Multiple sequence alignment - TraesCS5D01G082700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G082700 chr5D 100.000 3107 0 0 1 3107 84679033 84682139 0.000000e+00 5738.0
1 TraesCS5D01G082700 chr5D 97.810 137 3 0 2971 3107 449649515 449649379 1.440000e-58 237.0
2 TraesCS5D01G082700 chr5B 90.788 2486 138 42 530 2951 91532074 91534532 0.000000e+00 3238.0
3 TraesCS5D01G082700 chr5A 93.061 1614 67 14 576 2153 79151968 79153572 0.000000e+00 2318.0
4 TraesCS5D01G082700 chr5A 87.089 790 38 30 2226 2961 79153613 79154392 0.000000e+00 835.0
5 TraesCS5D01G082700 chr6D 97.955 538 10 1 1 537 423432617 423432080 0.000000e+00 931.0
6 TraesCS5D01G082700 chr6D 97.774 539 11 1 1 538 11162884 11163422 0.000000e+00 928.0
7 TraesCS5D01G082700 chr6D 97.584 538 12 1 1 537 340563181 340562644 0.000000e+00 920.0
8 TraesCS5D01G082700 chr7D 97.952 537 10 1 1 536 435508244 435508780 0.000000e+00 929.0
9 TraesCS5D01G082700 chr7D 97.059 544 15 1 1 543 163628382 163628925 0.000000e+00 915.0
10 TraesCS5D01G082700 chr2D 97.770 538 11 1 1 537 487267005 487266468 0.000000e+00 926.0
11 TraesCS5D01G082700 chr4D 97.765 537 11 1 1 536 183193621 183193085 0.000000e+00 924.0
12 TraesCS5D01G082700 chr4D 97.584 538 12 1 1 537 185959826 185959289 0.000000e+00 920.0
13 TraesCS5D01G082700 chr4D 77.857 140 17 10 1714 1840 52215711 52215849 1.190000e-09 75.0
14 TraesCS5D01G082700 chr3D 97.584 538 12 1 1 537 288046253 288046790 0.000000e+00 920.0
15 TraesCS5D01G082700 chr1D 98.540 137 2 0 2971 3107 195998391 195998527 3.100000e-60 243.0
16 TraesCS5D01G082700 chrUn 95.973 149 5 1 2960 3107 26237952 26238100 1.110000e-59 241.0
17 TraesCS5D01G082700 chrUn 97.761 134 3 0 2971 3104 276762651 276762784 6.700000e-57 231.0
18 TraesCS5D01G082700 chr7B 95.238 147 7 0 2961 3107 717896050 717895904 1.860000e-57 233.0
19 TraesCS5D01G082700 chr7B 97.080 137 4 0 2971 3107 611230326 611230190 6.700000e-57 231.0
20 TraesCS5D01G082700 chr3B 97.015 134 4 0 2971 3104 684415673 684415806 3.120000e-55 226.0
21 TraesCS5D01G082700 chr2B 97.015 134 4 0 2971 3104 64621929 64622062 3.120000e-55 226.0
22 TraesCS5D01G082700 chr2B 96.269 134 5 0 2971 3104 64704602 64704735 1.450000e-53 220.0
23 TraesCS5D01G082700 chr4A 95.556 45 2 0 1714 1758 544397696 544397740 4.300000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G082700 chr5D 84679033 84682139 3106 False 5738.0 5738 100.000 1 3107 1 chr5D.!!$F1 3106
1 TraesCS5D01G082700 chr5B 91532074 91534532 2458 False 3238.0 3238 90.788 530 2951 1 chr5B.!!$F1 2421
2 TraesCS5D01G082700 chr5A 79151968 79154392 2424 False 1576.5 2318 90.075 576 2961 2 chr5A.!!$F1 2385
3 TraesCS5D01G082700 chr6D 423432080 423432617 537 True 931.0 931 97.955 1 537 1 chr6D.!!$R2 536
4 TraesCS5D01G082700 chr6D 11162884 11163422 538 False 928.0 928 97.774 1 538 1 chr6D.!!$F1 537
5 TraesCS5D01G082700 chr6D 340562644 340563181 537 True 920.0 920 97.584 1 537 1 chr6D.!!$R1 536
6 TraesCS5D01G082700 chr7D 435508244 435508780 536 False 929.0 929 97.952 1 536 1 chr7D.!!$F2 535
7 TraesCS5D01G082700 chr7D 163628382 163628925 543 False 915.0 915 97.059 1 543 1 chr7D.!!$F1 542
8 TraesCS5D01G082700 chr2D 487266468 487267005 537 True 926.0 926 97.770 1 537 1 chr2D.!!$R1 536
9 TraesCS5D01G082700 chr4D 183193085 183193621 536 True 924.0 924 97.765 1 536 1 chr4D.!!$R1 535
10 TraesCS5D01G082700 chr4D 185959289 185959826 537 True 920.0 920 97.584 1 537 1 chr4D.!!$R2 536
11 TraesCS5D01G082700 chr3D 288046253 288046790 537 False 920.0 920 97.584 1 537 1 chr3D.!!$F1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 556 1.446792 CACACCACTGCGCTCTAGG 60.447 63.158 9.73 8.12 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2405 2497 0.031585 ACACTTGCAAGCTACGACGA 59.968 50.0 26.27 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 1.668101 GCCGAGGTGGAGATCGAAGT 61.668 60.000 0.00 0.00 41.40 3.01
129 130 3.632604 GGTGGAGATCGAAGTGATGTCTA 59.367 47.826 0.00 0.00 44.66 2.59
211 212 4.201695 CGAAGATTGTGTCAGCAAGAGATG 60.202 45.833 0.00 0.00 0.00 2.90
500 502 4.202388 GGTAGGGGTACAAAACTGACTTGA 60.202 45.833 0.00 0.00 0.00 3.02
544 546 4.212716 TGACTACTCTAACACACACCACT 58.787 43.478 0.00 0.00 0.00 4.00
554 556 1.446792 CACACCACTGCGCTCTAGG 60.447 63.158 9.73 8.12 0.00 3.02
887 897 4.230657 GTCCAATGTCTTCTATCCGATCG 58.769 47.826 8.51 8.51 0.00 3.69
889 899 2.620779 ATGTCTTCTATCCGATCGCG 57.379 50.000 10.32 0.00 37.24 5.87
959 971 3.551846 TCCCTTCCTTTTCAACAGTCAC 58.448 45.455 0.00 0.00 0.00 3.67
1009 1021 0.178533 CGCCCCTCCCGTATAAAACA 59.821 55.000 0.00 0.00 0.00 2.83
1105 1120 4.997395 TCTTCAGGTGTGCAAGAAAGATAC 59.003 41.667 0.00 0.00 0.00 2.24
1133 1148 0.465824 GAGCTCTGATTGGCATGGCT 60.466 55.000 21.08 3.80 37.07 4.75
1201 1216 1.067821 CAAGGAGATGGAGGCGTCTAC 59.932 57.143 6.34 0.00 0.00 2.59
1907 1934 9.998106 GGGTAGAATCTGCTGATTAATTAGTTA 57.002 33.333 17.66 0.00 42.43 2.24
1931 1958 9.878667 TTAGTGTGCATAACTGTTTATAGCTTA 57.121 29.630 13.64 0.00 0.00 3.09
1932 1959 8.964476 AGTGTGCATAACTGTTTATAGCTTAT 57.036 30.769 0.00 0.00 0.00 1.73
1933 1960 9.396022 AGTGTGCATAACTGTTTATAGCTTATT 57.604 29.630 0.00 0.00 0.00 1.40
1958 1985 3.263937 TGGTGATGAGTGATGACCATTGA 59.736 43.478 0.00 0.00 42.87 2.57
1959 1986 4.080186 TGGTGATGAGTGATGACCATTGAT 60.080 41.667 0.00 0.00 42.87 2.57
1960 1987 4.885907 GGTGATGAGTGATGACCATTGATT 59.114 41.667 0.00 0.00 38.20 2.57
1961 1988 5.008415 GGTGATGAGTGATGACCATTGATTC 59.992 44.000 0.00 0.00 38.20 2.52
2079 2119 6.536941 AGCTCGTTTAGAAGGATTGATTCTTC 59.463 38.462 4.18 4.18 38.05 2.87
2109 2149 6.127758 GGTTTGTGTGTGCTTATCCATGAATA 60.128 38.462 0.00 0.00 0.00 1.75
2188 2257 9.559958 CACTGATCTTGGTTAATTTGTTGATAC 57.440 33.333 0.00 0.00 0.00 2.24
2216 2285 2.380084 ACATATGTCGACTTTGCGGT 57.620 45.000 17.92 4.84 0.00 5.68
2222 2291 0.863144 GTCGACTTTGCGGTTGCTTA 59.137 50.000 8.70 0.00 43.34 3.09
2234 2303 2.690786 GGTTGCTTACCATACGTGTCA 58.309 47.619 0.00 0.00 46.92 3.58
2264 2336 1.594862 GTGAATAGCTCATGCACGGTC 59.405 52.381 0.00 0.00 42.74 4.79
2390 2482 1.694639 CTTAGCAAGCAAGCAAGCAC 58.305 50.000 10.52 0.00 36.85 4.40
2408 2500 3.566261 CTTGCATTGCGAGGTCGT 58.434 55.556 16.87 0.00 42.22 4.34
2438 2534 2.205074 CAAGTGTGCGTTCTCAGTCTT 58.795 47.619 0.00 0.00 0.00 3.01
2453 2549 2.481568 CAGTCTTCAGTGACCGTACGTA 59.518 50.000 15.21 0.00 37.66 3.57
2454 2550 2.481952 AGTCTTCAGTGACCGTACGTAC 59.518 50.000 15.90 15.90 37.66 3.67
2499 2611 3.718434 AGGGAGAATGATGTGCTTATCCA 59.282 43.478 0.00 0.00 0.00 3.41
2562 2675 0.320946 GTGCTGCCCGTGGTTAGTTA 60.321 55.000 0.00 0.00 0.00 2.24
2566 2679 2.618053 CTGCCCGTGGTTAGTTAGAAG 58.382 52.381 0.00 0.00 0.00 2.85
2577 2690 1.160137 AGTTAGAAGCCGACGTACGT 58.840 50.000 23.04 23.04 40.78 3.57
2578 2691 2.346803 AGTTAGAAGCCGACGTACGTA 58.653 47.619 22.87 0.00 40.78 3.57
2579 2692 2.094417 AGTTAGAAGCCGACGTACGTAC 59.906 50.000 22.87 15.90 40.78 3.67
2621 2734 2.427232 AACAAGCATGCATGTGTGTC 57.573 45.000 27.49 13.53 0.00 3.67
2694 2811 1.279152 CGCTTGTGAGAGATGAGCAG 58.721 55.000 0.00 0.00 33.07 4.24
2717 2842 2.092323 TCGATCGATCACCAAGACACT 58.908 47.619 24.40 0.00 0.00 3.55
2762 2887 4.363990 CCGCACCAGCTCGACACT 62.364 66.667 0.00 0.00 39.10 3.55
2763 2888 2.566529 CGCACCAGCTCGACACTA 59.433 61.111 0.00 0.00 39.10 2.74
2764 2889 1.139734 CGCACCAGCTCGACACTAT 59.860 57.895 0.00 0.00 39.10 2.12
2765 2890 0.380733 CGCACCAGCTCGACACTATA 59.619 55.000 0.00 0.00 39.10 1.31
2860 2985 7.227992 ACTATAAGAACACGTACGTACTCTC 57.772 40.000 22.34 14.24 0.00 3.20
2891 3029 1.505425 GTGTGGACACGTTAACCTCC 58.495 55.000 0.00 2.62 37.10 4.30
2934 3073 3.512219 TTTAGGGACGAAACCATGGTT 57.488 42.857 24.86 24.86 40.45 3.67
2961 3100 1.000385 CCACAACAAACACGCATGGAT 60.000 47.619 0.00 0.00 0.00 3.41
2962 3101 2.545532 CCACAACAAACACGCATGGATT 60.546 45.455 0.00 0.00 0.00 3.01
2963 3102 3.122297 CACAACAAACACGCATGGATTT 58.878 40.909 0.00 0.00 0.00 2.17
2964 3103 3.555139 CACAACAAACACGCATGGATTTT 59.445 39.130 0.00 0.00 0.00 1.82
2965 3104 4.033817 CACAACAAACACGCATGGATTTTT 59.966 37.500 0.00 0.00 0.00 1.94
2987 3126 5.692613 TTTTTAGTCAATTACACCGGTGG 57.307 39.130 36.47 19.50 34.19 4.61
2988 3127 4.354893 TTTAGTCAATTACACCGGTGGT 57.645 40.909 36.47 23.92 35.62 4.16
2997 3136 2.915869 ACCGGTGGTGCTTGAACT 59.084 55.556 6.12 0.00 32.98 3.01
2998 3137 1.226262 ACCGGTGGTGCTTGAACTT 59.774 52.632 6.12 0.00 32.98 2.66
2999 3138 1.101049 ACCGGTGGTGCTTGAACTTG 61.101 55.000 6.12 0.00 32.98 3.16
3000 3139 1.654220 CGGTGGTGCTTGAACTTGG 59.346 57.895 0.00 0.00 0.00 3.61
3001 3140 1.363807 GGTGGTGCTTGAACTTGGC 59.636 57.895 0.00 0.00 0.00 4.52
3002 3141 1.008538 GTGGTGCTTGAACTTGGCG 60.009 57.895 0.00 0.00 0.00 5.69
3003 3142 1.453015 TGGTGCTTGAACTTGGCGT 60.453 52.632 0.00 0.00 0.00 5.68
3004 3143 0.179043 TGGTGCTTGAACTTGGCGTA 60.179 50.000 0.00 0.00 0.00 4.42
3005 3144 0.948678 GGTGCTTGAACTTGGCGTAA 59.051 50.000 0.00 0.00 0.00 3.18
3006 3145 1.335496 GGTGCTTGAACTTGGCGTAAA 59.665 47.619 0.00 0.00 0.00 2.01
3007 3146 2.381589 GTGCTTGAACTTGGCGTAAAC 58.618 47.619 0.00 0.00 0.00 2.01
3008 3147 1.003331 TGCTTGAACTTGGCGTAAACG 60.003 47.619 0.00 0.00 43.27 3.60
3009 3148 1.262151 GCTTGAACTTGGCGTAAACGA 59.738 47.619 6.71 0.00 43.02 3.85
3010 3149 2.095919 GCTTGAACTTGGCGTAAACGAT 60.096 45.455 6.71 0.00 43.02 3.73
3011 3150 3.732943 CTTGAACTTGGCGTAAACGATC 58.267 45.455 6.71 0.00 43.02 3.69
3012 3151 2.756829 TGAACTTGGCGTAAACGATCA 58.243 42.857 6.71 0.93 43.02 2.92
3013 3152 2.477375 TGAACTTGGCGTAAACGATCAC 59.523 45.455 6.71 0.00 43.02 3.06
3014 3153 2.450609 ACTTGGCGTAAACGATCACT 57.549 45.000 6.71 0.00 43.02 3.41
3015 3154 2.762745 ACTTGGCGTAAACGATCACTT 58.237 42.857 6.71 0.00 43.02 3.16
3016 3155 3.135994 ACTTGGCGTAAACGATCACTTT 58.864 40.909 6.71 0.00 43.02 2.66
3017 3156 4.309099 ACTTGGCGTAAACGATCACTTTA 58.691 39.130 6.71 0.00 43.02 1.85
3018 3157 4.387862 ACTTGGCGTAAACGATCACTTTAG 59.612 41.667 6.71 1.49 43.02 1.85
3019 3158 3.916761 TGGCGTAAACGATCACTTTAGT 58.083 40.909 6.71 0.00 43.02 2.24
3020 3159 3.676172 TGGCGTAAACGATCACTTTAGTG 59.324 43.478 6.71 3.47 43.83 2.74
3021 3160 3.676646 GGCGTAAACGATCACTTTAGTGT 59.323 43.478 6.71 0.00 43.34 3.55
3022 3161 4.151157 GGCGTAAACGATCACTTTAGTGTT 59.849 41.667 6.71 1.69 43.34 3.32
3023 3162 5.345741 GGCGTAAACGATCACTTTAGTGTTA 59.654 40.000 6.71 0.00 43.34 2.41
3024 3163 6.453396 GGCGTAAACGATCACTTTAGTGTTAG 60.453 42.308 6.71 4.97 43.34 2.34
3025 3164 6.306356 GCGTAAACGATCACTTTAGTGTTAGA 59.694 38.462 6.71 0.00 43.34 2.10
3026 3165 7.148918 GCGTAAACGATCACTTTAGTGTTAGAA 60.149 37.037 6.71 0.00 43.34 2.10
3027 3166 8.152159 CGTAAACGATCACTTTAGTGTTAGAAC 58.848 37.037 9.53 4.01 43.34 3.01
3028 3167 9.189723 GTAAACGATCACTTTAGTGTTAGAACT 57.810 33.333 9.53 0.00 45.76 3.01
3029 3168 8.658499 AAACGATCACTTTAGTGTTAGAACTT 57.342 30.769 9.53 0.00 45.76 2.66
3030 3169 7.639162 ACGATCACTTTAGTGTTAGAACTTG 57.361 36.000 9.53 0.00 45.76 3.16
3031 3170 7.208080 ACGATCACTTTAGTGTTAGAACTTGT 58.792 34.615 9.53 0.00 45.76 3.16
3032 3171 7.169308 ACGATCACTTTAGTGTTAGAACTTGTG 59.831 37.037 9.53 0.00 45.76 3.33
3033 3172 7.359264 CGATCACTTTAGTGTTAGAACTTGTGG 60.359 40.741 9.53 0.00 45.76 4.17
3034 3173 5.526111 TCACTTTAGTGTTAGAACTTGTGGC 59.474 40.000 9.53 0.00 45.76 5.01
3035 3174 5.295787 CACTTTAGTGTTAGAACTTGTGGCA 59.704 40.000 1.69 0.00 40.96 4.92
3036 3175 6.017109 CACTTTAGTGTTAGAACTTGTGGCAT 60.017 38.462 1.69 0.00 40.96 4.40
3037 3176 7.172532 CACTTTAGTGTTAGAACTTGTGGCATA 59.827 37.037 1.69 0.00 40.96 3.14
3038 3177 7.172703 ACTTTAGTGTTAGAACTTGTGGCATAC 59.827 37.037 0.00 0.00 0.00 2.39
3039 3178 4.968259 AGTGTTAGAACTTGTGGCATACA 58.032 39.130 0.00 0.00 37.56 2.29
3040 3179 5.560724 AGTGTTAGAACTTGTGGCATACAT 58.439 37.500 0.00 0.00 39.48 2.29
3041 3180 6.003950 AGTGTTAGAACTTGTGGCATACATT 58.996 36.000 0.00 0.00 39.48 2.71
3042 3181 6.072508 AGTGTTAGAACTTGTGGCATACATTG 60.073 38.462 0.00 0.00 39.48 2.82
3043 3182 6.000840 TGTTAGAACTTGTGGCATACATTGA 58.999 36.000 0.00 0.00 39.48 2.57
3044 3183 6.488344 TGTTAGAACTTGTGGCATACATTGAA 59.512 34.615 0.00 0.00 39.48 2.69
3045 3184 5.376854 AGAACTTGTGGCATACATTGAAC 57.623 39.130 0.00 0.00 39.48 3.18
3046 3185 5.072741 AGAACTTGTGGCATACATTGAACT 58.927 37.500 0.00 0.00 39.48 3.01
3047 3186 4.771590 ACTTGTGGCATACATTGAACTG 57.228 40.909 0.00 0.00 39.48 3.16
3048 3187 3.507233 ACTTGTGGCATACATTGAACTGG 59.493 43.478 0.00 0.00 39.48 4.00
3049 3188 3.153369 TGTGGCATACATTGAACTGGT 57.847 42.857 0.00 0.00 33.42 4.00
3050 3189 2.819019 TGTGGCATACATTGAACTGGTG 59.181 45.455 0.00 0.00 33.42 4.17
3051 3190 1.818060 TGGCATACATTGAACTGGTGC 59.182 47.619 0.00 0.00 33.65 5.01
3052 3191 1.818060 GGCATACATTGAACTGGTGCA 59.182 47.619 0.00 0.00 35.11 4.57
3053 3192 2.230992 GGCATACATTGAACTGGTGCAA 59.769 45.455 0.00 0.00 35.11 4.08
3054 3193 3.119029 GGCATACATTGAACTGGTGCAAT 60.119 43.478 1.36 1.36 35.11 3.56
3055 3194 4.097741 GGCATACATTGAACTGGTGCAATA 59.902 41.667 6.62 0.00 35.11 1.90
3056 3195 5.394005 GGCATACATTGAACTGGTGCAATAA 60.394 40.000 6.62 0.19 35.11 1.40
3057 3196 5.516339 GCATACATTGAACTGGTGCAATAAC 59.484 40.000 6.62 0.00 33.68 1.89
3058 3197 6.625740 GCATACATTGAACTGGTGCAATAACT 60.626 38.462 6.62 0.00 33.68 2.24
3059 3198 5.789643 ACATTGAACTGGTGCAATAACTT 57.210 34.783 6.62 0.00 33.68 2.66
3060 3199 5.531634 ACATTGAACTGGTGCAATAACTTG 58.468 37.500 6.62 0.00 33.68 3.16
3061 3200 4.582701 TTGAACTGGTGCAATAACTTGG 57.417 40.909 0.00 0.00 32.72 3.61
3062 3201 2.295909 TGAACTGGTGCAATAACTTGGC 59.704 45.455 0.00 0.00 32.72 4.52
3063 3202 2.292828 ACTGGTGCAATAACTTGGCT 57.707 45.000 0.00 0.00 32.72 4.75
3064 3203 2.162681 ACTGGTGCAATAACTTGGCTC 58.837 47.619 0.00 0.00 32.72 4.70
3065 3204 1.131126 CTGGTGCAATAACTTGGCTCG 59.869 52.381 0.00 0.00 32.72 5.03
3066 3205 0.451783 GGTGCAATAACTTGGCTCGG 59.548 55.000 0.00 0.00 32.72 4.63
3067 3206 1.165270 GTGCAATAACTTGGCTCGGT 58.835 50.000 0.00 0.00 32.72 4.69
3068 3207 1.539827 GTGCAATAACTTGGCTCGGTT 59.460 47.619 0.00 0.00 32.72 4.44
3069 3208 1.539388 TGCAATAACTTGGCTCGGTTG 59.461 47.619 0.00 0.00 32.72 3.77
3070 3209 1.539827 GCAATAACTTGGCTCGGTTGT 59.460 47.619 0.00 0.00 32.72 3.32
3071 3210 2.668279 GCAATAACTTGGCTCGGTTGTG 60.668 50.000 0.00 0.00 32.72 3.33
3072 3211 1.165270 ATAACTTGGCTCGGTTGTGC 58.835 50.000 0.00 0.00 0.00 4.57
3073 3212 0.179043 TAACTTGGCTCGGTTGTGCA 60.179 50.000 0.00 0.00 36.33 4.57
3074 3213 1.034838 AACTTGGCTCGGTTGTGCAA 61.035 50.000 0.00 0.00 36.33 4.08
3075 3214 1.034838 ACTTGGCTCGGTTGTGCAAA 61.035 50.000 0.00 0.00 36.33 3.68
3076 3215 0.314935 CTTGGCTCGGTTGTGCAAAT 59.685 50.000 0.00 0.00 36.33 2.32
3077 3216 1.539388 CTTGGCTCGGTTGTGCAAATA 59.461 47.619 0.00 0.00 36.33 1.40
3078 3217 0.878416 TGGCTCGGTTGTGCAAATAC 59.122 50.000 0.00 0.00 36.33 1.89
3079 3218 0.179200 GGCTCGGTTGTGCAAATACG 60.179 55.000 0.00 0.00 36.33 3.06
3080 3219 0.179200 GCTCGGTTGTGCAAATACGG 60.179 55.000 0.00 0.00 34.77 4.02
3081 3220 1.153353 CTCGGTTGTGCAAATACGGT 58.847 50.000 0.00 0.00 0.00 4.83
3082 3221 1.127951 CTCGGTTGTGCAAATACGGTC 59.872 52.381 0.00 0.00 0.00 4.79
3083 3222 0.167251 CGGTTGTGCAAATACGGTCC 59.833 55.000 0.00 0.00 0.00 4.46
3084 3223 1.530323 GGTTGTGCAAATACGGTCCT 58.470 50.000 0.00 0.00 0.00 3.85
3085 3224 2.702261 GGTTGTGCAAATACGGTCCTA 58.298 47.619 0.00 0.00 0.00 2.94
3086 3225 3.075884 GGTTGTGCAAATACGGTCCTAA 58.924 45.455 0.00 0.00 0.00 2.69
3087 3226 3.692593 GGTTGTGCAAATACGGTCCTAAT 59.307 43.478 0.00 0.00 0.00 1.73
3088 3227 4.201881 GGTTGTGCAAATACGGTCCTAATC 60.202 45.833 0.00 0.00 0.00 1.75
3089 3228 3.191669 TGTGCAAATACGGTCCTAATCG 58.808 45.455 0.00 0.00 0.00 3.34
3090 3229 2.033151 GTGCAAATACGGTCCTAATCGC 60.033 50.000 0.00 0.00 0.00 4.58
3091 3230 1.191647 GCAAATACGGTCCTAATCGCG 59.808 52.381 0.00 0.00 0.00 5.87
3092 3231 2.466846 CAAATACGGTCCTAATCGCGT 58.533 47.619 5.77 0.00 0.00 6.01
3093 3232 3.631144 CAAATACGGTCCTAATCGCGTA 58.369 45.455 5.77 0.00 0.00 4.42
3094 3233 4.232221 CAAATACGGTCCTAATCGCGTAT 58.768 43.478 5.77 0.00 0.00 3.06
3095 3234 2.975410 TACGGTCCTAATCGCGTATG 57.025 50.000 5.77 0.00 0.00 2.39
3096 3235 0.313043 ACGGTCCTAATCGCGTATGG 59.687 55.000 5.77 4.91 0.00 2.74
3097 3236 0.594602 CGGTCCTAATCGCGTATGGA 59.405 55.000 5.77 7.39 0.00 3.41
3098 3237 1.201647 CGGTCCTAATCGCGTATGGAT 59.798 52.381 5.77 0.00 0.00 3.41
3099 3238 2.421073 CGGTCCTAATCGCGTATGGATA 59.579 50.000 5.77 0.00 0.00 2.59
3100 3239 3.487042 CGGTCCTAATCGCGTATGGATAG 60.487 52.174 5.77 5.04 0.00 2.08
3101 3240 3.181489 GGTCCTAATCGCGTATGGATAGG 60.181 52.174 5.77 10.13 0.00 2.57
3102 3241 3.693085 GTCCTAATCGCGTATGGATAGGA 59.307 47.826 5.77 12.17 0.00 2.94
3103 3242 4.157289 GTCCTAATCGCGTATGGATAGGAA 59.843 45.833 18.29 7.30 34.67 3.36
3104 3243 4.398358 TCCTAATCGCGTATGGATAGGAAG 59.602 45.833 5.77 0.00 30.40 3.46
3105 3244 4.158025 CCTAATCGCGTATGGATAGGAAGT 59.842 45.833 5.77 0.00 0.00 3.01
3106 3245 3.851976 ATCGCGTATGGATAGGAAGTC 57.148 47.619 5.77 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 7.320399 CACAACTACTACCATTGTAGACATCA 58.680 38.462 10.77 0.00 46.18 3.07
129 130 2.614481 CGCCCACAACTACTACCATTGT 60.614 50.000 0.00 0.00 37.02 2.71
211 212 3.499737 CATCCTCGCCGCACCAAC 61.500 66.667 0.00 0.00 0.00 3.77
468 470 2.645320 TGTACCCCTACCCCAAATTGA 58.355 47.619 0.00 0.00 0.00 2.57
470 472 4.140639 AGTTTTGTACCCCTACCCCAAATT 60.141 41.667 0.00 0.00 0.00 1.82
472 474 2.790585 AGTTTTGTACCCCTACCCCAAA 59.209 45.455 0.00 0.00 0.00 3.28
500 502 9.352191 AGTCATTATGGTATACGACTTCTAGTT 57.648 33.333 3.78 0.00 29.68 2.24
887 897 0.385098 GAACACACTAAAACGGGCGC 60.385 55.000 0.00 0.00 0.00 6.53
889 899 1.310904 TGGAACACACTAAAACGGGC 58.689 50.000 0.00 0.00 0.00 6.13
959 971 2.111932 TAGCAAAACGTGTGCGCCTG 62.112 55.000 16.30 0.00 46.86 4.85
1105 1120 1.010935 AATCAGAGCTCACGTGCGTG 61.011 55.000 17.77 17.44 46.64 5.34
1133 1148 0.250295 CTTCAAGAACCGCCTCCACA 60.250 55.000 0.00 0.00 0.00 4.17
1201 1216 1.787057 CGCCTCCTCGCTGGTACTAG 61.787 65.000 1.08 1.08 37.07 2.57
1879 1906 8.153550 ACTAATTAATCAGCAGATTCTACCCTG 58.846 37.037 7.71 0.00 43.26 4.45
1907 1934 8.964476 ATAAGCTATAAACAGTTATGCACACT 57.036 30.769 0.00 0.00 32.10 3.55
1931 1958 6.005066 TGGTCATCACTCATCACCAATAAT 57.995 37.500 0.00 0.00 31.35 1.28
1932 1959 5.434182 TGGTCATCACTCATCACCAATAA 57.566 39.130 0.00 0.00 31.35 1.40
1933 1960 5.635278 ATGGTCATCACTCATCACCAATA 57.365 39.130 0.00 0.00 39.49 1.90
1934 1961 4.515028 ATGGTCATCACTCATCACCAAT 57.485 40.909 0.00 0.00 39.49 3.16
1935 1962 4.011698 CAATGGTCATCACTCATCACCAA 58.988 43.478 0.00 0.00 39.49 3.67
1943 1970 6.688637 TGAATGAATCAATGGTCATCACTC 57.311 37.500 0.00 0.00 33.31 3.51
1959 1986 9.093970 CCTACTTTACATACACGAATGAATGAA 57.906 33.333 0.00 0.00 0.00 2.57
1960 1987 8.471609 TCCTACTTTACATACACGAATGAATGA 58.528 33.333 0.00 0.00 0.00 2.57
1961 1988 8.642908 TCCTACTTTACATACACGAATGAATG 57.357 34.615 0.00 0.00 0.00 2.67
2062 2102 6.973642 ACCAATGGAAGAATCAATCCTTCTA 58.026 36.000 6.16 0.00 38.92 2.10
2079 2119 2.600470 AAGCACACACAAACCAATGG 57.400 45.000 0.00 0.00 0.00 3.16
2158 2198 9.743057 CAACAAATTAACCAAGATCAGTGTTAA 57.257 29.630 12.90 12.90 37.52 2.01
2160 2200 8.006298 TCAACAAATTAACCAAGATCAGTGTT 57.994 30.769 0.00 0.00 0.00 3.32
2161 2201 7.581213 TCAACAAATTAACCAAGATCAGTGT 57.419 32.000 0.00 0.00 0.00 3.55
2162 2202 9.559958 GTATCAACAAATTAACCAAGATCAGTG 57.440 33.333 0.00 0.00 0.00 3.66
2163 2203 9.295825 TGTATCAACAAATTAACCAAGATCAGT 57.704 29.630 0.00 0.00 30.91 3.41
2188 2257 7.946768 CGCAAAGTCGACATATGTAAGATAATG 59.053 37.037 19.50 11.55 0.00 1.90
2191 2260 5.918576 CCGCAAAGTCGACATATGTAAGATA 59.081 40.000 19.50 0.00 0.00 1.98
2193 2262 4.109766 CCGCAAAGTCGACATATGTAAGA 58.890 43.478 19.50 8.79 0.00 2.10
2195 2264 3.852286 ACCGCAAAGTCGACATATGTAA 58.148 40.909 19.50 0.00 0.00 2.41
2200 2269 0.793861 GCAACCGCAAAGTCGACATA 59.206 50.000 19.50 0.00 38.36 2.29
2203 2272 0.863144 TAAGCAACCGCAAAGTCGAC 59.137 50.000 7.70 7.70 42.27 4.20
2216 2285 2.028476 AGCTGACACGTATGGTAAGCAA 60.028 45.455 14.47 0.00 34.06 3.91
2390 2482 1.970917 GACGACCTCGCAATGCAAGG 61.971 60.000 11.21 11.21 44.43 3.61
2401 2493 0.388134 TTGCAAGCTACGACGACCTC 60.388 55.000 0.00 0.00 0.00 3.85
2402 2494 0.388649 CTTGCAAGCTACGACGACCT 60.389 55.000 14.65 0.00 0.00 3.85
2403 2495 0.666577 ACTTGCAAGCTACGACGACC 60.667 55.000 26.27 0.00 0.00 4.79
2404 2496 0.435008 CACTTGCAAGCTACGACGAC 59.565 55.000 26.27 0.00 0.00 4.34
2405 2497 0.031585 ACACTTGCAAGCTACGACGA 59.968 50.000 26.27 0.00 0.00 4.20
2406 2498 0.161658 CACACTTGCAAGCTACGACG 59.838 55.000 26.27 8.51 0.00 5.12
2453 2549 0.319900 ATCTGCTGTTTCAGACGCGT 60.320 50.000 13.85 13.85 44.88 6.01
2454 2550 0.368227 GATCTGCTGTTTCAGACGCG 59.632 55.000 3.53 3.53 44.88 6.01
2455 2551 0.368227 CGATCTGCTGTTTCAGACGC 59.632 55.000 0.66 0.00 44.88 5.19
2456 2552 1.916651 CTCGATCTGCTGTTTCAGACG 59.083 52.381 0.66 3.32 44.88 4.18
2499 2611 2.287769 GCAACCAAACCAATTTGCACT 58.712 42.857 0.40 0.00 43.38 4.40
2551 2664 2.257034 GTCGGCTTCTAACTAACCACG 58.743 52.381 0.00 0.00 0.00 4.94
2562 2675 1.421485 CGTACGTACGTCGGCTTCT 59.579 57.895 33.95 0.00 44.13 2.85
2577 2690 2.283298 CCGTCTACTAACTCAGCCGTA 58.717 52.381 0.00 0.00 0.00 4.02
2578 2691 1.093159 CCGTCTACTAACTCAGCCGT 58.907 55.000 0.00 0.00 0.00 5.68
2579 2692 0.248539 GCCGTCTACTAACTCAGCCG 60.249 60.000 0.00 0.00 0.00 5.52
2580 2693 1.104630 AGCCGTCTACTAACTCAGCC 58.895 55.000 0.00 0.00 0.00 4.85
2581 2694 5.008415 TGTTATAGCCGTCTACTAACTCAGC 59.992 44.000 7.08 0.00 0.00 4.26
2582 2695 6.615264 TGTTATAGCCGTCTACTAACTCAG 57.385 41.667 7.08 0.00 0.00 3.35
2583 2696 6.459298 GCTTGTTATAGCCGTCTACTAACTCA 60.459 42.308 7.08 0.00 35.06 3.41
2584 2697 5.914074 GCTTGTTATAGCCGTCTACTAACTC 59.086 44.000 7.08 0.00 35.06 3.01
2586 2699 5.585390 TGCTTGTTATAGCCGTCTACTAAC 58.415 41.667 0.00 0.00 40.49 2.34
2587 2700 5.840243 TGCTTGTTATAGCCGTCTACTAA 57.160 39.130 0.00 0.00 40.49 2.24
2694 2811 0.385751 TCTTGGTGATCGATCGAGGC 59.614 55.000 23.84 17.48 0.00 4.70
2860 2985 3.579709 GTGTCCACACATGTGTCTAGAG 58.420 50.000 28.38 16.40 45.75 2.43
2886 3024 3.820425 TCCAAAGGCGATGGAGGT 58.180 55.556 9.81 0.00 41.98 3.85
2891 3029 8.647143 AAAAACATAATTATCCAAAGGCGATG 57.353 30.769 0.00 0.00 0.00 3.84
2934 3073 2.927014 GCGTGTTTGTTGTGGGTTTTGA 60.927 45.455 0.00 0.00 0.00 2.69
2965 3104 5.131784 ACCACCGGTGTAATTGACTAAAAA 58.868 37.500 31.80 0.00 32.98 1.94
2966 3105 4.716794 ACCACCGGTGTAATTGACTAAAA 58.283 39.130 31.80 0.00 32.98 1.52
2967 3106 4.354893 ACCACCGGTGTAATTGACTAAA 57.645 40.909 31.80 0.00 32.98 1.85
2980 3119 1.101049 CAAGTTCAAGCACCACCGGT 61.101 55.000 0.00 0.00 35.62 5.28
2981 3120 1.654220 CAAGTTCAAGCACCACCGG 59.346 57.895 0.00 0.00 0.00 5.28
2982 3121 1.654220 CCAAGTTCAAGCACCACCG 59.346 57.895 0.00 0.00 0.00 4.94
2983 3122 1.363807 GCCAAGTTCAAGCACCACC 59.636 57.895 0.00 0.00 0.00 4.61
2984 3123 1.008538 CGCCAAGTTCAAGCACCAC 60.009 57.895 0.00 0.00 0.00 4.16
2985 3124 0.179043 TACGCCAAGTTCAAGCACCA 60.179 50.000 0.00 0.00 0.00 4.17
2986 3125 0.948678 TTACGCCAAGTTCAAGCACC 59.051 50.000 0.00 0.00 0.00 5.01
2987 3126 2.381589 GTTTACGCCAAGTTCAAGCAC 58.618 47.619 0.00 0.00 0.00 4.40
2988 3127 1.003331 CGTTTACGCCAAGTTCAAGCA 60.003 47.619 0.00 0.00 0.00 3.91
2989 3128 1.262151 TCGTTTACGCCAAGTTCAAGC 59.738 47.619 0.00 0.00 39.60 4.01
2990 3129 3.185594 TGATCGTTTACGCCAAGTTCAAG 59.814 43.478 0.00 0.00 39.60 3.02
2991 3130 3.059461 GTGATCGTTTACGCCAAGTTCAA 60.059 43.478 0.00 0.00 39.60 2.69
2992 3131 2.477375 GTGATCGTTTACGCCAAGTTCA 59.523 45.455 0.00 0.00 39.60 3.18
2993 3132 2.735134 AGTGATCGTTTACGCCAAGTTC 59.265 45.455 0.00 0.00 39.60 3.01
2994 3133 2.762745 AGTGATCGTTTACGCCAAGTT 58.237 42.857 0.00 0.00 39.60 2.66
2995 3134 2.450609 AGTGATCGTTTACGCCAAGT 57.549 45.000 0.00 0.00 39.60 3.16
2996 3135 3.806316 AAAGTGATCGTTTACGCCAAG 57.194 42.857 0.00 0.00 39.60 3.61
2997 3136 4.309099 ACTAAAGTGATCGTTTACGCCAA 58.691 39.130 0.00 0.00 39.60 4.52
2998 3137 3.916761 ACTAAAGTGATCGTTTACGCCA 58.083 40.909 0.00 0.00 39.60 5.69
3012 3151 5.433526 TGCCACAAGTTCTAACACTAAAGT 58.566 37.500 0.00 0.00 0.00 2.66
3013 3152 6.560253 ATGCCACAAGTTCTAACACTAAAG 57.440 37.500 0.00 0.00 0.00 1.85
3014 3153 6.993308 TGTATGCCACAAGTTCTAACACTAAA 59.007 34.615 0.00 0.00 32.95 1.85
3015 3154 6.526526 TGTATGCCACAAGTTCTAACACTAA 58.473 36.000 0.00 0.00 32.95 2.24
3016 3155 6.104146 TGTATGCCACAAGTTCTAACACTA 57.896 37.500 0.00 0.00 32.95 2.74
3017 3156 4.968259 TGTATGCCACAAGTTCTAACACT 58.032 39.130 0.00 0.00 32.95 3.55
3018 3157 5.880054 ATGTATGCCACAAGTTCTAACAC 57.120 39.130 0.00 0.00 41.55 3.32
3019 3158 6.000840 TCAATGTATGCCACAAGTTCTAACA 58.999 36.000 0.00 0.00 41.55 2.41
3020 3159 6.494893 TCAATGTATGCCACAAGTTCTAAC 57.505 37.500 0.00 0.00 41.55 2.34
3021 3160 6.714810 AGTTCAATGTATGCCACAAGTTCTAA 59.285 34.615 0.00 0.00 41.55 2.10
3022 3161 6.149308 CAGTTCAATGTATGCCACAAGTTCTA 59.851 38.462 0.00 0.00 41.55 2.10
3023 3162 5.048504 CAGTTCAATGTATGCCACAAGTTCT 60.049 40.000 0.00 0.00 41.55 3.01
3024 3163 5.156355 CAGTTCAATGTATGCCACAAGTTC 58.844 41.667 0.00 0.00 41.55 3.01
3025 3164 4.022068 CCAGTTCAATGTATGCCACAAGTT 60.022 41.667 0.00 0.00 41.55 2.66
3026 3165 3.507233 CCAGTTCAATGTATGCCACAAGT 59.493 43.478 0.00 0.00 41.55 3.16
3027 3166 3.507233 ACCAGTTCAATGTATGCCACAAG 59.493 43.478 0.00 0.00 41.55 3.16
3028 3167 3.255395 CACCAGTTCAATGTATGCCACAA 59.745 43.478 0.00 0.00 41.55 3.33
3029 3168 2.819019 CACCAGTTCAATGTATGCCACA 59.181 45.455 0.00 0.00 42.69 4.17
3030 3169 2.415893 GCACCAGTTCAATGTATGCCAC 60.416 50.000 0.00 0.00 0.00 5.01
3031 3170 1.818060 GCACCAGTTCAATGTATGCCA 59.182 47.619 0.00 0.00 0.00 4.92
3032 3171 1.818060 TGCACCAGTTCAATGTATGCC 59.182 47.619 0.00 0.00 32.26 4.40
3033 3172 3.574284 TTGCACCAGTTCAATGTATGC 57.426 42.857 0.00 0.00 33.30 3.14
3034 3173 6.855836 AGTTATTGCACCAGTTCAATGTATG 58.144 36.000 6.01 0.00 34.95 2.39
3035 3174 7.315142 CAAGTTATTGCACCAGTTCAATGTAT 58.685 34.615 6.01 0.00 34.95 2.29
3036 3175 6.294453 CCAAGTTATTGCACCAGTTCAATGTA 60.294 38.462 6.01 0.00 34.95 2.29
3037 3176 5.509501 CCAAGTTATTGCACCAGTTCAATGT 60.510 40.000 6.01 0.00 34.95 2.71
3038 3177 4.925054 CCAAGTTATTGCACCAGTTCAATG 59.075 41.667 6.01 0.00 34.95 2.82
3039 3178 4.561326 GCCAAGTTATTGCACCAGTTCAAT 60.561 41.667 1.47 1.47 36.87 2.57
3040 3179 3.243704 GCCAAGTTATTGCACCAGTTCAA 60.244 43.478 0.00 0.00 34.91 2.69
3041 3180 2.295909 GCCAAGTTATTGCACCAGTTCA 59.704 45.455 0.00 0.00 34.91 3.18
3042 3181 2.558359 AGCCAAGTTATTGCACCAGTTC 59.442 45.455 0.00 0.00 34.91 3.01
3043 3182 2.558359 GAGCCAAGTTATTGCACCAGTT 59.442 45.455 0.00 0.00 34.91 3.16
3044 3183 2.162681 GAGCCAAGTTATTGCACCAGT 58.837 47.619 0.00 0.00 34.91 4.00
3045 3184 1.131126 CGAGCCAAGTTATTGCACCAG 59.869 52.381 0.00 0.00 34.91 4.00
3046 3185 1.164411 CGAGCCAAGTTATTGCACCA 58.836 50.000 0.00 0.00 34.91 4.17
3047 3186 0.451783 CCGAGCCAAGTTATTGCACC 59.548 55.000 0.00 0.00 34.91 5.01
3048 3187 1.165270 ACCGAGCCAAGTTATTGCAC 58.835 50.000 0.00 0.00 34.91 4.57
3049 3188 1.539388 CAACCGAGCCAAGTTATTGCA 59.461 47.619 0.00 0.00 34.91 4.08
3050 3189 1.539827 ACAACCGAGCCAAGTTATTGC 59.460 47.619 0.00 0.00 34.91 3.56
3051 3190 2.668279 GCACAACCGAGCCAAGTTATTG 60.668 50.000 0.00 0.00 36.09 1.90
3052 3191 1.539827 GCACAACCGAGCCAAGTTATT 59.460 47.619 0.00 0.00 0.00 1.40
3053 3192 1.165270 GCACAACCGAGCCAAGTTAT 58.835 50.000 0.00 0.00 0.00 1.89
3054 3193 0.179043 TGCACAACCGAGCCAAGTTA 60.179 50.000 0.00 0.00 0.00 2.24
3055 3194 1.034838 TTGCACAACCGAGCCAAGTT 61.035 50.000 0.00 0.00 0.00 2.66
3056 3195 1.034838 TTTGCACAACCGAGCCAAGT 61.035 50.000 0.00 0.00 0.00 3.16
3057 3196 0.314935 ATTTGCACAACCGAGCCAAG 59.685 50.000 0.00 0.00 0.00 3.61
3058 3197 1.268352 GTATTTGCACAACCGAGCCAA 59.732 47.619 0.00 0.00 0.00 4.52
3059 3198 0.878416 GTATTTGCACAACCGAGCCA 59.122 50.000 0.00 0.00 0.00 4.75
3060 3199 0.179200 CGTATTTGCACAACCGAGCC 60.179 55.000 0.00 0.00 0.00 4.70
3061 3200 0.179200 CCGTATTTGCACAACCGAGC 60.179 55.000 0.00 0.00 0.00 5.03
3062 3201 1.127951 GACCGTATTTGCACAACCGAG 59.872 52.381 0.00 0.00 0.00 4.63
3063 3202 1.149987 GACCGTATTTGCACAACCGA 58.850 50.000 0.00 0.00 0.00 4.69
3064 3203 0.167251 GGACCGTATTTGCACAACCG 59.833 55.000 0.00 0.00 0.00 4.44
3065 3204 1.530323 AGGACCGTATTTGCACAACC 58.470 50.000 0.00 0.00 0.00 3.77
3066 3205 4.493545 CGATTAGGACCGTATTTGCACAAC 60.494 45.833 0.00 0.00 0.00 3.32
3067 3206 3.619483 CGATTAGGACCGTATTTGCACAA 59.381 43.478 0.00 0.00 0.00 3.33
3068 3207 3.191669 CGATTAGGACCGTATTTGCACA 58.808 45.455 0.00 0.00 0.00 4.57
3069 3208 2.033151 GCGATTAGGACCGTATTTGCAC 60.033 50.000 0.00 0.00 0.00 4.57
3070 3209 2.206750 GCGATTAGGACCGTATTTGCA 58.793 47.619 0.00 0.00 0.00 4.08
3071 3210 1.191647 CGCGATTAGGACCGTATTTGC 59.808 52.381 0.00 0.00 0.00 3.68
3072 3211 2.466846 ACGCGATTAGGACCGTATTTG 58.533 47.619 15.93 0.00 31.43 2.32
3073 3212 2.877043 ACGCGATTAGGACCGTATTT 57.123 45.000 15.93 0.00 31.43 1.40
3074 3213 3.366679 CCATACGCGATTAGGACCGTATT 60.367 47.826 15.93 0.00 42.81 1.89
3075 3214 2.163010 CCATACGCGATTAGGACCGTAT 59.837 50.000 15.93 0.00 44.74 3.06
3076 3215 1.536766 CCATACGCGATTAGGACCGTA 59.463 52.381 15.93 0.00 39.98 4.02
3077 3216 0.313043 CCATACGCGATTAGGACCGT 59.687 55.000 15.93 0.00 37.68 4.83
3078 3217 0.594602 TCCATACGCGATTAGGACCG 59.405 55.000 15.93 0.00 0.00 4.79
3079 3218 3.181489 CCTATCCATACGCGATTAGGACC 60.181 52.174 15.93 0.00 0.00 4.46
3080 3219 3.693085 TCCTATCCATACGCGATTAGGAC 59.307 47.826 15.93 0.00 0.00 3.85
3081 3220 3.959293 TCCTATCCATACGCGATTAGGA 58.041 45.455 15.93 14.91 0.00 2.94
3082 3221 4.158025 ACTTCCTATCCATACGCGATTAGG 59.842 45.833 15.93 12.93 0.00 2.69
3083 3222 5.312120 ACTTCCTATCCATACGCGATTAG 57.688 43.478 15.93 4.08 0.00 1.73
3084 3223 5.306532 GACTTCCTATCCATACGCGATTA 57.693 43.478 15.93 0.00 0.00 1.75
3085 3224 4.175787 GACTTCCTATCCATACGCGATT 57.824 45.455 15.93 0.00 0.00 3.34
3086 3225 3.851976 GACTTCCTATCCATACGCGAT 57.148 47.619 15.93 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.