.000 14.57 0.00 0.00 3.21
5185 5440 1.600957 CTTGAATCTAGGGCGCACATG 59.399 52.381 14.57 3.48 0.00 3.21
5186 5441 0.541392 TGAATCTAGGGCGCACATGT 59.459 50.000 14.57 0.00 0.00 3.21
5188 5443 0.541392 AATCTAGGGCGCACATGTGA 59.459 50.000 29.80 6.02 0.00 3.58
5190 5445 0.104855 TCTAGGGCGCACATGTGATC 59.895 55.000 29.80 18.06 0.00 2.92
5191 5446 1.217585 CTAGGGCGCACATGTGATCG 61.218 60.000 29.80 23.21 0.00 3.69
5192 5447 4.241999 GGGCGCACATGTGATCGC 62.242 66.667 30.66 30.66 45.99 4.58
5195 5450 3.686863 CGCACATGTGATCGCGTA 58.313 55.556 29.80 0.00 42.66 4.42
5196 5451 1.555066 CGCACATGTGATCGCGTAG 59.445 57.895 29.80 0.00 42.66 3.51
5197 5452 1.811217 CGCACATGTGATCGCGTAGG 61.811 60.000 29.80 0.00 42.66 3.18
5198 5453 1.490693 GCACATGTGATCGCGTAGGG 61.491 60.000 29.80 0.00 44.04 3.53
5201 5456 0.102300 CATGTGATCGCGTAGGGTGA 59.898 55.000 5.77 0.00 42.82 4.02
5234 5489 3.964031 TGTAGCAAATCTGGTTTTGGGTT 59.036 39.130 6.35 0.00 37.13 4.11
5235 5490 4.407296 TGTAGCAAATCTGGTTTTGGGTTT 59.593 37.500 6.35 0.00 37.13 3.27
5236 5491 4.502105 AGCAAATCTGGTTTTGGGTTTT 57.498 36.364 6.35 0.00 37.13 2.43
5237 5492 4.198530 AGCAAATCTGGTTTTGGGTTTTG 58.801 39.130 6.35 0.00 37.13 2.44
5238 5493 4.080638 AGCAAATCTGGTTTTGGGTTTTGA 60.081 37.500 0.00 0.00 37.13 2.69
5239 5494 4.821260 GCAAATCTGGTTTTGGGTTTTGAT 59.179 37.500 0.00 0.00 37.13 2.57
5240 5495 5.994668 GCAAATCTGGTTTTGGGTTTTGATA 59.005 36.000 0.00 0.00 37.13 2.15
5241 5496 6.147656 GCAAATCTGGTTTTGGGTTTTGATAG 59.852 38.462 0.00 0.00 37.13 2.08
5242 5497 4.864704 TCTGGTTTTGGGTTTTGATAGC 57.135 40.909 0.00 0.00 0.00 2.97
5243 5498 4.219115 TCTGGTTTTGGGTTTTGATAGCA 58.781 39.130 0.00 0.00 0.00 3.49
5244 5499 4.280677 TCTGGTTTTGGGTTTTGATAGCAG 59.719 41.667 0.00 0.00 0.00 4.24
5245 5500 3.323403 TGGTTTTGGGTTTTGATAGCAGG 59.677 43.478 0.00 0.00 0.00 4.85
5246 5501 3.576550 GGTTTTGGGTTTTGATAGCAGGA 59.423 43.478 0.00 0.00 0.00 3.86
5247 5502 4.222810 GGTTTTGGGTTTTGATAGCAGGAT 59.777 41.667 0.00 0.00 0.00 3.24
5248 5503 5.410924 GTTTTGGGTTTTGATAGCAGGATC 58.589 41.667 0.00 0.00 0.00 3.36
5249 5504 4.314522 TTGGGTTTTGATAGCAGGATCA 57.685 40.909 0.00 0.00 33.96 2.92
5250 5505 4.314522 TGGGTTTTGATAGCAGGATCAA 57.685 40.909 0.00 4.99 42.68 2.57
5251 5506 4.016444 TGGGTTTTGATAGCAGGATCAAC 58.984 43.478 7.88 0.69 43.76 3.18
5252 5507 4.016444 GGGTTTTGATAGCAGGATCAACA 58.984 43.478 7.88 0.89 43.76 3.33
5253 5508 4.096984 GGGTTTTGATAGCAGGATCAACAG 59.903 45.833 7.88 0.00 43.76 3.16
5254 5509 4.702131 GGTTTTGATAGCAGGATCAACAGT 59.298 41.667 7.88 0.00 43.76 3.55
5255 5510 5.183904 GGTTTTGATAGCAGGATCAACAGTT 59.816 40.000 7.88 0.00 43.76 3.16
5256 5511 6.294731 GGTTTTGATAGCAGGATCAACAGTTT 60.295 38.462 7.88 0.00 43.76 2.66
5257 5512 6.899393 TTTGATAGCAGGATCAACAGTTTT 57.101 33.333 7.88 0.00 43.76 2.43
5258 5513 7.994425 TTTGATAGCAGGATCAACAGTTTTA 57.006 32.000 7.88 0.00 43.76 1.52
5259 5514 6.985188 TGATAGCAGGATCAACAGTTTTAC 57.015 37.500 0.00 0.00 32.84 2.01
5260 5515 5.580691 TGATAGCAGGATCAACAGTTTTACG 59.419 40.000 0.00 0.00 32.84 3.18
5261 5516 3.740115 AGCAGGATCAACAGTTTTACGT 58.260 40.909 0.00 0.00 0.00 3.57
5262 5517 3.746492 AGCAGGATCAACAGTTTTACGTC 59.254 43.478 0.00 0.00 0.00 4.34
5263 5518 3.423123 GCAGGATCAACAGTTTTACGTCG 60.423 47.826 0.00 0.00 0.00 5.12
5264 5519 2.735134 AGGATCAACAGTTTTACGTCGC 59.265 45.455 0.00 0.00 0.00 5.19
5265 5520 2.159747 GGATCAACAGTTTTACGTCGCC 60.160 50.000 0.00 0.00 0.00 5.54
5266 5521 2.228138 TCAACAGTTTTACGTCGCCT 57.772 45.000 0.00 0.00 0.00 5.52
5267 5522 1.862201 TCAACAGTTTTACGTCGCCTG 59.138 47.619 0.00 0.00 0.00 4.85
5268 5523 0.584876 AACAGTTTTACGTCGCCTGC 59.415 50.000 0.00 0.00 0.00 4.85
5269 5524 0.249741 ACAGTTTTACGTCGCCTGCT 60.250 50.000 0.00 0.00 0.00 4.24
5270 5525 0.163788 CAGTTTTACGTCGCCTGCTG 59.836 55.000 0.00 0.00 0.00 4.41
5271 5526 0.032952 AGTTTTACGTCGCCTGCTGA 59.967 50.000 0.00 0.00 0.00 4.26
5272 5527 1.076332 GTTTTACGTCGCCTGCTGAT 58.924 50.000 0.00 0.00 0.00 2.90
5273 5528 1.463444 GTTTTACGTCGCCTGCTGATT 59.537 47.619 0.00 0.00 0.00 2.57
5274 5529 1.355971 TTTACGTCGCCTGCTGATTC 58.644 50.000 0.00 0.00 0.00 2.52
5275 5530 0.245266 TTACGTCGCCTGCTGATTCA 59.755 50.000 0.00 0.00 0.00 2.57
5276 5531 0.179137 TACGTCGCCTGCTGATTCAG 60.179 55.000 9.40 9.40 34.12 3.02
5277 5532 1.153765 CGTCGCCTGCTGATTCAGA 60.154 57.895 17.87 2.19 36.19 3.27
5278 5533 0.737367 CGTCGCCTGCTGATTCAGAA 60.737 55.000 17.87 5.97 36.19 3.02
5279 5534 1.005340 GTCGCCTGCTGATTCAGAAG 58.995 55.000 17.87 15.87 36.91 2.85
5285 5540 3.555527 CTGCTGATTCAGAAGGATCCA 57.444 47.619 17.87 3.14 33.65 3.41
5286 5541 3.882444 CTGCTGATTCAGAAGGATCCAA 58.118 45.455 17.87 0.00 33.65 3.53
5287 5542 4.267536 CTGCTGATTCAGAAGGATCCAAA 58.732 43.478 17.87 0.27 33.65 3.28
5288 5543 4.665451 TGCTGATTCAGAAGGATCCAAAA 58.335 39.130 17.87 0.63 32.44 2.44
5289 5544 4.703575 TGCTGATTCAGAAGGATCCAAAAG 59.296 41.667 17.87 0.96 32.44 2.27
5290 5545 4.097589 GCTGATTCAGAAGGATCCAAAAGG 59.902 45.833 17.87 0.00 32.44 3.11
5291 5546 4.603131 TGATTCAGAAGGATCCAAAAGGG 58.397 43.478 15.82 0.00 38.37 3.95
5292 5547 3.456380 TTCAGAAGGATCCAAAAGGGG 57.544 47.619 15.82 0.00 37.22 4.79
5293 5548 1.640670 TCAGAAGGATCCAAAAGGGGG 59.359 52.381 15.82 0.00 37.22 5.40
5294 5549 1.359130 CAGAAGGATCCAAAAGGGGGT 59.641 52.381 15.82 0.00 37.22 4.95
5295 5550 2.081855 AGAAGGATCCAAAAGGGGGTT 58.918 47.619 15.82 0.00 37.22 4.11
5351 5606 3.907927 CGGATCGGAGATATCTCGC 57.092 57.895 23.30 16.04 45.12 5.03
5353 5608 0.741915 GGATCGGAGATATCTCGCCC 59.258 60.000 23.30 17.21 45.12 6.13
5372 5627 4.589675 GCCCCCGACAAACCACCA 62.590 66.667 0.00 0.00 0.00 4.17
5373 5628 2.196229 CCCCCGACAAACCACCAA 59.804 61.111 0.00 0.00 0.00 3.67
5374 5629 2.197605 CCCCCGACAAACCACCAAC 61.198 63.158 0.00 0.00 0.00 3.77
5375 5630 2.548295 CCCCGACAAACCACCAACG 61.548 63.158 0.00 0.00 0.00 4.10
5387 5642 0.388649 CACCAACGAAGTCTCTCCCG 60.389 60.000 0.00 0.00 45.00 5.14
5391 5646 4.194720 CGAAGTCTCTCCCGGCGG 62.195 72.222 21.46 21.46 0.00 6.13
5403 5658 4.170062 CGGCGGCTGCTGTGAATG 62.170 66.667 18.77 0.00 42.79 2.67
5427 8488 0.978146 ATCGCCTGGAGGTTACAGCT 60.978 55.000 0.00 0.00 37.57 4.24
5498 8569 4.157120 GGCTACGGCGACCATGGT 62.157 66.667 19.89 19.89 39.81 3.55
5499 8570 2.890474 GCTACGGCGACCATGGTG 60.890 66.667 25.52 15.67 0.00 4.17
5500 8571 2.890474 CTACGGCGACCATGGTGC 60.890 66.667 25.52 24.11 0.00 5.01
5501 8572 4.460683 TACGGCGACCATGGTGCC 62.461 66.667 32.19 32.19 45.39 5.01
5516 8587 4.554036 GCCAGGCCCGAGTGGATC 62.554 72.222 12.83 0.00 35.67 3.36
5517 8588 2.765807 CCAGGCCCGAGTGGATCT 60.766 66.667 2.49 0.00 35.67 2.75
5518 8589 1.457643 CCAGGCCCGAGTGGATCTA 60.458 63.158 2.49 0.00 35.67 1.98
5519 8590 0.833834 CCAGGCCCGAGTGGATCTAT 60.834 60.000 2.49 0.00 35.67 1.98
5520 8591 1.550179 CCAGGCCCGAGTGGATCTATA 60.550 57.143 2.49 0.00 35.67 1.31
5521 8592 1.821753 CAGGCCCGAGTGGATCTATAG 59.178 57.143 0.00 0.00 37.49 1.31
5522 8593 0.533032 GGCCCGAGTGGATCTATAGC 59.467 60.000 0.00 0.00 37.49 2.97
5523 8594 0.533032 GCCCGAGTGGATCTATAGCC 59.467 60.000 0.00 0.00 37.49 3.93
5524 8595 1.893210 GCCCGAGTGGATCTATAGCCT 60.893 57.143 0.00 0.00 37.49 4.58
5525 8596 2.620886 GCCCGAGTGGATCTATAGCCTA 60.621 54.545 0.00 0.00 37.49 3.93
5526 8597 3.698289 CCCGAGTGGATCTATAGCCTAA 58.302 50.000 0.00 0.00 37.49 2.69
5527 8598 3.444388 CCCGAGTGGATCTATAGCCTAAC 59.556 52.174 0.00 0.00 37.49 2.34
5528 8599 3.127203 CCGAGTGGATCTATAGCCTAACG 59.873 52.174 0.00 0.00 37.49 3.18
5529 8600 4.001652 CGAGTGGATCTATAGCCTAACGA 58.998 47.826 0.00 0.00 30.18 3.85
5530 8601 4.636648 CGAGTGGATCTATAGCCTAACGAT 59.363 45.833 0.00 0.00 30.18 3.73
5531 8602 5.220700 CGAGTGGATCTATAGCCTAACGATC 60.221 48.000 0.00 5.51 30.18 3.69
5532 8603 4.636648 AGTGGATCTATAGCCTAACGATCG 59.363 45.833 14.88 14.88 33.15 3.69
5533 8604 3.945921 TGGATCTATAGCCTAACGATCGG 59.054 47.826 20.98 2.04 33.15 4.18
5534 8605 4.197750 GGATCTATAGCCTAACGATCGGA 58.802 47.826 20.98 5.91 33.15 4.55
5535 8606 4.822896 GGATCTATAGCCTAACGATCGGAT 59.177 45.833 20.98 10.47 33.15 4.18
5536 8607 5.278071 GGATCTATAGCCTAACGATCGGATG 60.278 48.000 20.98 8.21 33.15 3.51
5537 8608 4.840271 TCTATAGCCTAACGATCGGATGA 58.160 43.478 20.98 0.08 0.00 2.92
5538 8609 5.250982 TCTATAGCCTAACGATCGGATGAA 58.749 41.667 20.98 0.00 0.00 2.57
5539 8610 5.886474 TCTATAGCCTAACGATCGGATGAAT 59.114 40.000 20.98 6.48 0.00 2.57
5540 8611 3.753294 AGCCTAACGATCGGATGAATT 57.247 42.857 20.98 5.84 0.00 2.17
5541 8612 3.393800 AGCCTAACGATCGGATGAATTG 58.606 45.455 20.98 0.51 0.00 2.32
5542 8613 3.069586 AGCCTAACGATCGGATGAATTGA 59.930 43.478 20.98 0.00 0.00 2.57
5543 8614 3.430218 GCCTAACGATCGGATGAATTGAG 59.570 47.826 20.98 0.00 0.00 3.02
5544 8615 4.796290 GCCTAACGATCGGATGAATTGAGA 60.796 45.833 20.98 0.00 0.00 3.27
5545 8616 4.920340 CCTAACGATCGGATGAATTGAGAG 59.080 45.833 20.98 0.00 0.00 3.20
5546 8617 4.655762 AACGATCGGATGAATTGAGAGA 57.344 40.909 20.98 0.00 0.00 3.10
5547 8618 4.862902 ACGATCGGATGAATTGAGAGAT 57.137 40.909 20.98 0.00 0.00 2.75
5548 8619 4.804108 ACGATCGGATGAATTGAGAGATC 58.196 43.478 20.98 0.00 0.00 2.75
5549 8620 4.279420 ACGATCGGATGAATTGAGAGATCA 59.721 41.667 20.98 0.00 34.40 2.92
5550 8621 5.221322 ACGATCGGATGAATTGAGAGATCAA 60.221 40.000 20.98 0.00 34.40 2.57
5551 8622 5.693555 CGATCGGATGAATTGAGAGATCAAA 59.306 40.000 7.38 0.00 34.40 2.69
5552 8623 6.346439 CGATCGGATGAATTGAGAGATCAAAC 60.346 42.308 7.38 0.00 34.40 2.93
5553 8624 4.805719 TCGGATGAATTGAGAGATCAAACG 59.194 41.667 0.00 0.00 32.94 3.60
5554 8625 4.025396 CGGATGAATTGAGAGATCAAACGG 60.025 45.833 0.00 0.00 32.94 4.44
5555 8626 4.274459 GGATGAATTGAGAGATCAAACGGG 59.726 45.833 0.00 0.00 32.94 5.28
5556 8627 4.551702 TGAATTGAGAGATCAAACGGGA 57.448 40.909 0.00 0.00 32.94 5.14
5557 8628 4.905429 TGAATTGAGAGATCAAACGGGAA 58.095 39.130 0.00 0.00 32.94 3.97
5558 8629 5.312895 TGAATTGAGAGATCAAACGGGAAA 58.687 37.500 0.00 0.00 32.94 3.13
5559 8630 5.945784 TGAATTGAGAGATCAAACGGGAAAT 59.054 36.000 0.00 0.00 32.94 2.17
5560 8631 6.434028 TGAATTGAGAGATCAAACGGGAAATT 59.566 34.615 0.00 0.00 32.94 1.82
5561 8632 7.609918 TGAATTGAGAGATCAAACGGGAAATTA 59.390 33.333 0.00 0.00 32.94 1.40
5562 8633 7.938140 ATTGAGAGATCAAACGGGAAATTAA 57.062 32.000 0.00 0.00 32.94 1.40
5563 8634 6.985188 TGAGAGATCAAACGGGAAATTAAG 57.015 37.500 0.00 0.00 0.00 1.85
5564 8635 5.880332 TGAGAGATCAAACGGGAAATTAAGG 59.120 40.000 0.00 0.00 0.00 2.69
5565 8636 4.640647 AGAGATCAAACGGGAAATTAAGGC 59.359 41.667 0.00 0.00 0.00 4.35
5566 8637 4.600062 AGATCAAACGGGAAATTAAGGCT 58.400 39.130 0.00 0.00 0.00 4.58
5567 8638 5.016831 AGATCAAACGGGAAATTAAGGCTT 58.983 37.500 4.58 4.58 0.00 4.35
5568 8639 4.513198 TCAAACGGGAAATTAAGGCTTG 57.487 40.909 10.69 0.00 0.00 4.01
5569 8640 3.257127 TCAAACGGGAAATTAAGGCTTGG 59.743 43.478 10.69 0.00 0.00 3.61
5570 8641 2.891191 ACGGGAAATTAAGGCTTGGA 57.109 45.000 10.69 0.00 0.00 3.53
5571 8642 3.382083 ACGGGAAATTAAGGCTTGGAT 57.618 42.857 10.69 0.82 0.00 3.41
5572 8643 3.288092 ACGGGAAATTAAGGCTTGGATC 58.712 45.455 10.69 3.00 0.00 3.36
5573 8644 2.623416 CGGGAAATTAAGGCTTGGATCC 59.377 50.000 10.69 4.20 0.00 3.36
5574 8645 2.623416 GGGAAATTAAGGCTTGGATCCG 59.377 50.000 10.69 0.00 0.00 4.18
5575 8646 2.623416 GGAAATTAAGGCTTGGATCCGG 59.377 50.000 10.69 0.00 0.00 5.14
5576 8647 3.551846 GAAATTAAGGCTTGGATCCGGA 58.448 45.455 6.61 6.61 0.00 5.14
5577 8648 3.884037 AATTAAGGCTTGGATCCGGAT 57.116 42.857 19.21 19.21 0.00 4.18
5578 8649 3.884037 ATTAAGGCTTGGATCCGGATT 57.116 42.857 20.22 2.83 0.00 3.01
5579 8650 3.662759 TTAAGGCTTGGATCCGGATTT 57.337 42.857 20.22 9.45 0.00 2.17
5580 8651 4.781775 TTAAGGCTTGGATCCGGATTTA 57.218 40.909 20.22 8.38 0.00 1.40
5581 8652 3.884037 AAGGCTTGGATCCGGATTTAT 57.116 42.857 20.22 0.00 0.00 1.40
5582 8653 4.993705 AAGGCTTGGATCCGGATTTATA 57.006 40.909 20.22 2.52 0.00 0.98
5583 8654 4.559862 AGGCTTGGATCCGGATTTATAG 57.440 45.455 20.22 14.24 0.00 1.31
5584 8655 3.264450 AGGCTTGGATCCGGATTTATAGG 59.736 47.826 20.22 8.36 0.00 2.57
5585 8656 3.610911 GCTTGGATCCGGATTTATAGGG 58.389 50.000 20.22 6.83 0.00 3.53
5586 8657 3.263425 GCTTGGATCCGGATTTATAGGGA 59.737 47.826 20.22 0.00 0.00 4.20
5587 8658 4.263331 GCTTGGATCCGGATTTATAGGGAA 60.263 45.833 20.22 2.34 31.24 3.97
5588 8659 4.903045 TGGATCCGGATTTATAGGGAAC 57.097 45.455 20.22 0.76 31.24 3.62
5606 8677 7.540474 AGGGAACTATGGTGTACAGTATATG 57.460 40.000 0.00 0.00 40.61 1.78
5607 8678 7.073854 AGGGAACTATGGTGTACAGTATATGT 58.926 38.462 0.00 0.00 42.64 2.29
5608 8679 7.567622 AGGGAACTATGGTGTACAGTATATGTT 59.432 37.037 0.00 5.18 40.81 2.71
5609 8680 8.208903 GGGAACTATGGTGTACAGTATATGTTT 58.791 37.037 0.00 0.00 39.96 2.83
5610 8681 9.042008 GGAACTATGGTGTACAGTATATGTTTG 57.958 37.037 0.00 0.00 39.96 2.93
5611 8682 9.595823 GAACTATGGTGTACAGTATATGTTTGT 57.404 33.333 0.00 0.00 39.96 2.83
5614 8685 9.193133 CTATGGTGTACAGTATATGTTTGTAGC 57.807 37.037 0.00 0.00 39.96 3.58
5615 8686 6.342906 TGGTGTACAGTATATGTTTGTAGCC 58.657 40.000 0.00 0.00 39.96 3.93
5616 8687 6.155565 TGGTGTACAGTATATGTTTGTAGCCT 59.844 38.462 0.00 0.00 39.96 4.58
5617 8688 6.700520 GGTGTACAGTATATGTTTGTAGCCTC 59.299 42.308 0.00 0.00 39.96 4.70
5618 8689 7.417570 GGTGTACAGTATATGTTTGTAGCCTCT 60.418 40.741 0.00 0.00 39.96 3.69
5619 8690 7.980099 GTGTACAGTATATGTTTGTAGCCTCTT 59.020 37.037 0.00 0.00 39.96 2.85
5620 8691 7.979537 TGTACAGTATATGTTTGTAGCCTCTTG 59.020 37.037 0.00 0.00 39.96 3.02
5621 8692 6.349300 ACAGTATATGTTTGTAGCCTCTTGG 58.651 40.000 0.00 0.00 39.96 3.61
5633 8704 2.276732 CCTCTTGGCAAACTTGGAGA 57.723 50.000 13.27 0.00 0.00 3.71
5634 8705 2.586425 CCTCTTGGCAAACTTGGAGAA 58.414 47.619 13.27 0.00 0.00 2.87
5635 8706 3.160269 CCTCTTGGCAAACTTGGAGAAT 58.840 45.455 13.27 0.00 0.00 2.40
5636 8707 4.335416 CCTCTTGGCAAACTTGGAGAATA 58.665 43.478 13.27 0.00 0.00 1.75
5637 8708 4.766891 CCTCTTGGCAAACTTGGAGAATAA 59.233 41.667 13.27 0.00 0.00 1.40
5638 8709 5.420104 CCTCTTGGCAAACTTGGAGAATAAT 59.580 40.000 13.27 0.00 0.00 1.28
5639 8710 6.603201 CCTCTTGGCAAACTTGGAGAATAATA 59.397 38.462 13.27 0.00 0.00 0.98
5640 8711 7.122650 CCTCTTGGCAAACTTGGAGAATAATAA 59.877 37.037 13.27 0.00 0.00 1.40
5641 8712 8.055279 TCTTGGCAAACTTGGAGAATAATAAG 57.945 34.615 0.00 0.00 0.00 1.73
5642 8713 7.888021 TCTTGGCAAACTTGGAGAATAATAAGA 59.112 33.333 0.00 0.00 0.00 2.10
5643 8714 8.593945 TTGGCAAACTTGGAGAATAATAAGAT 57.406 30.769 0.00 0.00 0.00 2.40
5644 8715 9.693739 TTGGCAAACTTGGAGAATAATAAGATA 57.306 29.630 0.00 0.00 0.00 1.98
5645 8716 9.120538 TGGCAAACTTGGAGAATAATAAGATAC 57.879 33.333 0.00 0.00 0.00 2.24
5646 8717 9.343539 GGCAAACTTGGAGAATAATAAGATACT 57.656 33.333 0.00 0.00 0.00 2.12
5654 8725 9.756571 TGGAGAATAATAAGATACTACTCCCTC 57.243 37.037 0.00 0.00 40.11 4.30
5655 8726 9.192642 GGAGAATAATAAGATACTACTCCCTCC 57.807 40.741 0.00 0.00 36.42 4.30
5656 8727 8.810990 AGAATAATAAGATACTACTCCCTCCG 57.189 38.462 0.00 0.00 0.00 4.63
5657 8728 8.392479 AGAATAATAAGATACTACTCCCTCCGT 58.608 37.037 0.00 0.00 0.00 4.69
5658 8729 8.953223 AATAATAAGATACTACTCCCTCCGTT 57.047 34.615 0.00 0.00 0.00 4.44
5659 8730 6.897706 AATAAGATACTACTCCCTCCGTTC 57.102 41.667 0.00 0.00 0.00 3.95
5660 8731 3.226682 AGATACTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
5661 8732 2.512896 AGATACTACTCCCTCCGTTCCA 59.487 50.000 0.00 0.00 0.00 3.53
5662 8733 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
5663 8734 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5664 8735 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
5665 8736 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5666 8737 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5667 8738 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5668 8739 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5669 8740 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5670 8741 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5671 8742 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5672 8743 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5673 8744 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5674 8745 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5675 8746 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5676 8747 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5677 8748 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5678 8749 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5679 8750 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5680 8751 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5681 8752 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
5682 8753 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
5683 8754 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
5684 8755 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
5685 8756 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
5689 8760 9.440761 AATAGATGACCCAACTTTATACTCTCT 57.559 33.333 0.00 0.00 0.00 3.10
5690 8761 7.354751 AGATGACCCAACTTTATACTCTCTC 57.645 40.000 0.00 0.00 0.00 3.20
5691 8762 5.934402 TGACCCAACTTTATACTCTCTCC 57.066 43.478 0.00 0.00 0.00 3.71
5692 8763 4.401519 TGACCCAACTTTATACTCTCTCCG 59.598 45.833 0.00 0.00 0.00 4.63
5693 8764 4.351127 ACCCAACTTTATACTCTCTCCGT 58.649 43.478 0.00 0.00 0.00 4.69
5694 8765 4.776308 ACCCAACTTTATACTCTCTCCGTT 59.224 41.667 0.00 0.00 0.00 4.44
5695 8766 5.247792 ACCCAACTTTATACTCTCTCCGTTT 59.752 40.000 0.00 0.00 0.00 3.60
5696 8767 5.811100 CCCAACTTTATACTCTCTCCGTTTC 59.189 44.000 0.00 0.00 0.00 2.78
5697 8768 6.351117 CCCAACTTTATACTCTCTCCGTTTCT 60.351 42.308 0.00 0.00 0.00 2.52
5698 8769 7.097834 CCAACTTTATACTCTCTCCGTTTCTT 58.902 38.462 0.00 0.00 0.00 2.52
5699 8770 7.603024 CCAACTTTATACTCTCTCCGTTTCTTT 59.397 37.037 0.00 0.00 0.00 2.52
5700 8771 8.989980 CAACTTTATACTCTCTCCGTTTCTTTT 58.010 33.333 0.00 0.00 0.00 2.27
5701 8772 9.557061 AACTTTATACTCTCTCCGTTTCTTTTT 57.443 29.630 0.00 0.00 0.00 1.94
5705 8776 9.852091 TTATACTCTCTCCGTTTCTTTTTAGTC 57.148 33.333 0.00 0.00 0.00 2.59
5706 8777 5.539979 ACTCTCTCCGTTTCTTTTTAGTCC 58.460 41.667 0.00 0.00 0.00 3.85
5707 8778 4.553323 TCTCTCCGTTTCTTTTTAGTCCG 58.447 43.478 0.00 0.00 0.00 4.79
5708 8779 3.062042 TCTCCGTTTCTTTTTAGTCCGC 58.938 45.455 0.00 0.00 0.00 5.54
5709 8780 2.803956 CTCCGTTTCTTTTTAGTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
5710 8781 3.404899 TCCGTTTCTTTTTAGTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
5711 8782 4.567971 TCCGTTTCTTTTTAGTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
5712 8783 5.180271 TCCGTTTCTTTTTAGTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
5713 8784 6.339730 TCCGTTTCTTTTTAGTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
5714 8785 6.817641 TCCGTTTCTTTTTAGTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
5715 8786 7.010738 TCCGTTTCTTTTTAGTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
5716 8787 7.010738 CCGTTTCTTTTTAGTCCGCATATAAGA 59.989 37.037 0.00 0.00 0.00 2.10
5717 8788 8.548721 CGTTTCTTTTTAGTCCGCATATAAGAT 58.451 33.333 0.00 0.00 0.00 2.40
5721 8792 8.836413 TCTTTTTAGTCCGCATATAAGATTTGG 58.164 33.333 0.00 0.00 0.00 3.28
5722 8793 8.514330 TTTTTAGTCCGCATATAAGATTTGGT 57.486 30.769 0.00 0.00 0.00 3.67
5723 8794 7.724305 TTTAGTCCGCATATAAGATTTGGTC 57.276 36.000 0.00 0.00 0.00 4.02
5724 8795 5.290493 AGTCCGCATATAAGATTTGGTCA 57.710 39.130 0.00 0.00 0.00 4.02
5725 8796 5.680619 AGTCCGCATATAAGATTTGGTCAA 58.319 37.500 0.00 0.00 0.00 3.18
5726 8797 6.119536 AGTCCGCATATAAGATTTGGTCAAA 58.880 36.000 0.00 0.00 34.46 2.69
5727 8798 6.260936 AGTCCGCATATAAGATTTGGTCAAAG 59.739 38.462 2.55 0.00 33.32 2.77
5728 8799 6.038271 GTCCGCATATAAGATTTGGTCAAAGT 59.962 38.462 2.55 0.00 33.32 2.66
5729 8800 6.260050 TCCGCATATAAGATTTGGTCAAAGTC 59.740 38.462 2.55 1.51 33.32 3.01
5730 8801 6.038161 CCGCATATAAGATTTGGTCAAAGTCA 59.962 38.462 2.55 0.00 33.32 3.41
5731 8802 7.415095 CCGCATATAAGATTTGGTCAAAGTCAA 60.415 37.037 2.55 0.00 33.32 3.18
5732 8803 7.967854 CGCATATAAGATTTGGTCAAAGTCAAA 59.032 33.333 2.55 0.00 37.29 2.69
5733 8804 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
5841 8912 9.908152 CATGCATCATTATTGATTTCATAGTGT 57.092 29.630 0.00 0.00 40.70 3.55
5842 8913 9.908152 ATGCATCATTATTGATTTCATAGTGTG 57.092 29.630 0.00 0.00 40.70 3.82
5843 8914 8.354426 TGCATCATTATTGATTTCATAGTGTGG 58.646 33.333 0.00 0.00 40.70 4.17
5844 8915 8.570488 GCATCATTATTGATTTCATAGTGTGGA 58.430 33.333 0.00 0.00 40.70 4.02
5847 8918 9.631257 TCATTATTGATTTCATAGTGTGGATGT 57.369 29.630 0.00 0.00 0.00 3.06
5850 8921 7.943079 ATTGATTTCATAGTGTGGATGTTGA 57.057 32.000 0.00 0.00 0.00 3.18
5851 8922 7.943079 TTGATTTCATAGTGTGGATGTTGAT 57.057 32.000 0.00 0.00 0.00 2.57
5852 8923 9.631257 ATTGATTTCATAGTGTGGATGTTGATA 57.369 29.630 0.00 0.00 0.00 2.15
5853 8924 9.631257 TTGATTTCATAGTGTGGATGTTGATAT 57.369 29.630 0.00 0.00 0.00 1.63
5854 8925 9.276590 TGATTTCATAGTGTGGATGTTGATATC 57.723 33.333 0.00 0.00 0.00 1.63
5855 8926 9.499479 GATTTCATAGTGTGGATGTTGATATCT 57.501 33.333 3.98 0.00 0.00 1.98
5856 8927 9.857656 ATTTCATAGTGTGGATGTTGATATCTT 57.142 29.630 3.98 0.00 0.00 2.40
5857 8928 9.685276 TTTCATAGTGTGGATGTTGATATCTTT 57.315 29.630 3.98 0.00 0.00 2.52
5858 8929 9.685276 TTCATAGTGTGGATGTTGATATCTTTT 57.315 29.630 3.98 0.00 0.00 2.27
5859 8930 9.330063 TCATAGTGTGGATGTTGATATCTTTTC 57.670 33.333 3.98 0.00 0.00 2.29
5860 8931 8.562892 CATAGTGTGGATGTTGATATCTTTTCC 58.437 37.037 3.98 6.04 0.00 3.13
5861 8932 6.725364 AGTGTGGATGTTGATATCTTTTCCT 58.275 36.000 3.98 0.00 0.00 3.36
5862 8933 7.861629 AGTGTGGATGTTGATATCTTTTCCTA 58.138 34.615 3.98 0.00 0.00 2.94
5863 8934 7.770897 AGTGTGGATGTTGATATCTTTTCCTAC 59.229 37.037 3.98 8.53 0.00 3.18
5864 8935 7.552687 GTGTGGATGTTGATATCTTTTCCTACA 59.447 37.037 3.98 8.97 0.00 2.74
5865 8936 8.106462 TGTGGATGTTGATATCTTTTCCTACAA 58.894 33.333 3.98 0.00 0.00 2.41
5866 8937 8.956426 GTGGATGTTGATATCTTTTCCTACAAA 58.044 33.333 3.98 0.00 0.00 2.83
5867 8938 9.177608 TGGATGTTGATATCTTTTCCTACAAAG 57.822 33.333 3.98 0.00 35.39 2.77
5868 8939 8.131731 GGATGTTGATATCTTTTCCTACAAAGC 58.868 37.037 3.98 0.00 34.26 3.51
5869 8940 8.814038 ATGTTGATATCTTTTCCTACAAAGCT 57.186 30.769 3.98 0.00 34.26 3.74
5870 8941 9.905713 ATGTTGATATCTTTTCCTACAAAGCTA 57.094 29.630 3.98 0.00 34.26 3.32
5871 8942 9.383519 TGTTGATATCTTTTCCTACAAAGCTAG 57.616 33.333 3.98 0.00 34.26 3.42
5872 8943 9.384764 GTTGATATCTTTTCCTACAAAGCTAGT 57.615 33.333 3.98 0.00 34.26 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.343421 AAGCGCACGGACGGAAAC 61.343 61.111 11.47 0.00 0.00 2.78
184 190 2.253403 AAACGGGAGCGAAGGGGATC 62.253 60.000 0.00 0.00 0.00 3.36
193 200 0.739462 TGCATACAGAAACGGGAGCG 60.739 55.000 0.00 0.00 0.00 5.03
218 225 3.760151 TGCAAGATTCACATTCCAAGAGG 59.240 43.478 0.00 0.00 0.00 3.69
314 321 6.381801 AGCTGAAAATATACAACAACTGCAC 58.618 36.000 0.00 0.00 0.00 4.57
315 322 6.430925 AGAGCTGAAAATATACAACAACTGCA 59.569 34.615 0.00 0.00 0.00 4.41
344 351 2.689553 TGGCGAGAATATGAACTGCA 57.310 45.000 0.00 0.00 0.00 4.41
388 395 3.020984 TGGGGAGAAACAGAAAACACAC 58.979 45.455 0.00 0.00 0.00 3.82
390 397 4.145052 AGATGGGGAGAAACAGAAAACAC 58.855 43.478 0.00 0.00 0.00 3.32
391 398 4.453480 AGATGGGGAGAAACAGAAAACA 57.547 40.909 0.00 0.00 0.00 2.83
392 399 7.468141 AATAAGATGGGGAGAAACAGAAAAC 57.532 36.000 0.00 0.00 0.00 2.43
822 836 0.467804 GCCAAGGCCAAAGAAACCAA 59.532 50.000 5.01 0.00 34.56 3.67
995 1009 7.795047 TCCAAGCTTCATATACTTCATCTTCA 58.205 34.615 0.00 0.00 0.00 3.02
1204 1218 7.040409 GGCAGTAAAGGTTAATCAGGAATATGG 60.040 40.741 0.00 0.00 0.00 2.74
1686 1875 2.811902 TTGAGCGCGATCATGAAAAG 57.188 45.000 29.21 0.00 0.00 2.27
1827 2016 7.840342 ACACTGAACATGCTAGAAGAAATAG 57.160 36.000 0.00 0.00 0.00 1.73
2107 2306 7.114754 AGAATGAGACATAAAGCAAAGATCCA 58.885 34.615 0.00 0.00 0.00 3.41
2183 2382 2.091541 ACTGGGACCACAATAATTGCG 58.908 47.619 0.00 0.00 0.00 4.85
2314 2514 9.988350 AACTTTAAGACAAATAGATATGTTGCG 57.012 29.630 0.00 0.00 0.00 4.85
2386 2586 8.145767 TCAAAACATGAGCATCTTGAAGATTTT 58.854 29.630 4.67 0.00 42.34 1.82
2467 2668 6.863126 GCTCAGTATTTAAAGTGTTTGCATGT 59.137 34.615 0.00 0.00 0.00 3.21
2749 2950 7.558137 CACATTTGAAGCAAAAATAGTGTGAC 58.442 34.615 13.91 0.00 39.56 3.67
2991 3197 3.096489 ACTGCACGCAATTTGAACAAT 57.904 38.095 0.00 0.00 0.00 2.71
3055 3262 1.118965 TGCCTTCCTCGTCTGTGGAA 61.119 55.000 0.00 0.00 43.57 3.53
3076 3283 7.044181 GGATGTCAGAAATGTCTACTTCATCA 58.956 38.462 14.76 0.00 32.95 3.07
3148 3355 1.781555 GTTCAGCGTGACGGTCATG 59.218 57.895 22.88 22.88 34.62 3.07
3223 3430 4.030913 AGATGAGGTTCCCTTTGTCGATA 58.969 43.478 0.00 0.00 31.76 2.92
3271 3478 0.546122 TCCAGGTGCGGAATATGCTT 59.454 50.000 0.00 0.00 29.93 3.91
3313 3520 3.053619 AGGGAAGGAGTGACTTTGTTGTT 60.054 43.478 0.00 0.00 0.00 2.83
3511 3718 0.475632 AGATGTCCTCCACCCACCAA 60.476 55.000 0.00 0.00 0.00 3.67
3706 3913 2.864946 CAGCAGAGAAATGATGGTCTCG 59.135 50.000 1.96 0.00 44.18 4.04
3790 3997 4.459089 GCCTCGTCTGACCCCAGC 62.459 72.222 1.55 0.00 40.20 4.85
3880 4087 3.812019 TTCTCGTCGGAGCTCGCC 61.812 66.667 7.83 0.00 40.26 5.54
3953 4160 1.911293 GCTTCTTCATCGCCGTTGCA 61.911 55.000 0.00 0.00 37.32 4.08
4033 4240 1.070786 GTCGACCAGCCTCACCAAA 59.929 57.895 3.51 0.00 0.00 3.28
4093 4300 3.189080 CAGTGATGGCGATGAACTTTTGA 59.811 43.478 0.00 0.00 0.00 2.69
4112 4319 2.044946 GAGGGGCGCCATTTCAGT 60.045 61.111 30.85 3.13 0.00 3.41
4197 4407 3.770933 AGTAGTCCGTAAATGGGCAAGTA 59.229 43.478 0.00 0.00 35.53 2.24
4222 4432 8.573035 CATGAACATGAACATGATCCAATCATA 58.427 33.333 22.29 2.61 43.25 2.15
4223 4433 7.069455 ACATGAACATGAACATGATCCAATCAT 59.931 33.333 28.50 14.24 44.59 2.45
4224 4434 6.378848 ACATGAACATGAACATGATCCAATCA 59.621 34.615 28.50 13.02 44.28 2.57
4269 4479 9.903682 CACATTATTTCAGTTCAAAGTTCTGAT 57.096 29.630 0.00 0.00 37.91 2.90
4318 4531 2.828520 TCTTCTTCTCGCTCTTGGTCAT 59.171 45.455 0.00 0.00 0.00 3.06
4423 4636 1.821061 AAGAGGACCTGCACGACCAG 61.821 60.000 0.00 0.00 0.00 4.00
4518 4734 1.064611 CCGTTCTCTCTGGGGAGTAGA 60.065 57.143 0.00 0.00 40.29 2.59
4521 4737 1.985116 GCCGTTCTCTCTGGGGAGT 60.985 63.158 0.00 0.00 40.29 3.85
4578 4794 3.114616 TCGTCCTCGGTCGTCGTC 61.115 66.667 2.80 0.00 40.32 4.20
4579 4795 3.418068 GTCGTCCTCGGTCGTCGT 61.418 66.667 2.80 0.00 40.32 4.34
4580 4796 4.157958 GGTCGTCCTCGGTCGTCG 62.158 72.222 2.80 0.00 40.90 5.12
4581 4797 3.036783 CTGGTCGTCCTCGGTCGTC 62.037 68.421 0.00 0.00 37.69 4.20
4638 4857 2.511600 CCGCTCATGGACCGGAAC 60.512 66.667 9.46 0.00 44.55 3.62
4899 5121 0.454600 CGAGACCCCGATCGAAGAAA 59.545 55.000 18.66 0.00 43.58 2.52
4902 5124 2.026301 GCGAGACCCCGATCGAAG 59.974 66.667 18.66 9.82 41.40 3.79
4906 5128 3.532155 AGCAGCGAGACCCCGATC 61.532 66.667 0.00 0.00 0.00 3.69
4907 5129 3.842923 CAGCAGCGAGACCCCGAT 61.843 66.667 0.00 0.00 0.00 4.18
4919 5141 0.167470 CCACACGAATTCAGCAGCAG 59.833 55.000 6.22 0.00 0.00 4.24
4920 5142 0.534877 ACCACACGAATTCAGCAGCA 60.535 50.000 6.22 0.00 0.00 4.41
4958 5212 6.879458 ACAATACACTAACTTTGAGGGTGATC 59.121 38.462 0.00 0.00 31.45 2.92
5007 5262 7.875554 GCAACCCAAAACCAGATTTTATTTCTA 59.124 33.333 0.00 0.00 38.50 2.10
5035 5290 6.429692 CACATGTAGTACCACTTTGGATCAAA 59.570 38.462 0.00 0.00 40.96 2.69
5037 5292 5.012664 ACACATGTAGTACCACTTTGGATCA 59.987 40.000 0.00 0.00 40.96 2.92
5046 5301 4.855388 CGACTAACACACATGTAGTACCAC 59.145 45.833 0.00 0.00 38.45 4.16
5052 5307 3.818387 ACGACGACTAACACACATGTAG 58.182 45.455 0.00 0.00 38.45 2.74
5053 5308 3.665060 CGACGACGACTAACACACATGTA 60.665 47.826 0.00 0.00 39.03 2.29
5054 5309 2.658285 GACGACGACTAACACACATGT 58.342 47.619 0.00 0.00 42.46 3.21
5055 5310 1.642360 CGACGACGACTAACACACATG 59.358 52.381 0.00 0.00 42.66 3.21
5056 5311 1.265095 ACGACGACGACTAACACACAT 59.735 47.619 15.32 0.00 42.66 3.21
5057 5312 0.657312 ACGACGACGACTAACACACA 59.343 50.000 15.32 0.00 42.66 3.72
5058 5313 1.312752 GACGACGACGACTAACACAC 58.687 55.000 15.32 0.00 42.66 3.82
5059 5314 0.111134 CGACGACGACGACTAACACA 60.111 55.000 15.32 0.00 42.66 3.72
5060 5315 1.384119 GCGACGACGACGACTAACAC 61.384 60.000 22.94 0.00 42.66 3.32
5061 5316 1.154599 GCGACGACGACGACTAACA 60.155 57.895 22.94 0.00 42.66 2.41
5062 5317 0.519999 ATGCGACGACGACGACTAAC 60.520 55.000 22.94 5.70 42.66 2.34
5063 5318 0.519792 CATGCGACGACGACGACTAA 60.520 55.000 22.94 5.71 42.66 2.24
5064 5319 1.059838 CATGCGACGACGACGACTA 59.940 57.895 22.94 8.76 42.66 2.59
5065 5320 2.202311 CATGCGACGACGACGACT 60.202 61.111 22.94 6.30 42.66 4.18
5066 5321 3.238241 CCATGCGACGACGACGAC 61.238 66.667 22.94 14.05 42.66 4.34
5078 5333 2.125512 ACGGAGAAGTCGCCATGC 60.126 61.111 1.90 0.00 35.39 4.06
5079 5334 4.094684 GACGGAGAAGTCGCCATG 57.905 61.111 1.90 0.00 35.39 3.66
5103 5358 4.508128 TAGCGCGGCGGAGGAAAG 62.508 66.667 25.03 0.00 0.00 2.62
5104 5359 3.592856 TTTAGCGCGGCGGAGGAAA 62.593 57.895 25.03 3.90 0.00 3.13
5105 5360 3.592856 TTTTAGCGCGGCGGAGGAA 62.593 57.895 25.03 0.00 0.00 3.36
5106 5361 4.071875 TTTTAGCGCGGCGGAGGA 62.072 61.111 25.03 0.00 0.00 3.71
5107 5362 3.564027 CTTTTAGCGCGGCGGAGG 61.564 66.667 25.03 0.00 0.00 4.30
5108 5363 4.223964 GCTTTTAGCGCGGCGGAG 62.224 66.667 25.03 0.00 0.00 4.63
5117 5372 2.785258 CGCTCCCACGCTTTTAGC 59.215 61.111 0.00 0.00 38.02 3.09
5126 5381 3.818787 CATGCAAGGCGCTCCCAC 61.819 66.667 7.64 0.00 43.06 4.61
5168 5423 0.940126 CACATGTGCGCCCTAGATTC 59.060 55.000 13.94 0.00 0.00 2.52
5176 5431 4.580044 CGCGATCACATGTGCGCC 62.580 66.667 31.47 20.00 46.04 6.53
5179 5434 1.490693 CCCTACGCGATCACATGTGC 61.491 60.000 21.38 8.41 0.00 4.57
5180 5435 0.179111 ACCCTACGCGATCACATGTG 60.179 55.000 20.18 20.18 0.00 3.21
5181 5436 0.179111 CACCCTACGCGATCACATGT 60.179 55.000 15.93 0.00 0.00 3.21
5182 5437 0.102300 TCACCCTACGCGATCACATG 59.898 55.000 15.93 3.73 0.00 3.21
5183 5438 1.000163 GATCACCCTACGCGATCACAT 60.000 52.381 15.93 0.00 36.41 3.21
5184 5439 0.384309 GATCACCCTACGCGATCACA 59.616 55.000 15.93 0.00 36.41 3.58
5185 5440 0.384309 TGATCACCCTACGCGATCAC 59.616 55.000 15.93 0.00 40.37 3.06
5186 5441 0.668535 CTGATCACCCTACGCGATCA 59.331 55.000 15.93 8.79 42.39 2.92
5188 5443 0.755698 ACCTGATCACCCTACGCGAT 60.756 55.000 15.93 0.00 0.00 4.58
5190 5445 1.226974 CACCTGATCACCCTACGCG 60.227 63.158 3.53 3.53 0.00 6.01
5191 5446 0.103208 CTCACCTGATCACCCTACGC 59.897 60.000 0.00 0.00 0.00 4.42
5192 5447 1.763968 TCTCACCTGATCACCCTACG 58.236 55.000 0.00 0.00 0.00 3.51
5193 5448 3.034635 ACATCTCACCTGATCACCCTAC 58.965 50.000 0.00 0.00 0.00 3.18
5194 5449 3.404869 ACATCTCACCTGATCACCCTA 57.595 47.619 0.00 0.00 0.00 3.53
5195 5450 2.260639 ACATCTCACCTGATCACCCT 57.739 50.000 0.00 0.00 0.00 4.34
5196 5451 2.224161 GCTACATCTCACCTGATCACCC 60.224 54.545 0.00 0.00 0.00 4.61
5197 5452 2.432146 TGCTACATCTCACCTGATCACC 59.568 50.000 0.00 0.00 0.00 4.02
5198 5453 3.808466 TGCTACATCTCACCTGATCAC 57.192 47.619 0.00 0.00 0.00 3.06
5201 5456 5.366460 CAGATTTGCTACATCTCACCTGAT 58.634 41.667 0.00 0.00 0.00 2.90
5234 5489 6.899393 AAAACTGTTGATCCTGCTATCAAA 57.101 33.333 10.08 3.27 45.05 2.69
5235 5490 6.092122 CGTAAAACTGTTGATCCTGCTATCAA 59.908 38.462 0.00 5.84 42.21 2.57
5236 5491 5.580691 CGTAAAACTGTTGATCCTGCTATCA 59.419 40.000 0.00 0.00 34.07 2.15
5237 5492 5.581085 ACGTAAAACTGTTGATCCTGCTATC 59.419 40.000 0.00 0.00 0.00 2.08
5238 5493 5.488341 ACGTAAAACTGTTGATCCTGCTAT 58.512 37.500 0.00 0.00 0.00 2.97
5239 5494 4.890088 ACGTAAAACTGTTGATCCTGCTA 58.110 39.130 0.00 0.00 0.00 3.49
5240 5495 3.740115 ACGTAAAACTGTTGATCCTGCT 58.260 40.909 0.00 0.00 0.00 4.24
5241 5496 3.423123 CGACGTAAAACTGTTGATCCTGC 60.423 47.826 0.00 0.00 0.00 4.85
5242 5497 3.423123 GCGACGTAAAACTGTTGATCCTG 60.423 47.826 0.00 0.00 0.00 3.86
5243 5498 2.735134 GCGACGTAAAACTGTTGATCCT 59.265 45.455 0.00 0.00 0.00 3.24
5244 5499 2.159747 GGCGACGTAAAACTGTTGATCC 60.160 50.000 0.00 0.00 0.00 3.36
5245 5500 2.735134 AGGCGACGTAAAACTGTTGATC 59.265 45.455 0.00 0.00 0.00 2.92
5246 5501 2.478894 CAGGCGACGTAAAACTGTTGAT 59.521 45.455 0.00 0.00 0.00 2.57
5247 5502 1.862201 CAGGCGACGTAAAACTGTTGA 59.138 47.619 0.00 0.00 0.00 3.18
5248 5503 1.659211 GCAGGCGACGTAAAACTGTTG 60.659 52.381 0.00 0.00 0.00 3.33
5249 5504 0.584876 GCAGGCGACGTAAAACTGTT 59.415 50.000 0.00 0.00 0.00 3.16
5250 5505 0.249741 AGCAGGCGACGTAAAACTGT 60.250 50.000 0.00 0.00 0.00 3.55
5251 5506 0.163788 CAGCAGGCGACGTAAAACTG 59.836 55.000 0.00 0.00 0.00 3.16
5252 5507 0.032952 TCAGCAGGCGACGTAAAACT 59.967 50.000 0.00 0.00 0.00 2.66
5253 5508 1.076332 ATCAGCAGGCGACGTAAAAC 58.924 50.000 0.00 0.00 0.00 2.43
5254 5509 1.730064 GAATCAGCAGGCGACGTAAAA 59.270 47.619 0.00 0.00 0.00 1.52
5255 5510 1.337354 TGAATCAGCAGGCGACGTAAA 60.337 47.619 0.00 0.00 0.00 2.01
5256 5511 0.245266 TGAATCAGCAGGCGACGTAA 59.755 50.000 0.00 0.00 0.00 3.18
5257 5512 0.179137 CTGAATCAGCAGGCGACGTA 60.179 55.000 0.00 0.00 32.26 3.57
5258 5513 1.446792 CTGAATCAGCAGGCGACGT 60.447 57.895 0.00 0.00 32.26 4.34
5259 5514 0.737367 TTCTGAATCAGCAGGCGACG 60.737 55.000 5.18 0.00 36.55 5.12
5260 5515 1.005340 CTTCTGAATCAGCAGGCGAC 58.995 55.000 5.18 0.00 36.55 5.19
5261 5516 0.107993 CCTTCTGAATCAGCAGGCGA 60.108 55.000 15.53 0.00 37.98 5.54
5262 5517 0.107993 TCCTTCTGAATCAGCAGGCG 60.108 55.000 21.57 2.42 42.96 5.52
5263 5518 2.220313 GATCCTTCTGAATCAGCAGGC 58.780 52.381 21.57 7.33 42.96 4.85
5264 5519 2.172082 TGGATCCTTCTGAATCAGCAGG 59.828 50.000 20.58 20.58 44.24 4.85
5265 5520 3.555527 TGGATCCTTCTGAATCAGCAG 57.444 47.619 14.23 3.95 37.24 4.24
5266 5521 4.305539 TTTGGATCCTTCTGAATCAGCA 57.694 40.909 14.23 0.00 0.00 4.41
5267 5522 4.097589 CCTTTTGGATCCTTCTGAATCAGC 59.902 45.833 14.23 0.00 44.07 4.26
5268 5523 4.643784 CCCTTTTGGATCCTTCTGAATCAG 59.356 45.833 14.23 3.38 44.07 2.90
5269 5524 4.570505 CCCCTTTTGGATCCTTCTGAATCA 60.571 45.833 14.23 0.00 44.07 2.57
5270 5525 3.956848 CCCCTTTTGGATCCTTCTGAATC 59.043 47.826 14.23 0.00 44.07 2.52
5271 5526 3.310141 CCCCCTTTTGGATCCTTCTGAAT 60.310 47.826 14.23 0.00 44.07 2.57
5272 5527 2.042979 CCCCCTTTTGGATCCTTCTGAA 59.957 50.000 14.23 0.00 44.07 3.02
5273 5528 1.640670 CCCCCTTTTGGATCCTTCTGA 59.359 52.381 14.23 0.00 44.07 3.27
5274 5529 1.359130 ACCCCCTTTTGGATCCTTCTG 59.641 52.381 14.23 0.98 44.07 3.02
5275 5530 1.773541 ACCCCCTTTTGGATCCTTCT 58.226 50.000 14.23 0.00 44.07 2.85
5276 5531 2.179427 CAACCCCCTTTTGGATCCTTC 58.821 52.381 14.23 0.00 44.07 3.46
5277 5532 1.203300 CCAACCCCCTTTTGGATCCTT 60.203 52.381 14.23 0.00 45.69 3.36
5278 5533 0.413434 CCAACCCCCTTTTGGATCCT 59.587 55.000 14.23 0.00 45.69 3.24
5279 5534 1.264749 GCCAACCCCCTTTTGGATCC 61.265 60.000 4.20 4.20 45.69 3.36
5280 5535 0.544120 TGCCAACCCCCTTTTGGATC 60.544 55.000 5.28 0.00 45.69 3.36
5281 5536 0.104725 TTGCCAACCCCCTTTTGGAT 60.105 50.000 5.28 0.00 45.69 3.41
5282 5537 0.326618 TTTGCCAACCCCCTTTTGGA 60.327 50.000 5.28 0.00 45.69 3.53
5283 5538 0.548510 TTTTGCCAACCCCCTTTTGG 59.451 50.000 0.00 0.00 45.60 3.28
5284 5539 2.426842 TTTTTGCCAACCCCCTTTTG 57.573 45.000 0.00 0.00 0.00 2.44
5371 5626 1.446272 GCCGGGAGAGACTTCGTTG 60.446 63.158 2.18 0.00 0.00 4.10
5372 5627 2.971452 GCCGGGAGAGACTTCGTT 59.029 61.111 2.18 0.00 0.00 3.85
5373 5628 3.441290 CGCCGGGAGAGACTTCGT 61.441 66.667 2.18 0.00 0.00 3.85
5374 5629 4.194720 CCGCCGGGAGAGACTTCG 62.195 72.222 2.18 0.00 34.06 3.79
5375 5630 4.516195 GCCGCCGGGAGAGACTTC 62.516 72.222 4.77 0.00 34.06 3.01
5387 5642 2.262471 CTTCATTCACAGCAGCCGCC 62.262 60.000 0.00 0.00 39.83 6.13
5397 5652 0.379669 CCAGGCGATGCTTCATTCAC 59.620 55.000 0.08 0.00 0.00 3.18
5398 5653 0.252761 TCCAGGCGATGCTTCATTCA 59.747 50.000 0.08 0.00 0.00 2.57
5399 5654 0.942962 CTCCAGGCGATGCTTCATTC 59.057 55.000 0.08 0.00 0.00 2.67
5401 5656 1.147824 CCTCCAGGCGATGCTTCAT 59.852 57.895 0.08 0.00 0.00 2.57
5402 5657 1.841302 AACCTCCAGGCGATGCTTCA 61.841 55.000 0.08 0.00 39.32 3.02
5403 5658 0.178068 TAACCTCCAGGCGATGCTTC 59.822 55.000 0.00 0.00 39.32 3.86
5427 8488 1.079612 CTGCATCACAGTCAGCGGA 60.080 57.895 0.00 0.00 41.86 5.54
5432 8493 2.046988 CCGCCTGCATCACAGTCA 60.047 61.111 0.00 0.00 45.68 3.41
5499 8570 4.554036 GATCCACTCGGGCCTGGC 62.554 72.222 12.87 11.05 36.21 4.85
5500 8571 0.833834 ATAGATCCACTCGGGCCTGG 60.834 60.000 12.87 7.13 36.21 4.45
5501 8572 1.821753 CTATAGATCCACTCGGGCCTG 59.178 57.143 4.71 4.71 36.21 4.85
5502 8573 1.893210 GCTATAGATCCACTCGGGCCT 60.893 57.143 0.84 0.00 36.21 5.19
5503 8574 0.533032 GCTATAGATCCACTCGGGCC 59.467 60.000 3.21 0.00 36.21 5.80
5504 8575 0.533032 GGCTATAGATCCACTCGGGC 59.467 60.000 3.21 0.00 36.21 6.13
5505 8576 2.223803 AGGCTATAGATCCACTCGGG 57.776 55.000 3.21 0.00 38.37 5.14
5506 8577 3.127203 CGTTAGGCTATAGATCCACTCGG 59.873 52.174 3.21 0.00 0.00 4.63
5507 8578 4.001652 TCGTTAGGCTATAGATCCACTCG 58.998 47.826 3.21 3.08 0.00 4.18
5508 8579 5.220700 CGATCGTTAGGCTATAGATCCACTC 60.221 48.000 22.78 9.21 35.56 3.51
5509 8580 4.636648 CGATCGTTAGGCTATAGATCCACT 59.363 45.833 22.78 0.00 35.56 4.00
5510 8581 4.201930 CCGATCGTTAGGCTATAGATCCAC 60.202 50.000 22.78 7.04 35.56 4.02
5511 8582 3.945921 CCGATCGTTAGGCTATAGATCCA 59.054 47.826 22.78 0.00 35.56 3.41
5512 8583 4.197750 TCCGATCGTTAGGCTATAGATCC 58.802 47.826 22.78 12.42 35.56 3.36
5513 8584 5.527951 TCATCCGATCGTTAGGCTATAGATC 59.472 44.000 20.67 20.67 35.61 2.75
5514 8585 5.437946 TCATCCGATCGTTAGGCTATAGAT 58.562 41.667 15.09 10.72 0.00 1.98
5515 8586 4.840271 TCATCCGATCGTTAGGCTATAGA 58.160 43.478 15.09 0.00 0.00 1.98
5516 8587 5.562506 TTCATCCGATCGTTAGGCTATAG 57.437 43.478 15.09 0.00 0.00 1.31
5517 8588 6.152154 TCAATTCATCCGATCGTTAGGCTATA 59.848 38.462 15.09 0.00 0.00 1.31
5518 8589 5.047306 TCAATTCATCCGATCGTTAGGCTAT 60.047 40.000 15.09 0.00 0.00 2.97
5519 8590 4.279922 TCAATTCATCCGATCGTTAGGCTA 59.720 41.667 15.09 0.00 0.00 3.93
5520 8591 3.069586 TCAATTCATCCGATCGTTAGGCT 59.930 43.478 15.09 0.00 0.00 4.58
5521 8592 3.390135 TCAATTCATCCGATCGTTAGGC 58.610 45.455 15.09 0.00 0.00 3.93
5522 8593 4.871513 TCTCAATTCATCCGATCGTTAGG 58.128 43.478 15.09 3.65 0.00 2.69
5523 8594 5.763088 TCTCTCAATTCATCCGATCGTTAG 58.237 41.667 15.09 2.95 0.00 2.34
5524 8595 5.767816 TCTCTCAATTCATCCGATCGTTA 57.232 39.130 15.09 1.72 0.00 3.18
5525 8596 4.655762 TCTCTCAATTCATCCGATCGTT 57.344 40.909 15.09 0.00 0.00 3.85
5526 8597 4.279420 TGATCTCTCAATTCATCCGATCGT 59.721 41.667 15.09 0.00 31.04 3.73
5527 8598 4.802999 TGATCTCTCAATTCATCCGATCG 58.197 43.478 8.51 8.51 31.04 3.69
5528 8599 6.346439 CGTTTGATCTCTCAATTCATCCGATC 60.346 42.308 0.00 0.00 40.95 3.69
5529 8600 5.464722 CGTTTGATCTCTCAATTCATCCGAT 59.535 40.000 0.00 0.00 40.95 4.18
5530 8601 4.805719 CGTTTGATCTCTCAATTCATCCGA 59.194 41.667 0.00 0.00 40.95 4.55
5531 8602 4.025396 CCGTTTGATCTCTCAATTCATCCG 60.025 45.833 0.00 0.00 40.95 4.18
5532 8603 4.274459 CCCGTTTGATCTCTCAATTCATCC 59.726 45.833 0.00 0.00 40.95 3.51
5533 8604 5.118990 TCCCGTTTGATCTCTCAATTCATC 58.881 41.667 0.00 0.00 40.95 2.92
5534 8605 5.102953 TCCCGTTTGATCTCTCAATTCAT 57.897 39.130 0.00 0.00 40.95 2.57
5535 8606 4.551702 TCCCGTTTGATCTCTCAATTCA 57.448 40.909 0.00 0.00 40.95 2.57
5536 8607 5.880054 TTTCCCGTTTGATCTCTCAATTC 57.120 39.130 0.00 0.00 40.95 2.17
5537 8608 6.840780 AATTTCCCGTTTGATCTCTCAATT 57.159 33.333 0.00 0.00 40.95 2.32
5538 8609 7.067494 CCTTAATTTCCCGTTTGATCTCTCAAT 59.933 37.037 0.00 0.00 40.95 2.57
5539 8610 6.374333 CCTTAATTTCCCGTTTGATCTCTCAA 59.626 38.462 0.00 0.00 39.62 3.02
5540 8611 5.880332 CCTTAATTTCCCGTTTGATCTCTCA 59.120 40.000 0.00 0.00 0.00 3.27
5541 8612 5.220873 GCCTTAATTTCCCGTTTGATCTCTC 60.221 44.000 0.00 0.00 0.00 3.20
5542 8613 4.640647 GCCTTAATTTCCCGTTTGATCTCT 59.359 41.667 0.00 0.00 0.00 3.10
5543 8614 4.640647 AGCCTTAATTTCCCGTTTGATCTC 59.359 41.667 0.00 0.00 0.00 2.75
5544 8615 4.600062 AGCCTTAATTTCCCGTTTGATCT 58.400 39.130 0.00 0.00 0.00 2.75
5545 8616 4.983671 AGCCTTAATTTCCCGTTTGATC 57.016 40.909 0.00 0.00 0.00 2.92
5546 8617 4.081697 CCAAGCCTTAATTTCCCGTTTGAT 60.082 41.667 0.00 0.00 0.00 2.57
5547 8618 3.257127 CCAAGCCTTAATTTCCCGTTTGA 59.743 43.478 0.00 0.00 0.00 2.69
5548 8619 3.257127 TCCAAGCCTTAATTTCCCGTTTG 59.743 43.478 0.00 0.00 0.00 2.93
5549 8620 3.502356 TCCAAGCCTTAATTTCCCGTTT 58.498 40.909 0.00 0.00 0.00 3.60
5550 8621 3.163616 TCCAAGCCTTAATTTCCCGTT 57.836 42.857 0.00 0.00 0.00 4.44
5551 8622 2.891191 TCCAAGCCTTAATTTCCCGT 57.109 45.000 0.00 0.00 0.00 5.28
5552 8623 2.623416 GGATCCAAGCCTTAATTTCCCG 59.377 50.000 6.95 0.00 0.00 5.14
5553 8624 2.623416 CGGATCCAAGCCTTAATTTCCC 59.377 50.000 13.41 0.00 0.00 3.97
5554 8625 2.623416 CCGGATCCAAGCCTTAATTTCC 59.377 50.000 13.41 0.00 0.00 3.13
5555 8626 3.551846 TCCGGATCCAAGCCTTAATTTC 58.448 45.455 13.41 0.00 0.00 2.17
5556 8627 3.662759 TCCGGATCCAAGCCTTAATTT 57.337 42.857 13.41 0.00 0.00 1.82
5557 8628 3.884037 ATCCGGATCCAAGCCTTAATT 57.116 42.857 12.38 0.00 0.00 1.40
5558 8629 3.884037 AATCCGGATCCAAGCCTTAAT 57.116 42.857 19.43 0.00 0.00 1.40
5559 8630 3.662759 AAATCCGGATCCAAGCCTTAA 57.337 42.857 19.43 0.00 0.00 1.85
5560 8631 4.993705 ATAAATCCGGATCCAAGCCTTA 57.006 40.909 19.43 11.05 0.00 2.69
5561 8632 3.884037 ATAAATCCGGATCCAAGCCTT 57.116 42.857 19.43 8.99 0.00 4.35
5562 8633 3.264450 CCTATAAATCCGGATCCAAGCCT 59.736 47.826 19.43 0.00 0.00 4.58
5563 8634 3.610911 CCTATAAATCCGGATCCAAGCC 58.389 50.000 19.43 0.00 0.00 4.35
5564 8635 3.263425 TCCCTATAAATCCGGATCCAAGC 59.737 47.826 19.43 0.00 0.00 4.01
5565 8636 5.013183 AGTTCCCTATAAATCCGGATCCAAG 59.987 44.000 19.43 12.56 0.00 3.61
5566 8637 4.911522 AGTTCCCTATAAATCCGGATCCAA 59.088 41.667 19.43 6.60 0.00 3.53
5567 8638 4.499472 AGTTCCCTATAAATCCGGATCCA 58.501 43.478 19.43 9.02 0.00 3.41
5568 8639 6.408206 CCATAGTTCCCTATAAATCCGGATCC 60.408 46.154 19.43 0.00 32.49 3.36
5569 8640 6.156429 ACCATAGTTCCCTATAAATCCGGATC 59.844 42.308 19.43 0.36 32.49 3.36
5570 8641 6.030082 ACCATAGTTCCCTATAAATCCGGAT 58.970 40.000 12.38 12.38 32.49 4.18
5571 8642 5.247564 CACCATAGTTCCCTATAAATCCGGA 59.752 44.000 6.61 6.61 32.49 5.14
5572 8643 5.012768 ACACCATAGTTCCCTATAAATCCGG 59.987 44.000 0.00 0.00 32.49 5.14
5573 8644 6.110411 ACACCATAGTTCCCTATAAATCCG 57.890 41.667 0.00 0.00 32.49 4.18
5574 8645 7.970102 TGTACACCATAGTTCCCTATAAATCC 58.030 38.462 0.00 0.00 32.49 3.01
5575 8646 8.648693 ACTGTACACCATAGTTCCCTATAAATC 58.351 37.037 0.00 0.00 32.49 2.17
5576 8647 8.562949 ACTGTACACCATAGTTCCCTATAAAT 57.437 34.615 0.00 0.00 32.49 1.40
5577 8648 7.983166 ACTGTACACCATAGTTCCCTATAAA 57.017 36.000 0.00 0.00 32.49 1.40
5580 8651 9.256228 CATATACTGTACACCATAGTTCCCTAT 57.744 37.037 0.00 0.00 34.07 2.57
5581 8652 8.229605 ACATATACTGTACACCATAGTTCCCTA 58.770 37.037 0.00 0.00 35.91 3.53
5582 8653 7.073854 ACATATACTGTACACCATAGTTCCCT 58.926 38.462 0.00 0.00 35.91 4.20
5583 8654 7.299246 ACATATACTGTACACCATAGTTCCC 57.701 40.000 0.00 0.00 35.91 3.97
5584 8655 9.042008 CAAACATATACTGTACACCATAGTTCC 57.958 37.037 0.00 0.00 36.98 3.62
5585 8656 9.595823 ACAAACATATACTGTACACCATAGTTC 57.404 33.333 0.00 0.00 36.98 3.01
5588 8659 9.193133 GCTACAAACATATACTGTACACCATAG 57.807 37.037 0.00 0.00 36.98 2.23
5589 8660 8.145767 GGCTACAAACATATACTGTACACCATA 58.854 37.037 0.00 0.00 36.98 2.74
5590 8661 6.990349 GGCTACAAACATATACTGTACACCAT 59.010 38.462 0.00 0.00 36.98 3.55
5591 8662 6.155565 AGGCTACAAACATATACTGTACACCA 59.844 38.462 0.00 0.00 36.98 4.17
5592 8663 6.579865 AGGCTACAAACATATACTGTACACC 58.420 40.000 0.00 0.00 36.98 4.16
5593 8664 7.490000 AGAGGCTACAAACATATACTGTACAC 58.510 38.462 0.00 0.00 36.98 2.90
5594 8665 7.655521 AGAGGCTACAAACATATACTGTACA 57.344 36.000 0.00 0.00 36.98 2.90
5595 8666 7.438459 CCAAGAGGCTACAAACATATACTGTAC 59.562 40.741 0.00 0.00 36.98 2.90
5596 8667 7.497595 CCAAGAGGCTACAAACATATACTGTA 58.502 38.462 0.00 0.00 36.98 2.74
5597 8668 6.349300 CCAAGAGGCTACAAACATATACTGT 58.651 40.000 0.00 0.00 40.84 3.55
5598 8669 6.851222 CCAAGAGGCTACAAACATATACTG 57.149 41.667 0.00 0.00 0.00 2.74
5614 8685 2.276732 TCTCCAAGTTTGCCAAGAGG 57.723 50.000 0.00 0.00 38.23 3.69
5615 8686 5.964958 TTATTCTCCAAGTTTGCCAAGAG 57.035 39.130 0.00 0.00 0.00 2.85
5616 8687 7.888021 TCTTATTATTCTCCAAGTTTGCCAAGA 59.112 33.333 0.00 0.00 0.00 3.02
5617 8688 8.055279 TCTTATTATTCTCCAAGTTTGCCAAG 57.945 34.615 0.00 0.00 0.00 3.61
5618 8689 8.593945 ATCTTATTATTCTCCAAGTTTGCCAA 57.406 30.769 0.00 0.00 0.00 4.52
5619 8690 9.120538 GTATCTTATTATTCTCCAAGTTTGCCA 57.879 33.333 0.00 0.00 0.00 4.92
5620 8691 9.343539 AGTATCTTATTATTCTCCAAGTTTGCC 57.656 33.333 0.00 0.00 0.00 4.52
5628 8699 9.756571 GAGGGAGTAGTATCTTATTATTCTCCA 57.243 37.037 0.00 0.00 40.16 3.86
5629 8700 9.192642 GGAGGGAGTAGTATCTTATTATTCTCC 57.807 40.741 0.00 0.00 38.41 3.71
5630 8701 8.895737 CGGAGGGAGTAGTATCTTATTATTCTC 58.104 40.741 0.00 0.00 0.00 2.87
5631 8702 8.392479 ACGGAGGGAGTAGTATCTTATTATTCT 58.608 37.037 0.00 0.00 0.00 2.40
5632 8703 8.578448 ACGGAGGGAGTAGTATCTTATTATTC 57.422 38.462 0.00 0.00 0.00 1.75
5633 8704 8.953223 AACGGAGGGAGTAGTATCTTATTATT 57.047 34.615 0.00 0.00 0.00 1.40
5634 8705 7.614974 GGAACGGAGGGAGTAGTATCTTATTAT 59.385 40.741 0.00 0.00 0.00 1.28
5635 8706 6.944862 GGAACGGAGGGAGTAGTATCTTATTA 59.055 42.308 0.00 0.00 0.00 0.98
5636 8707 5.774184 GGAACGGAGGGAGTAGTATCTTATT 59.226 44.000 0.00 0.00 0.00 1.40
5637 8708 5.163012 TGGAACGGAGGGAGTAGTATCTTAT 60.163 44.000 0.00 0.00 0.00 1.73
5638 8709 4.166725 TGGAACGGAGGGAGTAGTATCTTA 59.833 45.833 0.00 0.00 0.00 2.10
5639 8710 3.053095 TGGAACGGAGGGAGTAGTATCTT 60.053 47.826 0.00 0.00 0.00 2.40
5640 8711 2.512896 TGGAACGGAGGGAGTAGTATCT 59.487 50.000 0.00 0.00 0.00 1.98
5641 8712 2.941480 TGGAACGGAGGGAGTAGTATC 58.059 52.381 0.00 0.00 0.00 2.24
5642 8713 3.393426 TTGGAACGGAGGGAGTAGTAT 57.607 47.619 0.00 0.00 0.00 2.12
5643 8714 2.905415 TTGGAACGGAGGGAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
5644 8715 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
5645 8716 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
5646 8717 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5647 8718 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5648 8719 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5649 8720 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5650 8721 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5651 8722 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5652 8723 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5653 8724 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5654 8725 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5655 8726 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5656 8727 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5657 8728 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
5658 8729 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
5659 8730 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
5663 8734 9.440761 AGAGAGTATAAAGTTGGGTCATCTATT 57.559 33.333 0.00 0.00 0.00 1.73
5664 8735 9.084533 GAGAGAGTATAAAGTTGGGTCATCTAT 57.915 37.037 0.00 0.00 0.00 1.98
5665 8736 7.506261 GGAGAGAGTATAAAGTTGGGTCATCTA 59.494 40.741 0.00 0.00 0.00 1.98
5666 8737 6.325286 GGAGAGAGTATAAAGTTGGGTCATCT 59.675 42.308 0.00 0.00 0.00 2.90
5667 8738 6.517605 GGAGAGAGTATAAAGTTGGGTCATC 58.482 44.000 0.00 0.00 0.00 2.92
5668 8739 5.069251 CGGAGAGAGTATAAAGTTGGGTCAT 59.931 44.000 0.00 0.00 0.00 3.06
5669 8740 4.401519 CGGAGAGAGTATAAAGTTGGGTCA 59.598 45.833 0.00 0.00 0.00 4.02
5670 8741 4.401837 ACGGAGAGAGTATAAAGTTGGGTC 59.598 45.833 0.00 0.00 0.00 4.46
5671 8742 4.351127 ACGGAGAGAGTATAAAGTTGGGT 58.649 43.478 0.00 0.00 0.00 4.51
5672 8743 5.340439 AACGGAGAGAGTATAAAGTTGGG 57.660 43.478 0.00 0.00 0.00 4.12
5673 8744 6.631962 AGAAACGGAGAGAGTATAAAGTTGG 58.368 40.000 0.00 0.00 0.00 3.77
5674 8745 8.535690 AAAGAAACGGAGAGAGTATAAAGTTG 57.464 34.615 0.00 0.00 0.00 3.16
5675 8746 9.557061 AAAAAGAAACGGAGAGAGTATAAAGTT 57.443 29.630 0.00 0.00 0.00 2.66
5679 8750 9.852091 GACTAAAAAGAAACGGAGAGAGTATAA 57.148 33.333 0.00 0.00 0.00 0.98
5680 8751 8.465201 GGACTAAAAAGAAACGGAGAGAGTATA 58.535 37.037 0.00 0.00 0.00 1.47
5681 8752 7.321908 GGACTAAAAAGAAACGGAGAGAGTAT 58.678 38.462 0.00 0.00 0.00 2.12
5682 8753 6.569226 CGGACTAAAAAGAAACGGAGAGAGTA 60.569 42.308 0.00 0.00 0.00 2.59
5683 8754 5.539979 GGACTAAAAAGAAACGGAGAGAGT 58.460 41.667 0.00 0.00 0.00 3.24
5684 8755 4.621886 CGGACTAAAAAGAAACGGAGAGAG 59.378 45.833 0.00 0.00 0.00 3.20
5685 8756 4.553323 CGGACTAAAAAGAAACGGAGAGA 58.447 43.478 0.00 0.00 0.00 3.10
5686 8757 3.123116 GCGGACTAAAAAGAAACGGAGAG 59.877 47.826 0.00 0.00 0.00 3.20
5687 8758 3.062042 GCGGACTAAAAAGAAACGGAGA 58.938 45.455 0.00 0.00 0.00 3.71
5688 8759 2.803956 TGCGGACTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
5689 8760 2.836262 TGCGGACTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
5690 8761 3.824414 ATGCGGACTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
5691 8762 7.902032 TCTTATATGCGGACTAAAAAGAAACG 58.098 34.615 0.00 0.00 0.00 3.60
5695 8766 8.836413 CCAAATCTTATATGCGGACTAAAAAGA 58.164 33.333 0.00 0.00 0.00 2.52
5696 8767 8.621286 ACCAAATCTTATATGCGGACTAAAAAG 58.379 33.333 0.00 0.00 0.00 2.27
5697 8768 8.514330 ACCAAATCTTATATGCGGACTAAAAA 57.486 30.769 0.00 0.00 0.00 1.94
5698 8769 7.771361 TGACCAAATCTTATATGCGGACTAAAA 59.229 33.333 0.00 0.00 0.00 1.52
5699 8770 7.276658 TGACCAAATCTTATATGCGGACTAAA 58.723 34.615 0.00 0.00 0.00 1.85
5700 8771 6.822442 TGACCAAATCTTATATGCGGACTAA 58.178 36.000 0.00 0.00 0.00 2.24
5701 8772 6.413783 TGACCAAATCTTATATGCGGACTA 57.586 37.500 0.00 0.00 0.00 2.59
5702 8773 5.290493 TGACCAAATCTTATATGCGGACT 57.710 39.130 0.00 0.00 0.00 3.85
5703 8774 6.038271 ACTTTGACCAAATCTTATATGCGGAC 59.962 38.462 0.00 0.00 0.00 4.79
5704 8775 6.119536 ACTTTGACCAAATCTTATATGCGGA 58.880 36.000 0.00 0.00 0.00 5.54
5705 8776 6.038161 TGACTTTGACCAAATCTTATATGCGG 59.962 38.462 0.00 0.00 0.00 5.69
5706 8777 7.015226 TGACTTTGACCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
5707 8778 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
5815 8886 9.908152 ACACTATGAAATCAATAATGATGCATG 57.092 29.630 2.46 9.84 45.60 4.06
5816 8887 9.908152 CACACTATGAAATCAATAATGATGCAT 57.092 29.630 0.00 0.00 45.60 3.96
5817 8888 8.354426 CCACACTATGAAATCAATAATGATGCA 58.646 33.333 0.00 0.00 45.60 3.96
5818 8889 8.570488 TCCACACTATGAAATCAATAATGATGC 58.430 33.333 0.00 0.00 45.60 3.91
5821 8892 9.631257 ACATCCACACTATGAAATCAATAATGA 57.369 29.630 0.00 0.00 40.57 2.57
5824 8895 9.460019 TCAACATCCACACTATGAAATCAATAA 57.540 29.630 0.00 0.00 0.00 1.40
5825 8896 9.631257 ATCAACATCCACACTATGAAATCAATA 57.369 29.630 0.00 0.00 0.00 1.90
5826 8897 7.943079 TCAACATCCACACTATGAAATCAAT 57.057 32.000 0.00 0.00 0.00 2.57
5827 8898 7.943079 ATCAACATCCACACTATGAAATCAA 57.057 32.000 0.00 0.00 0.00 2.57
5828 8899 9.276590 GATATCAACATCCACACTATGAAATCA 57.723 33.333 0.00 0.00 0.00 2.57
5829 8900 9.499479 AGATATCAACATCCACACTATGAAATC 57.501 33.333 5.32 0.00 0.00 2.17
5830 8901 9.857656 AAGATATCAACATCCACACTATGAAAT 57.142 29.630 5.32 0.00 0.00 2.17
5831 8902 9.685276 AAAGATATCAACATCCACACTATGAAA 57.315 29.630 5.32 0.00 0.00 2.69
5832 8903 9.685276 AAAAGATATCAACATCCACACTATGAA 57.315 29.630 5.32 0.00 0.00 2.57
5833 8904 9.330063 GAAAAGATATCAACATCCACACTATGA 57.670 33.333 5.32 0.00 0.00 2.15
5834 8905 8.562892 GGAAAAGATATCAACATCCACACTATG 58.437 37.037 5.32 0.00 0.00 2.23
5835 8906 8.497745 AGGAAAAGATATCAACATCCACACTAT 58.502 33.333 5.32 0.00 0.00 2.12
5836 8907 7.861629 AGGAAAAGATATCAACATCCACACTA 58.138 34.615 5.32 0.00 0.00 2.74
5837 8908 6.725364 AGGAAAAGATATCAACATCCACACT 58.275 36.000 5.32 0.00 0.00 3.55
5838 8909 7.552687 TGTAGGAAAAGATATCAACATCCACAC 59.447 37.037 5.32 9.15 0.00 3.82
5839 8910 7.629157 TGTAGGAAAAGATATCAACATCCACA 58.371 34.615 5.32 10.27 0.00 4.17
5840 8911 8.506168 TTGTAGGAAAAGATATCAACATCCAC 57.494 34.615 5.32 8.31 0.00 4.02
5841 8912 9.177608 CTTTGTAGGAAAAGATATCAACATCCA 57.822 33.333 5.32 0.00 39.12 3.41
5842 8913 8.131731 GCTTTGTAGGAAAAGATATCAACATCC 58.868 37.037 5.32 7.06 39.12 3.51
5843 8914 8.897752 AGCTTTGTAGGAAAAGATATCAACATC 58.102 33.333 5.32 0.00 39.12 3.06
5844 8915 8.814038 AGCTTTGTAGGAAAAGATATCAACAT 57.186 30.769 5.32 0.00 39.12 2.71
5845 8916 9.383519 CTAGCTTTGTAGGAAAAGATATCAACA 57.616 33.333 5.32 0.00 37.39 3.33
5846 8917 9.384764 ACTAGCTTTGTAGGAAAAGATATCAAC 57.615 33.333 5.32 0.00 37.39 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.